BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033293
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102
K ++ GL+ P + AIMGP+GSGKSTL LAGR V G+V+ K
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGK 84
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102
K ++ GL+ P + AIMGP+GSGKSTL LAGR V G+V+ K
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGK 65
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 39 VEAKNLRNGAKKK-LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90
+EA +L +++ LIN ++ + ++AI+GP+G+GKSTLL L G LS +
Sbjct: 12 LEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS 64
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
Query: 49 KKKLINGLTGYAQP------DRIMAIMGPSGSGKSTLLDAL 83
KK + G + +P DR+ AI+GP+GSGKS ++DA+
Sbjct: 4 KKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 64 RIMAIMGPSGSGKSTLLDALAG 85
MA++GPSGSGKSTLL +AG
Sbjct: 30 EFMALLGPSGSGKSTLLYTIAG 51
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 19 DRENDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKST 78
+ E D+ AV V E++ + KK ++ +T + +P + +A++GP+GSGK+T
Sbjct: 337 EEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
Query: 79 LLDAL 83
+++ L
Sbjct: 397 IVNLL 401
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
++++ ++ AQP+ I+A GPSG GKST+ L
Sbjct: 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
>pdb|4EDH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4EDH|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Adp,Tmp And
Mg.
pdb|4ESH|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With
Deoxythymidine.
pdb|4GMD|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|C Chain C, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
pdb|4GMD|D Chain D, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Azt
Monophosphate
Length = 213
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
N +TG + + GP G+GKST D LA RL + I VQL R+ GGT
Sbjct: 2 NAMTGL-----FVTLEGPEGAGKSTNRDYLAERLRERGI---EVQLTREPGGT 46
>pdb|4E5U|A Chain A, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate.
pdb|4E5U|B Chain B, The Crystal Structure Of Thymidylate Kinase From
Pseudomonas Aeruginosa Pao1 In Complex With Thymidine
Monophosphate
Length = 213
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ + GP G+GKST D LA RL + I VQL R+ GGT
Sbjct: 8 FVTLEGPEGAGKSTNRDYLAERLRERGI---EVQLTREPGGT 46
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 38 KVEAKNLRNGAKKK----LINGLTGYAQPDRIMAIMGPSGSGKST---LLDALAGRLSKN 90
KV KN+R ++ ++ GL+ +P + +A++GPSG GKST LL+ L
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135
Query: 91 VILTGS 96
+ + GS
Sbjct: 1136 IFIDGS 1141
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111
++ G+ + +A++G SG GKST++ L L +L G + ++ G + RDI
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLL---LRYYDVLKGKITID----GVDVRDI 485
>pdb|3UXM|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|C Chain C, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UXM|D Chain D, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 211
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ + GP G+GKST D LA RL + I VQL R+ GGT
Sbjct: 4 FVTLEGPEGAGKSTNRDYLAERLRERGI---EVQLTREPGGT 42
>pdb|3UWO|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWO|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 220
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ + GP G+GKST D LA RL + I VQL R+ GGT
Sbjct: 13 FVTLEGPEGAGKSTNRDYLAERLRERGI---EVQLTREPGGT 51
>pdb|3UWK|A Chain A, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
pdb|3UWK|B Chain B, Structure Guided Development Of Novel Thymidine Mimetics
Targeting Pseudomonas Aeruginosa Thymidylate Kinase:
From Hit To Lead Generation
Length = 232
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ + GP G+GKST D LA RL + I VQL R+ GGT
Sbjct: 25 FVTLEGPEGAGKSTNRDYLAERLRERGI---EVQLTREPGGT 63
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 43 NLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99
L++ A+ + L+G + I+ ++GP+G+GKSTLL +AG S GS+Q
Sbjct: 6 QLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQF 58
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 43 NLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99
L++ A+ + L+G + I+ ++GP+G+GKSTLL +AG S GS+Q
Sbjct: 6 QLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK----GSIQF 58
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL--SKNVILTG 95
+ I+GP+GSGK+TLL A++G L S N+ + G
