Query 033290
Match_columns 122
No_of_seqs 105 out of 219
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03256 APC10: Anaphase-promo 100.0 2.2E-42 4.7E-47 267.6 9.7 114 6-121 77-193 (193)
2 KOG3437 Anaphase-promoting com 100.0 7E-41 1.5E-45 256.2 12.2 115 6-122 68-184 (184)
3 cd08366 APC10 APC10 subunit of 100.0 1.5E-39 3.2E-44 240.8 11.1 91 6-97 49-139 (139)
4 cd08159 APC10-like APC10-like 100.0 1.7E-38 3.8E-43 233.0 9.8 84 6-96 46-129 (129)
5 cd08667 APC10-ZZEF1 APC10/DOC1 100.0 3.1E-38 6.8E-43 232.2 10.1 84 7-97 47-131 (131)
6 cd08365 APC10-like1 APC10-like 100.0 6.2E-36 1.3E-40 220.0 9.2 83 7-96 48-131 (131)
7 cd08665 APC10-CUL7 APC10-like 100.0 3.6E-35 7.8E-40 216.0 8.5 84 7-97 47-131 (131)
8 COG5156 DOC1 Anaphase-promotin 100.0 7.1E-35 1.5E-39 221.0 10.3 97 6-103 72-168 (189)
9 cd08666 APC10-HECTD3 APC10-lik 100.0 4.9E-33 1.1E-37 205.3 9.7 81 7-95 52-133 (134)
10 cd08664 APC10-HERC2 APC10-like 100.0 2.5E-30 5.3E-35 194.3 9.1 83 7-96 70-152 (152)
11 PF07738 Sad1_UNC: Sad1 / UNC- 96.5 0.049 1.1E-06 39.0 9.9 88 7-98 42-134 (135)
12 PF06201 PITH: PITH domain; I 95.8 0.048 1E-06 40.8 7.2 85 7-97 57-150 (152)
13 PF00754 F5_F8_type_C: F5/8 ty 93.8 1.3 2.8E-05 29.5 9.6 77 6-89 47-125 (129)
14 KOG1428 Inhibitor of type V ad 90.3 0.82 1.8E-05 46.1 6.5 80 10-101 2936-3016(3738)
15 cd00057 FA58C Substituted upda 89.8 5 0.00011 27.7 10.2 63 25-97 74-143 (143)
16 PRK10154 hypothetical protein; 73.2 7.8 0.00017 28.9 4.4 64 27-98 67-133 (134)
17 PF00688 TGFb_propeptide: TGF- 41.7 65 0.0014 24.0 4.8 88 9-99 122-220 (238)
18 PF08475 Baculo_VP91_N: Viral 33.3 77 0.0017 24.8 4.1 64 16-86 88-153 (183)
19 PF05506 DUF756: Domain of unk 32.3 1.5E+02 0.0032 19.5 6.1 35 22-61 44-78 (89)
20 PF13473 Cupredoxin_1: Cupredo 30.5 20 0.00043 24.2 0.4 16 20-35 28-43 (104)
21 PF07738 Sad1_UNC: Sad1 / UNC- 29.1 1.7E+02 0.0037 20.5 5.1 48 48-103 27-76 (135)
22 PF10807 DUF2541: Protein of u 20.8 2.7E+02 0.0058 20.8 4.8 50 40-97 83-132 (134)
23 PF10644 Misat_Tub_SegII: Misa 20.4 72 0.0016 22.4 1.7 27 19-45 51-77 (115)
No 1
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=100.00 E-value=2.2e-42 Score=267.65 Aligned_cols=114 Identities=54% Similarity=0.929 Sum_probs=81.4
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
-+.|+.|+|||||++||||||++|+|++|++++||+++++++|++|.||+.|++. +..+++++|++|||+|++|||||
T Consensus 77 ~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~--~~~~~~~r~~~iqI~I~~nhq~G 154 (193)
T PF03256_consen 77 RVIISSLSIYVDYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPNGWVHIPLL--DNRGNPLRCFFIQIAILSNHQNG 154 (193)
T ss_dssp EEEE-EEEEEEEHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-EEEEEEE-B--STTTSBEEEEEEEEEEEEECCC-
T ss_pred CcEEEEEEEEEccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCCccEEEEeC--CCCCCcEEEEEEEEEEEecccCC
