Query 033291
Match_columns 122
No_of_seqs 166 out of 1082
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 20:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 3.9E-36 1.3E-40 223.6 10.6 113 1-114 16-231 (248)
2 1kca_A Repressor protein CI; g 99.2 2E-10 6.9E-15 75.1 9.6 79 3-115 31-109 (109)
3 1umu_A UMUD'; induced mutagene 99.0 3.5E-09 1.2E-13 69.6 8.6 77 1-111 37-114 (116)
4 2hnf_A Repressor protein CI101 98.6 2.9E-07 9.8E-12 61.7 8.9 70 3-106 62-131 (133)
5 3bdn_A Lambda repressor; repre 98.6 1.9E-07 6.5E-12 67.4 7.6 79 3-115 158-236 (236)
6 1jhf_A LEXA repressor; LEXA SO 98.5 7.1E-07 2.4E-11 63.3 10.0 77 1-110 120-198 (202)
7 3k2z_A LEXA repressor; winged 97.9 5.9E-05 2E-09 53.3 8.8 74 1-108 120-193 (196)
8 2fjr_A Repressor protein CI; g 96.8 0.013 4.4E-07 40.3 9.6 41 8-56 121-161 (189)
9 1w4s_A Polybromo, polybromo 1 90.6 1.2 4.2E-05 30.5 7.3 90 8-108 11-108 (174)
10 3k2z_A LEXA repressor; winged 88.8 2.8 9.6E-05 28.8 8.1 12 23-34 123-134 (196)
11 2pp6_A Gifsy-2 prophage ATP-bi 60.4 8.8 0.0003 24.3 3.2 26 22-51 62-87 (102)
12 2do3_A Transcription elongatio 53.1 28 0.00095 20.4 4.4 34 50-83 20-53 (69)
13 2dgy_A MGC11102 protein; EIF-1 51.1 13 0.00045 23.7 3.0 11 24-34 54-64 (111)
14 3i4o_A Translation initiation 50.3 6.8 0.00023 23.6 1.4 12 23-34 53-64 (79)
15 1pcq_O Groes protein; chaperon 50.1 28 0.00095 21.6 4.3 41 5-49 3-43 (97)
16 1we3_O CPN10(groes); chaperoni 49.5 45 0.0015 20.8 5.6 90 5-104 8-99 (100)
17 1jt8_A EIF-1A, probable transl 48.1 6.7 0.00023 24.8 1.2 10 24-33 59-68 (102)
18 3v2d_O 50S ribosomal protein L 45.4 21 0.00073 23.2 3.3 31 67-98 75-105 (122)
19 1d7q_A Translation initiation 45.0 33 0.0011 22.9 4.3 10 24-33 70-79 (143)
20 4dov_A ORC1, origin recognitio 40.3 85 0.0029 21.3 8.3 79 23-109 38-130 (163)
21 2vob_A Trypanothione synthetas 38.5 1.2E+02 0.0042 25.0 7.5 39 22-60 110-148 (652)
22 2hd9_A UPF0310 protein PH1033; 37.4 28 0.00094 23.0 3.0 28 22-49 33-63 (145)
23 1whi_A Ribosomal protein L14; 37.2 25 0.00085 22.9 2.6 31 67-98 75-105 (122)
24 3a2z_A Bifunctional glutathion 37.1 1E+02 0.0036 21.4 8.6 38 22-59 110-148 (197)
25 3r8s_K 50S ribosomal protein L 37.0 22 0.00076 23.1 2.4 33 67-99 75-107 (122)
26 3bbo_M Ribosomal protein L14; 36.0 25 0.00086 22.8 2.5 31 68-99 76-106 (121)
27 4dt4_A FKBP-type 16 kDa peptid 34.0 86 0.0029 21.1 5.1 35 23-59 112-146 (169)
28 2p5d_A UPF0310 protein mjecl36 31.7 32 0.0011 22.7 2.6 27 22-49 36-64 (147)
29 2kr7_A FKBP-type peptidyl-prol 31.2 1.1E+02 0.0038 19.9 5.5 35 23-59 93-127 (151)
30 1wid_A DNA-binding protein RAV 31.1 70 0.0024 20.4 4.1 16 22-37 90-105 (130)
31 1vq8_K 50S ribosomal protein L 29.9 34 0.0012 22.5 2.4 32 67-99 86-117 (132)
32 3g1j_A Integron cassette prote 29.7 49 0.0017 20.4 2.9 59 49-110 15-73 (93)
33 3u5e_V L17A, YL32, 60S ribosom 29.5 36 0.0012 22.6 2.5 32 67-99 91-122 (137)
34 2z0t_A Putative uncharacterize 29.0 58 0.002 20.6 3.3 23 21-48 31-53 (109)
35 1vzm_A Osteocalcin; calcium-bi 27.3 9.9 0.00034 20.5 -0.5 7 90-96 38-44 (45)
36 3mea_A SAGA-associated factor 26.9 87 0.003 21.6 4.2 83 22-106 43-138 (180)
37 1xne_A Hypothetical protein PF 26.0 60 0.002 20.6 3.0 22 21-48 32-53 (113)
38 3cgm_A SLYD, peptidyl-prolyl C 25.9 1.4E+02 0.0049 19.6 5.1 35 23-59 84-118 (158)
39 3p8d_A Medulloblastoma antigen 25.1 41 0.0014 19.4 1.9 27 24-52 7-33 (67)
40 3j21_J 50S ribosomal protein L 25.0 31 0.0011 23.0 1.5 32 67-99 95-126 (141)
41 1p3h_A 10 kDa chaperonin; beta 23.4 1.4E+02 0.0047 18.4 7.1 42 5-50 5-46 (99)
42 2coa_A Protein kinase C, D2 ty 23.3 57 0.0019 21.2 2.5 33 74-106 26-62 (125)
43 3qec_A Putative carbohydrate b 20.9 18 0.00063 24.3 -0.2 35 69-105 102-136 (150)
44 2d9z_A Protein kinase C, NU ty 20.8 96 0.0033 20.3 3.2 30 74-103 26-59 (129)
45 1yez_A MM1357; MAR30, autostru 20.6 42 0.0014 18.8 1.4 10 48-57 44-53 (68)
46 2jyx_A Lipoprotein SPR; soluti 20.6 53 0.0018 21.1 2.0 14 22-35 66-79 (136)
47 2k1g_A Lipoprotein SPR; soluti 20.6 44 0.0015 21.8 1.6 14 22-35 66-79 (135)
48 3mt1_A Putative carboxynorsper 20.6 96 0.0033 23.1 3.7 25 8-35 297-321 (365)
49 3ic8_A Uncharacterized GST-lik 20.5 1.5E+02 0.005 21.1 4.6 36 23-58 253-288 (310)
50 2lkt_A Retinoic acid receptor 20.2 55 0.0019 20.6 2.0 15 21-35 5-19 (125)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=3.9e-36 Score=223.56 Aligned_cols=113 Identities=33% Similarity=0.517 Sum_probs=96.4
Q ss_pred CccccCCCCCEEEEEeccCC------------CCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecC-------C-
Q 033291 1 MLPTINLTGDLVLAERISTR------------FNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD-------P- 60 (122)
Q Consensus 1 M~Ptl~~~Gd~vlv~~~~~~------------~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~-------~- 60 (122)
|+|||+ .||+|+|+|+.|. ..++++||||+|+.|.+++..+||||+|+|||+|+++++ +
T Consensus 16 M~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i~~~~~~l~ING~ 94 (248)
T 1b12_A 16 MMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPG 94 (248)
T ss_dssp TTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEETTTTEEEEETT
T ss_pred cccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEEEcCceEEEECCc
Confidence 999999 9999999998764 358999999999998777789999999999999998765 1
Q ss_pred ----------CCC--------C----------------------------------------------------------
Q 033291 61 ----------KSS--------D---------------------------------------------------------- 64 (122)
Q Consensus 61 ----------~~~--------~---------------------------------------------------------- 64 (122)
... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~~~~~~~ 174 (248)
T 1b12_A 95 CSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGM 174 (248)
T ss_dssp CCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEEEEEEECTTCCCCGGG
T ss_pred cccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCccceeEecCCccccccc
Confidence 100 0
Q ss_pred -------CCceEEeeCCeEEEeeCCCCCCCCCCceecccCCCeeEEEEEEEeCCCCc
Q 033291 65 -------KFETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWPPKDF 114 (122)
Q Consensus 65 -------~~~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~ 114 (122)
....++||+|+|||||||+++|.||||||+||+++|+|||++++||+++.
