BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033290
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZPW2|APC10_ARATH Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana
GN=At2g18290 PE=1 SV=2
Length = 192
Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 99/114 (86%), Positives = 109/114 (95%)
Query: 9 LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TF
Sbjct: 79 LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETF 138
Query: 69 VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
VNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct: 139 VNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192
>sp|Q8K2H6|APC10_MOUSE Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10
PE=2 SV=1
Length = 185
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 8 VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
+K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N + T
Sbjct: 73 TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132
Query: 68 FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
TFM+QI VL+NH NGRDTH+RQIKIY P + + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185
>sp|Q9UM13|APC10_HUMAN Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10
PE=1 SV=1
Length = 185
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 8 VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
+K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N + T
Sbjct: 73 TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132
Query: 68 FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
TFM+QI VL+NH NGRDTH+RQIKIY P + + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185
>sp|Q2YDH1|APC10_BOVIN Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2
SV=1
Length = 185
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 8 VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
+K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N + T
Sbjct: 73 TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132
Query: 68 FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
TFM+QI VL+NH NGRDTH+RQIKIY P + + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185
>sp|Q9V831|APC10_DROME Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster
GN=Apc10 PE=2 SV=2
Length = 195
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 4/113 (3%)
Query: 12 VVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNT 71
+ +Y D+KLDESYTPS+IS+R+G F++L+E++ ++L +PTGWV I + + + + T
Sbjct: 85 IYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRT 142
Query: 72 FMLQIVVLSNHLNGRDTHVRQIKIYGP-RPNPIPHQQF-QFTSSEFITYSTVR 122
FMLQI V+SNH NGRDTH+RQI+I+ P P + F +F + +F ++T+R
Sbjct: 143 FMLQIAVISNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR 195
>sp|Q55ER5|APC10_DICDI Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum
GN=anapc10 PE=3 SV=1
Length = 188
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 7/120 (5%)
Query: 4 CFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGND 63
C++ L +++ D+KLDESYTP KIS++AG H+L+EI EL +P+GW+ I LS N
Sbjct: 75 CYIENL---LIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFN- 130
Query: 64 PRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQF-QFTSSEFITYSTVR 122
+ + +LQI +LSN NGRD+H+RQIK+YG + + + Q+ +F S E + T+R
Sbjct: 131 --NNSLKANLLQISILSNLKNGRDSHIRQIKVYGKKISIENYTQYPKFNSPEVSMFQTLR 188
>sp|O42971|APC10_SCHPO Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=apc10 PE=1 SV=1
Length = 189
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 3/116 (2%)
Query: 9 LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
+K V +Y+ + LDESYTPS + + AG GF +L+ + TV++ +PTGWV++ + G+ R+
Sbjct: 75 IKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPV-GDFGRNGL 133
Query: 69 VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPN--PIPHQQFQFTSSEFITYSTVR 122
++ ++QI +L+NH +G+D+HVR IKIY P I + +TS +FI+ + +R
Sbjct: 134 LDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPAIAVDEIPYTSLQFISRNQLR 189
>sp|P53068|APC10_YEAST Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DOC1 PE=1 SV=2
Length = 250
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 9 LKLVVLYVDFKL--DESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRD 66
