BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033289
         (122 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8YXJ9|RPOC_LACH4 DNA-directed RNA polymerase subunit beta' OS=Lactobacillus
           helveticus (strain DPC 4571) GN=rpoC PE=3 SV=1
          Length = 1217

 Score = 34.7 bits (78), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 47  PHDYDHVMRPGNQLLNRRPCDEIYVVGEGETLHTISDKCGDPFI 90
           P DY ++  P  + LN  P D  Y +GEG+ +H   D+ GD  I
Sbjct: 572 PDDYFYINEPTEENLNN-PLDAKYFLGEGQDIHDKIDEVGDDLI 614


>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
           SV=1
          Length = 643

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 68  EIYVVGEGETLHTISDKCGDPF--IVERNPHIHDPDDVFPGLVIKIISPSTPRK 119
           +I++V +G+TL  I+ K G  F  + + N  + +PD + PG+ IK+ S S   K
Sbjct: 2   KIHIVQKGDTLWKIAKKYGVDFDTLKKTNTQLSNPDLIMPGMKIKVPSKSVHMK 55


>sp|Q7MWN8|Y562_PORGI Uncharacterized transporter PG_0562 OS=Porphyromonas gingivalis
           (strain ATCC BAA-308 / W83) GN=PG_0562 PE=3 SV=1
          Length = 558

 Score = 29.3 bits (64), Expect = 6.5,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 53  VMRPGNQLLNRRPC-----DEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGL 107
           V R G +LL  R       D + VVGEG+ +  +++  GD      NPH+     +F GL
Sbjct: 331 VDRAGVELLPDRDLRLQLGDRLTVVGEGKAVERVAEILGDEVKQLDNPHL---TTLFGGL 387

Query: 108 VIKIISPSTP 117
           V+  +    P
Sbjct: 388 VLGCVFGMIP 397


>sp|Q55G75|Y7786_DICDI PH domain-containing protein DDB_G0267786 OS=Dictyostelium
           discoideum GN=DDB_G0267786 PE=4 SV=1
          Length = 528

 Score = 29.3 bits (64), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 88  PFIVERNPHIHDPDDVFPGLVIKI 111
           P+++E  P  HD  DVF G ++K+
Sbjct: 46  PYLLEPRPRDHDKSDVFSGYLVKL 69


>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
           GN=safA PE=1 SV=1
          Length = 387

 Score = 28.9 bits (63), Expect = 9.2,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 68  EIYVVGEGETLHTISDKCGDPF--IVERNPHIHDPDDVFPGLVIKIISPSTP 117
           +I++V +G++L  I++K G     + + N  + +PD + PG+ IK+ S   P
Sbjct: 2   KIHIVQKGDSLWKIAEKYGVDVEEVKKLNTQLSNPDLIMPGMKIKVPSEGVP 53


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,785,703
Number of Sequences: 539616
Number of extensions: 2092288
Number of successful extensions: 3320
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3318
Number of HSP's gapped (non-prelim): 7
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)