BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033290
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN
           Anaphase-Promoting Complex
          Length = 171

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 63/77 (81%), Gaps = 2/77 (2%)

Query: 22  ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
           ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct: 86  ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 143

Query: 82  HLNGRDTHVRQIKIYGP 98
           H NGRDTH+RQIKIY P
Sbjct: 144 HQNGRDTHMRQIKIYTP 160


>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
 pdb|1GQP|B Chain B, Apc10DOC1 SUBUNIT OF S. CEREVISIAE
          Length = 221

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%)

Query: 22  ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
           ESY PS + V AG    + +  K +E+    GWV +    N   D  +    ++++   N
Sbjct: 117 ESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVN 176

Query: 82  HLNGRDTHVRQIKIYGPRPNP 102
           H NG+DTH+R I++Y P   P
Sbjct: 177 HENGKDTHLRGIRLYVPSNEP 197


>pdb|1JR2|A Chain A, Structure Of Uroporphyrinogen Iii Synthase
 pdb|1JR2|B Chain B, Structure Of Uroporphyrinogen Iii Synthase
          Length = 286

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 85  GRDTHVRQIKIYGPRPNPIPHQQFQFTS 112
           G+D ++R++ +YG     IP   F+F S
Sbjct: 36  GQDPYIRELGLYGLEATLIPVLSFEFLS 63


>pdb|3O4Z|A Chain A, Tel2 Structure And Function In The Hsp90-Dependent
          Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|B Chain B, Tel2 Structure And Function In The Hsp90-Dependent
          Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|C Chain C, Tel2 Structure And Function In The Hsp90-Dependent
          Maturation Of Mtor And Atr Complexes
 pdb|3O4Z|D Chain D, Tel2 Structure And Function In The Hsp90-Dependent
          Maturation Of Mtor And Atr Complexes
          Length = 647

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 71 TFMLQIVVLSNHLNGRDTHVRQIKIY 96
          TF+ QIV  S  ++GRD  +++I+IY
Sbjct: 66 TFLCQIVTFSRTISGRDG-LQEIRIY 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,198,024
Number of Sequences: 62578
Number of extensions: 118526
Number of successful extensions: 246
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)