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFING 64
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
K K ++G++ + +A++GPSG GK+T L LAG
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 46 NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTL 79
N +++ GLT P ++ A++GP+GSGKST+
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 46 NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTL 79
N +++ GLT P ++ A++GP+GSGKST+
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTL 79
+++ GLT P ++ A++GP+GSGKST+
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 43 NLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99
L++ A+ + L+G + I+ ++GP+G+GKSTLL AG S GS+Q
Sbjct: 6 QLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK----GSIQF 58
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 43 NLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99
L++ A+ + L+G + I+ ++GP+G+GKSTLL AG S GS+Q
Sbjct: 6 QLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK----GSIQF 58
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL 87
+A++GP+G+GKSTL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 64 RIMAIMGPSGSGKSTLLDALA 84
R I GP+G GKSTL+ A+A
Sbjct: 462 RRYGICGPNGCGKSTLMRAIA 482
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.0 bits (71), Expect = 0.084, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90
H+ +E N R A + + L+ QP ++AI+G +GKS L++ LAG+ K
Sbjct: 6 HMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK-KKG 64
Query: 91 VILTGSVQLNRK 102
L +VQ + K
Sbjct: 65 FSLGSTVQSHTK 76
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL 87
+A++GP+G+GKSTL++ L G L
Sbjct: 696 IAVIGPNGAGKSTLINVLTGEL 717
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84
K L+N + R I GP+G GKSTL A+A
Sbjct: 442 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA 476
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 32.0 bits (71), Expect = 0.095, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL 87
+A++GP+G+GKSTL++ L G L
Sbjct: 702 IAVIGPNGAGKSTLINVLTGEL 723
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84
K L+N + R I GP+G GKSTL A+A
Sbjct: 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA 482
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative
Metal-Chelate Type Abc Transporter
Length = 253
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 65 IMAIMGPSGSGKSTLLDALAG 85
I+A++G +G GKSTLLD L G
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLG 53
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 41 AKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
+K+ +N ++N ++ P I+ I+G SG GK+TLL LAG
Sbjct: 11 SKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSK 89
++IMGPSGSGKST+L+ + G L K
Sbjct: 33 FVSIMGPSGSGKSTMLN-IIGCLDK 56
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 IXDSHIAEITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIAEITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSK 89
++IMGPSGSGKST+L+ + G L K
Sbjct: 33 FVSIMGPSGSGKSTMLN-IIGCLDK 56
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 52 LINGLTGYAQPDRIMAIMGPSGSGKSTL 79
++ GLT +P + A++GP+GSGKST+
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTV 59
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 IXDSHIAXITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNV 91
++ I+GP+G+GKST + LAG+L N+
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNL 75
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG 85
G + ++ I+GP+G GK+T + LAG
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAG 334
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIAXITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL---SKNVILTGSVQLNRKKGGTNRRDI 111
+ + G +GSGKSTLL +AG + S +V+ G RKKG RR+I
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG----ERKKGYEIRRNI 80
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHISXITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 30.8 bits (68), Expect = 0.20, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHISXITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 66 MAIMGPSGSGKSTLLDALAGRL---SKNVILTGSVQLNRKKGGTNRRDI 111
+ + G +GSGKSTLL +AG + S +V+ G RKKG RR+I
Sbjct: 38 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG----ERKKGYEIRRNI 82
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHISTITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHISTITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
