Query 033293
Match_columns 122
No_of_seqs 321 out of 2731
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 1.3E-21 2.8E-26 148.9 9.3 79 30-117 3-83 (254)
2 COG1120 FepC ABC-type cobalami 99.9 2.2E-21 4.8E-26 148.1 9.1 79 31-118 2-85 (258)
3 COG1116 TauB ABC-type nitrate/ 99.8 1.3E-20 2.7E-25 142.6 10.4 77 31-116 3-79 (248)
4 COG3839 MalK ABC-type sugar tr 99.8 1.4E-19 3E-24 142.7 9.7 78 30-117 2-83 (338)
5 COG3842 PotA ABC-type spermidi 99.8 1.6E-19 3.5E-24 143.0 9.7 78 30-116 4-84 (352)
6 cd03293 ABC_NrtD_SsuB_transpor 99.8 4.6E-19 1E-23 131.1 10.7 81 32-117 1-81 (220)
7 cd03261 ABC_Org_Solvent_Resist 99.8 7.3E-19 1.6E-23 131.2 10.4 77 32-117 1-85 (235)
8 PRK11248 tauB taurine transpor 99.8 1E-18 2.2E-23 132.6 11.3 77 32-117 2-78 (255)
9 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 6.8E-19 1.5E-23 129.8 9.7 81 32-117 1-90 (218)
10 cd03259 ABC_Carb_Solutes_like 99.8 8.3E-19 1.8E-23 129.0 9.9 77 32-117 1-80 (213)
11 TIGR00960 3a0501s02 Type II (G 99.8 6.4E-19 1.4E-23 129.9 9.2 79 32-117 2-88 (216)
12 cd03296 ABC_CysA_sulfate_impor 99.8 1.5E-18 3.3E-23 129.9 11.3 78 31-117 2-82 (239)
13 PRK13537 nodulation ABC transp 99.8 1.5E-18 3.3E-23 135.0 10.5 79 30-117 6-88 (306)
14 cd03224 ABC_TM1139_LivF_branch 99.8 1.4E-18 3.1E-23 128.2 9.9 77 32-117 1-83 (222)
15 PRK11247 ssuB aliphatic sulfon 99.8 1.4E-18 3E-23 132.3 10.0 79 30-117 11-89 (257)
16 COG0410 LivF ABC-type branched 99.8 1.1E-18 2.4E-23 130.8 9.2 78 30-116 2-85 (237)
17 TIGR02673 FtsE cell division A 99.8 1.6E-18 3.4E-23 127.5 9.9 78 32-117 2-87 (214)
18 TIGR01288 nodI ATP-binding ABC 99.8 1.9E-18 4.1E-23 134.0 10.8 78 31-117 4-85 (303)
19 cd03301 ABC_MalK_N The N-termi 99.8 2.1E-18 4.7E-23 126.7 10.6 77 32-117 1-80 (213)
20 PRK13536 nodulation factor exp 99.8 2.4E-18 5.3E-23 135.8 11.4 79 30-117 40-122 (340)
21 cd03262 ABC_HisP_GlnQ_permease 99.8 2.1E-18 4.6E-23 126.6 10.1 76 32-116 1-83 (213)
22 cd03265 ABC_DrrA DrrA is the A 99.8 1.5E-18 3.3E-23 128.3 9.4 77 32-117 1-81 (220)
23 cd03263 ABC_subfamily_A The AB 99.8 1.8E-18 4E-23 127.6 9.7 78 32-116 1-82 (220)
24 cd03257 ABC_NikE_OppD_transpor 99.8 2.5E-18 5.4E-23 127.2 10.3 81 32-117 2-90 (228)
25 cd03233 ABC_PDR_domain1 The pl 99.8 2.8E-18 6.1E-23 126.0 10.4 84 31-116 3-90 (202)
26 PRK11629 lolD lipoprotein tran 99.8 3.6E-18 7.9E-23 127.4 11.2 82 31-117 5-95 (233)
27 cd03219 ABC_Mj1267_LivG_branch 99.8 2E-18 4.3E-23 128.7 9.7 77 32-117 1-83 (236)
28 cd03258 ABC_MetN_methionine_tr 99.8 1.9E-18 4.1E-23 128.7 9.6 81 32-117 2-90 (233)
29 COG1126 GlnQ ABC-type polar am 99.8 1.2E-18 2.6E-23 130.0 8.4 77 31-116 2-84 (240)
30 cd03269 ABC_putative_ATPase Th 99.8 1.5E-18 3.3E-23 127.4 8.9 76 32-116 1-77 (210)
31 cd03292 ABC_FtsE_transporter F 99.8 2.1E-18 4.6E-23 126.7 9.6 78 32-117 1-86 (214)
32 COG3638 ABC-type phosphate/pho 99.8 1.1E-18 2.4E-23 131.5 8.2 79 30-116 2-88 (258)
33 COG1131 CcmA ABC-type multidru 99.8 1.5E-18 3.2E-23 134.6 9.2 79 31-117 4-86 (293)
34 cd03226 ABC_cobalt_CbiO_domain 99.8 1.4E-18 3E-23 127.3 8.5 76 34-117 2-79 (205)
35 cd03235 ABC_Metallic_Cations A 99.8 5.7E-19 1.2E-23 129.9 6.3 75 34-117 2-76 (213)
36 COG1136 SalX ABC-type antimicr 99.8 2.1E-18 4.5E-23 129.6 9.3 81 32-117 2-91 (226)
37 PRK11831 putative ABC transpor 99.8 4E-18 8.7E-23 130.0 11.0 79 30-117 6-92 (269)
38 cd03218 ABC_YhbG The ABC trans 99.8 2.6E-18 5.6E-23 127.7 9.7 77 32-117 1-83 (232)