+ + V+ + F + DESY PS + V AG + + K +E+ GWV + N D
Sbjct: 131 MDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDD 190
Query: 67 TFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP 102
+ ++++ NH NG+DTH+R I++Y P P
Sbjct: 191 QLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 226
>sp|Q8IWT3|CUL9_HUMAN Cullin-9 OS=Homo sapiens GN=CUL9 PE=1 SV=2
Length = 2517
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 21 DESYTPSKISVRAGDGFHNL-KEIKTVELVKPTGWVYISLSGNDPRDTFVNTF--MLQIV 77
D SY P+++ V GD + E+ TV V P+ I L +N F ++QI
Sbjct: 1226 DSSYMPARVVVFGGDSTSCIGTELNTVN-VMPSASRVILLEN-------LNRFWPIIQIR 1277
Query: 78 VLSNHLNGRDTHVRQIKIYGPRPNPIP 104
+ G DT VR +++ GP+P P
Sbjct: 1278 IKRCQQGGIDTRVRGVEVLGPKPTFWP 1304
>sp|Q14999|CUL7_HUMAN Cullin-7 OS=Homo sapiens GN=CUL7 PE=1 SV=2
Length = 1698
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 21 DESYTPSKISVRAGDGFHNL-KEIKTVELVKPTGWVYISLSGNDPRDTFVNTF--MLQIV 77
D SY P+++ V GD +L E+ +V V P+ I L + F ++QI
Sbjct: 897 DSSYMPARVVVCGGDSTSSLHTELNSVN-VMPSASRVILLEN-------LTRFWPIIQIR 948
Query: 78 VLSNHLNGRDTHVRQIKIYGPRPN--PIPHQQF 108
+ G DT +R ++I GP+P P+ +Q
Sbjct: 949 IKRCQQGGIDTRIRGLEILGPKPTFWPVFREQL 981
>sp|P31783|CD8A_BOVIN T-cell surface glycoprotein CD8 alpha chain OS=Bos taurus GN=CD8A
PE=2 SV=1
Length = 242
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 25 TPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLN 84
+P++ R G+ E+ + W+ + G+DPR TF+ Q V L+ L+
Sbjct: 31 SPTQKETRLGEKVELQCELLQSGMATGCSWLR-HIPGDDPRPTFLMYLSAQRVKLAEGLD 89
Query: 85 GRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFI 116
R H+ K+ G +FQ T S F+
Sbjct: 90 PR--HISGAKVSG--------TKFQLTLSSFL 111
>sp|Q80TT8|CUL9_MOUSE Cullin-9 OS=Mus musculus GN=Cul9 PE=2 SV=2
Length = 1865
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 21 DESYTPSKISVRAGDGFHNLK-EIKTVELVKPTGWVYI--SLSGNDPRDTFVNTFMLQIV 77
D SY P+++ V GD + E+ TV ++ V + +L+ P ++QI
Sbjct: 563 DSSYMPARVVVFGGDNVGCISTELNTVNVMPSASRVTLLENLTRFWP--------IIQIR 614
Query: 78 VLSNHLNGRDTHVRQIKIYGPRPNPIP 104
+ G DT VR +++ GP+P P
Sbjct: 615 IKRCQQGGIDTRVRGVEVLGPKPTFWP 641
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster
GN=HERC2 PE=1 SV=3
Length = 4912
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 21 DESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLS 80
D S+ PS + +R GD +LKE + + P G + L P T+ +++VV
Sbjct: 2863 DHSHMPSLLEIRVGDCVDSLKEYTWIPV--PAGASRVLLMQQVP--TYYP--WVEVVVKQ 2916
Query: 81 NHLNGRDTHVRQIKIYGPRPNP-IPH--QQFQFTSSEF 115
NG + IK G R P + H QF +SE+
Sbjct: 2917 CQNNGIQCKIHGIKFVGRRQQPDLQHILANAQFLASEY 2954
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 21 DESYTPSKISVRAGDGFHNLKEIKTVEL 48
D SY PS + V G+ +NL E+KT+ +
Sbjct: 2842 DSSYMPSLVVVSGGNSLNNLIELKTINI 2869
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 21 DESYTPSKISVRAGDGFHNLKEIKTVEL 48
D SY PS + V G+ +NL E+KT+ +
Sbjct: 2841 DSSYMPSLVVVSGGNSLNNLIELKTINI 2868
>sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Homo
sapiens GN=ZZEF1 PE=1 SV=6
Length = 2961
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 21 DESYTPSKISVRAGDGFHNLKEIKTVEL-VKPTGWVYISLSGNDPRDTFVNTFMLQIVVL 79
D+SY P +++V G +L+E++ V + TG+V + + N V+ +QI +
Sbjct: 309 DQSYMPQQVTVAVGRNASDLQEVRDVHIPSNVTGYVTLLENAN------VSQLYVQINIK 362
Query: 80 SNHLNGRDTHVRQIKIYG 97
+G DT + ++ G
Sbjct: 363 RCLSDGCDTRIHGLRAVG 380
>sp|Q5SSH7|ZZEF1_MOUSE Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Mus
musculus GN=Zzef1 PE=1 SV=2
Length = 2924
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 21 DESYTPSKISVRAGDGFHNLKEIKTVEL-VKPTGWVYISLSGNDPRDTFVNTFMLQIVVL 79
D+SY P +++V G +L+E++ V + TG+V + + N ++ +QI +
Sbjct: 309 DQSYMPQQVTVAVGRSASDLQEVRDVHIPSNVTGYVTLLENAN------ISQLYVQINIK 362
Query: 80 SNHLNGRDTHVRQIKIYG 97
+G DT + ++ G
Sbjct: 363 RCLSDGCDTRIHGLRAVG 380
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,292,983
Number of Sequences: 539616
Number of extensions: 1762872
Number of successful extensions: 3227
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3209
Number of HSP's gapped (non-prelim): 19
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)