+++ G+ + + ++ ++GPSGSGKST L L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 49
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90
H+ +E N R A + + L+ QP ++AI+G +GKS L++ LAG+ K
Sbjct: 17 HMTGPMCLIENTNGRLMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGK-KKG 75
Query: 91 VILTGSVQLNRK 102
L +VQ + K
Sbjct: 76 FSLGSTVQSHTK 87
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 38 KVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTG 95
K+E ++L G K ++ +T + ++ GP+G GK+TLL ++ L K I+
Sbjct: 10 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69
Query: 96 SVQLNRKKG 104
V + + KG
Sbjct: 70 GVPITKVKG 78
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90
K ++G++ + I+GP+GSGKSTL++ + G L +
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87
K ++G++ + I+GP+GSGKSTL++ + G L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL 57
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 355 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGVHS 411
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 412 ITDSHISXITDTIILLQYVEI---RGEMSR----AINVFKMRG 447
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLL-------DALAGRLSKNVILTGSVQLNRKKG 104
+++G+ +P ++A++G +GSGKSTL+ D GR+ + + +V+L +G
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNV 91
++ I+GP+G+GK+T + LAG+L N+
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNL 145
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG 85
G + ++ I+GP+G GK+T + LAG
Sbjct: 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNV 91
++ I+GP+G+GK+T + LAG+L N+
Sbjct: 105 VVGIVGPNGTGKTTAVKILAGQLIPNL 131
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG 85
G + ++ I+GP+G GK+T + LAG
Sbjct: 363 GEIRKGEVIGIVGPNGIGKTTFVKMLAG 390
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 IADSHISAITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
+++ G+ + + ++ ++GPSGSGKST L L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL 70
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIDXITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIEEITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIEEITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKN 90
+ I+GP+GSGKSTL++ + G L +
Sbjct: 35 VTLIIGPNGSGKSTLINVITGFLKAD 60
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSK--NVILTGS 96
+I ++G +GSGK+TLL LAG L+ + L GS
Sbjct: 38 KIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGS 72
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.4 bits (67), Expect = 0.28, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIDTITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
+ G++ + ++ ++GPSGSGK+T+L +AG
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK---NVILTGSV 97
+NG+T ++A++G G GKS+LL AL + K +V + GSV
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV 68
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 32 LVWEEVKVEAKNLRNGAK--KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
L +++ ++E +N+ ++ + ++ P + +A++GPSG+GKST+L L
Sbjct: 47 LRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 ITDSHIXAITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGS---GKST 78
ND PA +A + + A+ + N A ++ + G+TGYA+ + I + + G +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHS 424
Query: 79 LLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLIKKKG 121
+ D+ ++ +IL V++ +G +R +IN+ K +G
Sbjct: 425 IADSHIXAITDTIILLQYVEI---RGEMSR----AINVFKMRG 460
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 7 TESIRHRHA-YSGDRENDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRI 65
TE+++ R A + D +ND+ ++ +L+ ++N G I
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSY----------PSLKKTQGDFVLNVEEGEFSDSEI 380
Query: 66 MAIMGPSGSGKSTLLDALAGRLSKN 90
+ +MG +G+GK+TL+ LAG L +
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPD 405
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNV 91
+P +++ ++G +G GKST L LAG+ N+
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 76 KSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116
KS L DA+ S+NV + G V LN K G D+ ++ +
Sbjct: 78 KSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEV 118
>pdb|1E3X|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.92a
pdb|1E3Z|A Chain A, Acarbose Complex Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.93a
pdb|1E40|A Chain A, TrisMALTOTRIOSE COMPLEX OF CHIMAERIC AMYLASE FROM B.
Amyloliquefaciens And B. Licheniformis At 2.2a
pdb|1E43|A Chain A, Native Structure Of Chimaeric Amylase From B.
