Query 033289
Match_columns 122
No_of_seqs 151 out of 331
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9y_A CVNH-LYSM lectin; carbo 99.6 1E-15 3.5E-20 115.5 3.9 49 66-115 61-110 (167)
2 1e0g_A Membrane-bound lytic mu 99.5 3.3E-14 1.1E-18 84.7 4.4 43 68-114 3-47 (48)
3 2djp_A Hypothetical protein SB 99.4 4.5E-14 1.5E-18 92.6 2.2 45 67-111 15-60 (77)
4 4eby_A Chitin elicitor recepto 99.2 2.5E-11 8.4E-16 94.3 5.2 44 68-111 10-63 (212)
5 4eby_A Chitin elicitor recepto 98.9 6.1E-10 2.1E-14 86.5 3.9 42 68-111 79-125 (212)
6 4a1k_A Putative L, D-transpept 98.7 1.2E-08 4.2E-13 76.1 3.7 42 68-111 3-46 (165)
7 2gu1_A Zinc peptidase; alpha/b 98.4 5.4E-08 1.8E-12 79.9 2.0 47 66-112 6-57 (361)
8 2gu1_A Zinc peptidase; alpha/b 97.4 4.9E-05 1.7E-09 62.3 2.2 45 68-112 101-151 (361)
9 3slu_A M23 peptidase domain pr 97.4 0.00015 5.1E-09 60.5 5.0 49 66-114 13-66 (371)
10 2l9y_A CVNH-LYSM lectin; carbo 96.4 4.7E-05 1.6E-09 57.0 -5.9 35 67-101 125-161 (167)
11 2kmm_A Guanosine-3',5'-BIS(dip 65.6 11 0.00037 22.8 4.4 52 67-118 10-67 (73)
12 2l32_A Small archaeal modifier 65.6 9.2 0.00031 24.5 4.2 48 69-116 14-64 (74)
13 1ryj_A Unknown; beta/alpha pro 59.9 12 0.00039 23.3 3.8 49 69-117 17-69 (70)
14 2cu3_A Unknown function protei 57.0 4.6 0.00016 24.7 1.5 50 67-117 6-63 (64)
15 1tyg_B YJBS; alpha beta barrel 51.6 8 0.00027 25.8 2.1 52 66-117 26-86 (87)
16 1f0z_A THis protein; ubiquitin 51.5 5.7 0.00019 24.3 1.2 51 67-117 7-65 (66)
17 2kl0_A Putative thiamin biosyn 46.9 11 0.00037 24.0 2.1 49 67-116 7-63 (73)
18 1y56_A Hypothetical protein PH 43.2 13 0.00043 30.5 2.4 36 66-103 21-56 (493)
19 1rws_A Hypothetical protein PF 42.5 6.8 0.00023 24.8 0.6 52 66-117 21-76 (77)
20 3ah7_A [2Fe-2S]ferredoxin; [2F 39.1 20 0.00067 23.8 2.5 22 66-87 15-36 (113)
21 2k5p_A THis protein, thiamine- 37.0 28 0.00095 22.4 2.9 51 67-117 7-68 (78)
22 1frr_A Ferredoxin I; electron 36.9 22 0.00076 22.5 2.4 20 68-87 13-32 (95)
23 3c75_A Amicyanin; copper prote 35.9 6.7 0.00023 27.2 -0.3 12 67-78 59-70 (132)
24 1frd_A Heterocyst [2Fe-2S] fer 34.4 24 0.00083 22.6 2.3 21 67-87 15-35 (98)
25 1i7h_A Ferredoxin; 2Fe-2S,elec 33.8 27 0.00091 23.1 2.5 21 66-86 15-35 (111)