39 cd03229 ABC_Class3 This class 99.8 5.2E-18 1.1E-22 122.2 11.0 76 32-116 1-83 (178)
40 PRK14250 phosphate ABC transpo 99.8 3.7E-18 8E-23 128.2 10.6 79 30-117 2-85 (241)
41 PRK13540 cytochrome c biogenes 99.8 3.1E-18 6.8E-23 125.2 10.0 76 32-116 2-81 (200)
42 TIGR03410 urea_trans_UrtE urea 99.8 3.1E-18 6.7E-23 127.3 10.1 77 32-117 1-83 (230)
43 cd03216 ABC_Carb_Monos_I This 99.8 5.2E-18 1.1E-22 121.0 10.8 78 32-118 1-84 (163)
44 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 3.8E-18 8.2E-23 127.5 10.6 76 32-116 2-81 (236)
45 PRK10908 cell division protein 99.8 3.2E-18 6.9E-23 126.8 9.9 78 32-117 2-87 (222)
46 TIGR02315 ABC_phnC phosphonate 99.8 1.5E-18 3.3E-23 129.8 8.2 77 32-116 2-86 (243)
47 cd03230 ABC_DR_subfamily_A Thi 99.8 5.3E-18 1.1E-22 121.6 10.7 77 32-117 1-81 (173)
48 cd03256 ABC_PhnC_transporter A 99.8 3.2E-18 6.9E-23 127.8 9.8 76 33-116 2-85 (241)
49 TIGR02314 ABC_MetN D-methionin 99.8 4.9E-18 1.1E-22 134.4 11.4 81 32-117 2-90 (343)
50 PRK09493 glnQ glutamine ABC tr 99.8 4.9E-18 1.1E-22 127.1 10.7 76 32-116 2-84 (240)
51 cd03260 ABC_PstB_phosphate_tra 99.8 3E-18 6.5E-23 127.1 9.5 77 32-117 1-89 (227)
52 cd03225 ABC_cobalt_CbiO_domain 99.8 2.4E-18 5.2E-23 126.3 8.9 77 34-117 2-83 (211)
53 PRK10584 putative ABC transpor 99.8 5.5E-18 1.2E-22 125.8 10.8 83 30-117 5-96 (228)
54 TIGR03265 PhnT2 putative 2-ami 99.8 4.3E-18 9.2E-23 135.0 10.7 79 30-117 3-84 (353)
55 PRK10247 putative ABC transpor 99.8 3.6E-18 7.8E-23 127.1 9.7 79 30-117 6-89 (225)
56 PRK10895 lipopolysaccharide AB 99.8 3.8E-18 8.2E-23 127.8 9.9 78 31-117 3-86 (241)
57 PRK13637 cbiO cobalt transport 99.8 5E-18 1.1E-22 130.8 10.8 83 31-117 2-91 (287)
58 cd03266 ABC_NatA_sodium_export 99.8 3.3E-18 7.2E-23 126.1 9.3 81 32-117 2-86 (218)
59 TIGR00972 3a0107s01c2 phosphat 99.8 4.7E-18 1E-22 127.8 10.3 80 32-117 2-90 (247)
60 TIGR02211 LolD_lipo_ex lipopro 99.8 5.4E-18 1.2E-22 125.2 10.3 81 32-117 2-91 (221)
61 PRK13647 cbiO cobalt transport 99.8 5.9E-18 1.3E-22 129.6 10.9 79 31-117 4-87 (274)
62 PRK11650 ugpC glycerol-3-phosp 99.8 4.2E-18 9.2E-23 135.2 10.3 79 31-117 3-84 (356)
63 cd03268 ABC_BcrA_bacitracin_re 99.8 2.9E-18 6.4E-23 125.7 8.8 77 32-117 1-80 (208)
64 PRK13646 cbiO cobalt transport 99.8 4.4E-18 9.5E-23 131.0 10.1 83 31-117 2-93 (286)
65 PRK11614 livF leucine/isoleuci 99.8 5E-18 1.1E-22 126.8 10.1 77 31-116 5-87 (237)
66 PRK11124 artP arginine transpo 99.8 3.5E-18 7.6E-23 128.0 9.3 78 31-117 2-90 (242)
67 PRK11432 fbpC ferric transport 99.8 6E-18 1.3E-22 134.2 11.1 78 30-116 5-85 (351)
68 PRK10851 sulfate/thiosulfate t 99.8 5.4E-18 1.2E-22 134.5 10.8 78 31-117 2-82 (353)
69 TIGR03522 GldA_ABC_ATP gliding 99.8 5.5E-18 1.2E-22 131.4 10.7 78 31-117 2-83 (301)
70 PRK13638 cbiO cobalt transport 99.8 3E-18 6.4E-23 130.8 8.8 77 32-117 2-85 (271)
71 PRK11153 metN DL-methionine tr 99.8 6.3E-18 1.4E-22 133.4 10.9 81 32-117 2-90 (343)
72 PRK11264 putative amino-acid A 99.8 5.9E-18 1.3E-22 127.2 10.2 78 31-117 3-93 (250)
73 PRK13633 cobalt transporter AT 99.8 6.3E-18 1.4E-22 129.7 10.5 85 30-117 3-93 (280)
74 PRK15056 manganese/iron transp 99.8 6.2E-18 1.3E-22 129.2 10.1 79 31-117 6-86 (272)
75 PRK13538 cytochrome c biogenes 99.8 7.5E-18 1.6E-22 123.6 10.1 76 32-116 2-81 (204)
76 TIGR01189 ccmA heme ABC export 99.8 7.9E-18 1.7E-22 122.8 10.2 76 32-116 1-80 (198)