Amyloliquefaciens And B. Licheniformis At 1.7a
Length = 483
Score = 29.6 bits (65), Expect = 0.41, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 76 KSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116
KS L DA+ S+NV + G V LN K G D+ ++ +
Sbjct: 78 KSELQDAIGSLHSRNVQVYGDVVLNHKAGADATEDVTAVEV 118
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 39 VEAKNLRNG-AKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80
V K+LR KK+++ G++ + I ++GP+G+GK+T L
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
>pdb|1W1W|A Chain A, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|B Chain B, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|C Chain C, Sc Smc1hd:scc1-c Complex, Atpgs
pdb|1W1W|D Chain D, Sc Smc1hd:scc1-c Complex, Atpgs
Length = 430
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRL 87
+I+GP+GSGKS ++DA++ L
Sbjct: 28 FTSIIGPNGSGKSNMMDAISFVL 50
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGGTNRRD--IVSINLIK 118
R + I GPSG+GKSTLL L + S + G N +D VS++ K
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK 60
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGGTNRRD--IVSINLIK 118
R + I GPSG+GKSTLL L + S + G N +D VS++ K
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK 59
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 53 INGLTGYAQP----DRIMAIMGPSGSGKSTLLDALAGRLSKNV 91
+NG + P + I+ ++G +G GK+T+L LAG + N
Sbjct: 11 VNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF 53
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90
G A+ I+ I+GP+G GK+T L G ++ +
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKN-VILTGSVQLNRKKGGTNRRD 110
+ AI+G S SGKST+++A+ L N IL+G V K T R +
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREE 82
>pdb|2CMK|A Chain A, Cytidine Monophosphate Kinase In Complex With
Cytidine-Di- Phosphate
pdb|1KDO|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDO|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With Cytidine Monophosphate
pdb|1KDP|A Chain A, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDP|B Chain B, Cytidine Monophosphate Kinase From E. Coli In Complex
With 2'-Deoxy-Cytidine Monophosphate
pdb|1KDR|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDR|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With Ara-Cytidine Monophosphate
pdb|1KDT|A Chain A, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
pdb|1KDT|B Chain B, Cytidine Monophosphate Kinase From E.Coli In Complex
With 2',3'-Dideoxy-Cytidine Monophosphate
Length = 227
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++ I GPSG+GK TL A+A L +++ +G++
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|2FEM|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli
pdb|2FEO|A Chain A, Mutant R188m Of The Cytidine Monophosphate Kinase From
E. Coli Complexed With Dcmp
Length = 227
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++ I GPSG+GK TL A+A L +++ +G++
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 59 YAQPDRIMAIM---GPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
Y Q + + A + GP GSGK+T+++ + RL K+ V + R+ GG
Sbjct: 19 YFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDY----DVIMTREPGGV 65
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 66 MAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIV 112
I+GPSG+GK+T + +AG +V TG + + + +N + IV
Sbjct: 34 FGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDRLVASNGKLIV 77
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGGTNRRD--IVSINLIK 118
R + I GPSG+GKSTLL L + S + G N +D VS++ K
Sbjct: 18 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFK 75
>pdb|1CKE|A Chain A, Cmp Kinase From Escherichia Coli Free Enzyme Structure
Length = 227
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++ I GPSG+GK TL A+A L +++ +G++
Sbjct: 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 66 MAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIV 112
I+GPSG+GK+T + +AG +V TG + + + +N + IV
Sbjct: 34 FGILGPSGAGKTTFMRIIAGL---DVPSTGELYFDDRLVASNGKLIV 77
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++ + GPSG+GK TL ALA L+ ++ +G++
Sbjct: 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101
++++AI+GP+ GK+ LA RL+ VI S Q+ R
Sbjct: 3 EKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYR 41
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ GP GSGK+T+++ + RL K+ V + R+ GG