T Consensus 175 ~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 175 YYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp SCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred hhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 01246899999999999999999999999999999999999999998864
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.18 E-value=2e-10 Score=75.12 Aligned_cols=79 Identities=25% Similarity=0.406 Sum_probs=59.8
Q ss_pred cccCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEeeCC
Q 033291 3 PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIEGDN 82 (122)
Q Consensus 3 Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn 82 (122)
|+|. +||.|+|++.. .++.||+|++..+. ++.++||+...+ |.+++.+||
T Consensus 31 p~i~-~Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~-----------------------~~~~L~s~N 80 (109)
T 1kca_A 31 PSFP-DGMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS-----------------------GQVFLQPLN 80 (109)
T ss_dssp SCCC-TTCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET-----------------------TEEEEECSS
T ss_pred CeeC-CCCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC-----------------------CEEEEEECC
Confidence 9998 99999999743 69999999999753 478999997643 346777888
Q ss_pred CCCCCCCCceecccCCCeeEEEEEEEeCCCCcc
Q 033291 83 IYESNDSRKFGAVPYGLIEGRVFLRIWPPKDFG 115 (122)
Q Consensus 83 ~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 115 (122)
+.. ....+- ..-.|+|+|++.+||+..|+
T Consensus 81 ~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 81 PQY--PMIPCN--ESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp TTS--CCEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred CCC--CCEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence 632 122221 45789999999999987664
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.97 E-value=3.5e-09 Score=69.56 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=54.5
Q ss_pred Ccc-ccCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEe
Q 033291 1 MLP-TINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIE 79 (122)
Q Consensus 1 M~P-tl~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~ 79 (122)
|+| +|+ +||.|++++.. .++.||+|++..+ +...+||+...+ .+++.
T Consensus 37 M~p~~i~-~Gd~v~vd~~~----~~~~gdivv~~~~---~~~~vKr~~~~~------------------------~~~L~ 84 (116)
T 1umu_A 37 MIDGGIS-DGDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQLRP------------------------TVQLI 84 (116)
T ss_dssp TGGGTCC-TTCEEEEETTS----CCCTTCEEEEEET---TEEEEEEEECSS------------------------SCEEE
T ss_pred cCCCCCC-CCCEEEEEcCC----CCCCCCEEEEEEC---CEEEEEEEEeCC------------------------cEEEE
Confidence 999 898 99999999743 6999999999975 478999998743 25577
Q ss_pred eCCCCCCCCCCceecccCCCeeEEEEEEEeCC
Q 033291 80 GDNIYESNDSRKFGAVPYGLIEGRVFLRIWPP 111 (122)
Q Consensus 80 gdn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~ 111 (122)
+||+. +....+..-..-.|+|+|++.+..+
T Consensus 85 s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~ 114 (116)
T 1umu_A 85 PMNSA--YSPITISSEDTLDVFGVVIHVVKAA 114 (116)
T ss_dssp CSSTT--SCCEECCTTSCEEEEEEEEEEEC--
T ss_pred CCCCC--CCCEEcCCCCeEEEEEEEEEEEEec
Confidence 88863 2222221112347999999876644
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.61 E-value=2.9e-07 Score=61.74 Aligned_cols=70 Identities=20% Similarity=0.246 Sum_probs=50.7
Q ss_pred cccCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEeeCC
Q 033291 3 PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIEGDN 82 (122)
Q Consensus 3 Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn 82 (122)
|+|. +||.|+|++. ..++.||+|++.... ++..+||+...+ |.+++.++|
T Consensus 62 p~i~-~Gd~v~vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~-----------------------~~~~L~s~N 111 (133)
T 2hnf_A 62 TSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFAKLIRDS-----------------------GQVFLQPLN 111 (133)
T ss_dssp CCCC-TTCEEEEETT----SCCCTTSEEEEEETT--TEEEEEEEEEET-----------------------TEEEEECSS
T ss_pred CccC-CCCEEEEccC----CCCCCCCEEEEEECC--CEEEEEEEEEeC-----------------------CeEEEEECC
Confidence 9998 9999999974 379999999998753 478999997543 346677777
Q ss_pred CCCCCCCCceecccCCCeeEEEEE
Q 033291 83 IYESNDSRKFGAVPYGLIEGRVFL 106 (122)
Q Consensus 83 ~~~S~DSR~~G~V~~~~I~Gkv~~ 106 (122)
+.. .....- ..-.|+|+|++
T Consensus 112 ~~y--~~~~~~--~~~~IiG~Vv~ 131 (133)
T 2hnf_A 112 PQY--PMIPCN--ESCSVVGKVIA 131 (133)
T ss_dssp TTS--CCEECS--TTEEEEEEEEE
T ss_pred CCC--CCEEcC--CCCEEEEEEEE
Confidence 632 122111 34579999986
No 5
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.56 E-value=1.9e-07 Score=67.36 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=56.5
Q ss_pred cccCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEeeCC
Q 033291 3 PTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIEGDN 82 (122)
Q Consensus 3 Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn 82 (122)
|+|. +||.|+|++-. .+..||+|++... .+...+||+...+| .+++.+||
T Consensus 158 P~i~-~Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~~-----------------------~~~L~s~N 207 (236)
T 3bdn_A 158 PSFP-DGMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGSG-----------------------QVFLQPLN 207 (236)
T ss_dssp SCCC-SSCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCSS-----------------------SCEEECSS
T ss_pred CcCC-CCCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcCC-----------------------cEEEEeCC
Confidence 9998 99999998743 7899999999973 24789999976443 35566777
Q ss_pred CCCCCCCCceecccCCCeeEEEEEEEeCCCCcc
Q 033291 83 IYESNDSRKFGAVPYGLIEGRVFLRIWPPKDFG 115 (122)
Q Consensus 83 ~~~S~DSR~~G~V~~~~I~Gkv~~~~~p~~~~~ 115 (122)
+.. ....+- ..-.|+|+|++.+||...|+
T Consensus 208 ~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 208 PQY--PMIPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp TTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred CCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence 532 111111 34579999999999886653
No 6
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.54 E-value=7.1e-07 Score=63.25 Aligned_cols=77 Identities=25% Similarity=0.232 Sum_probs=53.8
Q ss_pred Cccc-cCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEe
Q 033291 1 MLPT-INLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIE 79 (122)
Q Consensus 1 M~Pt-l~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~ 79 (122)
|+|+ |. +||.|+|++. ..++.||+|++... +...+||+. .+|+. +++.
