Query 033289
Match_columns 122
No_of_seqs 151 out of 331
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 12:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10871 nlpD lipoprotein NlpD 99.7 5.1E-17 1.1E-21 135.8 10.1 47 66-112 59-106 (319)
2 PF01476 LysM: LysM domain; I 99.5 1.5E-14 3.1E-19 86.3 3.8 41 70-111 1-43 (44)
3 PRK14125 cell division suppres 99.4 4.9E-12 1.1E-16 90.7 9.8 48 66-115 35-91 (103)
4 TIGR02899 spore_safA spore coa 99.3 1E-12 2.2E-17 76.6 4.1 40 72-111 1-42 (44)
5 PRK11198 LysM domain/BON super 99.2 2.7E-11 5.8E-16 90.6 4.9 48 66-114 94-147 (147)
6 cd00118 LysM Lysin domain, fou 99.1 1.2E-10 2.6E-15 65.5 4.7 43 69-111 2-45 (46)
7 COG1652 XkdP Uncharacterized p 99.0 1.4E-10 3.1E-15 92.6 2.6 45 69-114 212-263 (269)
8 smart00257 LysM Lysin motif. 98.9 3.5E-09 7.6E-14 58.7 4.5 42 69-111 1-44 (44)
9 PRK13914 invasion associated s 98.8 6.4E-09 1.4E-13 91.4 5.4 43 68-111 28-71 (481)
10 TIGR02907 spore_VI_D stage VI 98.8 7.7E-09 1.7E-13 87.6 4.7 45 66-111 292-337 (338)
11 COG1388 LytE FOG: LysM repeat 98.7 1.5E-08 3.4E-13 71.7 4.3 44 68-112 67-111 (124)
12 PRK06347 autolysin; Reviewed 98.7 1.3E-08 2.8E-13 91.2 4.5 45 66-111 546-591 (592)
13 PRK10783 mltD membrane-bound l 98.7 1.8E-08 3.9E-13 87.3 5.2 47 66-113 401-448 (456)
14 PRK13914 invasion associated s 98.6 6E-08 1.3E-12 85.4 5.7 48 66-115 198-246 (481)
15 PRK06347 autolysin; Reviewed 98.5 8.4E-08 1.8E-12 86.0 5.1 45 66-111 478-523 (592)
16 PRK10783 mltD membrane-bound l 98.3 1.1E-06 2.4E-11 76.4 5.7 46 67-113 343-389 (456)
17 TIGR03505 FimV_core FimV N-ter 98.1 1.6E-06 3.6E-11 59.1 2.6 38 76-114 1-51 (74)
18 PF04225 OapA: Opacity-associa 98.1 2.9E-06 6.3E-11 58.7 3.1 51 68-118 3-58 (85)
19 PRK10260 L,D-transpeptidase; P 98.0 2.2E-05 4.8E-10 66.0 6.9 44 67-111 40-87 (306)
20 PRK10190 L,D-transpeptidase; P 97.9 4.8E-05 1E-09 64.1 7.5 44 67-111 37-84 (310)
21 PF05489 Phage_tail_X: Phage T 97.5 0.00013 2.9E-09 47.8 3.8 43 70-114 4-53 (60)
22 COG3170 FimV Tfp pilus assembl 96.7 0.0011 2.4E-08 61.4 2.7 48 66-114 187-247 (755)
23 PRK11649 putative peptidase; P 96.3 0.0052 1.1E-07 53.5 4.2 47 68-117 96-147 (439)
24 COG3858 Predicted glycosyl hyd 96.1 0.0061 1.3E-07 53.5 3.8 50 66-116 48-98 (423)
25 COG4254 Uncharacterized protei 94.9 0.026 5.6E-07 48.2 3.2 44 68-111 6-53 (339)
26 COG3858 Predicted glycosyl hyd 92.9 0.061 1.3E-06 47.4 1.9 43 69-114 3-47 (423)
27 COG0739 NlpD Membrane proteins 90.8 0.33 7E-06 37.5 3.7 44 68-111 2-46 (277)
28 COG4784 Putative Zn-dependent 90.2 0.37 8E-06 42.5 3.9 45 68-112 429-477 (479)
29 COG3061 OapA Cell envelope opa 88.0 0.84 1.8E-05 37.7 4.3 53 66-118 158-215 (242)
30 COG5004 P2-like prophage tail 87.5 0.78 1.7E-05 31.4 3.2 43 69-111 4-53 (70)
31 COG1388 LytE FOG: LysM repeat 81.1 0.81 1.8E-05 32.1 1.1 31 81-111 1-33 (124)
32 cd00565 ThiS ThiaminS ubiquiti 78.8 2.6 5.6E-05 26.9 2.9 51 67-117 6-64 (65)
33 PRK08364 sulfur carrier protei 71.5 7.6 0.00016 25.3 3.7 50 68-117 16-69 (70)
34 PRK11548 outer membrane biogen 70.7 6.4 0.00014 28.1 3.5 23 67-89 41-63 (113)
35 PRK06437 hypothetical protein; 64.6 10 0.00022 24.7 3.2 50 68-117 13-66 (67)
36 PF07172 GRP: Glycine rich pro 64.6 5.8 0.00013 28.1 2.2 19 19-37 3-21 (95)
37 PF08356 EF_assoc_2: EF hand a 63.2 7 0.00015 27.6 2.4 42 72-113 42-86 (89)
38 PRK06944 sulfur carrier protei 58.4 18 0.00038 22.6 3.4 51 67-117 7-64 (65)
39 PRK05659 sulfur carrier protei 56.6 18 0.00038 22.8 3.2 49 67-115 7-63 (66)
40 TIGR01683 thiS thiamine biosyn 56.4 13 0.00028 23.5 2.6 51 67-117 5-63 (64)
41 PF13510 Fer2_4: 2Fe-2S iron-s 55.8 11 0.00023 25.4 2.2 21 67-87 10-30 (82)
42 KOG2850 Predicted peptidoglyca 55.2 10 0.00022 30.2 2.3 19 69-87 11-29 (186)
43 PF11246 Phage_gp53: Base plat 54.4 9 0.0002 30.5 1.9 36 66-101 44-83 (193)
44 PLN02799 Molybdopterin synthas 51.5 20 0.00044 23.4 3.0 50 68-117 21-81 (82)
45 COG4228 Mu-like prophage DNA c 48.3 25 0.00053 31.6 3.8 42 70-111 400-448 (451)
46 PRK07569 bidirectional hydroge 44.5 19 0.00042 28.4 2.4 21 67-87 10-30 (234)
47 COG5567 Predicted small peripl 41.7 28 0.00061 23.1 2.4 23 18-40 2-24 (58)
48 PF13533 Biotin_lipoyl_2: Biot 39.2 4.2 9.1E-05 25.0 -1.7 12 71-82 23-34 (50)
49 PF05373 Pro_3_hydrox_C: L-pro 37.6 21 0.00046 26.0 1.5 18 76-93 68-85 (101)
50 PRK09570 rpoH DNA-directed RNA 35.6 33 0.00072 23.8 2.2 43 70-115 15-64 (79)
51 PRK10722 hypothetical protein; 34.3 77 0.0017 26.5 4.4 16 69-84 54-69 (247)
52 PF14451 Ub-Mut7C: Mut7-C ubiq 34.0 68 0.0015 21.9 3.5 51 66-116 23-78 (81)
53 PF08139 LPAM_1: Prokaryotic m 33.8 45 0.00098 18.6 2.1 9 30-38 15-23 (25)
54 PF11006 DUF2845: Protein of u 33.7 30 0.00064 23.5 1.7 23 66-89 8-30 (87)
55 cd01616 TGS The TGS domain, na 33.2 54 0.0012 18.5 2.6 45 67-111 8-58 (60)
56 PRK02710 plastocyanin; Provisi 33.1 58 0.0013 23.1 3.2 12 67-78 46-57 (119)
57 PRK15078 polysaccharide export 33.1 2.4E+02 0.0051 24.2 7.4 15 99-113 83-97 (379)
58 COG5510 Predicted small secret 32.6 47 0.001 20.9 2.3 19 21-39 5-23 (44)
59 PRK13835 conjugal transfer pro 31.3 38 0.00082 26.1 2.0 10 30-39 9-18 (145)
60 TIGR02007 fdx_isc ferredoxin, 30.1 61 0.0013 22.8 2.8 24 65-88 13-36 (110)
61 TIGR01682 moaD molybdopterin c 29.9 48 0.001 21.6 2.1 28 90-117 51-79 (80)
62 PHA02578 53 baseplate wedge su 29.8 50 0.0011 26.4 2.6 36 66-101 35-74 (181)
63 PRK15396 murein lipoprotein; P 29.3 63 0.0014 22.3 2.7 16 24-39 7-22 (78)
64 PF02796 HTH_7: Helix-turn-hel 29.2 45 0.00098 19.8 1.8 15 73-87 19-33 (45)
65 PF09680 Tiny_TM_bacill: Prote 28.1 53 0.0011 18.3 1.7 16 23-38 8-23 (24)
66 cd00207 fer2 2Fe-2S iron-sulfu 27.3 70 0.0015 20.2 2.5 21 67-87 9-29 (84)
67 PF02563 Poly_export: Polysacc 26.9 39 0.00084 22.4 1.3 15 98-112 8-22 (82)
68 KOG1625 DNA polymerase alpha-p 26.5 39 0.00084 31.4 1.6 20 101-120 293-313 (600)
69 TIGR03352 VI_chp_3 type VI sec 26.4 1.1E+02 0.0025 22.8 3.9 13 99-111 86-98 (146)
70 PRK05863 sulfur carrier protei 25.5 1.3E+02 0.0029 19.0 3.6 50 67-116 7-63 (65)
71 PF13518 HTH_28: Helix-turn-he 25.4 44 0.00095 19.4 1.2 15 73-87 10-24 (52)
72 COG5633 Predicted periplasmic 25.2 43 0.00094 25.3 1.4 22 90-111 83-105 (123)
73 PRK00022 lolB outer membrane l 24.4 78 0.0017 24.2 2.7 11 29-39 9-19 (202)
74 cd00754 MoaD Ubiquitin domain 24.4 73 0.0016 20.1 2.2 48 70-117 20-79 (80)
75 PRK15175 Vi polysaccharide exp 23.8 2.1E+02 0.0046 24.6 5.5 11 101-111 70-80 (355)
76 PRK11251 DNA-binding transcrip 23.3 1.1E+02 0.0024 22.1 3.2 19 71-89 35-53 (109)
77 COG2963 Transposase and inacti 23.1 58 0.0013 22.5 1.7 15 72-86 21-35 (116)
78 PRK12699 flgH flagellar basal 22.7 1.8E+02 0.004 23.9 4.7 26 14-39 9-34 (246)
79 TIGR02008 fdx_plant ferredoxin 22.1 85 0.0018 21.4 2.3 21 67-87 14-34 (97)
80 PF05225 HTH_psq: helix-turn-h 21.8 56 0.0012 19.8 1.2 18 72-89 12-30 (45)
81 PRK09973 putative outer membra 21.1 1.1E+02 0.0023 21.7 2.6 14 26-39 8-21 (85)
82 TIGR02722 lp_ uncharacterized 21.0 1.4E+02 0.0031 22.9 3.6 12 28-39 8-19 (189)
83 PF01527 HTH_Tnp_1: Transposas 21.0 39 0.00085 21.2 0.4 16 72-87 20-35 (76)
84 PHA00407 phage lambda Rz1-like 21.0 2.4E+02 0.0052 19.9 4.4 27 17-44 30-56 (84)
85 PF02597 ThiS: ThiS family; I 20.2 19 0.00041 22.7 -1.2 49 69-117 15-76 (77)
86 PF00111 Fer2: 2Fe-2S iron-sul 20.1 1.1E+02 0.0023 19.4 2.3 20 68-87 8-29 (78)
87 PF13617 Lipoprotein_19: YnbE- 20.1 68 0.0015 21.1 1.4 15 25-39 3-17 (59)
No 1
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=99.71 E-value=5.1e-17 Score=135.76 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEe
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKII 112 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~ 112 (122)
.++.|+||+|||||+||++||. ...|+++|+|.||+.|||||+|+|.