26 2bt6_A Adrenodoxin 1; rutheniu 33.0 26 0.00089 23.0 2.3 19 69-87 20-38 (108)
27 1jq4_A Methane monooxygenase c 31.9 29 0.00099 22.3 2.4 21 67-87 16-36 (98)
28 1uwm_A Ferredoxin VI, FDVI; el 31.3 25 0.00087 22.9 2.0 21 68-88 13-33 (106)
29 1xlq_A Putidaredoxin, PDX; [2F 31.2 29 0.001 22.6 2.3 21 68-88 13-33 (106)
30 2wlb_A ETP1-FD, electron trans 30.3 33 0.0011 22.2 2.4 20 68-87 16-35 (103)
31 2qn4_A RASI, alpha-amylase/sub 30.1 30 0.001 26.2 2.5 21 49-72 24-44 (200)
32 3rpf_C Molybdopterin convertin 30.1 61 0.0021 19.9 3.6 49 68-117 14-73 (74)
33 2y5c_A Adrenodoxin-like protei 29.0 33 0.0011 22.6 2.3 18 70-87 20-37 (109)
34 1wri_A Ferredoxin II, ferredox 28.3 37 0.0013 21.7 2.4 19 68-86 13-31 (93)
35 1awd_A Ferredoxin; electron tr 28.0 34 0.0012 21.9 2.1 20 68-87 12-31 (94)
36 1iue_A Ferredoxin; electron tr 26.8 39 0.0013 21.8 2.3 20 68-87 14-33 (98)
37 1a70_A Ferredoxin; iron-sulfur 26.5 40 0.0014 21.7 2.3 20 68-87 14-33 (97)
38 1czp_A Ferredoxin I; [2Fe-2S] 25.9 41 0.0014 21.6 2.3 20 68-87 16-35 (98)
39 4edp_A ABC transporter, substr 24.1 16 0.00055 26.9 0.0 10 31-40 18-27 (351)
40 2j58_A WZA, outer membrane lip 24.1 70 0.0024 25.8 3.8 49 66-115 161-232 (359)
41 3u7d_B Protein HEG homolog 1; 23.5 21 0.0007 19.3 0.3 8 101-108 4-11 (26)
42 3lxf_A Ferredoxin; iron, iron- 23.1 50 0.0017 21.7 2.3 20 69-88 14-33 (104)
43 2lfc_A Fumarate reductase, fla 23.0 40 0.0014 23.7 1.9 17 71-87 91-107 (160)
44 1l5p_A Ferredoxin; [2Fe-2S] cl 22.8 35 0.0012 21.9 1.4 20 69-88 13-32 (93)
45 1b9r_A Protein (terpredoxin); 22.6 29 0.001 22.6 1.0 21 68-88 13-33 (105)
46 1doi_A 2Fe-2S ferredoxin; halo 20.2 61 0.0021 22.4 2.4 19 69-87 39-57 (128)
47 3hui_A Ferredoxin; cytochrome 20.1 56 0.0019 22.6 2.2 20 68-87 34-53 (126)
No 1
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.57 E-value=1e-15 Score=115.50 Aligned_cols=49 Identities=22% Similarity=0.439 Sum_probs=41.8
Q ss_pred CCccEEeccCChHHHHHHHhCCh-hhhhhCCCCCCCCCcCCCcEEEEeCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP-FIVERNPHIHDPDDVFPGLVIKIISPS 115 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~-~il~~n~~I~~P~~I~PGqviri~~~~ 115 (122)
....|+||+|||||+||++||.. ..|.++|+|.||+.|||||+|+| |..
