BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033289
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
          Length = 684

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 46  EPHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDP 88
           E   +   +RPG   + RR  D    +    T    S++ GDP
Sbjct: 526 ELDKFSQALRPGTNTIRRRSVDSSVTIPYERTFRNQSERPGDP 568


>pdb|1EU8|A Chain A, Structure Of Trehalose Maltose Binding Protein From
           Thermococcus Litoralis
          Length = 409

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 87  DPFIVERNPHIHDPDDVFPGLVIKIISPSTPR 118
           DP +V ++PH+ +   VF   V + I P  P+
Sbjct: 340 DPAVVSKSPHLKELRAVFENAVPRPIVPYYPQ 371


>pdb|3AJ0|A Chain A, Crystal Structure Of 4-Pyridoxolactonase From
          Mesorhizobium Loti
          Length = 268

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 33 ILIGSIRGNSLADEPHDYDHVMR 55
          ILI    G  L D  +DYDHVM+
Sbjct: 38 ILIEHAEGRFLIDTGYDYDHVMK 60


>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
           Acidocaldarius
 pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
           Acidocaldarius
          Length = 198

 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)

Query: 83  DKCGDPFIVERN-PHI-HDPDDVFPGLVIKIISPS 115
           D+  D + +ER+ P++ +DPD  FPGL+ ++ SP 
Sbjct: 25  DQTLDLYAMERSVPNVEYDPDQ-FPGLIFRLESPK 58


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.144    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,784,018
Number of Sequences: 62578
Number of extensions: 149230
Number of successful extensions: 232
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 16
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)