T Consensus 59 ~~~~y~Vk~GDTL~~IA~~~g~~~~~La~~N~l~~p~~I~~GQ~L~i~ 106 (319)
T PRK10871 59 SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYSLNVGQTLQVG 106 (319)
T ss_pred CCCceEECCCCHHHHHHHHHCcCHHHHHHhcCCCCCccccCCCEEEeC
Confidence 4678999999999999999995 5699999999999999999999993
No 2
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=99.51 E-value=1.5e-14 Score=86.31 Aligned_cols=41 Identities=34% Similarity=0.588 Sum_probs=33.9
Q ss_pred EEeccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 70 YVVGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 70 Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri 111 (122)
|+||+|||||+||.+||.. .+.+.||++.+++ |+|||+|.|
T Consensus 1 y~V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~i 43 (44)
T PF01476_consen 1 YTVQPGDTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCI 43 (44)
T ss_dssp EEE-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEE
T ss_pred CEECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEe
Confidence 9999999999999999954 3888888998888 999999998
No 3
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=99.38 E-value=4.9e-12 Score=90.67 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=38.7
Q ss_pred CCccEEeccCChHHHHHHHhCCh---------hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP---------FIVERNPHIHDPDDVFPGLVIKIISPS 115 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~---------~il~~n~~I~~P~~I~PGqviri~~~~ 115 (122)
....|+|++|||||+||++|+.. ..+.++|+|+++ .|+|||+|+| |..
T Consensus 35 ~~~~~tV~~GDTLW~IA~~y~~~~~l~~~~~v~~I~~~N~l~~~-~I~~Gq~L~I-P~~ 91 (103)
T PRK14125 35 QYVEITVQEGDTLWALADQYAGKHHMAKNEFIEWVEDVNNLPSG-HIKAGDKLVI-PVL 91 (103)
T ss_pred CcEEEEECCCCCHHHHHHHhCCCcCCCHHHHHHHHHHhcCCCCC-cCCCCCEEEE-ecC
Confidence 35679999999999999999631 256778899776 6999999999 543
No 4
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=99.35 E-value=1e-12 Score=76.63 Aligned_cols=40 Identities=38% Similarity=0.758 Sum_probs=35.3
Q ss_pred eccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 72 VGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 72 Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri 111 (122)
|++|||||+||++||.. .+.+.|+.+.+|+.|+|||+|.|
T Consensus 1 v~~gdtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~i 42 (44)
T TIGR02899 1 VQKGDTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKI 42 (44)
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEec
Confidence 78999999999999843 37777778899999999999998
No 5
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=99.18 E-value=2.7e-11 Score=90.58 Aligned_cols=48 Identities=35% Similarity=0.699 Sum_probs=40.4
Q ss_pred CCccEEeccCChHHHHHHHh-CCh----hhhhhCC-CCCCCCCcCCCcEEEEeCC
Q 033289 66 CDEIYVVGEGETLHTISDKC-GDP----FIVERNP-HIHDPDDVFPGLVIKIISP 114 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~-g~~----~il~~n~-~I~~P~~I~PGqviri~~~ 114 (122)
....|+||+|||||+||.+| |+. .|++.|+ .|.+|+.|+|||+|+| ||
T Consensus 94 ~~~~y~Vk~GDTL~~IA~~~~g~~~~~~~I~~~N~~~l~~~~~I~pGq~L~I-P~ 147 (147)
T PRK11198 94 ESQFYTVKSGDTLSAIAKKVYGNANKYNKIFEANKPMLKSPDKIYPGQVLRI-PE 147 (147)
T ss_pred CCeEEEECCCCCHHHHHHHHcCChhhHHHHHHhhhhcCCCcCCcCcCCEEec-CC
Confidence 45679999999999999998 552 3777775 5899999999999999 54
No 6
>cd00118 LysM Lysin domain, found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function.
Probab=99.12 E-value=1.2e-10 Score=65.50 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=35.7
Q ss_pred cEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 69 IYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri 111 (122)
.|+|++|||+|+||.+||. ...+.+.|.+.++..|.|||.|.|
T Consensus 2 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~~~~~~~~~~g~~l~i 45 (46)
T cd00118 2 TYTVKKGDTLSSIAQRYGISVEELLKLNGLSDPDNLQVGQKLKI 45 (46)
T ss_pred EEEECCCCCHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEec
Confidence 5999999999999999985 444455555578899999999988
No 7
>COG1652 XkdP Uncharacterized protein containing LysM domain [Function unknown]
Probab=99.01 E-value=1.4e-10 Score=92.65 Aligned_cols=45 Identities=40% Similarity=0.619 Sum_probs=40.5
Q ss_pred cEEeccCChHHHHHHHh-CCh----hhhhhCC--CCCCCCCcCCCcEEEEeCC
Q 033289 69 IYVVGEGETLHTISDKC-GDP----FIVERNP--HIHDPDDVFPGLVIKIISP 114 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~-g~~----~il~~n~--~I~~P~~I~PGqviri~~~ 114 (122)
.|+|++|||||.||.++ |+. .|+++|. .|+|||+|+|||+|+| |.
T Consensus 212 ~~~v~rgDTl~~is~~~Yg~~~~y~~I~~aNk~~~~~~p~~I~pGq~l~i-P~ 263 (269)
T COG1652 212 TNTVKRGDTLWQISKKVYGDGVEYRKIAEANKALVLDNPDKIKPGQVLRI-PD 263 (269)
T ss_pred EEEeccCCcccccchhhcCcceEEEeHhhhhhhhccCCCCcCCCcceeeC-CC
Confidence 79999999999999995 764 2999998 6999999999999999 54
No 8
>smart00257 LysM Lysin motif.