T Consensus 120 M~p~~i~-~Gd~v~vd~~----~~~~~G~i~v~~~~---~~~~vKrl~-~~~~~----------------------~~l~ 168 (202)
T 1jhf_A 120 MKDIGIM-DGDLLAVHKT----QDVRNGQVVVARID---DEVTVKRLK-KQGNK----------------------VELL 168 (202)
T ss_dssp TGGGTCC-TTCEEEEEEC----SCCCTTSEEEEEET---TEEEEEEEE-EETTE----------------------EEEE
T ss_pred CCCCCCC-CCCEEEEecc----CCcCCCeEEEEEEC---CEEEEEEEE-EeCCE----------------------EEEE
Confidence 9999 98 9999999974 36899999999973 578999997 45554 5556
Q ss_pred eCCCCCCCCCCceec-ccCCCeeEEEEEEEeC
Q 033291 80 GDNIYESNDSRKFGA-VPYGLIEGRVFLRIWP 110 (122)
Q Consensus 80 gdn~~~S~DSR~~G~-V~~~~I~Gkv~~~~~p 110 (122)
+||+. +....+.. -..-.|+|+|++.+..
T Consensus 169 s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~ 198 (202)
T 1jhf_A 169 PENSE--FKPIVVDLRQQSFTIEGLAVGVIRN 198 (202)
T ss_dssp CSSTT--CCCEEEETTTSCEEEEEEEEEEEEC
T ss_pred ECCCC--CCCEEccCCCCceEEEEEEEEEEEc
Confidence 67752 12221110 1233599999987653
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=97.93 E-value=5.9e-05 Score=53.27 Aligned_cols=74 Identities=23% Similarity=0.167 Sum_probs=51.8
Q ss_pred CccccCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEee
Q 033291 1 MLPTINLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIEG 80 (122)
Q Consensus 1 M~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~g 80 (122)
.+|++. +||.|+|++. ..++.||+|++... ++..+||+.-.+ |.+++..
T Consensus 120 ~~p~i~-~GD~viv~~~----~~~~~G~ivv~~~~---~~~~vKr~~~~~-----------------------~~~~L~~ 168 (196)
T 3k2z_A 120 IEEHIC-DGDLVLVRRQ----DWAQNGDIVAAMVD---GEVTLAKFYQRG-----------------------DTVELRP 168 (196)
T ss_dssp GGGTCC-TTCEEEEEEC----SCCCTTCEEEEEET---TEEEEEEEEEET-----------------------TEEEEEC
T ss_pred CCCCCC-CCCEEEEecc----CcCCCCCEEEEEEC---CcEEEEEEEEEC-----------------------CEEEEEE
Confidence 069998 9999999974 36899999999875 589999995432 3466667
Q ss_pred CCCCCCCCCCceecccCCCeeEEEEEEE
Q 033291 81 DNIYESNDSRKFGAVPYGLIEGRVFLRI 108 (122)
Q Consensus 81 dn~~~S~DSR~~G~V~~~~I~Gkv~~~~ 108 (122)
+|+.. .....- -..-.|+|+|++.+
T Consensus 169 ~N~~y--~~i~i~-~~~~~i~G~Vv~~~ 193 (196)
T 3k2z_A 169 ANREM--SSMFFR-AEKVKILGKVVGVF 193 (196)
T ss_dssp SCTTS--CCEEEE-GGGCEEEEEEEEEE
T ss_pred CCCCC--CCEEec-CCCEEEEEEEEEEE
Confidence 77532 122211 12347999998865
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=96.84 E-value=0.013 Score=40.35 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEE
Q 033291 8 TGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSY 56 (122)
Q Consensus 8 ~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~ 56 (122)
+||.|+|++- .+..|+++++... +...+||+.-.+|+.+.+
T Consensus 121 ~Gd~v~Vd~~-----~~~~g~i~vv~~~---g~~~vKrl~~~~~~~i~L 161 (189)
T 2fjr_A 121 EGKIYFVDKQ-----ASLSDGLWLVDIK---GAISIRELTKLPGRKLHV 161 (189)
T ss_dssp TTEEEEEETT-----CCSCSEEEEEEET---TEEEEEEEEEETTTEEEE
T ss_pred CCcEEEEEcC-----CccCCCEEEEEeC---CeEEEEEEEECCCCEEEE
Confidence 7999999963 3677999999874 578999998777665544
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=90.63 E-value=1.2 Score=30.48 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=45.1
Q ss_pred CCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEc----CCCEEEEecC----CCCCCCCceEEeeCCeEEEe
Q 033291 8 TGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGM----EGDRVSYVAD----PKSSDKFETVVVPQGHVWIE 79 (122)
Q Consensus 8 ~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~----pGd~v~~~~~----~~~~~~~~~~~vp~~~~~v~ 79 (122)
.+++.+-..+.+.-..++.||.|.+..+..+...+|.||..+ .|+ ..+... +...........-++++|..