Confidence 4789999999999999999999999999999999999999999999999999998 44558999999999999999999
Q ss_pred CCceeecEEEEccCCCCC--CCCCc-ccCchhhhccccc
Q 033290 86 RDTHVRQIKIYGPRPNPI--PHQQF-QFTSSEFITYSTV 121 (122)
Q Consensus 86 rDTHIR~ikI~gp~~~~~--~~~~~-~f~s~e~~~f~~i 121 (122)
||||||||||+||++... ....+ .|+|++|.||++|
T Consensus 155 ~DthiR~iki~gp~~~~~~~~~~~~~~~~s~~~~~~~~~ 193 (193)
T PF03256_consen 155 KDTHIRGIKIYGPRPSESSSANDDFHGFSSVEFAMFSTI 193 (193)
T ss_dssp SS-EESEEEEEEE--------------------------
T ss_pred CCCceeeEEEECCCCccccccccccCCCchHHhEecccC
Confidence 999999999999998733 23334 6999999999986
No 2
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-41 Score=256.17 Aligned_cols=115 Identities=47% Similarity=0.815 Sum_probs=104.3
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
-+.|+.|+||+||++||||||++|+|++|++++||+++..++|.+|+|||.+++.+ .+++|++||+|||+|++|||||
T Consensus 68 ~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~~dl~~~~~~el~ep~GWv~lp~~d--~~~~~lr~~~iqi~i~~NHq~G 145 (184)
T KOG3437|consen 68 RVDIQYVVIFLDFKQDESYTPSKIKIRAGNGFNDLWEIQSVELVEPKGWVHLPVLD--NDDKPLRCFMIQIAILSNHQNG 145 (184)
T ss_pred EEEEEEEEEEEEEecccccCceeEEEEecCChhheeeeeEEEEecCCceEEEeecc--CCCCceEEEEEEEEeecccccC
Confidence 47899999999999999999999999999999999999999999999999999994 4778999999999999999999
Q ss_pred CCceeecEEEEccCCCCCC--CCCcccCchhhhcccccC
Q 033290 86 RDTHVRQIKIYGPRPNPIP--HQQFQFTSSEFITYSTVR 122 (122)
Q Consensus 86 rDTHIR~ikI~gp~~~~~~--~~~~~f~s~e~~~f~~iR 122 (122)
||||+||||||+|.-..+. ..-+++++..|.++.+||
T Consensus 146 kDthvR~iri~~p~~e~~~~~~e~~p~~~i~~~~~~~ir 184 (184)
T KOG3437|consen 146 KDTHVRHIRIYAPSIEGPYYKIEWFPLTTIDFVFQNAIR 184 (184)
T ss_pred ccceeEEEEEecccccCccceehcccCCcHHHHHHhhhC
Confidence 9999999999999643332 123469999999999887
No 3
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=100.00 E-value=1.5e-39 Score=240.81 Aligned_cols=91 Identities=59% Similarity=0.958 Sum_probs=86.3
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
-+.|+.|+||+||++||||||++|+|++|++++||+|++++++++|.||+.|++++.+ ++++++|++|||+|++|||||
T Consensus 49 ~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~~dl~e~~~v~l~~p~Gwv~i~l~~~~-~~~~~~~~~iqi~I~~nh~nG 127 (139)
T cd08366 49 KTDISAVALYLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGWVHIPLEDNR-DGKPLRTFFLQIAILSNHQNG 127 (139)
T ss_pred CcEEEEEEEEEccCCCCCCCCEEEEEEEECCcCchhheEEEEcCCCCEEEEEEccCCC-CCCeeEEEEEEEEEecccCCC
Confidence 3679999999999999999999999999999999999999999999999999999654 468999999999999999999
Q ss_pred CCceeecEEEEc
Q 033290 86 RDTHVRQIKIYG 97 (122)
Q Consensus 86 rDTHIR~ikI~g 97 (122)
||||||||||||
T Consensus 128 ~DthiR~iki~g 139 (139)
T cd08366 128 RDTHIRQIKVYG 139 (139)
T ss_pred CCcceeeeEecC
Confidence 999999999997
No 4
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=100.00 E-value=1.7e-38 Score=232.96 Aligned_cols=84 Identities=25% Similarity=0.508 Sum_probs=79.8