Sbjct: 4 FITFEGPEGSGKTTVINEVYHRLVKDY----DVIMTREPGGV 41
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 36 EVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
EVK+E R G +N L + + ++GPSG GK+T L +AG
Sbjct: 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 36 EVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
EVK+E R G +N L + + ++GPSG GK+T L +AG
Sbjct: 12 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 60
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 39 VEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
+E ++L K ++ L+ + I+GP+G+GK+ L+ +AG
Sbjct: 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 65 IMAIMGPSGSGKSTLLDAL 83
+ A++GPSGSGKST+L L
Sbjct: 372 VTALVGPSGSGKSTVLSLL 390
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 65 IMAIMGPSGSGKSTLLDAL 83
+ A++GPSGSGKST+L L
Sbjct: 403 VTALVGPSGSGKSTVLSLL 421
>pdb|4A2I|V Chain V, Cryo-Electron Microscopy Structure Of The 30s Subunit In
Complex With The Yjeq Biogenesis Factor
Length = 277
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGS 96
K L LTG RI G SG GKS+LL+AL G +N ILT +
Sbjct: 152 KPLEEALTG-----RISIFAGQSGVGKSSLLNALLGL--QNEILTNT 191
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++ I GP+G GKST LA +L + + G +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
++A+ GPSG+GKS++ LA +L + + TG++
Sbjct: 6 VVAVDGPSGTGKSSVAKELARQLGASYLDTGAM 38
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106
+ GP GSGK+T+++ + RL K+ V + R+ GG
Sbjct: 24 FITFEGPEGSGKTTVINEVYHRLVKDY----DVIMTREPGGV 61
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 67 AIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN 100
++GP+G+GKS L+ +AG + + G V+LN
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPD---RGEVRLN 58
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 64 RIMAIMGPSGSGKSTLLDALAG 85
+ A+MGP+G+GKSTL LAG
Sbjct: 30 EVHALMGPNGAGKSTLGKILAG 51
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85
+L++ L G+ I + GPSG GKS++L L G
Sbjct: 158 ELVDYLEGF-----ICILAGPSGVGKSSILSRLTG 187
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+ +GPSG GKSTLL +AG
Sbjct: 32 VVFVGPSGCGKSTLLRMIAG 51
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter
(Malk) In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose
Transporter From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State
Mbp-Maltose Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+ +GPSG GKSTLL +AG
Sbjct: 32 VVFVGPSGCGKSTLLRMIAG 51
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+ +GPSG GKSTLL +AG
Sbjct: 32 VVFVGPSGCGKSTLLRMIAG 51
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
M ++GPSG GK+T L +AG
Sbjct: 32 MILLGPSGCGKTTTLRMIAG 51
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105
TG P + + + GP G+GK+ L A+A S + + L K G
Sbjct: 47 FTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG 96
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 65 IMAIMGPSGSGKSTLLDAL 83
+ A++GP+GSGKS + DA+
Sbjct: 26 VTAVVGPNGSGKSNITDAI 44
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVI 92
I + GP+G+GKS+L +A++ L N I
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGNGI 52
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105
TG P R + + GP G+GK+ L A+A + + L K G
Sbjct: 141 FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVG 190
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 61 QPDR-IMAIMGPSGSGKSTLLDALAGRLSKN 90
QP R ++A+ G GSGKSTL + LA LS
Sbjct: 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKN 90
I + GP+G+GKS+L +A++ L N
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALFGN 50
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 61 QPDRIMAIMGPSGSGKSTLLDAL 83
Q +R++ + G +GSGK+TL+ AL
Sbjct: 173 QLERVIVVAGETGSGKTTLMKAL 195
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From
Aquifex Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex
(Aq_297) From Aquifex Aeolicus Vf5
Length = 224
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
+++ G++ + ++I+G SGSGKSTLL L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSK 89
++I GPSGSGKST L+ + G L K
Sbjct: 33 FVSIXGPSGSGKSTXLN-IIGCLDK 56
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRL 87
I+AI+G +GSGKS++ +A+ L
Sbjct: 27 IVAIIGENGSGKSSIFEAVFFAL 49
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84
K + TG P R + + GP G+GKS L A+A
Sbjct: 33 KFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111