Probab=98.89 E-value=3.5e-09 Score=58.70 Aligned_cols=42 Identities=38% Similarity=0.587 Sum_probs=34.0
Q ss_pred cEEeccCChHHHHHHHhCC-hh-hhhhCCCCCCCCCcCCCcEEEE
Q 033289 69 IYVVGEGETLHTISDKCGD-PF-IVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~-~~-il~~n~~I~~P~~I~PGqviri 111 (122)
.|+|++|||+|+||.+||. .. +...|+ ..++..++||+.|+|
T Consensus 1 ~~~v~~gdt~~~ia~~~~~~~~~~~~~N~-~~~~~~~~~g~~l~i 44 (44)
T smart00257 1 TYTVKKGDTLSSIARRYGISVSDLLELNN-ILDPDNLQVGQKLKI 44 (44)
T ss_pred CeEeCCCCCHHHHHHHhCCCHHHHHHHcC-CCCccccCCCCEEeC
Confidence 4899999999999999984 44 555555 567789999999875
No 9
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=98.80 E-value=6.4e-09 Score=91.42 Aligned_cols=43 Identities=23% Similarity=0.464 Sum_probs=36.7
Q ss_pred ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri 111 (122)
..|+||+|||||+||++||.. ..|.+.|+| +++.|+|||+|+|
T Consensus 28 ~tytVq~GDTLw~IA~~ygvtv~~I~~~N~l-~~~~I~~Gq~L~I 71 (481)
T PRK13914 28 STVVVEAGDTLWGIAQSKGTTVDAIKKANNL-TTDKIVPGQKLQV 71 (481)
T ss_pred ceEEECCCCCHHHHHHHHCCCHHHHHHHhCC-CcccccCCCEEEe
Confidence 459999999999999999954 466666678 5789999999999
No 10
>TIGR02907 spore_VI_D stage VI sporulation protein D. SpoVID, the stage VI sporulation protein D, is restricted to endospore-forming members of the bacteria, all of which are found among the Firmicutes. It is widely distributed but not quite universal in this group. Between well-conserved N-terminal and C-terminal domains is a poorly conserved, low-complexity region of variable length, rich enough in glutamic acid to cause spurious BLAST search results unless a filter is used. The seed alignment for this model was trimmed, in effect, by choosing member sequences in which these regions are relatively short. SpoVID is involved in spore coat assembly by the mother cell compartment late in the process of sporulation.
Probab=98.77 E-value=7.7e-09 Score=87.62 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri 111 (122)
....|+||+|||||+||+|||. ...+.++|++. ++.|++||+|.|
T Consensus 292 ~~~~YiVq~GDTL~sIAkRYGVSV~~L~r~N~L~-~~~L~~GQ~L~I 337 (338)
T TIGR02907 292 KLRMCIVQEGDTIETIAERYEISVSQLIRHNQLE-DFEVNEGQILYI 337 (338)
T ss_pred ccEEEEECCCCCHHHHHHHHCcCHHHHHHHhCCC-ccccCCCCEEEe
Confidence 4567999999999999999995 45677777886 899999999998
No 11
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=1.5e-08 Score=71.72 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=37.8
Q ss_pred ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEe
Q 033289 68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKII 112 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~ 112 (122)
..|+|++||||+.||.+||.+ -.|.++|++.++ .|++||+|++.
T Consensus 67 ~~~~V~~gdtL~~Ia~~~~~tv~~l~~~n~l~~~-~i~~gq~l~~~ 111 (124)
T COG1388 67 VTYTVKKGDTLSKIARKYGVTVAELKQLNNLSSD-KIKVGQKLKLP 111 (124)
T ss_pred ceEEEecCCCHHHHHHHhCCCHHHHHHHhccCCC-ceecCcEEEEe
Confidence 579999999999999999954 577777777666 99999999993
No 12
>PRK06347 autolysin; Reviewed
Probab=98.70 E-value=1.3e-08 Score=91.17 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=39.2
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri 111 (122)
+...|+||+|||||+||++||. ...|.+||+|. ++.|+|||+|.|
T Consensus 546 ~~~~Y~Vk~GDTL~sIA~KygvSv~~L~~~N~L~-~~~L~~GQ~L~I 591 (592)
T PRK06347 546 TVKTYTVKKGDSLWAISRQYKTTVDNIKAWNKLT-SNMIHVGQKLTI 591 (592)
T ss_pred cceeeecCCCCcHHHHHHHhCCCHHHHHHhcCCC-cccCCCCCEEec
Confidence 3567999999999999999995 45778888886 688999999987
No 13
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=98.70 E-value=1.8e-08 Score=87.35 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=38.6
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEeC
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKIIS 113 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~~ 113 (122)
+...|+||+|||||+||.+||. ...|.++|++.++ .|+|||+|+|.-
T Consensus 401 ~~~~Y~Vr~GDTL~sIA~kygVtv~~L~~~N~l~~~-~L~pGq~L~l~v 448 (456)
T PRK10783 401 DSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAK-NLQPGDKLTLFV 448 (456)
T ss_pred cceeEEeCCCCCHHHHHHHhCCCHHHHHHhcCCCCC-cCCCCCEEEEec
Confidence 4567999999999999999995 4566677666555 999999999943
No 14
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=98.61 E-value=6e-08 Score=85.37 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPS 115 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~ 115 (122)
....|+||+|||||+||++||.+ ..+.++|+|.+ +.|+|||+|+| |.+
T Consensus 198 ~a~tytVq~GDTL~sIAkrYgVtv~eI~~~N~l~s-~~L~pGQ~L~I-p~s 246 (481)
T PRK13914 198 NATTHAVKSGDTIWALSVKYGVSVQDIMSWNNLSS-SSIYVGQKLAI-KQT 246 (481)
T ss_pred CCeEEEECCCCCHHHHHHHHCCCHHHHHHhcCCCc-cccCCCCEEEe-cCC
Confidence 45789999999999999999954 57777788865 57999999999 544
No 15
>PRK06347 autolysin; Reviewed
Probab=98.55 E-value=8.4e-08 Score=85.99 Aligned_cols=45 Identities=20% Similarity=0.410 Sum_probs=38.7
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri 111 (122)
+...|+|++|||||+||.+||. ...|.++|+|. .+.|+|||+|.|
T Consensus 478 ~~~~YtVk~GDTL~sIAkkygVSv~~L~~~N~l~-s~~L~~GQ~L~I 523 (592)
T PRK06347 478 NAKVYTVAKGDSLWRIANNNKVTIANLKSWNNLK-SDFIYPGQKLKV 523 (592)
T ss_pred cceeeeecCCCCHHHHHHHHCCCHHHHHHhcCCC-cccccCCcEEEE
Confidence 4567999999999999999995 45777777786 468999999999
No 16
>PRK10783 mltD membrane-bound lytic murein transglycosylase D; Provisional
Probab=98.30 E-value=1.1e-06 Score=76.37 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=38.4
Q ss_pred CccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEEeC
Q 033289 67 DEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKIIS 113 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri~~ 113 (122)
...|+|++|||||+||.+||. ...+.++|.+.+ +.|.+||+|.|..
T Consensus 343 ~~~y~Vk~GDTL~sIA~r~gvs~~~L~~~N~l~~-~~L~~Gq~L~Ip~ 389 (456)
T PRK10783 343 SRSYKVRSGDTLSGIASRLNVSTKDLQQWNNLRG-SKLKVGQTLTIGA 389 (456)
T ss_pred ceEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCc-ccCCCCCEEEecC
Confidence 457999999999999999995 456677777766 8999999999943
No 17
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=98.13 E-value=1.6e-06 Score=59.05 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=31.9
Q ss_pred ChHHHHHHHhC-Ch---------hhhhhCCCC---CCCCCcCCCcEEEEeCC
Q 033289 76 ETLHTISDKCG-DP---------FIVERNPHI---HDPDDVFPGLVIKIISP 114 (122)
Q Consensus 76 DTL~~IA~~~g-~~---------~il~~n~~I---~~P~~I~PGqviri~~~ 114 (122)
||||+||.++. +. .|+++||+. .|++.|++|++|+| |.
T Consensus 1 DTLw~IA~~~~~~~~~s~~q~m~ai~~aNp~AF~~~nin~L~~G~~L~i-P~ 51 (74)
T TIGR03505 1 DTLWGIAQRVRPDNSVSLYQMMLALYRANPDAFIGGNINRLKVGQILRI-PS 51 (74)
T ss_pred CcHHHHHHHHccCCCCCHHHHHHHHHHHCHHhHhcCChhhcCCCCEEeC-CC
Confidence 89999999992 21 388999976 58999999999999 54
No 18
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=98.08 E-value=2.9e-06 Score=58.71 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=29.7
Q ss_pred ccEEeccCChHHHHHHHhCCh-----hhhhhCCCCCCCCCcCCCcEEEEeCCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCGDP-----FIVERNPHIHDPDDVFPGLVIKIISPSTPR 118 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-----~il~~n~~I~~P~~I~PGqviri~~~~~~~ 118 (122)
..|+|++||||..|=.++|-+ .++++...-+.=..|+|||.|.+.-..+|+
T Consensus 3 ~~~~V~~GDtLs~iF~~~gls~~dl~~v~~~~~~~k~L~~L~pGq~l~f~~d~~g~ 58 (85)
T PF04225_consen 3 QEYTVKSGDTLSTIFRRAGLSASDLYAVLEADGEAKPLTRLKPGQTLEFQLDEDGQ 58 (85)
T ss_dssp -EEE--TT--HHHHHHHTT--HHHHHHHHHHGGGT--GGG--TT-EEEEEE-TTS-
T ss_pred cEEEECCCCcHHHHHHHcCCCHHHHHHHHhccCccchHhhCCCCCEEEEEECCCCC
Confidence 469999999999999999953 377777555555889999999985544543
No 19
>PRK10260 L,D-transpeptidase; Provisional
Probab=97.97 E-value=2.2e-05 Score=65.99 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=38.5
Q ss_pred CccEEeccCCh--HHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 67 DEIYVVGEGET--LHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 67 ~~~Y~Vk~GDT--L~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri 111 (122)
...|+|++||| |-.||++|+. ..+.++||.+ ||....+|++|.|
T Consensus 40 ~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-dp~lp~~G~~i~i 87 (306)
T PRK10260 40 NQVITIPEGNTQPLEYFAAEYQMGLSNMMEANPGV-DTFLPKGGTVLNI 87 (306)
T ss_pred cEEEEeCCCCCchHHHHHHHhCCCHHHHHHhCcCC-CCCcCCCCCEEEe
Confidence 56799999765 9999999974 4599999999 7999999999988
No 20
>PRK10190 L,D-transpeptidase; Provisional
Probab=97.88 E-value=4.8e-05 Score=64.07 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=38.6
Q ss_pred CccEEeccCC--hHHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 67 DEIYVVGEGE--TLHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 67 ~~~Y~Vk~GD--TL~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri 111 (122)
...|+|++|| +|-+||++|+. ..+.++||.+ ||+...+|++|.|
T Consensus 37 ~~~~~v~~~~~~~le~iA~~f~~g~~~l~~aNPgv-d~~~p~~G~~i~i 84 (310)
T PRK10190 37 SLTVTVPDHNTQPLETFAAQYGQGLSNMLEANPGA-DVFLPKSGSQLTI 84 (310)
T ss_pred eEEEEecCCCCccHHHHHHHhCCCHHHHHHhCCCC-CCCCCCCCCEEEe
Confidence 5679999977 59999999974 4599999999 7999999999998
No 21
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.