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
-+.|++|+||+|| +||||||++|+|++|++++||+|++++++++|.||+.|..+ .+++|++|||+|++|||||
T Consensus 46 ~v~i~~l~i~~~~-~DeSYtP~~I~V~~G~~~~dL~e~~~v~l~~p~Gwv~i~~~------~~~~~~~iqI~I~~nhqnG 118 (129)
T cd08159 46 DVLIRVLAIFVDM-ADSSYMPSLVVVYGGHSPSDLRELKDVNIRPSNGWVALLED------DTLKCPYIEIRIKRCRSDG 118 (129)
T ss_pred CcEEEEEEEEecC-CCCCcCCcEEEEEecCCHHHhheeEEEEecCCCceEEEEcC------CcEEEEEEEEEEHHhccCC
Confidence 3679999999999 99999999999999999999999999999999999999655 3799999999999999999
Q ss_pred CCceeecEEEE
Q 033290 86 RDTHVRQIKIY 96 (122)
Q Consensus 86 rDTHIR~ikI~ 96 (122)
|||||||||||
T Consensus 119 ~DthiRgikI~ 129 (129)
T cd08159 119 IDTRIRGLRLL 129 (129)
T ss_pred ccceeeEEEeC
Confidence 99999999996
No 5
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=100.00 E-value=3.1e-38 Score=232.19 Aligned_cols=84 Identities=27% Similarity=0.486 Sum_probs=79.7
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEe-cCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELV-KPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~-~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
+.|++|+||+| ++||||||++|+|+||++++||+|+++++++ +|.||+.|..+ .++++++|||+|++|||||
T Consensus 47 v~i~~l~i~v~-~~DeSYtPs~I~I~~G~~~~dL~e~~~v~l~~~~~Gwv~l~~~------~~~~~~~iqI~I~~nhqnG 119 (131)
T cd08667 47 VVLRHLSIAVA-ATDQSYMPQQVTVSVGRSASSLQEVRDVHIPSNVTGYVTLLEN------ANISYLVVQINIKRCHSDG 119 (131)
T ss_pred eEEEEEEEEEc-CCCCCcCCcEEEEEecCCHhhheeeEEEEcCCCCceeEEEEcC------CceEEEEEEEEeHHhccCC
Confidence 68999999999 8999999999999999999999999999997 69999999654 5699999999999999999
Q ss_pred CCceeecEEEEc
Q 033290 86 RDTHVRQIKIYG 97 (122)
Q Consensus 86 rDTHIR~ikI~g 97 (122)
||||||||||+|
T Consensus 120 ~DthIRgiki~G 131 (131)
T cd08667 120 CDTRIHGLKTIG 131 (131)
T ss_pred ccceeeEEEEcC
Confidence 999999999997
No 6
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=100.00 E-value=6.2e-36 Score=220.03 Aligned_cols=83 Identities=27% Similarity=0.477 Sum_probs=77.6
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecC-ceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKP-TGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p-~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
+.|++|+||+|+ +||||||++|+|++|++++||+|++++++++| .|||.|. + +.+++++||||+|++|||||
T Consensus 48 v~i~~l~l~vd~-~DeSYtP~~I~V~~G~~~~dL~e~~~v~v~~~~~g~v~ll-~-----~~~~~~~~iqI~I~~nhqnG 120 (131)
T cd08365 48 VLVRHLSLAVDA-TDSSYMPQRVVVAGGRSASNLQELRDVNIPPSVTGYVTLL-E-----DATISQPYIEIRIKRCRSDG 120 (131)
T ss_pred cEEEEEEEEecC-CCCCCCCcEEEEEecCCHHHheeEEEEEccCCCceeEEEc-c-----CCceeeEEEEEEEHHHccCC
Confidence 679999999996 99999999999999999999999999999999 9999983 3 24689999999999999999
Q ss_pred CCceeecEEEE
Q 033290 86 RDTHVRQIKIY 96 (122)
Q Consensus 86 rDTHIR~ikI~ 96 (122)
||||||||||.