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~i-p~~ 110 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQV-PTK 110 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEE-SCC
T ss_pred CCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEE-cCC
Confidence 45789999999999999999964 45566668999999999999999 543
No 2
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.47 E-value=3.3e-14 Score=84.73 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=36.9
Q ss_pred ccEEeccCChHHHHHHHhCCh-h-hhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289 68 EIYVVGEGETLHTISDKCGDP-F-IVERNPHIHDPDDVFPGLVIKIISP 114 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~-~-il~~n~~I~~P~~I~PGqviri~~~ 114 (122)
..|+|++|||||+||.+||.. . +.+.|+ +|+.|+|||+|+| |.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~i-p~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTL-FV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEEC-CC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEE-ec
Confidence 469999999999999999954 3 666676 8999999999999 53
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-14 Score=92.58 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=39.0
Q ss_pred CccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCCCCcCCCcEEEE
Q 033289 67 DEIYVVGEGETLHTISDKCGD-PFIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P~~I~PGqviri 111 (122)
...|+||+|||||+||++||. ...+.+.|++.+|+.|+|||+|+|
T Consensus 15 ~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~i 60 (77)
T 2djp_A 15 RLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYI 60 (77)
T ss_dssp EEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEE
T ss_pred cEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEE
Confidence 346999999999999999995 445666668999999999999999
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.16 E-value=2.5e-11 Score=94.34 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=39.1
Q ss_pred ccEEeccCChHHHHHHHhC-Ch--------h-hhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTISDKCG-DP--------F-IVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g-~~--------~-il~~n~~I~~P~~I~PGqviri 111 (122)
..|+||+|||||+||.+|| .. . |.+.||+|.||+.|++||+|+|
T Consensus 10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~I 63 (212)
T 4eby_A 10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLV 63 (212)
T ss_dssp EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEE
Confidence 4699999999999999998 43 4 6677779999999999999999
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=98.91 E-value=6.1e-10 Score=86.48 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=35.4
Q ss_pred ccEEeccCChHHHHH-HHhC--Ch--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTIS-DKCG--DP--FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA-~~~g--~~--~il~~n~~I~~P~~I~PGqviri 111 (122)
..|+||+|||||+|| ++|| .. .+.+.|+ .+|+.|+|||+|+|
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~--~~~~~l~~Gq~L~I 125 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP--FPATNIPLSATLNV 125 (212)
T ss_dssp EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC--SCTTCCCTTCEEEE
T ss_pred eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC--CCcccCCCCCEEEE
Confidence 569999999999999 7898 54 3566666 47899999999999
No 6
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.66 E-value=1.2e-08 Score=76.07 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=36.2
Q ss_pred ccEEeccCChHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEE
Q 033289 68 EIYVVGEGETLHTISDKCGDP--FIVERNPHIHDPDDVFPGLVIKI 111 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~~I~PGqviri 111 (122)
..|+||+||||.+||++|+.. .+.++||.+ ||. +.+||.|.|
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~~-l~~g~~i~i 46 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSL-QAG-LTAGQSIVI 46 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GGC-CCTTCEEEE
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CCc-cCCCccccC
Confidence 469999999999999999843 489999987 565 689999998
No 7
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.44 E-value=5.4e-08 Score=79.87 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCccEEeccCChHHHHHHHhCC-hhhhhhCCCC----CCCCCcCCCcEEEEe
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-PFIVERNPHI----HDPDDVFPGLVIKII 112 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I----~~P~~I~PGqviri~ 112 (122)
....|+||+|||||+||++||. ...+.+.|++ .+++.|+|||.|+|.
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~ 57 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELM 57 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEE
T ss_pred CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEE
Confidence 3567999999999999999995 4444443333 358999999999994
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.42 E-value=4.9e-05 Score=62.27 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=34.1
Q ss_pred ccEEeccCChHHHHHHHhCC-hhhhhhCCCCCCC-----CCcCCCcEEEEe
Q 033289 68 EIYVVGEGETLHTISDKCGD-PFIVERNPHIHDP-----DDVFPGLVIKII 112 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~-~~il~~n~~I~~P-----~~I~PGqviri~ 112 (122)
..|+|+.|||||+||.++|. +..+.++++|... ..|+|||.++|.
T Consensus 101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 35899999999999999995 4555555555433 569999999983
No 9
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.40 E-value=0.00015 Score=60.46 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=35.3
Q ss_pred CCccEEeccCChHHHHHHHhCC-h----hhhhhCCCCCCCCCcCCCcEEEEeCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGD-P----FIVERNPHIHDPDDVFPGLVIKIISP 114 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~-~----~il~~n~~I~~P~~I~PGqviri~~~ 114 (122)
....|+|++||||.+|-.++|. . .++++.....+...|.|||.|++.-.