Probab=97.52 E-value=0.00013 Score=47.81 Aligned_cols=43 Identities=30% Similarity=0.495 Sum_probs=35.1
Q ss_pred EEeccCChHHHHHHHh-CCh-----hhhhhCCCCCCC-CCcCCCcEEEEeCC
Q 033289 70 YVVGEGETLHTISDKC-GDP-----FIVERNPHIHDP-DDVFPGLVIKIISP 114 (122)
Q Consensus 70 Y~Vk~GDTL~~IA~~~-g~~-----~il~~n~~I~~P-~~I~PGqviri~~~ 114 (122)
|+. .||||-.|++|+ |+. .++++||++.+- ..+-.|.+|.| |-
T Consensus 4 ~t~-~GDtlD~I~~r~yG~~~~~~e~ll~aNp~La~~~~~lpaG~~I~l-P~ 53 (60)
T PF05489_consen 4 YTT-QGDTLDLIAYRHYGREDGAVEALLEANPGLADTGPVLPAGTVIIL-PD 53 (60)
T ss_pred EEe-CcCcHHHHHHHHhCcHHHHHHHHHHHChhhhhcCCcCCCCCEEEC-CC
Confidence 555 999999999996 853 389999999888 66667899988 54
No 22
>COG3170 FimV Tfp pilus assembly protein FimV [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0011 Score=61.39 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=39.5
Q ss_pred CCccEEeccCChHHHHHHHh-C-Ch--------hhhhhCCCC---CCCCCcCCCcEEEEeCC
Q 033289 66 CDEIYVVGEGETLHTISDKC-G-DP--------FIVERNPHI---HDPDDVFPGLVIKIISP 114 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~-g-~~--------~il~~n~~I---~~P~~I~PGqviri~~~ 114 (122)
++..|+|++|||||+||.+. + +- -+.+.||+- .|=|.+.+|++|+| |.
T Consensus 187 ~g~tyt~~~~Dtl~dIAs~~rp~~~vt~~Q~~lAly~lNP~af~~gni~RLr~GSvLri-P~ 247 (755)
T COG3170 187 PGDTYTVRSGDTLWDIASRLRPQDHVTVEQMLLALYQLNPQAFVNGNINRLRAGSVLRI-PS 247 (755)
T ss_pred CCcccccCCcchHHHHHHhhcCcccccHHHHHHHHHhhChhhhcccchhhccccceeec-cc
Confidence 56789999999999999997 5 21 278899865 46689999999999 54
No 23
>PRK11649 putative peptidase; Provisional
Probab=96.27 E-value=0.0052 Score=53.54 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=35.3
Q ss_pred ccEEeccCChHHHHHHHhCCh-h----hhhhCCCCCCCCCcCCCcEEEEeCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCGDP-F----IVERNPHIHDPDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-~----il~~n~~I~~P~~I~PGqviri~~~~~~ 117 (122)
..|+|++||||.+|=.++|.+ . +.+++ .+...|.|||.|++.-..+|
T Consensus 96 ~~~~Vk~GDTl~~iL~r~Gi~~~di~~l~~~~---~~L~~Lr~Gq~l~~~~d~dG 147 (439)
T PRK11649 96 HEYVVSTGDTLSSILNQYGIDMSDISQLAAQD---KELRNLKIGQQLSWTLTADG 147 (439)
T ss_pred EEEEeCCCCCHHHHHHHcCCCHHHHHHHHHcC---hHhhcCCCCCEEEEEECCCC
Confidence 379999999999999999943 2 44433 45678999999999533333
No 24
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=96.12 E-value=0.0061 Score=53.53 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=40.5
Q ss_pred CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPST 116 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~~ 116 (122)
....|.|++||||++||.++|.+ .-++.-+.+..|..+.+|-.|.+ |+..
T Consensus 48 ~~~~y~~~~~d~~~Sia~~~~vt~~~~~~m~~~~~~~~l~~~~~l~~-P~~~ 98 (423)
T COG3858 48 SGHFYDVGPGDTLTSIARTVGVTQDSAAIMNFVICPGYLQYGLNLYI-PSAR 98 (423)
T ss_pred cceEEEecCCcchhhhhhhhcCCHHHHHhhcccccccceeeeeEEec-cCCC
Confidence 56889999999999999999954 44555555667999999999999 6543
No 25
>COG4254 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=0.026 Score=48.25 Aligned_cols=44 Identities=20% Similarity=0.111 Sum_probs=39.0
Q ss_pred ccEEeccCChHHHHHHHh-CC---hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTISDKC-GD---PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~-g~---~~il~~n~~I~~P~~I~PGqviri 111 (122)
-.|+|+.||||...+..| .+ .+.++.-|++.+|+.+.||-.|+|
T Consensus 6 ~~yrv~~gdtli~l~~~yl~~~~g~r~~q~an~~~~P~~l~pgs~l~i 53 (339)
T COG4254 6 LTYRVLFGDTLILLLGGYLTLLAGSRAAQPANTKRPPFILQPGSCLPI 53 (339)
T ss_pred ceeeeccccHHHHHHHHhhhccchhhhhcccccCCCCcccCCCccccC
Confidence 359999999999999999 44 347778899999999999999999
No 26
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=92.91 E-value=0.061 Score=47.39 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=35.9
Q ss_pred cEEeccCChHHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289 69 IYVVGEGETLHTISDKCGD--PFIVERNPHIHDPDDVFPGLVIKIISP 114 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~--~~il~~n~~I~~P~~I~PGqviri~~~ 114 (122)
.|.|++||+++.|+.+|+. ..|+.. +.+.| |+|-+||.+.+ |+
T Consensus 3 i~~~~pg~~~~~i~~~~~~~~~~i~~~-~~~~~-d~~~~~q~~~v-~~ 47 (423)
T COG3858 3 IHLVGPGDSRLIIAVYFPYTNNRIVNG-NDYTN-DDLVDGQTFVV-PP 47 (423)
T ss_pred EEEccCCceeeeehhhccccccccccc-ccccc-ccccCceeEEE-CC
Confidence 5899999999999999983 457444 56777 99999999999 55
No 27
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=90.78 E-value=0.33 Score=37.54 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=34.3
Q ss_pred ccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri 111 (122)
..|+|++||||+.|+.+++.. ..+...+.+..+..+.+||++.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (277)
T COG0739 2 SLYVVKKGDTLSAIAARLGISAKDLARLNNLLKKRLLRIGQLLRV 46 (277)
T ss_pred ceEEecCCCHHHHHHHHcCCCHHHHHHHHhhccccccCccceeee
Confidence 358999999999999999854 35555554544449999999998
No 28
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=90.21 E-value=0.37 Score=42.54 Aligned_cols=45 Identities=22% Similarity=0.340 Sum_probs=36.2
Q ss_pred ccEEeccCChHHHHHHHh-CChh---hhhhCCCCCCCCCcCCCcEEEEe
Q 033289 68 EIYVVGEGETLHTISDKC-GDPF---IVERNPHIHDPDDVFPGLVIKII 112 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~-g~~~---il~~n~~I~~P~~I~PGqviri~ 112 (122)
..-+||+|||+-+.|-+- |..+ .+.--|.+..-..+.|||+++|.