77 PRK11000 maltose/maltodextrin 99.8 8.3E-18 1.8E-22 134.0 11.1 78 31-117 3-83 (369)
78 PRK13649 cbiO cobalt transport 99.8 6.8E-18 1.5E-22 129.2 10.2 83 31-117 2-93 (280)
79 cd03295 ABC_OpuCA_Osmoprotecti 99.8 7.8E-18 1.7E-22 126.2 10.3 77 32-116 1-82 (242)
80 PRK14267 phosphate ABC transpo 99.8 6.8E-18 1.5E-22 127.2 10.0 81 31-117 4-93 (253)
81 PRK14242 phosphate transporter 99.8 8.2E-18 1.8E-22 126.8 10.4 82 30-117 5-95 (253)
82 COG1124 DppF ABC-type dipeptid 99.8 5.1E-18 1.1E-22 128.2 9.2 82 30-116 2-89 (252)
83 TIGR03005 ectoine_ehuA ectoine 99.8 9.1E-18 2E-22 126.6 10.4 64 32-104 1-64 (252)
84 PRK13539 cytochrome c biogenes 99.7 8.2E-18 1.8E-22 123.7 9.8 77 31-116 2-80 (207)
85 PRK13634 cbiO cobalt transport 99.7 7.4E-18 1.6E-22 130.1 9.9 83 31-117 2-93 (290)
86 COG1125 OpuBA ABC-type proline 99.7 2E-18 4.3E-23 131.7 6.6 74 32-114 2-80 (309)
87 PRK13543 cytochrome c biogenes 99.7 1.1E-17 2.5E-22 123.5 10.5 78 30-116 10-89 (214)
88 TIGR03411 urea_trans_UrtD urea 99.7 9.2E-18 2E-22 125.6 10.1 77 31-116 2-84 (242)
89 PRK14273 phosphate ABC transpo 99.7 1.1E-17 2.3E-22 126.3 10.5 82 30-117 6-96 (254)
90 TIGR01978 sufC FeS assembly AT 99.7 9.8E-18 2.1E-22 125.3 10.1 77 32-117 1-85 (243)
91 PRK13635 cbiO cobalt transport 99.7 1.2E-17 2.6E-22 128.2 10.9 80 31-117 5-89 (279)
92 PRK13548 hmuV hemin importer A 99.7 1.2E-17 2.7E-22 126.7 10.8 78 31-117 2-84 (258)
93 PRK11701 phnK phosphonate C-P 99.7 9.7E-18 2.1E-22 126.9 10.1 78 31-117 6-97 (258)
94 PRK09452 potA putrescine/sperm 99.7 1.1E-17 2.4E-22 133.7 10.9 79 30-117 13-94 (375)
95 PRK13636 cbiO cobalt transport 99.7 8.2E-18 1.8E-22 129.3 9.8 79 31-117 5-90 (283)
96 PRK13639 cbiO cobalt transport 99.7 1.2E-17 2.6E-22 127.8 10.6 78 32-117 2-86 (275)
97 PRK09984 phosphonate/organopho 99.7 1.1E-17 2.4E-22 126.8 10.3 82 30-117 3-94 (262)
98 TIGR02769 nickel_nikE nickel i 99.7 1.2E-17 2.6E-22 127.1 10.4 83 32-117 3-96 (265)
99 PRK14235 phosphate transporter 99.7 1.4E-17 3.1E-22 126.9 10.8 83 29-117 17-108 (267)
100 PRK09536 btuD corrinoid ABC tr 99.7 1.3E-17 2.8E-22 134.4 11.1 77 31-116 3-84 (402)
101 PRK13644 cbiO cobalt transport 99.7 1.4E-17 3E-22 127.5 10.8 78 32-117 2-85 (274)
102 cd03264 ABC_drug_resistance_li 99.7 7E-18 1.5E-22 123.9 8.8 76 32-117 1-80 (211)
103 PRK10575 iron-hydroxamate tran 99.7 1.1E-17 2.3E-22 127.3 10.0 78 31-117 11-93 (265)
104 PRK11300 livG leucine/isoleuci 99.7 1.3E-17 2.8E-22 125.6 10.4 77 31-116 5-87 (255)
105 cd03231 ABC_CcmA_heme_exporter 99.7 8.6E-18 1.9E-22 123.1 9.1 76 32-116 1-80 (201)
106 PRK13632 cbiO cobalt transport 99.7 1.4E-17 3.1E-22 127.1 10.7 81 30-117 6-91 (271)
107 PRK14274 phosphate ABC transpo 99.7 1.1E-17 2.4E-22 126.6 9.9 82 30-117 11-101 (259)
108 cd03254 ABCC_Glucan_exporter_l 99.7 6.3E-18 1.4E-22 125.4 8.2 78 32-117 3-85 (229)
109 TIGR03873 F420-0_ABC_ATP propo 99.7 1.3E-17 2.8E-22 126.1 10.1 77 32-117 2-83 (256)
110 PRK14256 phosphate ABC transpo 99.7 2.2E-17 4.9E-22 124.4 11.2 81 31-117 4-93 (252)
111 PRK11231 fecE iron-dicitrate t 99.7 1.2E-17 2.6E-22 126.2 9.8 78 31-117 2-84 (255)
112 PRK14261 phosphate ABC transpo 99.7 2.1E-17 4.6E-22 124.6 11.1 82 30-117 5-95 (253)
113 PRK14247 phosphate ABC transpo 99.7 2E-17 4.4E-22 124.4 10.9 81 31-117 3-90 (250)
114 PRK10619 histidine/lysine/argi 99.7 1.2E-17 2.7E-22 126.3 9.8 66 31-105 5-70 (257)