T Consensus 13 ~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~ 66 (371)
T 3slu_A 13 YWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVG 66 (371)
T ss_dssp EEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEEC
T ss_pred ceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEEC
Confidence 3567999999999999999994 2 25666677779999999999999443
No 10
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=96.36 E-value=4.7e-05 Score=57.01 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=30.5
Q ss_pred CccEEeccCChHHHHHHHhCCh--hhhhhCCCCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP--FIVERNPHIHDPD 101 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~--~il~~n~~I~~P~ 101 (122)
...|+|++||||++||.++|.. .++..|++|.|+|
T Consensus 125 ~~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N~n 161 (167)
T 2l9y_A 125 RDVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNRN 161 (167)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEECGGGTEEESS
T ss_pred ceEEEeCCcCChHHHHHHcCCceEEEEEcccccCcCC
Confidence 3579999999999999999854 4888999999987
No 11
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=65.61 E-value=11 Score=22.82 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=37.3
Q ss_pred CccEEeccCChHHHHHHHhCCh---h--hhhhCCCCCCC-CCcCCCcEEEEeCCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP---F--IVERNPHIHDP-DDVFPGLVIKIISPSTPR 118 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~---~--il~~n~~I~~P-~~I~PGqviri~~~~~~~ 118 (122)
++.+.+.+|-|+.++|.+.+.. . ..+-|..+.+. ..|..|+.|.|......+
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred CCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 4568899999999999998632 2 23447777666 567799999986655443
No 12
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=65.58 E-value=9.2 Score=24.48 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=39.8
Q ss_pred cEEeccCChHHHHHHHhCCh---hhhhhCCCCCCCCCcCCCcEEEEeCCCC
Q 033289 69 IYVVGEGETLHTISDKCGDP---FIVERNPHIHDPDDVFPGLVIKIISPST 116 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~P~~I~PGqviri~~~~~ 116 (122)
.+.+.+|-|+.++-.+.|.+ .++..|-.+-.++.+-.|+.|.|.+.-.
T Consensus 14 ~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeIv~~V~ 64 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKVLRLIK 64 (74)
T ss_dssp EEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEECSSCS
T ss_pred eEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEEEEeec
Confidence 47899999999999999943 3788888888898888899999965543
No 13
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=59.88 E-value=12 Score=23.32 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=38.0
Q ss_pred cEEeccCChHHHHHHHhCC-h--hhhhhCCCCCCC-CCcCCCcEEEEeCCCCC
Q 033289 69 IYVVGEGETLHTISDKCGD-P--FIVERNPHIHDP-DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~-~--~il~~n~~I~~P-~~I~PGqviri~~~~~~ 117 (122)
.+.+.+|-|+.++-.+.+. + ..++.|-.+-++ ..+.+|+.|.|.||-.|
T Consensus 17 ~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~~V~G 69 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYG 69 (70)
T ss_dssp EEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEECTTC
T ss_pred eEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEecccc
Confidence 4888899999999999873 2 267888766444 58999999999888654
No 14
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=57.00 E-value=4.6 Score=24.67 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=37.4
Q ss_pred CccEEeccCChHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD-P--FIVERNPHIHDP-----DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~--~il~~n~~I~~P-----~~I~PGqviri~~~~~~ 117 (122)
++.+.+ +|-|+.++-...+. + ..++-|-.+-++ ..+..|+.|.|.||-.|
T Consensus 6 g~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 6 GEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp TEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC
T ss_pred CEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEeeccc
Confidence 445677 88999999988873 3 257778766443 57999999999887654
No 15
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=51.61 E-value=8 Score=25.78 Aligned_cols=52 Identities=19% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCccEEeccC-ChHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEEeCCCCC
Q 033289 66 CDEIYVVGEG-ETLHTISDKCGD-P--FIVERNPHIHDP-----DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 66 ~~~~Y~Vk~G-DTL~~IA~~~g~-~--~il~~n~~I~~P-----~~I~PGqviri~~~~~~ 117 (122)
.++.+.+.+| -||.++-...+. + ..++-|-.+-++ ..|..|+.|.|.|+-.|
T Consensus 26 NGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~V~G 86 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGG 86 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC
T ss_pred CCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEccccc
Confidence 4666888888 999999999873 2 267888777444 46999999999887543
No 16
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=51.52 E-value=5.7 Score=24.34 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=38.2
Q ss_pred CccEEeccCChHHHHHHHhCCh---hhhhhCCCCCCC-----CCcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGDP---FIVERNPHIHDP-----DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~P-----~~I~PGqviri~~~~~~ 117 (122)
++.+.+.+|-|+.++-...+.+ ..++-|-.+-.+ ..+..|+.|.|.||-.|
T Consensus 7 g~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 7 DQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp SCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEESCCC
T ss_pred CEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEeeccc
Confidence 4457778899999998888732 257788766443 57999999999887654
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=46.86 E-value=11 Score=24.00 Aligned_cols=49 Identities=20% Similarity=0.230 Sum_probs=38.3
Q ss_pred CccEEeccCChHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEEeCCCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD-P--FIVERNPHIHDP-----DDVFPGLVIKIISPST 116 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~-~--~il~~n~~I~~P-----~~I~PGqviri~~~~~ 116 (122)
++.+.+ +|-||.++-...|. + ..++-|..|-.+ ..+..|+.|-|.++-.