T Consensus 429 rvvtVk~GqT~~~lAA~m~G~~rkldlfRllNam~~~a~~~pGd~vKii 477 (479)
T COG4784 429 RVVTVKPGQTMASLAARMMGTDRKLDLFRLLNAMSPGATVRPGDKVKII 477 (479)
T ss_pred EEEEecCCccHHHHHhhccCchhHHHHHHHHhccCCCCcCCCCCeeeec
Confidence 347899999999999997 7443 45555777777999999999983
No 29
>COG3061 OapA Cell envelope opacity-associated protein A [Cell envelope biogenesis, outer membrane]
Probab=88.02 E-value=0.84 Score=37.67 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCccEEeccCChHHHHHHHhCCh----hhhhhCCCCCCC-CCcCCCcEEEEeCCCCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP----FIVERNPHIHDP-DDVFPGLVIKIISPSTPR 118 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~----~il~~n~~I~~P-~~I~PGqviri~~~~~~~ 118 (122)
....|+|++|+||...=+.+|-+ +-.++--.-.+| ..+.-||+|+|.--..|+
T Consensus 158 ~wqsy~V~~G~TLaQlFRdn~LpitDVnAMakveGagkpLSnlkaGq~Vki~~naqG~ 215 (242)
T COG3061 158 NWQSYTVPQGKTLAQLFRDNNLPITDVNAMAKVEGAGKPLSNLKAGQKVKISLNAQGR 215 (242)
T ss_pred cceeEEecCCccHHHHHhccCCChHHhHHHHhhccCCCchhhccCCCEEEEEEcCccc
Confidence 35679999999999998888743 344454566777 889999999994444444
No 30
>COG5004 P2-like prophage tail protein X [General function prediction only]
Probab=87.49 E-value=0.78 Score=31.38 Aligned_cols=43 Identities=30% Similarity=0.541 Sum_probs=34.1
Q ss_pred cEEeccCChHHHHHHHh-CC-----hhhhhhCCCCCCCCCcCC-CcEEEE
Q 033289 69 IYVVGEGETLHTISDKC-GD-----PFIVERNPHIHDPDDVFP-GLVIKI 111 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~-g~-----~~il~~n~~I~~P~~I~P-Gqviri 111 (122)
.|.-..|||+=.+++|+ |- ..++++||.|.|=.-++| |..|.+
T Consensus 4 ~~Rt~~gDtvDalc~~~Ygrt~~v~eavl~ANpGlAd~gp~lp~gl~i~l 53 (70)
T COG5004 4 IVRTRQGDTVDALCWRVYGRTTGVTEAVLEANPGLADWGPVLPHGLAITL 53 (70)
T ss_pred EEEeccCchHHHHHHHHHhhHHHHHHHHHhcCCChhhcCCCCccceeEec
Confidence 47778999999999995 73 248999999998877776 555555
No 31
>COG1388 LytE FOG: LysM repeat [Cell envelope biogenesis, outer membrane]
Probab=81.06 E-value=0.81 Score=32.07 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=24.4
Q ss_pred HHHHhCC-hhhhhhCCCCCC-CCCcCCCcEEEE
Q 033289 81 ISDKCGD-PFIVERNPHIHD-PDDVFPGLVIKI 111 (122)
Q Consensus 81 IA~~~g~-~~il~~n~~I~~-P~~I~PGqviri 111 (122)
||.+||. ...+.+.+.+.+ ++.|+|||+|.+
T Consensus 1 ia~~~~~~v~~l~~~n~~~~~s~~i~~gq~l~~ 33 (124)
T COG1388 1 IASKYGVSVKALKKANALTGKSDAIKPGQVLKI 33 (124)
T ss_pred CcccccccHHHHHHHhcccCCCCccccCceEEc
Confidence 5778874 446777777754 899999999999
No 32
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=78.76 E-value=2.6 Score=26.86 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=39.7
Q ss_pred CccEEeccCChHHHHHHHhCCh---hhhhhCCCCCCCC-----CcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP---FIVERNPHIHDPD-----DVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~P~-----~I~PGqviri~~~~~~ 117 (122)
++.|.+.+|-|+.++-.+.+.+ ..++-|-.+-.++ .|..|+.|.|.|+-.|
T Consensus 6 g~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 6 GEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEeccC
Confidence 5568899999999999998733 2567787665554 7999999999887644
No 33
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=71.46 E-value=7.6 Score=25.31 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=38.5
Q ss_pred ccEEeccCChHHHHHHHhCCh---hhhhhCCCCCCCCC-cCCCcEEEEeCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCGDP---FIVERNPHIHDPDD-VFPGLVIKIISPSTP 117 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~P~~-I~PGqviri~~~~~~ 117 (122)
..+.+.+|-|+.++-...|.+ ..++.|-.+-.+++ +..|+.|.|.|+-.|
T Consensus 16 ~~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~V~G 69 (70)
T PRK08364 16 KEIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIPVVSG 69 (70)
T ss_pred eEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEccccC
Confidence 357788999999999998743 26778877755644 899999999887544
No 34
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=70.72 E-value=6.4 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=18.6
Q ss_pred CccEEeccCChHHHHHHHhCChh
Q 033289 67 DEIYVVGEGETLHTISDKCGDPF 89 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~~ 89 (122)
+..-.|++|.|=-++..-.|.|.
T Consensus 41 ~~l~~l~~GmTk~qV~~lLGtP~ 63 (113)
T PRK11548 41 NDVAKIHVGMTQQQVAYTLGTPM 63 (113)
T ss_pred HHHHHhcCCCCHHHHHHHcCCCc
Confidence 45568999999888888888774
No 35
>PRK06437 hypothetical protein; Provisional
Probab=64.60 E-value=10 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.033 Sum_probs=38.2
Q ss_pred ccEEeccCChHHHHHHHhCCh---hhhhhCCCCCCC-CCcCCCcEEEEeCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCGDP---FIVERNPHIHDP-DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~P-~~I~PGqviri~~~~~~ 117 (122)
..|.+.+|-|+.++..+.|.+ ..++.|-.+-.+ ..|.+|+.|.|.++-.|
T Consensus 13 ~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 13 KTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred eEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEEecccC
Confidence 458889999999999999842 266788666455 56889999999776543
No 36
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.58 E-value=5.8 Score=28.10 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 033289 19 DAASWYCAIVILALILIGS 37 (122)
Q Consensus 19 ~~~s~~~al~l~allll~s 37 (122)
.++..+++|+++++||++|
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444555555444444443
No 37
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=63.23 E-value=7 Score=27.61 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=29.1
Q ss_pred eccC--ChHHHHHHHhCChhhhhhCC-CCCCCCCcCCCcEEEEeC
Q 033289 72 VGEG--ETLHTISDKCGDPFIVERNP-HIHDPDDVFPGLVIKIIS 113 (122)
Q Consensus 72 Vk~G--DTL~~IA~~~g~~~il~~n~-~I~~P~~I~PGqviri~~ 113 (122)
+++| ||.|.|=++||-.-.+.-+. -|..+-.+-|||.+-++|
T Consensus 42 ierGR~ETtW~vLR~FgY~d~L~L~d~~l~p~l~v~~~~svELS~ 86 (89)
T PF08356_consen 42 IERGRHETTWTVLRKFGYDDDLSLSDDFLYPKLDVPPDQSVELSP 86 (89)
T ss_pred HHhCcchHHHHHHHHcCCCCcceeccccCCCCccCCCCCeeecCc
Confidence 4666 99999999998443334443 344447788899888843
No 38
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=58.44 E-value=18 Score=22.64 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=37.8
Q ss_pred CccEEeccCChHHHHHHHhCC-hh-hhhhCCCCCC-----CCCcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD-PF-IVERNPHIHD-----PDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~~-il~~n~~I~~-----P~~I~PGqviri~~~~~~ 117 (122)
++.+.+.+|-||.++-...+. +. .++-|-.+-+ -..+..|+.|-|.+|-.|
T Consensus 7 g~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 7 QQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred CEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEeeccC
Confidence 556888899999999988873 32 5566765533 346999999999887654
No 39
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=56.59 E-value=18 Score=22.78 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=36.2
Q ss_pred CccEEeccCChHHHHHHHhCCh--h-hhhhCCCC-C----CCCCcCCCcEEEEeCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP--F-IVERNPHI-H----DPDDVFPGLVIKIISPS 115 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~--~-il~~n~~I-~----~P~~I~PGqviri~~~~ 115 (122)
++.|.+.+|.||.++-...|.+ . .++-|-.| . .-..+..||.|.|.++-
T Consensus 7 G~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~v 63 (66)
T PRK05659 7 GEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHAL 63 (66)
T ss_pred CeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEEe
Confidence 4568899999999999998843 2 55566433 2 44779999999986654
No 40
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=56.43 E-value=13 Score=23.54 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=38.0
Q ss_pred CccEEeccCChHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD-P--FIVERNPHIHDP-----DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~--~il~~n~~I~~P-----~~I~PGqviri~~~~~~ 117 (122)
+..|.+.+|=||.++-...+. + ..++-|..+-.+ ..|..|+.|.|.|+-.|
T Consensus 5 g~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 5 GEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred CeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEEeccC
Confidence 455788888899999999873 2 267778766433 35999999999887544
No 41
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=55.79 E-value=11 Score=25.38 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=17.3
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..|.|.+|+||.+.+.+.|.
T Consensus 10 G~~v~~~~G~til~al~~~gi 30 (82)
T PF13510_consen 10 GKPVEVPPGETILEALLAAGI 30 (82)
T ss_dssp TEEEEEEET-BHHHHHHHTT-
T ss_pred CEEEEEcCCCHHHHHHHHCCC
Confidence 556999999999999999984
No 42
>KOG2850 consensus Predicted peptidoglycan-binding protein, contains LysM domain [General function prediction only]
Probab=55.24 E-value=10 Score=30.21 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.6
Q ss_pred cEEeccCChHHHHHHHhCC
Q 033289 69 IYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~ 87 (122)
.-+||+||||..||.+|-.
T Consensus 11 ~~~iq~~dt~~a~al~~~~ 29 (186)
T KOG2850|consen 11 EVTIQEGDTLQAIALNYES 29 (186)
T ss_pred eeeeccCchhhhHHhhccc
Confidence 3689999999999999863
No 43
>PF11246 Phage_gp53: Base plate wedge protein 53; InterPro: IPR022607 The baseplate of Enterobacteria phage T4 controls host cell recognition, attachment, tail sheath contraction and viral DNA ejection. The structure of the baseplate suggests a mechanism of baseplate structural transition during the initial stages of T4 infection. The baseplate is assembled from six identical wedges that surround the central hub. Gp53, along with other T4 gene products, combine sequentially to assemble a wedge [].