T Consensus 11 ~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~-~~v~v~WfyRPeet~~~~~~~~~~~EvF~S 89 (174)
T 1w4s_A 11 SLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGE-KWLYGCWFYRPNETFHLATRKFLEKEVFKS 89 (174)
T ss_dssp ---------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCC-EEEEEEEEECGGGSCCCTTCEEETTEEEEE
T ss_pred CCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCC-EEEEEEEecCHHHcccccCCcCCCCeeEEe
Confidence 445555444444446799999999998765566788888764 232 222210 10011001111127777763
Q ss_pred eCCCCCCCCCCceecccCCCeeEEEEEEE
Q 033291 80 GDNIYESNDSRKFGAVPYGLIEGRVFLRI 108 (122)
Q Consensus 80 gdn~~~S~DSR~~G~V~~~~I~Gkv~~~~ 108 (122)
.++--+|.+.|+||+....
T Consensus 90 ----------~~~d~~~~~~I~gkC~V~~ 108 (174)
T 1w4s_A 90 ----------DYYNKVPVSKILGKCVVMF 108 (174)
T ss_dssp ----------EEEEEEEGGGEEEEEEEEE
T ss_pred ----------CCcceecHHHeeeeEEEEE
Confidence 3566789999999987544
No 10
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.82 E-value=2.8 Score=28.81 Aligned_cols=12 Identities=58% Similarity=1.190 Sum_probs=9.1
Q ss_pred CCCCCcEEEEEc
Q 033291 23 KVCPGDVVLVRS 34 (122)
Q Consensus 23 ~~~~GDiVv~~~ 34 (122)
.+..||+|+++.
T Consensus 123 ~i~~GD~viv~~ 134 (196)
T 3k2z_A 123 HICDGDLVLVRR 134 (196)
T ss_dssp TCCTTCEEEEEE
T ss_pred CCCCCCEEEEec
Confidence 577888888875
No 11
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=60.44 E-value=8.8 Score=24.25 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCCCCCcEEEEEcCCCCCceeEEEEEEcCC
Q 033291 22 NKVCPGDVVLVRSPVVPRRIVTKRVIGMEG 51 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~~~~~~~iKRV~a~pG 51 (122)
-.|++||.|++.- ..++++|---.-|
T Consensus 62 YrP~r~D~Vv~~G----k~y~Vtr~~~~ng 87 (102)
T 2pp6_A 62 VIPRRGDRVVLRG----SEFTVTRIRRFNG 87 (102)
T ss_dssp CCCCTTCEEEETT----EEEEEEEEEEETT
T ss_pred cccCCCCEEEEcC----cEEEEEEEEEECC
Confidence 4799999999984 4678888755444
No 12
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=53.10 E-value=28 Score=20.36 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=15.4
Q ss_pred CCCEEEEecCCCCCCCCceEEeeCCeEEEeeCCC
Q 033291 50 EGDRVSYVADPKSSDKFETVVVPQGHVWIEGDNI 83 (122)
Q Consensus 50 pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn~ 83 (122)
+||+|.+..+.......--..+.++.+.+++|..
T Consensus 20 ~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t 53 (69)
T 2do3_A 20 MGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLT 53 (69)
T ss_dssp TTCEEEESSSTTTTCEEEEEEECSSCEEEEESSS
T ss_pred CCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCC
Confidence 4555555444322222333444455555555554
No 13
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.13 E-value=13 Score=23.69 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=7.9
Q ss_pred CCCCcEEEEEc
Q 033291 24 VCPGDVVLVRS 34 (122)
Q Consensus 24 ~~~GDiVv~~~ 34 (122)
+.+||+|++..
T Consensus 54 I~~GD~VlVe~ 64 (111)
T 2dgy_A 54 IKRGDFLIVDP 64 (111)
T ss_dssp CCSSCEEEEEE
T ss_pred EcCCCEEEEEe
Confidence 66777777764
No 14
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=50.35 E-value=6.8 Score=23.58 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=8.3
Q ss_pred CCCCCcEEEEEc
Q 033291 23 KVCPGDVVLVRS 34 (122)
Q Consensus 23 ~~~~GDiVv~~~ 34 (122)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 467777777764
No 15
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=50.11 E-value=28 Score=21.63 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=22.3
Q ss_pred cCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEc
Q 033291 5 INLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGM 49 (122)
Q Consensus 5 l~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~ 49 (122)
|+|-+|+|+|.+... .+-..|-|++=.. .........|+|+
T Consensus 3 i~PL~DRVlVk~~e~--e~kT~gGI~LP~s--akeKp~~G~VvAV 43 (97)
T 1pcq_O 3 IRPLHDRVIVKRKEV--ETKSAGGIVLTGS--AAAKSTRGEVLAV 43 (97)
T ss_dssp EEECSSEEEEEECCT--TCTTTTSSCCCCC--CSCCCCEEEEEEE
T ss_pred ceEcCCEEEEEEccc--cccccceEEeCcc--cccCCcccEEEEE
Confidence 345689999998652 2334455544221 1234455566555
No 16
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=49.50 E-value=45 Score=20.78 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=44.0
Q ss_pred cCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCCCCCCCCceEEeeCCeEEEeeCCCC
Q 033291 5 INLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADPKSSDKFETVVVPQGHVWIEGDNIY 84 (122)
Q Consensus 5 l~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn~~ 84 (122)
|+|-+|+|+|.+... .+-..|-|++=. ..........|+|+.-... .+++. .-+..|..|.-.+.+...-
T Consensus 8 i~PL~DRVlVk~~e~--e~kT~gGI~LP~--sakeKp~~G~VvAVG~G~~--~~~G~----~~p~~VkvGD~Vlf~ky~G 77 (100)
T 1we3_O 8 IKPLGDRVVVKRIEE--EPKTKGGIVLPD--TAKEKPQKGKVIAVGTGRV--LENGQ----RVPLEVKEGDIVVFAKYGG 77 (100)
T ss_dssp EEECTTCEEEEECCC--CSSCTTCCCCCT--TTSCCCSEEEESCCCCCEE--CTTSC----EECCSCCTTCEEEECTTCS
T ss_pred eEEeCCEEEEEEccc--cccccceEEeCc--ccccCCcCCEEEEECCCcC--CCCCC----EEeeecCCCCEEEECCCCC
Confidence 455789999998642 344456665532 2234556677777642221 11110 1112233344434433221
Q ss_pred --CCCCCCceecccCCCeeEEE
Q 033291 85 --ESNDSRKFGAVPYGLIEGRV 104 (122)
Q Consensus 85 --~S~DSR~~G~V~~~~I~Gkv 104 (122)
--+|.-.|=.+..++|+|.+
T Consensus 78 tevk~dgeeyli~re~DIlavi 99 (100)
T 1we3_O 78 TEIEIDGEEYVILSERDLLAVL 99 (100)
T ss_dssp EEEECSSCEEEEECTTTEEEEE
T ss_pred eEEEECCEEEEEEEhHHEEEEe
Confidence 12455555666667777653
No 17
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=48.05 E-value=6.7 Score=24.76 Aligned_cols=10 Identities=60% Similarity=0.923 Sum_probs=4.9
Q ss_pred CCCCcEEEEE
Q 033291 24 VCPGDVVLVR 33 (122)
Q Consensus 24 ~~~GDiVv~~ 33 (122)
+.+||+|++.