T Consensus 7 G~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~Vg 63 (73)
T 2kl0_A 7 GEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQ 63 (73)
T ss_dssp TEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCC
T ss_pred CEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEcccc
Confidence 455778 89999999999983 3 267888888444 4799999999988754
No 18
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=43.22 E-value=13 Score=30.53 Aligned_cols=36 Identities=11% Similarity=-0.066 Sum_probs=25.9
Q ss_pred CCccEEeccCChHHHHHHHhCChhhhhhCCCCCCCCCc
Q 033289 66 CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDV 103 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~~il~~n~~I~~P~~I 103 (122)
.+..|.|.+||||.+.+.+.|. .++...++. .|.-+
T Consensus 21 dg~~~~~~~g~ti~~a~~~~g~-~~~~~~~~~-~p~g~ 56 (493)
T 1y56_A 21 EGKELEAYEGEKLPVALLANEI-YWLTTSNEG-RKRGA 56 (493)
T ss_dssp TTEEEEEETTCBHHHHHHHTTC-CCCEECTTS-CEECS
T ss_pred CCEEEEecCCCHHHHHHHHCCC-ceecCCCCC-CCCcc
Confidence 4666999999999999999987 334445555 44433
No 19
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=42.45 E-value=6.8 Score=24.81 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=38.6
Q ss_pred CCccEEeccCChHHHHHHHhCCh---hhhhhCCCCCC-CCCcCCCcEEEEeCCCCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGDP---FIVERNPHIHD-PDDVFPGLVIKIISPSTP 117 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~~---~il~~n~~I~~-P~~I~PGqviri~~~~~~ 117 (122)
.++.+.+.+|-|+.++-...+.+ ..++-|-.+-+ -..|.+|+.|-|.||-.|
T Consensus 21 n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~ppv~G 76 (77)
T 1rws_A 21 IEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIPVVSG 76 (77)
T ss_dssp CCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCSCCCCC
T ss_pred CCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEEccccc
Confidence 35557778899999998887732 25777765533 378999999999888654
No 20
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=39.08 E-value=20 Score=23.82 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=18.5
Q ss_pred CCccEEeccCChHHHHHHHhCC
Q 033289 66 CDEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
.+..+.|.+|+||.+.|.+.|.
T Consensus 15 ~~~~v~~~~g~tlL~aa~~~Gi 36 (113)
T 3ah7_A 15 EGLTVEVKPGTNILELAHDHHI 36 (113)
T ss_dssp TCEEEECCTTCBHHHHHHHTTC
T ss_pred CCeEEEECCCCcHHHHHHHcCC
Confidence 3456899999999999999773
No 21
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=36.99 E-value=28 Score=22.35 Aligned_cols=51 Identities=14% Similarity=0.054 Sum_probs=39.7
Q ss_pred CccEEec--cCChHHHHHHHhC-C-hh--hhhhCCCCCCC-----CCcCCCcEEEEeCCCCC
Q 033289 67 DEIYVVG--EGETLHTISDKCG-D-PF--IVERNPHIHDP-----DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 67 ~~~Y~Vk--~GDTL~~IA~~~g-~-~~--il~~n~~I~~P-----~~I~PGqviri~~~~~~ 117 (122)
++.+.+. .|-||.++-...| + +. .++-|..|-.+ ..+..|+.|-|.++-.|
T Consensus 7 Ge~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgG 68 (78)
T 2k5p_A 7 GKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGG 68 (78)
T ss_dssp TEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCC
T ss_pred CEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecC
Confidence 4567888 8999999999998 3 32 67888877555 47999999999777543
No 22
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=36.86 E-value=22 Score=22.54 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.5
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi 32 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGY 32 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 45889999999999999874
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=35.94 E-value=6.7 Score=27.18 Aligned_cols=12 Identities=25% Similarity=0.340 Sum_probs=10.1
Q ss_pred CccEEeccCChH
Q 033289 67 DEIYVVGEGETL 78 (122)
Q Consensus 67 ~~~Y~Vk~GDTL 78 (122)
+...+|++|||+
T Consensus 59 P~~i~V~~GdtV 70 (132)
T 3c75_A 59 TPEVTIKAGETV 70 (132)
T ss_dssp SSEEEECTTCEE
T ss_pred CCEEEECCCCEE
Confidence 456899999997
No 24
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=34.41 E-value=24 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=18.0
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..+.|.+|+||.+.+.+.|.