Probab=54.40 E-value=9 Score=30.51 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=30.2
Q ss_pred CCccEEeccCChHHHHHHHh-CCh---hhhhhCCCCCCCC
Q 033289 66 CDEIYVVGEGETLHTISDKC-GDP---FIVERNPHIHDPD 101 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~-g~~---~il~~n~~I~~P~ 101 (122)
-.+.|.|+.|++=..+|.+. |++ |++---|+|.||+
T Consensus 44 ~~~~Y~I~~g~RPe~vA~~lYGdp~ldWiiLm~NnI~D~y 83 (193)
T PF11246_consen 44 LFETYYIRGGERPEQVAYRLYGDPQLDWIILMINNIYDPY 83 (193)
T ss_pred eeEEEEeCCCCCHHHHHHHHhCCccceeeeeeecCCcchh
Confidence 35779999999999999995 986 6777778888984
No 44
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=51.47 E-value=20 Score=23.43 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred ccEEeccCChHHHHHHHhCC--h--------hhhhhCCCC-CCCCCcCCCcEEEEeCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCGD--P--------FIVERNPHI-HDPDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~--~--------~il~~n~~I-~~P~~I~PGqviri~~~~~~ 117 (122)
..+.+..|-|+-++-+..+. | .+++-|..+ .+-..|..||.|.|.||-.|
T Consensus 21 ~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~PpvsG 81 (82)
T PLN02799 21 MTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPPISG 81 (82)
T ss_pred EEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCCCCC
Confidence 44666677676666544321 1 135667655 44466999999999999765
No 45
>COG4228 Mu-like prophage DNA circulation protein [General function prediction only]
Probab=48.34 E-value=25 Score=31.62 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=32.5
Q ss_pred EEeccCCh--HHHHHHHh-CCh---h-hhhhCCCCCCCCCcCCCcEEEE
Q 033289 70 YVVGEGET--LHTISDKC-GDP---F-IVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 70 Y~Vk~GDT--L~~IA~~~-g~~---~-il~~n~~I~~P~~I~PGqviri 111 (122)
-+|+=+|| ++-+|.|+ ||. | .+..||+|++|.-|.-|-++..
T Consensus 400 ~~v~~~~t~pa~lla~r~yGd~~r~~elvrl~n~I~HP~Fi~~Gt~~~~ 448 (451)
T COG4228 400 AEVDGNTTEPALLLAYRFYGDSARGWELVRLNNGIHHPAFIPGGTLVNV 448 (451)
T ss_pred eEEecCCcchHHHHHHHHhcchhhhhHHHhhcCCCCCcccccCCeeehh
Confidence 45555655 67888885 873 3 8899999999999988877754
No 46
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=44.51 E-value=19 Score=28.38 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=18.5
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..|.|.+|+||.+.+++.|.
T Consensus 10 g~~~~~~~g~til~a~~~~gi 30 (234)
T PRK07569 10 DQLVSAREGETLLEAAREAGI 30 (234)
T ss_pred CEEEEeCCCCHHHHHHHHcCC
Confidence 455999999999999999884
No 47
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=41.71 E-value=28 Score=23.10 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 033289 18 ADAASWYCAIVILALILIGSIRG 40 (122)
Q Consensus 18 ~~~~s~~~al~l~allll~s~~~ 40 (122)
....+|.+++++++.+..|+-++
T Consensus 2 k~~~~s~~ala~l~sLA~CG~KG 24 (58)
T COG5567 2 KNVFKSLLALATLFSLAGCGLKG 24 (58)
T ss_pred hhHHHHHHHHHHHHHHHhcccCC
Confidence 35677888777777555665543
No 48
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=39.25 E-value=4.2 Score=24.97 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.7
Q ss_pred EeccCChHHHHH
Q 033289 71 VVGEGETLHTIS 82 (122)
Q Consensus 71 ~Vk~GDTL~~IA 82 (122)
.||+||+|+.|-
T Consensus 23 ~VkkGd~L~~ld 34 (50)
T PF13533_consen 23 QVKKGDVLLVLD 34 (50)
T ss_pred EEcCCCEEEEEC
Confidence 589999997664
No 49
>PF05373 Pro_3_hydrox_C: L-proline 3-hydroxylase, C-terminal; InterPro: IPR008035 Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyse oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalysing oxidation of a free alpha-amino acid. The structure contains conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. The structure differs significantly from many other 2-OG oxygenases in possessing a discrete C-terminal helical domain.; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 1E5S_A 1E5R_B.
Probab=37.65 E-value=21 Score=25.97 Aligned_cols=18 Identities=39% Similarity=0.697 Sum_probs=14.3
Q ss_pred ChHHHHHHHhCChhhhhh
Q 033289 76 ETLHTISDKCGDPFIVER 93 (122)
Q Consensus 76 DTL~~IA~~~g~~~il~~ 93 (122)
|+|-+||.+.||+.++++
T Consensus 68 DWL~eia~rsGD~alv~k 85 (101)
T PF05373_consen 68 DWLIEIARRSGDPALVEK 85 (101)
T ss_dssp HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 899999999999875543
No 50
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=35.63 E-value=33 Score=23.78 Aligned_cols=43 Identities=33% Similarity=0.367 Sum_probs=27.3
Q ss_pred EEeccCChHHHHHHHhCC-hhhhhhCCCC--CCC----CCcCCCcEEEEeCCC
Q 033289 70 YVVGEGETLHTISDKCGD-PFIVERNPHI--HDP----DDVFPGLVIKIISPS 115 (122)
Q Consensus 70 Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I--~~P----~~I~PGqviri~~~~ 115 (122)
++|=.-|---++-.+|+. +.. -|.| +|| .-..|||+|+|.-++
T Consensus 15 H~iLs~eE~~~lL~~y~i~~~q---LP~I~~~DPv~r~~g~k~GdVvkI~R~S 64 (79)
T PRK09570 15 HEILSEEEAKKLLKEYGIKPEQ---LPKIKASDPVVKAIGAKPGDVIKIVRKS 64 (79)
T ss_pred eEECCHHHHHHHHHHcCCCHHH---CCceeccChhhhhcCCCCCCEEEEEECC
Confidence 555555556677777863 221 2444 466 477899999996665
No 51
>PRK10722 hypothetical protein; Provisional
Probab=34.25 E-value=77 Score=26.45 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=12.2
Q ss_pred cEEeccCChHHHHHHH
Q 033289 69 IYVVGEGETLHTISDK 84 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~ 84 (122)
.|.-..=|+||+|...
T Consensus 54 Dyr~~~C~~iW~~~~~ 69 (247)
T PRK10722 54 DYRSTECDDIWALQGK 69 (247)
T ss_pred hhhhccHhHHhcccCc
Confidence 4777888888888655
No 52
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=34.05 E-value=68 Score=21.92 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=39.0
Q ss_pred CCccEEeccCChHHHHHHHhCChh----hhhhCCCCCCC-CCcCCCcEEEEeCCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDPF----IVERNPHIHDP-DDVFPGLVIKIISPST 116 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~~----il~~n~~I~~P-~~I~PGqviri~~~~~ 116 (122)
..-.|...+|-|+-.+-+..|.|. ++.-|-.-.++ +.+.+|+.|.+.|...
T Consensus 23 ~~~~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~P~~~ 78 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVYPVFR 78 (81)
T ss_pred CceEEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEEeccc
Confidence 345588999999999999999874 45555433454 8899999999977653
No 53
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.85 E-value=45 Score=18.57 Aligned_cols=9 Identities=33% Similarity=0.623 Sum_probs=5.8
Q ss_pred HHHHHHhhc
Q 033289 30 LALILIGSI 38 (122)
Q Consensus 30 ~allll~s~ 38 (122)
++++.|++|
T Consensus 15 ~a~~~LagC 23 (25)
T PF08139_consen 15 LALFMLAGC 23 (25)
T ss_pred HHHHHHhhc
Confidence 445567777
No 54
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=33.67 E-value=30 Score=23.51 Aligned_cols=23 Identities=35% Similarity=0.756 Sum_probs=19.4
Q ss_pred CCccEEeccCChHHHHHHHhCChh
Q 033289 66 CDEIYVVGEGETLHTISDKCGDPF 89 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~~ 89 (122)
|+ .-.|..||+.+++=.+||.|.