+P + + + GP G+GK+ L A+A + N I + + + K G + R I
Sbjct: 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 68 IMGPSGSGKSTLLDAL 83
I+G +GSGKS+LLDA+
Sbjct: 28 IIGQNGSGKSSLLDAI 43
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 65 IMAIMGPSGSGKSTLLDAL 83
I I+G +GSGKS+LLDA+
Sbjct: 25 INLIIGQNGSGKSSLLDAI 43
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 38 KVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVI 92
KV+ + L A +KL L G I+ + GP G GK++L ++A L + +
Sbjct: 88 KVKERILEYLAVQKLTKSLKG-----PILCLAGPPGVGKTSLAKSIAKSLGRKFV 137
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 68 IMGPSGSGKSTLLDAL 83
I+G +GSGKS+LLDA+
Sbjct: 28 IIGQNGSGKSSLLDAI 43
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 70 GPSGSGKSTLLDALAGRL 87
G SG+GKSTL ALA RL
Sbjct: 376 GLSGAGKSTLARALAARL 393
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRL--SKNVI-----LTGSVQLNRKKGGTNRRDIVS 113
++AI G +GSGK++LL + G L S+ +I ++ Q + GT + +I+S
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIS 121
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 64 RIMAIMGPSGSGKSTLLDAL 83
R + + GPSG+GKSTLL L
Sbjct: 5 RPVVLSGPSGAGKSTLLKKL 24
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 66 MAIMGPSGSGKSTLLDALAGRLSKNVILTGS---------VQLNRKKGGTNRRDIVSINL 116
+A+ GP+ +GKST+ +A LS + TG+ ++LN+ + D +++L
Sbjct: 6 IALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDL 65
Query: 117 IKKKGK 122
K K
Sbjct: 66 TYKADK 71
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 62 PDRIMAIMGPSGSGKSTLLDAL 83
P + + ++G +GSGKSTLL A
Sbjct: 46 PGQRVGLLGRTGSGKSTLLSAF 67
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109
G AQP ++ + GP G+GK+ L A+A I +L +K G R
Sbjct: 178 GIAQPKGVI-LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSR 228
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 68 IMGPSGSGKSTLLDAL 83
I+G +GSGKS+LLDA+
Sbjct: 28 IIGQNGSGKSSLLDAI 43
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 61 QPDRIMAIMGPSGSGKSTLLDA 82
+P I+ + GP+GSGKST L A
Sbjct: 165 RPHGIILVTGPTGSGKSTTLYA 186
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 68 IMGPSGSGKSTLLDAL 83
I+G +GSGKS+LLDA+
Sbjct: 28 IIGQNGSGKSSLLDAI 43
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 68 IMGPSGSGKSTLLDAL 83
I+G +GSGKS+LLDA+
Sbjct: 28 IIGQNGSGKSSLLDAI 43
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport
Atp- Binding Protein
Length = 375
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+ ++GPSG GK+T L +AG
Sbjct: 35 LVLLGPSGCGKTTTLRXIAG 54
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALA 84
TG P R + + GP G+GKS L A+A
Sbjct: 160 FTGKRTPWRGILLFGPPGTGKSYLAKAVA 188
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87
P ++ + GP+GSGKST L A+ L
Sbjct: 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 64 RIMAIMGPSGSGKSTLLDAL 83
R +A++G +GSGK+TL +AL
Sbjct: 10 RTVALVGHAGSGKTTLTEAL 29
>pdb|2P67|A Chain A, Crystal Structure Of LaoAO TRANSPORT SYSTEM KINASE
Length = 341
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 39 VEAKNLRNGA-KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83
VE+++ R+ A +L++ + Y + + G G+GKST L+A
Sbjct: 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF 76
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSIN 115
+AI+G GKSTLL+ L G+ + + +K T R IV I+
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQ---------KISITSRKAQTTRHRIVGIH 48
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 23 DNTPAVLAHLV----WEEVKVEAKNLRNGAKKKLINGLTGYAQP-DRIM 66
D AV A LV WE +V+ K LR G K+ G+A P DR++
Sbjct: 408 DRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAERGFAVPLDRLV 456
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRL--SKNVI-----LTGSVQLNRKKGGTNRRDIVSIN 115
++AI G +GSGK++LL + G L S+ +I ++ Q + GT + +I+ ++
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIGVS 123
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSIN 115
+AI+G GKSTLL+ L G+ + + +K T R IV I+
Sbjct: 10 FIAIVGRPNVGKSTLLNKLLGQ---------KISITSRKAQTTRHRIVGIH 51
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVI-------------LTGSVQL--NRKKGGTNRR 109
I + GP+G+GKS+L +A++ L N I + G+ +L ++GG
Sbjct: 42 ITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNRNAVDGTARLVFQFERGGKRYE 101
Query: 110 DIVSINLIKKK 120
I IN +++K
Sbjct: 102 IIREINALQRK 112
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAI 68