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi 35 (98)
T 1frd_A 15 DTTIEIDEETTILDGAEENGI 35 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTC
T ss_pred CEEEEeCCCCcHHHHHHHcCC
Confidence 346889999999999999884
No 25
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=33.84 E-value=27 Score=23.12 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=18.0
Q ss_pred CCccEEeccCChHHHHHHHhC
Q 033289 66 CDEIYVVGEGETLHTISDKCG 86 (122)
Q Consensus 66 ~~~~Y~Vk~GDTL~~IA~~~g 86 (122)
.+..+.|.+|+||.+.+.+.|
T Consensus 15 ~~~~~~~~~g~tlL~a~~~~g 35 (111)
T 1i7h_A 15 DGAVLEANSGETILDAALRNG 35 (111)
T ss_dssp TCEEEECCTTCBHHHHHHHTT
T ss_pred CCeEEEeCCCCcHHHHHHHcC
Confidence 345688999999999999976
No 26
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=32.99 E-value=26 Score=22.99 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=17.0
Q ss_pred cEEeccCChHHHHHHHhCC
Q 033289 69 IYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~ 87 (122)
.+.+.+|+||.+.|.++|.
T Consensus 20 ~v~~~~g~tLL~aa~~~gi 38 (108)
T 2bt6_A 20 TTKGKIGDSLLDVVVQNNL 38 (108)
T ss_dssp EEEEETTCBHHHHHHHTTC
T ss_pred EEEECCCChHHHHHHHcCC
Confidence 5788999999999999874
No 27
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=31.93 E-value=29 Score=22.30 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=17.9
Q ss_pred CccEEeccCChHHHHHHHhCC
Q 033289 67 DEIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 67 ~~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
+..+.|.+|+||.+.+++.|.
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi 36 (98)
T 1jq4_A 16 SLRFECRSDEDVITAALRQNI 36 (98)
T ss_dssp EEEEEEESCCTHHHHHHHHTC
T ss_pred cEEEEeCCCChHHHHHHHcCC
Confidence 446889999999999999874
No 28
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=31.29 E-value=25 Score=22.91 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.0
Q ss_pred ccEEeccCChHHHHHHHhCCh
Q 033289 68 EIYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
..+.|.+|+||.+.|.+.|.+
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 468899999999999998743
No 29
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=31.18 E-value=29 Score=22.60 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=18.0
Q ss_pred ccEEeccCChHHHHHHHhCCh
Q 033289 68 EIYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
..+.|.+|+||.+.|.+.|.+
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 468899999999999998844
No 30
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=30.28 E-value=33 Score=22.23 Aligned_cols=20 Identities=10% Similarity=0.141 Sum_probs=17.3
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi 35 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNI 35 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTC
T ss_pred EEEEECCCCHHHHHHHHcCC
Confidence 46889999999999999773
No 31
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=30.09 E-value=30 Score=26.25 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=13.0
Q ss_pred CCccccccCCccCCCCCCCccEEe
Q 033289 49 DYDHVMRPGNQLLNRRPCDEIYVV 72 (122)
Q Consensus 49 ~~~v~~~~g~~~~~~~~~~~~Y~V 72 (122)
+.||.|..|+.+.. ..++|++
T Consensus 24 ~~pVlD~~G~~l~~---G~~YyI~ 44 (200)
T 2qn4_A 24 PPPVYDTEGHELSA---DGSYYVL 44 (200)
T ss_dssp CCBCBCTTSCBCBT---TSCEEEE
T ss_pred CCceEeCCCCCCcC---CCcEEEE
Confidence 35777787777643 4455554
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=30.07 E-value=61 Score=19.87 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=32.7
Q ss_pred ccEEeccCChHHHHHHHhC-Ch--------hhhhhCCCC-CCC-CCcCCCcEEEEeCCCCC