T Consensus 121 ~DthiRgikI~ 131 (131)
T cd08365 121 IDTRIHGLRIL 131 (131)
T ss_pred ccceeeEEEeC
Confidence 99999999984
No 7
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=100.00 E-value=3.6e-35 Score=216.00 Aligned_cols=84 Identities=26% Similarity=0.393 Sum_probs=76.6
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCce-EeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLK-EIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~-ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
+.|++|+||++ ++||||||++|+|++|++++||+ |++++++++|.|||.+ +++ .....++|||+|++|||||
T Consensus 47 v~I~~l~i~v~-~~DeSYtPs~I~V~~G~~~~dL~~e~~~V~~~~~~g~v~l-l~~-----~~~~~~~iqI~I~~nhqnG 119 (131)
T cd08665 47 VVIRQLYMLVA-SEDSSYMPARVVVLGGDSPSCITTELNAVNVSPTASRVVL-LEN-----MTRFWPIIQIRIKRCQQGG 119 (131)
T ss_pred cEEEEEEEEec-CCCCCcCCeeEEEEecCCHHHhhheeEEEEccCCcceEEE-ccc-----CcccceEEEEEEhhhcccC
Confidence 67999999998 89999999999999999999997 9999999999999997 552 1234479999999999999
Q ss_pred CCceeecEEEEc
Q 033290 86 RDTHVRQIKIYG 97 (122)
Q Consensus 86 rDTHIR~ikI~g 97 (122)
||||||||||+|
T Consensus 120 ~DthIRgikI~G 131 (131)
T cd08665 120 IDTRVRGLEILG 131 (131)
T ss_pred ccceeeEEEecC
Confidence 999999999997
No 8
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=220.97 Aligned_cols=97 Identities=43% Similarity=0.751 Sum_probs=92.3
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
.+.|+.++||++|.+||||||++|.|+||.+++|+.+++++++.||+|||++++.+.+.+| .++|.|||+.|.+|||||
T Consensus 72 r~~I~~v~lfls~t~DeSYtPs~i~v~aG~~~~D~r~~~~vev~ep~Gwv~l~v~d~~~d~-LL~c~~I~v~i~~NHq~G 150 (189)
T COG5156 72 RRYIQSVQLFLSFTQDESYTPSKIGVRAGLTREDVREISSVEVVEPEGWVTLSVADKREDD-LLKCIYILVVINSNHQEG 150 (189)
T ss_pred EEeeeeehhhhhhhcccccCcceeEEeccCChhhheeEEEEEEEcCCceEEEEecccCcCC-ceeEEEEEEEEecCcccC
Confidence 5789999999999999999999999999999999999999999999999999999777666 899999999999999999
Q ss_pred CCceeecEEEEccCCCCC
Q 033290 86 RDTHVRQIKIYGPRPNPI 103 (122)
Q Consensus 86 rDTHIR~ikI~gp~~~~~ 103 (122)
||||+|+||||.|...+.
T Consensus 151 KDsHvR~ikiy~ps~e~~ 168 (189)
T COG5156 151 KDSHVRHIKIYEPSTEEI 168 (189)
T ss_pred cccceeeEEEeccCCccc
Confidence 999999999999997664
No 9
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=100.00 E-value=4.9e-33 Score=205.35 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=74.9
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecC-ceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKP-TGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG 85 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p-~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG 85 (122)
+.|++|+||+|| +||||||++|+|++|+ ++||+|++++++++| .|||.| +++ ...++++|||+|++|||||
T Consensus 52 v~i~~l~i~v~~-~DeSYtP~~I~V~~G~-~~dL~ei~~V~i~~~~~g~V~i-l~~-----~~~~~~~iqI~I~~nhqnG 123 (134)
T cd08666 52 TIIKKLLLTVDA-TDDNYMPKRVAVYGGE-GDNLKKLNDVSIDETLIGDVCI-LED-----MTTHLPVIEIRIKECKDEG 123 (134)
T ss_pred cEeeEEEEEecC-CCCCcCCcEEEEEecC-ccChhheEEEEeCCCCCCeEEE-ecC-----CceEeEEEEEEeHHhccCC
Confidence 569999999999 9999999999999999 999999999999986 999999 442 3478889999999999999
Q ss_pred CCceeecEEE
Q 033290 86 RDTHVRQIKI 95 (122)
Q Consensus 86 rDTHIR~ikI 95 (122)
||||||||||
T Consensus 124 ~DthIRgiKI 133 (134)
T cd08666 124 IDVRIRGIKI 133 (134)
T ss_pred ccceeeEEEe
Confidence 9999999998
No 10
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=99.97 E-value=2.5e-30 Score=194.33 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=75.8
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR 86 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr 86 (122)
+.|++|+||+| .+||||||++|+|++|++++||+|++++++.+|.|||+|... ...+.++|||+|++||||||
T Consensus 70 v~I~~L~i~vd-~~DeSY~Ps~I~V~~G~~~~~L~el~~V~i~~~~~~v~Ll~~------~~~~~~~IqI~I~~ch~~Gi 142 (152)
T cd08664 70 VLIHSLKIIVD-PADSSYMPSLVVVSGGDSLNSLKELKTINVNATDTLVTLLQD------VKEYYRYIEIAIKQCRNNGI 142 (152)
T ss_pred cEEEEEEEEec-CCCCCcCCceEEEEecCChhhhheeEEEEcCCCCceEEeccC------CCeeeEEEEEEhHhhhhCCC
Confidence 68999999999 799999999999999999999999999999999999998532 23456799999999999999
Q ss_pred CceeecEEEE
Q 033290 87 DTHVRQIKIY 96 (122)
Q Consensus 87 DTHIR~ikI~ 96 (122)
|||||||||.