T Consensus 59 I~~GD~VlVe 68 (102)
T 1jt8_A 59 VREGDVVIVK 68 (102)
T ss_dssp CCSCEEEEEC
T ss_pred ecCCCEEEEE
Confidence 4445555544
No 18
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=45.43 E-value=21 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYG 98 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~ 98 (122)
..+...+|.+.++.++. +..-+|-||||+++
T Consensus 75 ~~i~FddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 75 SAIRFDDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp CEEEESSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred cEEEcCCcEEEEECCCC-CEeeeEEEccchHH
Confidence 34566667777776654 78899999999975
No 19
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=45.01 E-value=33 Score=22.89 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=5.1
Q ss_pred CCCCcEEEEE
Q 033291 24 VCPGDVVLVR 33 (122)
Q Consensus 24 ~~~GDiVv~~ 33 (122)
+.+||+|++.
T Consensus 70 I~~GD~VlVe 79 (143)
T 1d7q_A 70 INTSDIILVG 79 (143)
T ss_dssp CCTTCEEEEE
T ss_pred ecCCCEEEEe
Confidence 4455555554
No 20
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=40.29 E-value=85 Score=21.34 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=45.5
Q ss_pred CCCCCcEEEEEcCCCCCceeEEEEEEc------CCCEEEEec------C--CCCCCCCceEEeeCCeEEEeeCCCCCCCC
Q 033291 23 KVCPGDVVLVRSPVVPRRIVTKRVIGM------EGDRVSYVA------D--PKSSDKFETVVVPQGHVWIEGDNIYESND 88 (122)
Q Consensus 23 ~~~~GDiVv~~~p~~~~~~~iKRV~a~------pGd~v~~~~------~--~~~~~~~~~~~vp~~~~~v~gdn~~~S~D 88 (122)
.++.||.|+++...+ .+.+|.||..+ +.+...... . +..........+.+.|+|.- |+++ .|
T Consensus 38 ~i~vGd~VLI~~~D~-~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~-d~~~--~d 113 (163)
T 4dov_A 38 HIKVGQFVLIQGEDN-KKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWY-DCSD--WD 113 (163)
T ss_dssp EEETTCEEEECCSSS-SCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEE-CCSC--SC
T ss_pred EEeeCCEEEEeCCcc-cCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCCCCCeEEEe-cCCC--Cc
Confidence 578999999987644 67799999887 223322111 0 11111122333445666664 5541 11
Q ss_pred CCceecccCCCeeEEEEEEEe
Q 033291 89 SRKFGAVPYGLIEGRVFLRIW 109 (122)
Q Consensus 89 SR~~G~V~~~~I~Gkv~~~~~ 109 (122)
--|+.+.|+|++.....
T Consensus 114 ----~~I~aeTIi~~c~V~~~ 130 (163)
T 4dov_A 114 ----NKINVETIIGPVQVVAL 130 (163)
T ss_dssp ----CEEEGGGEEEEEEEEEC
T ss_pred ----ccccHHHeeeceEEEEc
Confidence 24889999999876544
No 21
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=38.48 E-value=1.2e+02 Score=25.00 Aligned_cols=39 Identities=10% Similarity=-0.014 Sum_probs=29.6
Q ss_pred CCCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecCC
Q 033291 22 NKVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVADP 60 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~~ 60 (122)
..|+.||+|+|.......-=.|.=|+.+.+++|.+..+.
T Consensus 110 ~~P~~GdllV~~~~~~~p~GHVAVV~~V~~~~v~i~EQN 148 (652)
T 2vob_A 110 TKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQN 148 (652)
T ss_dssp SCCCSSEEEEECCCSSCTTCEEEEEEEECSSEEEEECSS
T ss_pred CCCCCceEEEEcCCCCCCCCcEEEEEEecCCEEEEEEec
Confidence 489999999999743323346777888889999987653
No 22
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=37.45 E-value=28 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.497 Sum_probs=19.8
Q ss_pred CCCCCCcEEEEEcCCC---CCceeEEEEEEc
Q 033291 22 NKVCPGDVVLVRSPVV---PRRIVTKRVIGM 49 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~~---~~~~~iKRV~a~ 49 (122)
+.++.||.++|.++.. .++...+.|+|+
T Consensus 33 r~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi 63 (145)
T 2hd9_A 33 SRVKPGDKLVIYVRQEKDKEGNLLEPKIVGI 63 (145)
T ss_dssp TTCCTTCEEEEEECCEECTTCCEECCEEEEE
T ss_pred HhCCCCCEEEEEEccccccCCCCCCceEEEE
Confidence 5899999999998732 233355667765
No 23
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=37.21 E-value=25 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=23.0
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYG 98 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~ 98 (122)
..+...+|.+.++.++. +-.-+|-||||+++
T Consensus 75 ~~i~FddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 75 SYIRFDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CEECCSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CEEEeCCceEEEECCCC-CEeeeEEEccchHH
Confidence 34555667777776664 78899999999975
No 24
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=37.07 E-value=1e+02 Score=21.41 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=26.8
Q ss_pred CCCCCCcEEEEEcC-CCCCceeEEEEEEcCCCEEEEecC
Q 033291 22 NKVCPGDVVLVRSP-VVPRRIVTKRVIGMEGDRVSYVAD 59 (122)
Q Consensus 22 ~~~~~GDiVv~~~p-~~~~~~~iKRV~a~pGd~v~~~~~ 59 (122)
..|+.||+++|... ....-=.|.=|..+-+++|.+.++
T Consensus 110 ~~P~~Gdl~V~~~g~~~~~yGHVAvV~~V~~~~i~i~EQ 148 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQ 148 (197)
T ss_dssp SCCCTTCEEEECSCGGGTTTCEEEEEEEECSSEEEEECS
T ss_pred CCCCCCeEEEECCCCcCCCCccEEEEEEEcCCeEEEEec
Confidence 58999999999752 111223566677777889998765
No 25
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=36.95 E-value=22 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGL 99 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~ 99 (122)
..+...+|.+.++.++..+..-+|-||||+++.