115 PRK10744 pstB phosphate transp 99.7 2E-17 4.3E-22 125.4 11.0 82 29-116 11-101 (260)
116 PRK15112 antimicrobial peptide 99.7 1.6E-17 3.5E-22 126.6 10.5 85 30-117 3-95 (267)
117 TIGR03740 galliderm_ABC gallid 99.7 1.8E-17 4E-22 122.8 10.5 76 32-116 1-77 (223)
118 PRK11607 potG putrescine trans 99.7 2.2E-17 4.8E-22 132.0 11.7 79 29-116 17-98 (377)
119 PRK13643 cbiO cobalt transport 99.7 1.1E-17 2.3E-22 129.1 9.5 81 32-116 2-91 (288)
120 PRK14269 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 124.7 10.5 81 31-117 2-87 (246)
121 PRK10253 iron-enterobactin tra 99.7 1.7E-17 3.7E-22 126.2 10.5 79 30-117 6-89 (265)
122 PRK14237 phosphate transporter 99.7 2.1E-17 4.4E-22 126.0 11.0 83 29-117 18-109 (267)
123 PRK13631 cbiO cobalt transport 99.7 2.4E-17 5.1E-22 129.2 11.5 72 30-105 20-91 (320)
124 TIGR03608 L_ocin_972_ABC putat 99.7 8.4E-18 1.8E-22 122.9 8.4 74 35-117 2-84 (206)
125 PRK13652 cbiO cobalt transport 99.7 2.2E-17 4.7E-22 126.6 11.0 79 31-117 3-86 (277)
126 PRK14240 phosphate transporter 99.7 1.9E-17 4.2E-22 124.5 10.6 80 31-116 3-91 (250)
127 PRK14262 phosphate ABC transpo 99.7 1.9E-17 4.1E-22 124.6 10.5 81 31-117 3-92 (250)
128 PRK13648 cbiO cobalt transport 99.7 1.8E-17 3.9E-22 126.4 10.5 81 30-117 6-91 (269)
129 cd03246 ABCC_Protease_Secretio 99.7 1.5E-17 3.3E-22 119.3 9.5 78 32-116 1-83 (173)
130 cd03213 ABCG_EPDR ABCG transpo 99.7 1.7E-17 3.8E-22 121.1 9.9 83 31-116 3-89 (194)
131 PRK14268 phosphate ABC transpo 99.7 2.6E-17 5.6E-22 124.7 11.2 82 29-116 10-100 (258)
132 PRK13650 cbiO cobalt transport 99.7 1.5E-17 3.2E-22 127.7 10.0 81 31-117 4-89 (279)
133 PRK14259 phosphate ABC transpo 99.7 1.4E-17 3E-22 127.1 9.7 82 30-117 12-102 (269)
134 cd03252 ABCC_Hemolysin The ABC 99.7 1E-17 2.3E-22 125.0 8.9 79 32-117 1-84 (237)
135 cd03244 ABCC_MRP_domain2 Domai 99.7 1.1E-17 2.3E-22 123.6 8.8 79 32-117 3-86 (221)
136 cd03215 ABC_Carb_Monos_II This 99.7 1.9E-17 4.2E-22 119.6 9.9 73 31-116 4-82 (182)
137 PRK15079 oligopeptide ABC tran 99.7 2.7E-17 5.9E-22 129.4 11.5 85 30-117 7-106 (331)
138 cd03247 ABCC_cytochrome_bd The 99.7 9.2E-18 2E-22 120.8 8.1 78 32-116 1-82 (178)
139 PRK14270 phosphate ABC transpo 99.7 2.2E-17 4.8E-22 124.4 10.5 82 30-117 3-93 (251)
140 TIGR01166 cbiO cobalt transpor 99.7 8.1E-18 1.7E-22 122.0 7.7 65 50-117 5-76 (190)
141 PRK14254 phosphate ABC transpo 99.7 4.8E-17 1E-21 125.3 12.4 83 29-117 37-128 (285)
142 PRK14241 phosphate transporter 99.7 1.8E-17 3.9E-22 125.5 9.8 80 31-116 4-92 (258)
143 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.3E-17 2.8E-22 124.5 8.8 79 32-116 1-84 (238)
144 PRK13641 cbiO cobalt transport 99.7 2.5E-17 5.4E-22 126.9 10.6 83 31-117 2-93 (287)
145 cd03223 ABCD_peroxisomal_ALDP 99.7 1.9E-17 4.1E-22 118.4 9.2 71 32-116 1-71 (166)
146 PRK14248 phosphate ABC transpo 99.7 2.8E-17 6E-22 125.1 10.6 81 30-116 20-109 (268)
147 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 3E-17 6.4E-22 115.1 9.8 71 32-117 1-71 (144)
148 PRK10418 nikD nickel transport 99.7 2.7E-17 5.9E-22 124.3 10.3 80 31-117 4-87 (254)
149 PRK14239 phosphate transporter 99.7 3.8E-17 8.2E-22 122.9 11.0 81 31-117 5-94 (252)
150 PRK14272 phosphate ABC transpo 99.7 2.9E-17 6.4E-22 123.5 10.4 82 30-117 3-93 (252)
151 PRK11308 dppF dipeptide transp 99.7 4.1E-17 8.8E-22 128.2 11.5 85 30-117 4-100 (327)
152 PRK14271 phosphate ABC transpo 99.7 4.6E-17 1E-21 124.9 11.6 82 29-116 19-108 (276)