T Consensus 143 Dt~IrglkI~ 152 (152)
T cd08664 143 DCKIHGLNII 152 (152)
T ss_pred cceeeEEEeC
Confidence 9999999983
No 11
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=96.52 E-value=0.049 Score=38.99 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=52.9
Q ss_pred eeeeeeeeeeecCCC--CCCCcceEEEEeCCCcCC--ceEeeEEEE-ecCceeEEEEccCCCCCCCeEEEEEEEEEeecc
Q 033290 7 FVLKLVVLYVDFKLD--ESYTPSKISVRAGDGFHN--LKEIKTVEL-VKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81 (122)
Q Consensus 7 v~I~~i~ly~d~~~D--ESYTP~~I~I~~G~~~~d--L~ev~~v~l-~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~N 81 (122)
+.|+.|.|.--.... -|-.|+.+.|.+-....+ ...+...+. .+-.++...++.... ...+.+|++.|++|
T Consensus 42 I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~----~~~~~~i~l~i~sN 117 (135)
T PF07738_consen 42 IYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPP----RQPVRYIKLRILSN 117 (135)
T ss_dssp EEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS------S--EEEEEEEE--B
T ss_pred EEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCc----hhcCcEEEEEEEcC
Confidence 344555552222222 689999999997555444 578888886 455778888887321 12788999999999
Q ss_pred ccCCCCceeecEEEEcc
Q 033290 82 HLNGRDTHVRQIKIYGP 98 (122)
Q Consensus 82 hqnGrDTHIR~ikI~gp 98 (122)
|=+..=|-|-++||+|-
T Consensus 118 ~G~~~ytclyr~rVhG~ 134 (135)
T PF07738_consen 118 HGNEEYTCLYRFRVHGE 134 (135)
T ss_dssp SS-SSEEEE-EEEEEEE
T ss_pred CCCCceEEEEEEEEEee
Confidence 97777799999999994
No 12
>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome. PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.
Probab=95.85 E-value=0.048 Score=40.81 Aligned_cols=85 Identities=22% Similarity=0.226 Sum_probs=54.2
Q ss_pred eeeeeeeeeeecCCCCCCCcceEEEEeC----CCcCCc---eEeeEEEEec--CceeEEEEccCCCCCCCeEEEEEEEEE
Q 033290 7 FVLKLVVLYVDFKLDESYTPSKISVRAG----DGFHNL---KEIKTVELVK--PTGWVYISLSGNDPRDTFVNTFMLQIV 77 (122)
Q Consensus 7 v~I~~i~ly~d~~~DESYTP~~I~I~~G----~~~~dL---~ev~~v~l~~--p~GWv~i~l~~~~~~~~~l~~~~iQI~ 77 (122)
|.|++|.|-..- |+.-.|++|++++- -+|.|. .-..++++.+ ..||+.++++.. +...+.-|+|-
T Consensus 57 Vkl~si~i~~~~--~~~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~----KFqnV~sLtif 130 (152)
T PF06201_consen 57 VKLHSIIIKGPP--DDDSAPKTIKLFINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKFV----KFQNVNSLTIF 130 (152)
T ss_dssp EEEEEEEEE-----STTTSEEEEEEEES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--TT----T-TTEEEEEEE
T ss_pred eEEEEEEEEecc--CCCCCCeEEEEEECCCCCcCccccccCCCCceEEcCccccCCceEeeeeee----ccCCccEEEEE
Confidence 444544443321 89999999999997 234444 4455788876 889999998832 45678899999
Q ss_pred eeccccCCCCceeecEEEEc
Q 033290 78 VLSNHLNGRDTHVRQIKIYG 97 (122)
Q Consensus 78 I~~NhqnGrDTHIR~ikI~g 97 (122)
|..|+-++--|+|-.|.++|
T Consensus 131 ~~~n~g~~~~T~I~~i~l~G 150 (152)
T PF06201_consen 131 FEDNQGGDDVTRIYYIGLRG 150 (152)
T ss_dssp EEEETT--SS-EESEEEEEE
T ss_pred EeCCcCCCccEEEEEEEEEe
Confidence 99999989999999999998
No 13
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=93.77 E-value=1.3 Score=29.49 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=55.4
Q ss_pred EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEE--EEecCceeEEEEccCCCCCCCeEEEEEEEEEeecccc
Q 033290 6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTV--ELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHL 83 (122)
Q Consensus 6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v--~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhq 83 (122)
.+.|..|.|+.-. .+..+.|..+.|.+.++-.+..++... ......+.+.+.+. .++.+.+|+|.+.+-..