T Consensus 75 ~~i~FddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 75 SVIRFDGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp CEEEESSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred cEEEcCCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 456666777878877734788899999999863
No 26
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.97 E-value=25 Score=22.81 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=22.5
Q ss_pred eEEeeCCeEEEeeCCCCCCCCCCceecccCCC
Q 033291 68 TVVVPQGHVWIEGDNIYESNDSRKFGAVPYGL 99 (122)
Q Consensus 68 ~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~ 99 (122)
.+...+|.+.++.++- +-.-+|-||||+++.
T Consensus 76 ~i~FddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 76 IIRYDDNAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp EECCSSCEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred EEEeCCceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 3445566676666554 788999999999864
No 27
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=34.03 E-value=86 Score=21.14 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecC
Q 033291 23 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 59 (122)
Q Consensus 23 ~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~ 59 (122)
.++.|.++.+..+. +..+.-+|+.+.+|+|.+.-|
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~N 146 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDFN 146 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEECS
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeCC
Confidence 58889999998763 456778899999999999865
No 28
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=31.67 E-value=32 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=16.8
Q ss_pred CCCCCCcEEEEEcCCC--CCceeEEEEEEc
Q 033291 22 NKVCPGDVVLVRSPVV--PRRIVTKRVIGM 49 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~~--~~~~~iKRV~a~ 49 (122)
+..+.||.++|. |.. ....-.+.|+|+
T Consensus 36 r~Mk~GD~~~fY-~~~~~hs~~~~~~ivGi 64 (147)
T 2p5d_A 36 NKVKVGDKLIIY-EIQRSGKDYKPPYIRGV 64 (147)
T ss_dssp TTCCTTCEEEEE-ECCBCSTTCBCCEEEEE
T ss_pred HhCCCCCEEEEE-EecccCCCCCCCEEEEE
Confidence 579999999999 321 122234566664
No 29
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=31.20 E-value=1.1e+02 Score=19.93 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecC
Q 033291 23 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 59 (122)
Q Consensus 23 ~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~ 59 (122)
.++.|+.+.+..+. +..+.-+|..+.+++|.+.-|
T Consensus 93 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~v~vD~N 127 (151)
T 2kr7_A 93 ELEKGMSVFGQTED--NQTIQAIIKDFSATHVMVDYN 127 (151)
T ss_dssp CCCTTCEEEEEETT--TEEEEEEEEEECSSEEEEEEC
T ss_pred CCccCCEEEEECCC--CCEEEEEEEEECCCEEEEECC
Confidence 68899999998764 456788899999999999865
No 30
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=31.14 E-value=70 Score=20.41 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=12.7
Q ss_pred CCCCCCcEEEEEcCCC
Q 033291 22 NKVCPGDVVLVRSPVV 37 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~~ 37 (122)
..++.||+|+|..-..
T Consensus 90 ~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNG 105 (130)
T ss_dssp TTCCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 5789999999987543
No 31
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=29.90 E-value=34 Score=22.49 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=23.6
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGL 99 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~ 99 (122)
..+...+|.+.++.++- +-.-+|-||||+++.
T Consensus 86 ~~i~FddNA~Vlin~~g-~p~GTrI~GPVarEl 117 (132)
T 1vq8_K 86 TRVKFEDNAAVIVDENE-DPRGTELKGPIAREV 117 (132)
T ss_dssp CEEEESSCEEEEECTTS-CBSSSCBCSEECHHH
T ss_pred cEEEeCCceEEEECCCC-CEeEEEEEcCcCHHH
Confidence 34556667777776654 788999999999753
No 32
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=29.68 E-value=49 Score=20.45 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=36.2
Q ss_pred cCCCEEEEecCCCCCCCCceEEeeCCeEEEeeCCCCCCCCCCceecccCCCeeEEEEEEEeC
Q 033291 49 MEGDRVSYVADPKSSDKFETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVFLRIWP 110 (122)
Q Consensus 49 ~pGd~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~I~Gkv~~~~~p 110 (122)
.+||.+.+... -.....++.+.|+.|...+.----+++=+-=.|+.+.++..+.+..-|
T Consensus 15 ~~Gd~v~V~k~---F~Dy~Gft~~~GE~w~fa~~~flpYe~G~tLfis~dk~~~~I~L~~~~ 73 (93)
T 3g1j_A 15 KAGQCYKVVRS---FRDYRNINYERGDVMRFLGSNFVPYESGLSLFFDKNGSERQIMLCVRP 73 (93)
T ss_dssp ETTCEEEECSC---EECTTCCEECTTCEEEEEEEEEETTTTEEEEEEEETTEEEEEEEECST
T ss_pred cCCcEEEEeee---eeccCCcEeCCCCEEEEeeccCccccCceEEEEecCCcEEEEEEecCc
Confidence 36777776521 122456678888888777664344455444567888887777665443
No 33
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=29.53 E-value=36 Score=22.56 Aligned_cols=32 Identities=16% Similarity=-0.044 Sum_probs=23.4
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGL 99 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~ 99 (122)
..+..-+|.+.++.++- +-.-+|-||||+++.
T Consensus 91 ~~i~FddNA~Vlin~~g-~p~GTrI~GPVarEl 122 (137)
T 3u5e_V 91 VFLYFEDNAGVIANPKG-EMKGSAITGPVGKEC 122 (137)
T ss_dssp CEEEESSCEEEEBCTTC-CBSSSCBCSCBCHHH
T ss_pred eEEEcCCceEEEECCCC-CEeeeEEEcchhHHH
Confidence 34556667776776654 788999999998753
No 34
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=28.98 E-value=58 Score=20.56 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCCCCCCcEEEEEcCCCCCceeEEEEEE
Q 033291 21 FNKVCPGDVVLVRSPVVPRRIVTKRVIG 48 (122)
Q Consensus 21 ~~~~~~GDiVv~~~p~~~~~~~iKRV~a 48 (122)
++.++.||.++|. +..+.-+|..