Q 033289 68 EIYVVGEGETLHTISDKCG-DP--------FIVERNPHI-HDP-DDVFPGLVIKIISPSTP 117 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g-~~--------~il~~n~~I-~~P-~~I~PGqviri~~~~~~ 117 (122)
+...+ +|-|+.++-...+ .+ ..++-|-.+ .++ ..+.+|+.|-|.||-.|
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEECCBCC
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEECCCCC
Confidence 34666 7888887755542 12 245666554 555 56899999999998654
No 33
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=28.96 E-value=33 Score=22.56 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=16.1
Q ss_pred EEeccCChHHHHHHHhCC
Q 033289 70 YVVGEGETLHTISDKCGD 87 (122)
Q Consensus 70 Y~Vk~GDTL~~IA~~~g~ 87 (122)
..|.+|+||.+.|.++|.
T Consensus 20 ~~~~~g~tlL~aa~~~gi 37 (109)
T 2y5c_A 20 VSGRVGDNVLHLAQRHGV 37 (109)
T ss_dssp EEEETTCBHHHHHHHTTC
T ss_pred EEECCCCcHHHHHHHcCC
Confidence 778999999999999773
No 34
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=28.25 E-value=37 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.9
Q ss_pred ccEEeccCChHHHHHHHhC
Q 033289 68 EIYVVGEGETLHTISDKCG 86 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g 86 (122)
..+.|.+|+||.+.+.+.|
T Consensus 13 ~~~~~~~g~tlL~a~~~~g 31 (93)
T 1wri_A 13 ITFDVEPGERLIDIGSEKA 31 (93)
T ss_dssp EEEEECTTSCHHHHHHHHS
T ss_pred EEEEECCCCcHHHHHHHCc
Confidence 4578999999999999987
No 35
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=28.00 E-value=34 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.3
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi 31 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGL 31 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTC
T ss_pred EEEEECCCCcHHHHHHHcCC
Confidence 45889999999999999874
No 36
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=26.84 E-value=39 Score=21.78 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.4
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi 33 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNV 33 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 45889999999999999874
No 37
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=26.47 E-value=40 Score=21.68 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=17.4
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi 33 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGI 33 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 45889999999999999874
No 38
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=25.94 E-value=41 Score=21.59 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.5
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
..+.|.+|+||.+.+.+.|.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi 35 (98)
T 1czp_A 16 HEIEVPDDEYILDAAEEQGY 35 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCCHHHHHHHcCC
Confidence 46889999999999999874
No 39
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=24.13 E-value=16 Score=26.86 Aligned_cols=10 Identities=0% Similarity=-0.383 Sum_probs=0.0
Q ss_pred HHHHHhhcCC
Q 033289 31 ALILIGSIRG 40 (122)
Q Consensus 31 allll~s~~~ 40 (122)
+++++++|.+
T Consensus 18 ~~~~lagC~~ 27 (351)
T 4edp_A 18 LGTSLVGCGK 27 (351)
T ss_dssp ----------
T ss_pred HHHHhheeCC
Confidence 3335677743
No 40
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=24.10 E-value=70 Score=25.83 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=31.8
Q ss_pred CCccEEecc-CChHHHHHHHhCC--h----h--hhh--------------hCCCCCCCCCcCCCcEEEEeCCC
Q 033289 66 CDEIYVVGE-GETLHTISDKCGD--P----F--IVE--------------RNPHIHDPDDVFPGLVIKIISPS 115 (122)
Q Consensus 66 ~~~~Y~Vk~-GDTL~~IA~~~g~--~----~--il~--------------~n~~I~~P~~I~PGqviri~~~~ 115 (122)
.++.|.+.. +.||.+.=.+.|. + . .+. .+.....-..++|||+|.| |+.