T Consensus 47 ~~~i~~i~i~~~~-~~~~~~~~~~~i~~s~dg~~w~~~~~~~~~~~~~~~~~~~~~~------~~~~~ryiri~~~~~~~ 119 (129)
T PF00754_consen 47 PYTISGISIQFRN-DGNNGRPKSFKIEYSNDGSNWTTVASQFYGNTNSGSVVTISFF------PPVKARYIRITVTSWNG 119 (129)
T ss_dssp EEEEEEEEEEEES-STTTEEEEEEEEEEESSSSSEEEEEETEEEESSSSSSEEEEEE------EEEEEEEEEEEEEEEES
T ss_pred eEecceeeecccc-cccceeeeeeeeeeecccccccccccceeeccCCCceEEEEeC------CCeEEEEEEEEEEEECC
Confidence 3567888888774 333379999999999888888888774 44456666776666 57999999999987444
Q ss_pred CCCCce
Q 033290 84 NGRDTH 89 (122)
Q Consensus 84 nGrDTH 89 (122)
++.-++
T Consensus 120 ~~~~~~ 125 (129)
T PF00754_consen 120 NNGWVS 125 (129)
T ss_dssp CSSEEE
T ss_pred CCceEE
Confidence 444333
No 14
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=90.30 E-value=0.82 Score=46.12 Aligned_cols=80 Identities=26% Similarity=0.422 Sum_probs=65.3
Q ss_pred eeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEe-cCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCc
Q 033290 10 KLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELV-KPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDT 88 (122)
Q Consensus 10 ~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~-~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDT 88 (122)
+.+++++|-..|+-|-=+-|...+|.-..||..++.++|+ .--||+.--+.++ ..|||..+.-. --.
T Consensus 2936 ~~vSv~vDNsRD~G~kvtSmtF~t~~a~~~~~~ikqv~LdS~~~GWvt~~l~D~---------~~IkIelKGPe---~t~ 3003 (3738)
T KOG1428|consen 2936 RYVSVHVDNSRDLGNKVTSMTFLTGKAVEDLCRIKQVDLDSRHIGWVTSELPDN---------HIIKIELKGPE---NTL 3003 (3738)
T ss_pred eEEEEEeccchhcccceeeeeeecccchhhhhcceeecccccccceeeeecCCc---------ceEEEEecCCC---ccc
Confidence 4678999999999999999999999999999999999999 5689998776621 46677764322 136
Q ss_pred eeecEEEEccCCC
Q 033290 89 HVRQIKIYGPRPN 101 (122)
Q Consensus 89 HIR~ikI~gp~~~ 101 (122)
+|||++|+|-+-.