153 cd03250 ABCC_MRP_domain1 Domai 99.7 2.1E-17 4.4E-22 121.0 9.2 72 32-116 1-73 (204)
154 PRK13547 hmuV hemin importer A 99.7 2.1E-17 4.5E-22 126.8 9.6 80 32-117 2-91 (272)
155 TIGR00968 3a0106s01 sulfate AB 99.7 3.2E-17 7E-22 122.8 10.4 77 32-117 1-80 (237)
156 cd03228 ABCC_MRP_Like The MRP 99.7 2E-17 4.3E-22 118.5 8.9 78 32-116 1-83 (171)
157 cd03217 ABC_FeS_Assembly ABC-t 99.7 3.2E-17 6.9E-22 120.1 10.2 77 32-117 1-85 (200)
158 TIGR02868 CydC thiol reductant 99.7 9.6E-18 2.1E-22 137.9 8.3 79 31-117 334-416 (529)
159 PRK13645 cbiO cobalt transport 99.7 2.6E-17 5.7E-22 126.7 10.2 84 30-117 5-98 (289)
160 PRK14238 phosphate transporter 99.7 3.5E-17 7.7E-22 125.0 10.8 82 30-117 23-113 (271)
161 cd03251 ABCC_MsbA MsbA is an e 99.7 2.2E-17 4.8E-22 122.9 9.4 78 32-116 1-83 (234)
162 PRK11022 dppD dipeptide transp 99.7 3.8E-17 8.3E-22 128.2 11.2 85 31-117 3-97 (326)
163 PRK09473 oppD oligopeptide tra 99.7 5.5E-17 1.2E-21 127.6 12.0 86 30-117 11-105 (330)
164 PRK14255 phosphate ABC transpo 99.7 4E-17 8.7E-22 122.9 10.7 81 30-116 4-93 (252)
165 cd03300 ABC_PotA_N PotA is an 99.7 3.5E-17 7.6E-22 122.1 10.2 76 32-116 1-79 (232)
166 TIGR03258 PhnT 2-aminoethylpho 99.7 3.4E-17 7.4E-22 130.3 10.8 78 31-117 5-87 (362)
167 cd03369 ABCC_NFT1 Domain 2 of 99.7 2.7E-17 5.8E-22 120.7 9.4 80 31-117 6-90 (207)
168 TIGR02323 CP_lyasePhnK phospho 99.7 3.5E-17 7.7E-22 123.3 10.2 64 31-103 3-66 (253)
169 PRK10762 D-ribose transporter 99.7 3.3E-17 7.2E-22 134.4 10.9 78 31-117 4-87 (501)
170 PRK13642 cbiO cobalt transport 99.7 4.2E-17 9.1E-22 125.0 10.7 81 31-117 4-89 (277)
171 PRK14265 phosphate ABC transpo 99.7 3.6E-17 7.8E-22 125.2 10.3 83 29-117 18-109 (274)
172 cd03248 ABCC_TAP TAP, the Tran 99.7 2.2E-17 4.8E-22 122.4 8.8 81 30-116 10-95 (226)
173 cd03245 ABCC_bacteriocin_expor 99.7 2.3E-17 5.1E-22 121.7 8.8 79 32-117 3-86 (220)
174 PRK09544 znuC high-affinity zi 99.7 4E-17 8.7E-22 123.8 10.3 71 31-116 4-74 (251)
175 PRK14249 phosphate ABC transpo 99.7 4E-17 8.7E-22 123.0 10.2 82 30-117 3-93 (251)
176 PRK13640 cbiO cobalt transport 99.7 5E-17 1.1E-21 124.9 10.8 83 31-117 5-92 (282)
177 PRK14251 phosphate ABC transpo 99.7 4.8E-17 1E-21 122.4 10.5 81 31-117 4-93 (251)
178 PRK13651 cobalt transporter AT 99.7 2.3E-17 5E-22 128.5 9.0 70 31-104 2-71 (305)
179 PRK15439 autoinducer 2 ABC tra 99.7 5.7E-17 1.2E-21 133.4 11.8 79 30-117 10-94 (510)
180 PRK15093 antimicrobial peptide 99.7 6.8E-17 1.5E-21 126.9 11.7 85 31-117 3-97 (330)
181 TIGR02982 heterocyst_DevA ABC 99.7 4.5E-17 9.7E-22 120.6 10.1 80 32-116 2-89 (220)
182 PRK14236 phosphate transporter 99.7 5.3E-17 1.1E-21 124.0 10.7 82 29-116 23-113 (272)
183 PRK10419 nikE nickel transport 99.7 4.5E-17 9.8E-22 124.3 10.3 84 31-117 3-97 (268)
184 cd03253 ABCC_ATM1_transporter 99.7 3E-17 6.5E-22 122.3 9.0 77 32-116 1-82 (236)
185 COG1127 Ttg2A ABC-type transpo 99.7 2.5E-17 5.5E-22 124.5 8.5 79 29-116 6-92 (263)
186 PRK09700 D-allose transporter 99.7 4.9E-17 1.1E-21 133.5 10.9 79 30-117 4-88 (510)
187 PRK14245 phosphate ABC transpo 99.7 6.1E-17 1.3E-21 121.9 10.6 81 30-117 2-92 (250)
188 cd03232 ABC_PDR_domain2 The pl 99.7 4.3E-17 9.2E-22 118.8 9.4 81 31-116 3-86 (192)
189 PRK14266 phosphate ABC transpo 99.7 6.9E-17 1.5E-21 121.5 10.7 81 30-116 2-91 (250)
190 cd03234 ABCG_White The White s 99.7 3.4E-17 7.4E-22 121.7 8.7 81 31-116 3-88 (226)