T Consensus 8 Cg-~~lVs~Gds~~eVl~kCGeP~ 30 (87)
T PF11006_consen 8 CG-GSLVSEGDSKAEVLAKCGEPA 30 (87)
T ss_pred cC-CCCccCCCCHHHHHHhCCCCC
Confidence 53 467999999999999999763
No 55
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=33.22 E-value=54 Score=18.47 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=30.4
Q ss_pred CccEEeccCChHHHHHHHhCCh-----hhhhhCCCCCCC-CCcCCCcEEEE
Q 033289 67 DEIYVVGEGETLHTISDKCGDP-----FIVERNPHIHDP-DDVFPGLVIKI 111 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~-----~il~~n~~I~~P-~~I~PGqviri 111 (122)
+..|.+.+|-|+.+++.+.... ....-|.++.+- +.+..|+.|.+
T Consensus 8 ~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~ 58 (60)
T cd01616 8 GSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSI 58 (60)
T ss_pred CCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEE
Confidence 4568899999999999987532 133455666555 34567777765
No 56
>PRK02710 plastocyanin; Provisional
Probab=33.13 E-value=58 Score=23.07 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=9.7
Q ss_pred CccEEeccCChH
Q 033289 67 DEIYVVGEGETL 78 (122)
Q Consensus 67 ~~~Y~Vk~GDTL 78 (122)
+...+|++|||+
T Consensus 46 P~~i~v~~Gd~V 57 (119)
T PRK02710 46 PSTLTIKAGDTV 57 (119)
T ss_pred CCEEEEcCCCEE
Confidence 456899999984
No 57
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=33.12 E-value=2.4e+02 Score=24.24 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.3
Q ss_pred CCCCcCCCcEEEEeC
Q 033289 99 DPDDVFPGLVIKIIS 113 (122)
Q Consensus 99 ~P~~I~PGqviri~~ 113 (122)
.+|.|-|||+|.|.-
T Consensus 83 ~~Y~igpGDvL~I~V 97 (379)
T PRK15078 83 YEYRVGPGDVLNVTV 97 (379)
T ss_pred CCcEECCCCEEEEEE
Confidence 468999999998854
No 58
>COG5510 Predicted small secreted protein [Function unknown]
Probab=32.65 E-value=47 Score=20.93 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 033289 21 ASWYCAIVILALILIGSIR 39 (122)
Q Consensus 21 ~s~~~al~l~allll~s~~ 39 (122)
....+++++++.+++.+|.
T Consensus 5 t~l~i~~vll~s~llaaCN 23 (44)
T COG5510 5 TILLIALVLLASTLLAACN 23 (44)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445666667778899993
No 59
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=31.27 E-value=38 Score=26.10 Aligned_cols=10 Identities=10% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHHHhhcC
Q 033289 30 LALILIGSIR 39 (122)
Q Consensus 30 ~allll~s~~ 39 (122)
++.++|++|.
T Consensus 9 ~~al~LaGCa 18 (145)
T PRK13835 9 ILALLLSGCQ 18 (145)
T ss_pred HHHHHHhccc
Confidence 3455677783
No 60
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=30.10 E-value=61 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.0
Q ss_pred CCCccEEeccCChHHHHHHHhCCh
Q 033289 65 PCDEIYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 65 ~~~~~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
|.+..+.|.+|+||.+.+.+.|.+
T Consensus 13 p~~~~~~~~~g~tLL~a~~~~gi~ 36 (110)
T TIGR02007 13 PEGAVVEAKPGETILDVALDNGIE 36 (110)
T ss_pred CCCeEEEECCCChHHHHHHHcCCC
Confidence 345679999999999999998753
No 61
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=29.93 E-value=48 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred hhhhCC-CCCCCCCcCCCcEEEEeCCCCC
Q 033289 90 IVERNP-HIHDPDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 90 il~~n~-~I~~P~~I~PGqviri~~~~~~ 117 (122)
.++-|. .+.+-..|.+||.|.|.||..|
T Consensus 51 ~v~vn~~~v~~~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 51 MVAVNEEYVTDDALLNEGDEVAFIPPVSG 79 (80)
T ss_pred EEEECCEEcCCCcCcCCCCEEEEeCCCCC
Confidence 456664 4456688999999999999755
No 62
>PHA02578 53 baseplate wedge subunit; Provisional
Probab=29.76 E-value=50 Score=26.38 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=30.5
Q ss_pred CCccEEeccCChHHHHHHH-hCCh---hhhhhCCCCCCCC
Q 033289 66 CDEIYVVGEGETLHTISDK-CGDP---FIVERNPHIHDPD 101 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~-~g~~---~il~~n~~I~~P~ 101 (122)
..+.|.++.|..=-+||.+ ||++ ||+-.-|+|.||.
T Consensus 35 ~~~~Y~I~gg~RPE~vA~~lYGn~~LyWIlLm~N~i~Dp~ 74 (181)
T PHA02578 35 TLRTYYITGSPRPEQLAHELYGNQQLYWVLLMLNDNYDPF 74 (181)
T ss_pred cceEEEeCCCCCHHHHHHHHhCCccceeeeeeecCCcccc
Confidence 4677999999999999999 5975 6777888898993
No 63
>PRK15396 murein lipoprotein; Provisional
Probab=29.31 E-value=63 Score=22.30 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhcC
Q 033289 24 YCAIVILALILIGSIR 39 (122)
Q Consensus 24 ~~al~l~allll~s~~ 39 (122)
.++.++++++||.||.
T Consensus 7 ~l~av~ls~~LLaGCA 22 (78)
T PRK15396 7 VLGAVILGSTLLAGCS 22 (78)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3334445556788883
No 64
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=29.19 E-value=45 Score=19.78 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.5
Q ss_pred ccCChHHHHHHHhCC
Q 033289 73 GEGETLHTISDKCGD 87 (122)
Q Consensus 73 k~GDTL~~IA~~~g~ 87 (122)
+.|-|..+||..+|.
T Consensus 19 ~~G~si~~IA~~~gv 33 (45)
T PF02796_consen 19 AEGMSIAEIAKQFGV 33 (45)
T ss_dssp HTT--HHHHHHHTTS
T ss_pred HCCCCHHHHHHHHCc
Confidence 578899999999995
No 65
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=28.14 E-value=53 Score=18.27 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 033289 23 WYCAIVILALILIGSI 38 (122)
Q Consensus 23 ~~~al~l~allll~s~ 38 (122)
..+.+++++.+.+|+|
T Consensus 8 livVLFILLiIvG~s~ 23 (24)
T PF09680_consen 8 LIVVLFILLIIVGASC 23 (24)
T ss_pred hHHHHHHHHHHhccee
Confidence 3445555666667776
No 66
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=27.26 E-value=70 Score=20.19 Aligned_cols=21 Identities=33% Similarity=0.275 Sum_probs=18.0
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..+.|++|+||-..+.+.|.
T Consensus 9 ~~~~~~~~g~~ll~al~~~g~ 29 (84)
T cd00207 9 GVEVEVPEGETLLDAAREAGI 29 (84)
T ss_pred CEEEEECCCCcHHHHHHHcCC
Confidence 445899999999999999874
No 67
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=26.93 E-value=39 Score=22.36 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=5.7
Q ss_pred CCCCCcCCCcEEEEe
Q 033289 98 HDPDDVFPGLVIKII 112 (122)
Q Consensus 98 ~~P~~I~PGqviri~ 112 (122)
...|.|.|||+|+|.
T Consensus 8 ~~~y~l~pGD~l~i~ 22 (82)
T PF02563_consen 8 PPEYRLGPGDVLRIS 22 (82)
T ss_dssp T------TT-EEEEE
T ss_pred CCCCEECCCCEEEEE
Confidence 356788888888874
No 68
>KOG1625 consensus DNA polymerase alpha-primase complex, polymerase-associated subunit B [Replication, recombination and repair]
Probab=26.50 E-value=39 Score=31.42 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=14.6
Q ss_pred CCcCCCcEEEEeCCC-CCCcc
Q 033289 101 DDVFPGLVIKIISPS-TPRKL 120 (122)
Q Consensus 101 ~~I~PGqviri~~~~-~~~~~ 120 (122)
+.|||||++.+.... +|++|
T Consensus 293 ~SiFPGQIVavkG~N~~G~~l 313 (600)
T KOG1625|consen 293 YSIFPGQIVAVKGKNPTGEKL 313 (600)
T ss_pred eeecCCcEEEEeeecCCCCeE
Confidence 899999999984332 55554
No 69
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=26.36 E-value=1.1e+02 Score=22.77 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=9.4
Q ss_pred CCCCcCCCcEEEE
Q 033289 99 DPDDVFPGLVIKI 111 (122)
Q Consensus 99 ~P~~I~PGqviri 111 (122)
+-..+.|||...+
T Consensus 86 ~e~~l~PG~~~~~ 98 (146)
T TIGR03352 86 DEIILLPGEKRKI 98 (146)
T ss_pred ceEEECCCCeeEe
Confidence 3457889987766
No 70
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=25.53 E-value=1.3e+02 Score=19.02 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred CccEEeccCChHHHHHHHhCCh---hhhhhCCCCCC----CCCcCCCcEEEEeCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP---FIVERNPHIHD----PDDVFPGLVIKIISPST 116 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~----P~~I~PGqviri~~~~~ 116 (122)
++.|.+.++-||.++-...|.+ ..++-|..|-. ...+..|++|-|.++-.
T Consensus 7 G~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~Vg 63 (65)
T PRK05863 7 EEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTAVQ 63 (65)
T ss_pred CEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEeecc
Confidence 4568888999999999998843 25666766421 13589999998866543
No 71
>PF13518 HTH_28: Helix-turn-helix domain
Probab=25.36 E-value=44 Score=19.39 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.0
Q ss_pred ccCChHHHHHHHhCC
Q 033289 73 GEGETLHTISDKCGD 87 (122)
Q Consensus 73 k~GDTL~~IA~~~g~ 87 (122)
.+|.|+-.||.+||.