T Consensus 161 ~PG~y~l~~~~~tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~V-p~~ 232 (359)
T 2j58_A 161 NSGKQAITNIPLTVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFI-PSN 232 (359)
T ss_dssp SCEEEECCSSCCBHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEE-CBG
T ss_pred CCeEEEeCCCCCcHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEE-eec
Confidence 478899999 9999987777652 1 1 121 2222222256899999999 544
No 41
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=23.47 E-value=21 Score=19.27 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=6.3
Q ss_pred CCcCCCcE
Q 033289 101 DDVFPGLV 108 (122)
Q Consensus 101 ~~I~PGqv 108 (122)
.-|||||-
T Consensus 4 sciypgqy 11 (26)
T 3u7d_B 4 SCIFPGQY 11 (26)
T ss_pred cccccCcc
Confidence 45899995
No 42
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.08 E-value=50 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.031 Sum_probs=17.0
Q ss_pred cEEeccCChHHHHHHHhCCh
Q 033289 69 IYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
.+.|.+|+||.+.+.+.|.+
T Consensus 14 ~~~~~~g~tll~a~~~~gi~ 33 (104)
T 3lxf_A 14 EIQAEPGLSLMEALRDAGID 33 (104)
T ss_dssp EEECCTTSBHHHHHHHTTCT
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 47889999999999998743
No 43
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=22.95 E-value=40 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.0
Q ss_pred EeccCChHHHHHHHhCC
Q 033289 71 VVGEGETLHTISDKCGD 87 (122)
Q Consensus 71 ~Vk~GDTL~~IA~~~g~ 87 (122)
.++++|||-..|.+.|.
T Consensus 91 ~~~kadTleeLA~~~gi 107 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGI 107 (160)
T ss_dssp CSEECSSHHHHHHHHTC
T ss_pred ceEecCCHHHHHHHhCC
Confidence 46789999999999994
No 44
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=22.79 E-value=35 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.2
Q ss_pred cEEeccCChHHHHHHHhCCh
Q 033289 69 IYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
.+.|.+|+||.+.+++.|.+
T Consensus 13 ~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 13 QLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEECCTTEEHHHHHHTTTSS
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 57889999999999998743
No 45
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=22.60 E-value=29 Score=22.57 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=17.9
Q ss_pred ccEEeccCChHHHHHHHhCCh
Q 033289 68 EIYVVGEGETLHTISDKCGDP 88 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~~ 88 (122)
..+.|.+|+||.+.|.+.|.+
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (105)
T 1b9r_A 13 YAVDAQDGQSLMEVATQNGVP 33 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHcCCC
Confidence 458899999999999998743
No 46
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=20.18 E-value=61 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.3
Q ss_pred cEEeccCChHHHHHHHhCC
Q 033289 69 IYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 69 ~Y~Vk~GDTL~~IA~~~g~ 87 (122)
.+.|.+|+||.+.+++.|.
T Consensus 39 ~v~v~~g~tlL~aa~~~Gi 57 (128)
T 1doi_A 39 SLEVNEGEYILEAAEAQGY 57 (128)
T ss_dssp EEECCTTSCHHHHHHHTTC
T ss_pred EEEECCCCcHHHHHHHcCC
Confidence 6899999999999999874
No 47
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=20.10 E-value=56 Score=22.64 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=17.3
Q ss_pred ccEEeccCChHHHHHHHhCC
Q 033289 68 EIYVVGEGETLHTISDKCGD 87 (122)
Q Consensus 68 ~~Y~Vk~GDTL~~IA~~~g~ 87 (122)
....|.+|+||.+.+.+.|.
T Consensus 34 ~~v~~~~G~tLL~aa~~~gi 53 (126)
T 3hui_A 34 RTVEVEEGATVMEAAIRNAI 53 (126)
T ss_dssp EEEEEETTSBHHHHHHTTTC
T ss_pred EEEEECCCCcHHHHHHHcCC
Confidence 46788999999999999874
Done!