191 COG1117 PstB ABC-type phosphat 99.7 1.7E-17 3.7E-22 123.9 7.0 81 30-116 6-95 (253)
192 PRK13541 cytochrome c biogenes 99.7 5.6E-17 1.2E-21 118.2 9.5 75 32-116 2-77 (195)
193 PRK14253 phosphate ABC transpo 99.7 4.1E-17 8.8E-22 122.7 9.1 81 31-117 3-91 (249)
194 TIGR01188 drrA daunorubicin re 99.7 2.5E-17 5.5E-22 127.7 8.1 65 50-117 6-74 (302)
195 PRK13549 xylose transporter AT 99.7 7.1E-17 1.5E-21 132.6 11.0 80 31-117 5-90 (506)
196 PRK11288 araG L-arabinose tran 99.7 8.2E-17 1.8E-21 132.1 11.3 78 31-117 4-87 (501)
197 cd03298 ABC_ThiQ_thiamine_tran 99.7 6.9E-17 1.5E-21 118.7 9.8 75 32-117 1-78 (211)
198 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 4.5E-17 9.7E-22 137.8 10.0 81 30-117 450-535 (686)
199 PRK14260 phosphate ABC transpo 99.7 6.4E-17 1.4E-21 122.6 9.8 81 30-116 6-95 (259)
200 cd03288 ABCC_SUR2 The SUR doma 99.7 6.4E-17 1.4E-21 122.6 9.7 80 30-116 18-102 (257)
201 TIGR02324 CP_lyasePhnL phospho 99.7 6.5E-17 1.4E-21 119.8 9.5 83 32-117 2-98 (224)
202 PRK14275 phosphate ABC transpo 99.7 1.2E-16 2.5E-21 123.2 11.1 81 30-116 38-127 (286)
203 PRK09580 sufC cysteine desulfu 99.7 7.1E-17 1.5E-21 121.1 9.5 77 32-117 2-86 (248)
204 cd03299 ABC_ModC_like Archeal 99.7 1E-16 2.2E-21 120.0 10.3 75 33-117 2-79 (235)
205 COG4152 ABC-type uncharacteriz 99.7 1.1E-17 2.3E-22 127.2 4.9 76 31-115 2-78 (300)
206 TIGR01277 thiQ thiamine ABC tr 99.7 8.4E-17 1.8E-21 118.6 9.6 74 33-117 2-78 (213)
207 PRK14244 phosphate ABC transpo 99.7 7.9E-17 1.7E-21 121.4 9.6 78 33-116 7-93 (251)
208 COG4559 ABC-type hemin transpo 99.7 3.4E-17 7.3E-22 122.3 7.4 67 31-106 1-67 (259)
209 TIGR02633 xylG D-xylose ABC tr 99.7 8.7E-17 1.9E-21 131.7 10.4 79 32-117 2-86 (500)
210 PRK14243 phosphate transporter 99.7 1.1E-16 2.4E-21 121.8 10.2 80 31-116 10-98 (264)
211 PRK10771 thiQ thiamine transpo 99.7 1.2E-16 2.6E-21 119.2 10.1 75 32-117 2-79 (232)
212 cd03290 ABCC_SUR1_N The SUR do 99.7 8.3E-17 1.8E-21 118.9 9.1 76 34-117 3-87 (218)
213 PRK14252 phosphate ABC transpo 99.7 1.3E-16 2.9E-21 121.2 10.3 82 30-117 15-107 (265)
214 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 4.8E-17 1E-21 138.0 8.5 81 30-117 476-561 (710)
215 COG0411 LivG ABC-type branched 99.7 1.3E-17 2.8E-22 126.0 4.4 68 30-106 3-70 (250)
216 COG2274 SunT ABC-type bacterio 99.7 7E-17 1.5E-21 137.6 9.4 81 29-116 469-554 (709)
217 COG1118 CysA ABC-type sulfate/ 99.7 3.8E-17 8.2E-22 127.2 7.0 76 32-116 3-84 (345)
218 cd03267 ABC_NatA_like Similar 99.7 7.7E-17 1.7E-21 120.8 8.4 63 50-115 34-100 (236)
219 COG2884 FtsE Predicted ATPase 99.7 2.9E-17 6.4E-22 120.7 5.8 77 32-116 2-86 (223)
220 PRK11176 lipid transporter ATP 99.7 7.2E-17 1.6E-21 134.0 8.9 80 31-117 341-425 (582)
221 PRK14263 phosphate ABC transpo 99.7 1.9E-16 4.1E-21 120.5 10.5 81 30-116 7-96 (261)
222 COG1135 AbcC ABC-type metal io 99.7 9.6E-17 2.1E-21 125.0 8.9 82 31-116 1-90 (339)
223 CHL00131 ycf16 sulfate ABC tra 99.7 2.1E-16 4.5E-21 118.9 10.5 66 31-105 7-74 (252)
224 COG1122 CbiO ABC-type cobalt t 99.7 1.5E-16 3.2E-21 120.3 9.6 81 30-118 2-88 (235)
225 PRK10790 putative multidrug tr 99.7 7.5E-17 1.6E-21 134.3 8.6 80 30-117 339-423 (592)
226 cd03214 ABC_Iron-Siderophores_ 99.7 1.6E-16 3.4E-21 114.6 9.1 63 34-105 2-64 (180)
227 cd03289 ABCC_CFTR2 The CFTR su 99.7 1.3E-16 2.9E-21 122.7 9.2 77 32-116 3-84 (275)
228 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.4E-16 2.9E-21 121.7 9.1 65 50-117 37-110 (269)