T Consensus 10 ~~g~s~~~~a~~~gi 24 (52)
T PF13518_consen 10 LEGESVREIAREFGI 24 (52)
T ss_pred HcCCCHHHHHHHHCC
Confidence 368899999999994
No 72
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=25.22 E-value=43 Score=25.25 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=15.5
Q ss_pred hhhhCCCC-CCCCCcCCCcEEEE
Q 033289 90 IVERNPHI-HDPDDVFPGLVIKI 111 (122)
Q Consensus 90 il~~n~~I-~~P~~I~PGqviri 111 (122)
=++.||.. .++-.|.|++...|
T Consensus 83 Gle~~~~es~~si~l~~~e~vsi 105 (123)
T COG5633 83 GLEQNPLESPRSITLPGHEAVSI 105 (123)
T ss_pred CceeccccCCcceEecCCceEEE
Confidence 46777776 34567778887777
No 73
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=24.44 E-value=78 Score=24.23 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=6.4
Q ss_pred HHHHHHHhhcC
Q 033289 29 ILALILIGSIR 39 (122)
Q Consensus 29 l~allll~s~~ 39 (122)
++++++|+||.
T Consensus 9 ~~~~llL~gCa 19 (202)
T PRK00022 9 LLAALLLAGCA 19 (202)
T ss_pred HHHHHHHHhCC
Confidence 34445677883
No 74
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=24.36 E-value=73 Score=20.15 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=30.9
Q ss_pred EEeccCChHHHHHHH----hCC-------hhhhhhCCCC-CCCCCcCCCcEEEEeCCCCC
Q 033289 70 YVVGEGETLHTISDK----CGD-------PFIVERNPHI-HDPDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 70 Y~Vk~GDTL~~IA~~----~g~-------~~il~~n~~I-~~P~~I~PGqviri~~~~~~ 117 (122)
+.+.+|-|+.++-+. |+. ...++-|-.+ ..-..|..||.|.|.||-.|
T Consensus 20 ~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 20 LELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred EECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCCCCC
Confidence 445556777666554 322 1246667544 44578999999999898755
No 75
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=23.77 E-value=2.1e+02 Score=24.58 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=6.5
Q ss_pred CCcCCCcEEEE
Q 033289 101 DDVFPGLVIKI 111 (122)
Q Consensus 101 ~~I~PGqviri 111 (122)
+.|-|||+|.|
T Consensus 70 ~~ig~GDvL~I 80 (355)
T PRK15175 70 TSLAKGDVLHI 80 (355)
T ss_pred ceECCCCEEEE
Confidence 55666666655
No 76
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=23.28 E-value=1.1e+02 Score=22.15 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.9
Q ss_pred EeccCChHHHHHHHhCChh
Q 033289 71 VVGEGETLHTISDKCGDPF 89 (122)
Q Consensus 71 ~Vk~GDTL~~IA~~~g~~~ 89 (122)
.|+.|+|=-++....|.|.
T Consensus 35 qv~~GmTr~qV~~~lGtP~ 53 (109)
T PRK11251 35 DVKKGMTRQQVAQIAGKPS 53 (109)
T ss_pred HcCCCCCHHHHHHHcCCCC
Confidence 5789999999998888763
No 77
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=23.06 E-value=58 Score=22.46 Aligned_cols=15 Identities=20% Similarity=0.539 Sum_probs=13.4
Q ss_pred eccCChHHHHHHHhC
Q 033289 72 VGEGETLHTISDKCG 86 (122)
Q Consensus 72 Vk~GDTL~~IA~~~g 86 (122)
.+.|+|+.+||.+||
T Consensus 21 ~~~g~sv~~vAr~~g 35 (116)
T COG2963 21 LRGGDTVSEVAREFG 35 (116)
T ss_pred HhcCccHHHHHHHhC
Confidence 457899999999999
No 78
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.74 E-value=1.8e+02 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC
Q 033289 14 SATLADAASWYCAIVILALILIGSIR 39 (122)
Q Consensus 14 ~~~~~~~~s~~~al~l~allll~s~~ 39 (122)
+-+.++....+-.++++++++|.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~L~gCa 34 (246)
T PRK12699 9 SFSARRRGRLLGPVLIVMLALVGGCS 34 (246)
T ss_pred hhhhhhcccchHHHHHHHHHHhhccc
Confidence 33444555566666767767778884
No 79
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=22.07 E-value=85 Score=21.41 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=18.5
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..+.|.+|+||-+.+.+.|.
T Consensus 14 ~~~~~~~~g~tLLda~~~~Gi 34 (97)
T TIGR02008 14 EETIECPDDQYILDAAEEAGI 34 (97)
T ss_pred EEEEEECCCCcHHHHHHHcCC
Confidence 356999999999999999985
No 80
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=21.77 E-value=56 Score=19.76 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=12.2
Q ss_pred eccC-ChHHHHHHHhCChh
Q 033289 72 VGEG-ETLHTISDKCGDPF 89 (122)
Q Consensus 72 Vk~G-DTL~~IA~~~g~~~ 89 (122)
|+.| -++.+.|.+||.|+
T Consensus 12 v~~g~~S~r~AA~~ygVp~ 30 (45)
T PF05225_consen 12 VKNGKMSIRKAAKKYGVPR 30 (45)
T ss_dssp HHTTSS-HHHHHHHHT--H
T ss_pred HHhCCCCHHHHHHHHCcCH
Confidence 4456 88999999999875
No 81
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=21.14 E-value=1.1e+02 Score=21.66 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhcC
Q 033289 26 AIVILALILIGSIR 39 (122)
Q Consensus 26 al~l~allll~s~~ 39 (122)
+.+++.++||.||.
T Consensus 8 ~aviLs~~LLaGCA 21 (85)
T PRK09973 8 GAVVLATCLLSGCV 21 (85)
T ss_pred HHHHHHHHHHHHcC
Confidence 33334456788883
No 82
>TIGR02722 lp_ uncharacterized proteobacterial lipoprotein. Members of this protein family are restricted to the Proteobacteria, and all are predicted lipoproteins. In genomes that contain the thiK gene for the salvage enzyme thiamin kinase, the member of this family is encoded nearby.
Probab=21.03 E-value=1.4e+02 Score=22.91 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=7.4
Q ss_pred HHHHHHHHhhcC
Q 033289 28 VILALILIGSIR 39 (122)
Q Consensus 28 ~l~allll~s~~ 39 (122)
++++.++++||.
T Consensus 8 ~~~~al~l~gC~ 19 (189)
T TIGR02722 8 VALLALLLSGCV 19 (189)
T ss_pred HHHHHHHHccCC
Confidence 334556788883
No 83
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=21.01 E-value=39 Score=21.24 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=14.2
Q ss_pred eccCChHHHHHHHhCC
Q 033289 72 VGEGETLHTISDKCGD 87 (122)
Q Consensus 72 Vk~GDTL~~IA~~~g~ 87 (122)
...|.|+.+||.+||.
T Consensus 20 ~~~g~sv~~va~~~gi 35 (76)
T PF01527_consen 20 LESGESVSEVAREYGI 35 (76)
T ss_dssp HHHHCHHHHHHHHHTS
T ss_pred HHCCCceEeeeccccc
Confidence 3689999999999995
No 84
>PHA00407 phage lambda Rz1-like protein
Probab=20.99 E-value=2.4e+02 Score=19.91 Aligned_cols=27 Identities=19% Similarity=-0.039 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 033289 17 LADAASWYCAIVILALILIGSIRGNSLA 44 (122)
Q Consensus 17 ~~~~~s~~~al~l~allll~s~~~~~ap 44 (122)
..+++...+.+..++.+-+|++ ++..|
T Consensus 30 rwkaaLIGlllicv~tISGCaS-es~lp 56 (84)
T PHA00407 30 RWKAALIGLLLICVATISGCAS-ESNLP 56 (84)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-cccCC
Confidence 3444444444444555556655 44444
No 85
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=20.18 E-value=19 Score=22.72 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=32.8
Q ss_pred cEEeccCChHHHHHHHhC---------ChhhhhhCCCC-CC---CCCcCCCcEEEEeCCCCC
Q 033289 69 IYVVGEGETLHTISDKCG---------DPFIVERNPHI-HD---PDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g---------~~~il~~n~~I-~~---P~~I~PGqviri~~~~~~ 117 (122)
.-.+..|-|+.++-...+ +...++-|..+ .+ -..+..|+.|.|.||-.|
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEESTST
T ss_pred EEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECCCCC
Confidence 355667777777666643 22356667544 44 477899999999898754
No 86
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=20.13 E-value=1.1e+02 Score=19.35 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=16.8
Q ss_pred ccEEeccCCh-HHHHHHHh-CC
Q 033289 68 EIYVVGEGET-LHTISDKC-GD 87 (122)
Q Consensus 68 ~~Y~Vk~GDT-L~~IA~~~-g~ 87 (122)
..+.|.+|+| |.+.+++. |.
T Consensus 8 ~~~~~~~~~~~ll~~~~~~~gi 29 (78)
T PF00111_consen 8 VTVEVPPGETLLLDALERAGGI 29 (78)
T ss_dssp EEEEEETTSBBHHHHHHHTTTT
T ss_pred EEEEeCCCccHHHHHHHHcCCC
Confidence 3577899999 99999998 53
No 87
>PF13617 Lipoprotein_19: YnbE-like lipoprotein
Probab=20.11 E-value=68 Score=21.14 Aligned_cols=15 Identities=0% Similarity=0.080 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhcC
Q 033289 25 CAIVILALILIGSIR 39 (122)
Q Consensus 25 ~al~l~allll~s~~ 39 (122)
++++++++++++||.
T Consensus 3 l~~~~~~~~~l~gCt 17 (59)
T PF13617_consen 3 LLLLLALALALTGCT 17 (59)
T ss_pred hHHHHHHHHHHccCC
Confidence 445556677888993
Done!