ND PA +A + + A+ + N A ++ + G+TGYA+ + I +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 35 EEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVI-L 93
EE+K + L++ +K I G P I+ ++GP G+GK+ L A+AG + +
Sbjct: 26 EELKEVVEFLKDPSKFNRI----GARMPKGIL-LVGPPGTGKTLLARAVAGEANVPFFHI 80
Query: 94 TGS--VQLNRKKGGTNRRDIVS 113
+GS V+L G RD+ +
Sbjct: 81 SGSDFVELFVGVGAARVRDLFA 102
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 22 NDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAI 68
ND PA +A + + A+ + N A ++ + G+TGYA+ + I +
Sbjct: 368 NDFKPARIA---IDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRL 87
++AI G +GSGK++LL + G L
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGEL 88
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRL 87
++AI G +GSGK++LL + G L
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGEL 88
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRL 87
++AI G +GSGK++LL + G L
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGEL 88
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+A++G SGKS++L+AL+G
Sbjct: 73 IAVIGDQSSGKSSVLEALSG 92
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 66 MAIMGPSGSGKSTLLDALAG 85
+A++G SGKS++L+AL+G
Sbjct: 48 IAVIGDQSSGKSSVLEALSG 67
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87
G+ +P IM I+G +G GK+T L LA RL
Sbjct: 96 GFRKPAVIM-IVGVNGGGKTTSLGKLAHRL 124
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN 107
+ G GSGKST + LA L K V L R+ GGT
Sbjct: 2 FITFEGIDGSGKSTQIQLLAQYLEKR---GKKVILKREPGGTE 41
>pdb|4AD8|A Chain A, Crystal Structure Of A Deletion Mutant Of Deinococcus
Radiodurans Recn
Length = 517
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 67 AIMGPSGSGKSTLLDA----LAGRLSKNVILTGSVQL 99
A G +G+GKS ++DA L GR + ++I +G +L
Sbjct: 64 AFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKEL 100
>pdb|4ABY|A Chain A, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|B Chain B, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|C Chain C, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
pdb|4ABY|D Chain D, Crystal Structure Of Deinococcus Radiodurans Recn Head
Domain
Length = 415
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 67 AIMGPSGSGKSTLLDA----LAGRLSKNVILTGSVQL 99
A G +G+GKS ++DA L GR + ++I +G +L
Sbjct: 64 AFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKEL 100
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 64 RIMAIMGPSGSGKSTLLDALAGRLSKN---VILTGSVQLNRKKGGTNRRDI 111
+I+ ++G +G+GK+T L A+AG + +I G N+ NR I
Sbjct: 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGI 83
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 66 MAIMGPSGSGKSTLLDALAGR 86
+ I G +GKS+LL+ALAGR
Sbjct: 7 VVIAGRPNAGKSSLLNALAGR 27
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101
++++ +MG +G+GKS L LA VI + +Q+ +
Sbjct: 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYK 78
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87
G+ +P IM I+G +G GK+T L LA RL
Sbjct: 153 GFRKPAVIM-IVGVNGGGKTTSLGKLAHRL 181
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 52 LINGLTGYAQPDRIMAIMGPSGSGKST---LLDALAGRLSKNVILTGS--VQLN 100
++ GL+ + + +A++G SG GKST LL+ ++ +V L G QLN
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 52 LINGLTGYAQPDRIMAIMGPSGSGKST---LLDALAGRLSKNVILTGS--VQLN 100
++ GL+ + + +A++G SG GKST LL+ ++ +V L G QLN
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN 1101
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 66 MAIMGPSGSGKSTLLDALAGR 86
+ I G +GKS+LL+ALAGR
Sbjct: 10 VVIAGRPNAGKSSLLNALAGR 30
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 39 VEAKNLRNGAKKKLINGLTGYAQPDR--IMAIMGPSGSGKSTLLDALAGRLS 88
VEA L+ + +L NGL + + D+ ++ I G G + +L+ G+L+
Sbjct: 59 VEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLA 110
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97
I+ + PSG GK+T+ + L + N++ + SV
Sbjct: 29 ILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSV 61
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 66 MAIMGPSGSGKSTLLDALAGR 86
+ I G +GKS+LL+ALAGR
Sbjct: 7 VVIAGRPNAGKSSLLNALAGR 27
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,745,476
Number of Sequences: 62578
Number of extensions: 137165
Number of successful extensions: 687
Number of sequences better than 100.0: 228
Number of HSP's better than 100.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 244
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)