229 KOG0057 Mitochondrial Fe/S clu 99.7 5.8E-17 1.3E-21 133.4 7.5 79 30-117 350-433 (591)
230 PRK10522 multidrug transporter 99.7 1.3E-16 2.9E-21 132.0 9.8 78 31-116 322-404 (547)
231 TIGR01186 proV glycine betaine 99.7 1.3E-16 2.8E-21 127.1 9.3 65 49-116 5-78 (363)
232 TIGR01193 bacteriocin_ABC ABC- 99.7 8E-17 1.7E-21 136.7 8.4 80 30-117 472-556 (708)
233 PRK14264 phosphate ABC transpo 99.7 2.9E-16 6.2E-21 122.0 10.8 80 31-116 45-133 (305)
234 PRK14258 phosphate ABC transpo 99.7 2.8E-16 6.1E-21 119.3 10.4 81 30-116 6-95 (261)
235 PRK14257 phosphate ABC transpo 99.7 3E-16 6.4E-21 123.5 10.6 84 30-117 79-171 (329)
236 PF00005 ABC_tran: ABC transpo 99.7 5.8E-17 1.3E-21 111.1 5.8 62 53-117 1-67 (137)
237 PRK10982 galactose/methyl gala 99.7 1.6E-16 3.5E-21 129.9 9.4 74 35-117 2-81 (491)
238 PRK11174 cysteine/glutathione 99.7 1.7E-16 3.6E-21 132.1 9.6 78 31-117 349-431 (588)
239 TIGR02857 CydD thiol reductant 99.7 1.5E-16 3.2E-21 130.9 9.0 80 31-117 320-404 (529)
240 TIGR00958 3a01208 Conjugate Tr 99.7 1.1E-16 2.4E-21 136.3 8.5 82 30-117 477-563 (711)
241 TIGR03375 type_I_sec_LssB type 99.7 1.6E-16 3.5E-21 134.6 9.4 81 30-117 462-547 (694)
242 PRK10938 putative molybdenum t 99.7 1.5E-16 3.2E-21 130.0 8.6 77 31-116 3-84 (490)
243 PRK15064 ABC transporter ATP-b 99.7 2.7E-16 5.8E-21 129.8 10.1 70 32-116 2-71 (530)
244 PRK10261 glutathione transport 99.7 4.2E-16 9.2E-21 131.2 11.4 85 30-117 312-409 (623)
245 PRK10070 glycine betaine trans 99.7 3.7E-16 7.9E-21 125.9 10.5 64 51-117 42-114 (400)
246 PRK11160 cysteine/glutathione 99.7 2.1E-16 4.4E-21 131.7 9.3 80 30-116 337-421 (574)
247 PRK11819 putative ABC transpor 99.7 3E-16 6.5E-21 130.4 10.2 74 30-117 5-78 (556)
248 PRK13657 cyclic beta-1,2-gluca 99.7 2.9E-16 6.3E-21 130.8 10.1 79 31-117 334-417 (588)
249 cd03291 ABCC_CFTR1 The CFTR su 99.7 4.9E-16 1.1E-20 119.9 10.5 73 26-117 34-106 (282)
250 TIGR02770 nickel_nikD nickel i 99.7 1.4E-16 3.1E-21 118.7 7.3 66 52-117 1-70 (230)
251 COG4525 TauB ABC-type taurine 99.7 1.9E-16 4.2E-21 117.3 7.6 79 31-116 3-81 (259)
252 PRK15134 microcin C ABC transp 99.7 4.6E-16 1E-20 128.4 10.7 85 31-117 5-100 (529)
253 TIGR01184 ntrCD nitrate transp 99.7 2.1E-16 4.5E-21 118.1 7.7 61 53-116 1-61 (230)
254 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.7E-16 5.8E-21 117.1 8.0 65 32-105 23-87 (224)
255 PRK14246 phosphate ABC transpo 99.7 4.5E-16 9.7E-21 118.2 9.1 79 29-116 8-97 (257)
256 COG1132 MdlB ABC-type multidru 99.7 2.4E-16 5.2E-21 130.8 8.1 79 30-116 327-410 (567)
257 cd00267 ABC_ATPase ABC (ATP-bi 99.7 1.1E-15 2.4E-20 107.7 10.2 75 34-117 2-81 (157)
258 TIGR01842 type_I_sec_PrtD type 99.7 3.7E-16 8.1E-21 129.2 8.9 81 30-117 315-400 (544)
259 PRK09700 D-allose transporter 99.7 3.4E-16 7.3E-21 128.6 8.4 76 31-117 265-346 (510)
260 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 5.7E-16 1.2E-20 128.5 9.8 74 30-117 3-76 (552)
261 PRK10261 glutathione transport 99.7 1.2E-15 2.7E-20 128.4 11.7 69 30-103 11-79 (623)
262 PRK10938 putative molybdenum t 99.7 4.3E-16 9.3E-21 127.3 8.7 79 30-116 259-343 (490)
263 COG0444 DppD ABC-type dipeptid 99.7 9.1E-16 2E-20 119.7 10.1 84 32-117 2-96 (316)
264 PRK15134 microcin C ABC transp 99.7 5.5E-16 1.2E-20 127.9 9.4 84 30-117 274-370 (529)
265 PRK15064 ABC transporter ATP-b 99.7 6E-16 1.3E-20 127.7 9.6 71 31-116 319-389 (530)