T Consensus 3004 RvRQv~vLG~~Ae 3016 (3738)
T KOG1428|consen 3004 RVRQVKVLGWKAE 3016 (3738)
T ss_pred eeeeeeecccchh
Confidence 8999999997753
No 15
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=89.82 E-value=5 Score=27.73 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=38.8
Q ss_pred CcceEEEEeCCCcCCceEeeE----EEEe-cCc--eeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEEc
Q 033290 25 TPSKISVRAGDGFHNLKEIKT----VELV-KPT--GWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYG 97 (122)
Q Consensus 25 TP~~I~I~~G~~~~dL~ev~~----v~l~-~p~--GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~g 97 (122)
-|....|.++++-.++..+.. ..+. ++. ..+.+.+. .++.+.||+|.+..++. -..| .+.|||
T Consensus 74 ~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~------~pv~aRyvRl~~~~~~~---~~~l-e~evyG 143 (143)
T cd00057 74 WVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFP------PPIVARYIRILPTTWNG---NISL-RLELYG 143 (143)
T ss_pred eeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCC------CCEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence 355666666655555555443 2222 121 34445554 46899999999998665 6777 888876
No 16
>PRK10154 hypothetical protein; Provisional
Probab=73.17 E-value=7.8 Score=28.89 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=40.4
Q ss_pred ceEEEEeC--CC-cCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEEcc
Q 033290 27 SKISVRAG--DG-FHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 98 (122)
Q Consensus 27 ~~I~I~~G--~~-~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~gp 98 (122)
++++++.| ++ ...|...+.++=++.++|..|.... + .-|| .=.|.|--|-.|.+| .-+|||+|-
T Consensus 67 ~~v~V~F~~~ng~s~tl~f~~~lk~~q~T~W~~~~~~~-~----~kRC-V~kI~v~G~s~~Ss~--~AglKVlG~ 133 (134)
T PRK10154 67 SGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDN-D----NKRC-VSKITFSGHTVNSSD--MATLKIIGD 133 (134)
T ss_pred EEEEEEEeccCCCceEEecchhhccCCccccEEccCCc-c----ccce-eeEEEEEecccCCcc--ceeeEEecC
Confidence 34555555 32 2233344444455788999987441 1 1233 347888999999999 789999984
No 17
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=41.68 E-value=65 Score=23.97 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=32.0
Q ss_pred eeeeeeeeecCCCCCCCcceEEEEeC--------CCcCCceEeeEEEEe-cCceeEEEEccCCCC--CCCeEEEEEEEEE
Q 033290 9 LKLVVLYVDFKLDESYTPSKISVRAG--------DGFHNLKEIKTVELV-KPTGWVYISLSGNDP--RDTFVNTFMLQIV 77 (122)
Q Consensus 9 I~~i~ly~d~~~DESYTP~~I~I~~G--------~~~~dL~ev~~v~l~-~p~GWv~i~l~~~~~--~~~~l~~~~iQI~ 77 (122)
=+.|.||+... +.+..+..+.|.+= ++......+.+..+. ...||+.+++...-. ..++..-+-|+|.
T Consensus 122 ~AeLrl~~~~~-~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~l~s~~v~~~~~gW~~~dvt~~v~~W~~~~~~n~gl~l~ 200 (238)
T PF00688_consen 122 SAELRLYKQPP-SNSSSPRTVRVSVYQVLQPGRRNGSQSKRLLDSRTVDPSDSGWVSFDVTSAVRRWLRNPEKNLGLELE 200 (238)
T ss_dssp EEEEEEEB--------TT--EEEEEEEE-------SSS-EEEEEEEEE---S--EEEEE-HHHHHHHHH---S-EEEEEE
T ss_pred EEEEEEEeecc-ccccccccccccccccccccccccccceeeeeeeeeccccCCceeEhHHHHHHHHHhCCCCCccEEEE
Confidence 35678888752 22556665555441 233344445444444 238999999863100 0001112334444
Q ss_pred eeccccCCCCceeecEEEEccC
Q 033290 78 VLSNHLNGRDTHVRQIKIYGPR 99 (122)
Q Consensus 78 I~~NhqnGrDTHIR~ikI~gp~ 99 (122)
+. -.+|++.+......-+++
T Consensus 201 ~~--~~~~~~~~~~~~~~~~~~ 220 (238)
T PF00688_consen 201 VE--DSNGRSLAVHSSGFPGDR 220 (238)
T ss_dssp EE--EEETTEEEEEE-------
T ss_pred EE--ECCCCccCcccccccccc
Confidence 42 356677776666555543
No 18
>PF08475 Baculo_VP91_N: Viral capsid protein 91 N-terminal; InterPro: IPR013682 This domain is found in Baculoviridae including the nucleopolyhedrovirus at the N terminus of the viral capsid protein 91 (VP91) [].
Probab=33.33 E-value=77 Score=24.80 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=38.2
Q ss_pred eecCCCCCCCc--ceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290 16 VDFKLDESYTP--SKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR 86 (122)
Q Consensus 16 ~d~~~DESYTP--~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr 86 (122)
+|| ++.++.| ....-|+...+.|-. ...+.--+||+.+........+. ..|+.+-++.|..+|.