T Consensus 31 ~~~ikvGD~I~f~-----~~~l~~~V~~ 53 (109)
T 2z0t_A 31 RRQIKPGDIIIFE-----GGKLKVKVKG 53 (109)
T ss_dssp GGGCCTTCEEEEG-----GGTEEEEEEE
T ss_pred hhcCCCCCEEEEC-----CCEEEEEEEE
Confidence 4578999999992 3456666655
No 35
>1vzm_A Osteocalcin; calcium-binding protein, bone GLA protein, BGP, hydroxyapatite, gamma carboxyl glutamic acid, vitamin K, bone, mineralization; HET: CGU; 1.4A {Argyrosomus regius}
Probab=27.31 E-value=9.9 Score=20.46 Aligned_cols=7 Identities=29% Similarity=0.895 Sum_probs=4.7
Q ss_pred Cceeccc
Q 033291 90 RKFGAVP 96 (122)
Q Consensus 90 R~~G~V~ 96 (122)
||||+||
T Consensus 38 ryfG~~~ 44 (45)
T 1vzm_A 38 AFYGPIP 44 (45)
T ss_dssp HHHCSCC
T ss_pred HHcCCCC
Confidence 5677776
No 36
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=26.87 E-value=87 Score=21.58 Aligned_cols=83 Identities=12% Similarity=0.045 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEEcCC--CCCceeEEEEEEcCC--CEEEEecCCCCCCCCceEEeeCCeEEEeeCCC---------CCCCC
Q 033291 22 NKVCPGDVVLVRSPV--VPRRIVTKRVIGMEG--DRVSYVADPKSSDKFETVVVPQGHVWIEGDNI---------YESND 88 (122)
Q Consensus 22 ~~~~~GDiVv~~~p~--~~~~~~iKRV~a~pG--d~v~~~~~~~~~~~~~~~~vp~~~~~v~gdn~---------~~S~D 88 (122)
..++.||-|+++... ..++.++.+|+...| .+.++.+-.. +....++++..++..+-.-. .....
T Consensus 43 ~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d~--eg~~~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G 120 (180)
T 3mea_A 43 YVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDE--EGKERHTLSRRRVIPLPQWKANPETDPEALFQKE 120 (180)
T ss_dssp CCCCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECCT--TCCEEEEEEGGGEEECCSBBCCTTTCGGGSCCTT
T ss_pred cccCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCCC--CCceeEEeCHHHEEECCCcCCCcccCccccCCCC
Confidence 368899999999742 235678899988655 5566654322 12346888888888875321 12333
Q ss_pred CCceecccCCCeeEEEEE
Q 033291 89 SRKFGAVPYGLIEGRVFL 106 (122)
Q Consensus 89 SR~~G~V~~~~I~Gkv~~ 106 (122)
++-...-|.....-+|..
T Consensus 121 ~~VLAlYP~TT~FY~A~V 138 (180)
T 3mea_A 121 QLVLALYPQTTCFYRALI 138 (180)
T ss_dssp CEEEEECTTSSEEEEEEE
T ss_pred CEEEEeCCCCceeeEEEE
Confidence 444455555555555544
No 37
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.98 E-value=60 Score=20.61 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEEEcCCCCCceeEEEEEE
Q 033291 21 FNKVCPGDVVLVRSPVVPRRIVTKRVIG 48 (122)
Q Consensus 21 ~~~~~~GDiVv~~~p~~~~~~~iKRV~a 48 (122)
++.++.||.++|+. .+.-+|..
T Consensus 32 ~~~i~vGD~I~f~~------~l~~~V~~ 53 (113)
T 1xne_A 32 LKDIKRGDKIIFND------LIPAEVVE 53 (113)
T ss_dssp TTTCCTTCEEEETT------TEEEEEEE
T ss_pred hhccCCCCEEEEcc------ceEEEEEE
Confidence 46789999999974 35555544
No 38
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=25.86 E-value=1.4e+02 Score=19.63 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEecC
Q 033291 23 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVAD 59 (122)
Q Consensus 23 ~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~~ 59 (122)
.++.|+.+.+..+. +..+.-+|+.+.+++|.+.-|
T Consensus 84 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~v~vD~N 118 (158)
T 3cgm_A 84 EVVPGAQFYAQDME--GNPMPLTVVAVEGEEVTVDFN 118 (158)
T ss_dssp CCCTTCEEEEEETT--TEEEEEEEEEEETTEEEEECS
T ss_pred CCccCCEEEEECCC--CCEEEEEEEEECCCEEEEeCC
Confidence 58899999998764 466778899999999999865
No 39
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=25.05 E-value=41 Score=19.41 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=15.8
Q ss_pred CCCCcEEEEEcCCCCCceeEEEEEEcCCC
Q 033291 24 VCPGDVVLVRSPVVPRRIVTKRVIGMEGD 52 (122)
Q Consensus 24 ~~~GDiVv~~~p~~~~~~~iKRV~a~pGd 52 (122)
.+.||-|+.+. ..+.++=.+|.++-|+
T Consensus 7 ~~vGd~vmArW--~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 7 FQINEQVLACW--SDCRFYPAKVTAVNKD 33 (67)
T ss_dssp CCTTCEEEEEC--TTSCEEEEEEEEECTT
T ss_pred cccCCEEEEEc--CCCCEeeEEEEEECCC
Confidence 44555555555 2245666777777765
No 40
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.01 E-value=31 Score=22.98 Aligned_cols=32 Identities=13% Similarity=-0.038 Sum_probs=23.2
Q ss_pred ceEEeeCCeEEEeeCCCCCCCCCCceecccCCC
Q 033291 67 ETVVVPQGHVWIEGDNIYESNDSRKFGAVPYGL 99 (122)
Q Consensus 67 ~~~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~ 99 (122)
..+...+|.+.++.++- +..-+|-||||+++.
T Consensus 95 s~i~FddNA~VLin~~g-~p~GTRI~GPVarEl 126 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEG-VPRGTEIRGPVAREA 126 (141)
T ss_dssp CEECCSSCEEEEBCTTS-CBCSSCCCSEECHHH
T ss_pred cEEEcCCcEEEEECCCC-CEeeeEEEccccHHH
Confidence 34555667776776554 788999999999763
No 41
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=23.38 E-value=1.4e+02 Score=18.44 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=24.8
Q ss_pred cCCCCCEEEEEeccCCCCCCCCCcEEEEEcCCCCCceeEEEEEEcC
Q 033291 5 INLTGDLVLAERISTRFNKVCPGDVVLVRSPVVPRRIVTKRVIGME 50 (122)
Q Consensus 5 l~~~Gd~vlv~~~~~~~~~~~~GDiVv~~~p~~~~~~~iKRV~a~p 50 (122)
|.|-+|+|+|.+... .+-..|-|++=.. .........|+|+.
T Consensus 5 i~PL~DRVlVk~~e~--e~kT~gGI~LP~s--akeKp~~G~VvAVG 46 (99)
T 1p3h_A 5 IKPLEDKILVQANEA--ETTTASGLVIPDT--AKEKPQEGTVVAVG 46 (99)
T ss_dssp EEECTTEEEEEECCC--CCBCTTSCBCCCS--SCCSEEEEEEEEEC
T ss_pred eEEeCCEEEEEEccc--cccccceEEeCcc--cccCCceEEEEEEC
Confidence 445689999998642 3344566555221 22455666776663
No 42
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.31 E-value=57 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=21.8
Q ss_pred CeEEEeeCCC----CCCCCCCceecccCCCeeEEEEE
Q 033291 74 GHVWIEGDNI----YESNDSRKFGAVPYGLIEGRVFL 106 (122)
Q Consensus 74 ~~~~v~gdn~----~~S~DSR~~G~V~~~~I~Gkv~~ 106 (122)
-|||.|..+. .+..++|+|=.||.+.|+...-.