T Consensus 88 FnF-~~Q~f~~~~~~~~~rV~~~~~d~~---kF~~~~DDGwv~~~CP~~~~FD~---~~Cvp~p~C~~~~~g~ 153 (183)
T PF08475_consen 88 FNF-LEQSFEPVTNDNEPRVRPHPNDPT---KFIARGDDGWVDMDCPENERFDG---NKCVPIPPCDNKPPGN 153 (183)
T ss_pred eec-ccceeccCCCCcccceecCCCCCc---eEEEEecCCcEEEeCCCcccccc---cceeecCccCCCCCCc
Confidence 344 5666663 233333333343333 34556678999999843222221 2789999999999996
No 19
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=32.32 E-value=1.5e+02 Score=19.46 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccC
Q 033290 22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSG 61 (122)
Q Consensus 22 ESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~ 61 (122)
.+..|..+.|.+|.... ....+....||..+.+.+
T Consensus 44 ~~~~~~~~~v~ag~~~~-----~~w~l~~s~gwYDl~v~~ 78 (89)
T PF05506_consen 44 GGGGPWTYTVAAGQTVS-----LTWPLAASGGWYDLTVTG 78 (89)
T ss_pred CCCCCEEEEECCCCEEE-----EEEeecCCCCcEEEEEEc
Confidence 44669999999996642 234556789999999983
No 20
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=30.51 E-value=20 Score=24.20 Aligned_cols=16 Identities=44% Similarity=0.789 Sum_probs=12.2
Q ss_pred CCCCCCcceEEEEeCC
Q 033290 20 LDESYTPSKISVRAGD 35 (122)
Q Consensus 20 ~DESYTP~~I~I~~G~ 35 (122)
.|..|+|+.|.+++|.
T Consensus 28 ~~~~f~P~~i~v~~G~ 43 (104)
T PF13473_consen 28 TDFGFSPSTITVKAGQ 43 (104)
T ss_dssp --EEEES-EEEEETTC
T ss_pred cCCeEecCEEEEcCCC
Confidence 3779999999999995
No 21
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=29.08 E-value=1.7e+02 Score=20.45 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=28.5
Q ss_pred EecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC--CCceeecEEEEccCCCCC
Q 033290 48 LVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG--RDTHVRQIKIYGPRPNPI 103 (122)
Q Consensus 48 l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG--rDTHIR~ikI~gp~~~~~ 103 (122)
++...||+.|.|. .+...-+|.|-.-..+. ..+-.|-++|+|-.....
T Consensus 27 ~~g~~~~~~I~L~--------~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~ 76 (135)
T PF07738_consen 27 FEGSKGWLTIELS--------EPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPD 76 (135)
T ss_dssp EETT-EEEEEEEE--------EEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSST
T ss_pred cCCCceEEEEEcC--------CcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccc
Confidence 3456799999998 23344445543333333 899999999999776554
No 22
>PF10807 DUF2541: Protein of unknown function (DUF2541); InterPro: IPR020240 This entry represents proteins found in the Gammaproteobacteria that have no known function.
Probab=20.80 E-value=2.7e+02 Score=20.83 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=29.0
Q ss_pred ceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEEc
Q 033290 40 LKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYG 97 (122)
Q Consensus 40 L~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~g 97 (122)
|...+.+.=.+.+||+.|.... + .-|| .=.|.|..+-.|+-| .-.|||.|
T Consensus 83 l~~~~~ikeg~tT~Wi~i~sdn-~----nkRC-VskI~~~G~t~nSS~--~A~lKvig 132 (134)
T PF10807_consen 83 LNFPRSIKEGQTTDWININSDN-D----NKRC-VSKITFSGHTVNSSD--MASLKVIG 132 (134)
T ss_pred EcccccccCCCccCcEEecCCC-C----ccee-eeEEEEEeeeccCcc--ceeeEeec
Confidence 4444444555789999997542 1 1233 235666666666654 34577776
No 23
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=20.35 E-value=72 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCCCCcceEEEEeCCCcCCceEeeE
Q 033290 19 KLDESYTPSKISVRAGDGFHNLKEIKT 45 (122)
Q Consensus 19 ~~DESYTP~~I~I~~G~~~~dL~ev~~ 45 (122)
....+|||+.|.+-.-.++..|.....
T Consensus 51 ~g~~TYtPRlL~~Dlkg~lGsL~~~g~ 77 (115)
T PF10644_consen 51 SGTVTYTPRLLLFDLKGGLGSLRKYGY 77 (115)
T ss_pred CCCeeECCcEEEEecCCCcCccccccc
Confidence 467899999999999888888876554
Done!