T Consensus 26 RHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~ 62 (125)
T 2coa_A 26 RHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESA 62 (125)
T ss_dssp EEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEES
T ss_pred ceeeEecCCeEEEEecCCCCceeeeeehhHeeccccc
Confidence 4677765553 23457888888888888776543
No 43
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa}
Probab=20.94 E-value=18 Score=24.29 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=21.6
Q ss_pred EEeeCCeEEEeeCCCCCCCCCCceecccCCCeeEEEE
Q 033291 69 VVVPQGHVWIEGDNIYESNDSRKFGAVPYGLIEGRVF 105 (122)
Q Consensus 69 ~~vp~~~~~v~gdn~~~S~DSR~~G~V~~~~I~Gkv~ 105 (122)
--||+|+|||.+.-. .+..|. .|+.++.-++-|-+
T Consensus 102 ~~Lp~G~Yyl~a~v~-w~~~~~-~~~~~qgg~lmk~V 136 (150)
T 3qec_A 102 DHIPNGTYYISSELT-WSAQSD-GKTITEGGTVTKLV 136 (150)
T ss_dssp EEECSEEEEEEEEEE-EEEESS-SSEEEEEEEEEEEE
T ss_pred CCCCCccEEEEEEEE-eccCCC-CCcccccceEEEEE
Confidence 359999999998665 332222 55555555554443
No 44
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=96 Score=20.25 Aligned_cols=30 Identities=17% Similarity=0.296 Sum_probs=17.8
Q ss_pred CeEEEeeCCC----CCCCCCCceecccCCCeeEE
Q 033291 74 GHVWIEGDNI----YESNDSRKFGAVPYGLIEGR 103 (122)
Q Consensus 74 ~~~~v~gdn~----~~S~DSR~~G~V~~~~I~Gk 103 (122)
-|||.|..+. .+-.++|||=.||.+.|+..
T Consensus 26 RHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v 59 (129)
T 2d9z_A 26 RHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRI 59 (129)
T ss_dssp EEEEEEESSCEEEESCSSCCSCCCEECTTTCCEE
T ss_pred ceeeEecCCeEEEEecCCCCceeceeeHHHhccc
Confidence 3566665443 12346777777777777554
No 45
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=20.64 E-value=42 Score=18.81 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=8.6
Q ss_pred EcCCCEEEEe
Q 033291 48 GMEGDRVSYV 57 (122)
Q Consensus 48 a~pGd~v~~~ 57 (122)
|+|||+|.++
T Consensus 44 alPGE~V~v~ 53 (68)
T 1yez_A 44 TKVGDEVRIK 53 (68)
T ss_dssp CCTTCEEEEE
T ss_pred CCCCCEEEEE
Confidence 6899999875
No 46
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=20.61 E-value=53 Score=21.08 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=12.0
Q ss_pred CCCCCCcEEEEEcC
Q 033291 22 NKVCPGDVVLVRSP 35 (122)
Q Consensus 22 ~~~~~GDiVv~~~p 35 (122)
.++++||+|.|...
T Consensus 66 ~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 66 SNLRTGDLVLFRAG 79 (136)
T ss_dssp TTCCTTEEEEEECS
T ss_pred HhCCCCCEEEECCC
Confidence 57999999999864
No 47
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=20.61 E-value=44 Score=21.76 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=11.9
Q ss_pred CCCCCCcEEEEEcC
Q 033291 22 NKVCPGDVVLVRSP 35 (122)
Q Consensus 22 ~~~~~GDiVv~~~p 35 (122)
.++++||+|.|...
T Consensus 66 ~~l~pGDLvFf~~~ 79 (135)
T 2k1g_A 66 SNLRTGDLVLFRAG 79 (135)
T ss_dssp GGCCTTEEEEEEET
T ss_pred HHccCCcEEEECCC
Confidence 57999999999853
No 48
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=20.56 E-value=96 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=15.6
Q ss_pred CCCEEEEEeccCCCCCCCCCcEEEEEcC
Q 033291 8 TGDLVLAERISTRFNKVCPGDVVLVRSP 35 (122)
Q Consensus 8 ~Gd~vlv~~~~~~~~~~~~GDiVv~~~p 35 (122)
.||.+.-..+. .+++.||+++|..-
T Consensus 297 s~D~l~~~~~~---~~l~~GD~l~~~~~ 321 (365)
T 3mt1_A 297 AGDVFGEFRFA---EELKVGDRISFQDA 321 (365)
T ss_dssp SSCEEEEEEES---SCCCTTCEEEESSC
T ss_pred ccCEEcccccC---CCCCCCCEEEEecc
Confidence 57777533332 35778888888753
No 49
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}
Probab=20.46 E-value=1.5e+02 Score=21.09 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCCceeEEEEEEcCCCEEEEec
Q 033291 23 KVCPGDVVLVRSPVVPRRIVTKRVIGMEGDRVSYVA 58 (122)
Q Consensus 23 ~~~~GDiVv~~~p~~~~~~~iKRV~a~pGd~v~~~~ 58 (122)
.++.|+.|..-+.+........+++++-.++|.+..
T Consensus 253 g~~~G~~V~v~p~d~g~~~~~g~l~~~~~~~~~~~~ 288 (310)
T 3ic8_A 253 GFKAGDKVAIAAVDYGVEAVEGELMFTGREELILRR 288 (310)
T ss_dssp CCCTTCEEEEEESSCGGGCEEEEEEEECSSCEEEEE
T ss_pred cCCCCCEEEEeeccCCCCCCceEEEEecCcEEEEEE
Confidence 567888887776554445677888888888888764
No 50
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=20.19 E-value=55 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=11.9
Q ss_pred CCCCCCCcEEEEEcC
Q 033291 21 FNKVCPGDVVLVRSP 35 (122)
Q Consensus 21 ~~~~~~GDiVv~~~p 35 (122)
.++|+.||+|.+...
T Consensus 5 ~~ep~pGDlI~~~r~ 19 (125)
T 2lkt_A 5 HQEPKPGDLIEIFRL 19 (125)
T ss_dssp SCCCCTTCEEEEECS
T ss_pred CCCCCCCCEEEEeCC
Confidence 358999999988754
Done!