266 PRK10636 putative ABC transpor 99.6 5.8E-16 1.3E-20 130.7 9.4 62 32-102 2-63 (638)
267 TIGR02203 MsbA_lipidA lipid A 99.6 3.7E-16 8E-21 129.3 8.0 80 30-116 329-413 (571)
268 PRK11144 modC molybdate transp 99.6 8.3E-16 1.8E-20 121.7 9.5 60 55-117 16-84 (352)
269 KOG0058 Peptide exporter, ABC 99.6 3.9E-16 8.4E-21 131.6 8.0 82 28-115 462-548 (716)
270 TIGR02204 MsbA_rel ABC transpo 99.6 5.1E-16 1.1E-20 128.7 8.6 82 30-117 336-422 (576)
271 PRK13546 teichoic acids export 99.6 1.1E-15 2.4E-20 116.9 9.8 70 30-102 3-86 (264)
272 TIGR02142 modC_ABC molybdenum 99.6 6.7E-16 1.5E-20 122.3 8.9 59 55-116 15-82 (354)
273 COG1137 YhbG ABC-type (unclass 99.6 2.2E-17 4.8E-22 122.3 0.2 65 49-116 16-86 (243)
274 COG0396 sufC Cysteine desulfur 99.6 5E-16 1.1E-20 116.8 7.5 70 30-105 2-71 (251)
275 TIGR01846 type_I_sec_HlyB type 99.6 6.3E-16 1.4E-20 131.1 8.7 81 30-117 454-539 (694)
276 PRK10789 putative multidrug tr 99.6 7.9E-16 1.7E-20 128.0 8.9 80 31-117 313-397 (569)
277 cd03297 ABC_ModC_molybdenum_tr 99.6 8.7E-16 1.9E-20 113.1 8.0 59 55-117 16-83 (214)
278 PLN03211 ABC transporter G-25; 99.6 1.5E-15 3.2E-20 128.8 10.5 68 49-117 80-148 (659)
279 COG4555 NatA ABC-type Na+ tran 99.6 1.6E-16 3.6E-21 117.9 4.1 76 32-115 2-81 (245)
280 KOG0061 Transporter, ABC super 99.6 1.2E-15 2.6E-20 128.5 9.8 89 28-117 22-112 (613)
281 TIGR01192 chvA glucan exporter 99.6 7.7E-16 1.7E-20 128.6 8.4 79 31-117 334-417 (585)
282 PRK13549 xylose transporter AT 99.6 7.8E-16 1.7E-20 126.4 8.3 82 31-117 259-346 (506)
283 TIGR02633 xylG D-xylose ABC tr 99.6 9E-16 2E-20 125.7 8.3 82 31-117 257-344 (500)
284 cd03222 ABC_RNaseL_inhibitor T 99.6 1.6E-15 3.5E-20 110.2 8.6 56 50-116 13-68 (177)
285 TIGR00956 3a01205 Pleiotropic 99.6 1.6E-15 3.5E-20 136.9 10.4 85 31-117 759-844 (1394)
286 PRK11819 putative ABC transpor 99.6 2E-15 4.4E-20 125.4 10.2 73 30-117 323-395 (556)
287 COG1123 ATPase components of v 99.6 2.2E-15 4.8E-20 124.6 10.2 85 31-117 5-99 (539)
288 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2.1E-15 4.6E-20 125.2 9.9 73 30-117 321-393 (552)
289 TIGR03269 met_CoM_red_A2 methy 99.6 1.1E-15 2.5E-20 125.7 8.2 83 30-116 278-372 (520)
290 PRK03695 vitamin B12-transport 99.6 1.4E-15 3E-20 114.8 7.9 62 52-117 11-77 (248)
291 PRK11147 ABC transporter ATPas 99.6 2E-15 4.2E-20 127.3 9.5 72 30-116 318-389 (635)
292 TIGR01194 cyc_pep_trnsptr cycl 99.6 2.6E-15 5.7E-20 124.7 10.2 83 30-116 336-423 (555)
293 COG4988 CydD ABC-type transpor 99.6 1.7E-15 3.6E-20 125.4 8.8 80 31-118 320-404 (559)
294 COG1129 MglA ABC-type sugar tr 99.6 1.5E-15 3.2E-20 124.7 8.5 67 30-105 7-73 (500)
295 COG4987 CydC ABC-type transpor 99.6 3.9E-16 8.4E-21 128.4 5.0 106 4-116 304-419 (573)
296 COG1134 TagH ABC-type polysacc 99.6 2.1E-15 4.5E-20 114.1 8.5 51 50-103 40-90 (249)
297 TIGR03269 met_CoM_red_A2 methy 99.6 1.9E-15 4.2E-20 124.4 8.5 60 32-100 1-62 (520)
298 PLN03232 ABC transporter C fam 99.6 1.9E-15 4.2E-20 137.1 9.1 80 31-117 1234-1318(1495)
299 PRK10636 putative ABC transpor 99.6 3.2E-15 7E-20 126.2 9.7 72 31-117 312-383 (638)
300 PLN03130 ABC transporter C fam 99.6 2.5E-15 5.5E-20 137.1 9.6 81 30-117 1236-1321(1622)
301 PRK10982 galactose/methyl gala 99.6 1.6E-15 3.4E-20 124.1 7.5 76 31-117 250-331 (491)
302 PTZ00243 ABC transporter; Prov 99.6 2.8E-15 6.2E-20 136.4 9.7 81 30-117 1307-1392(1560)
303 COG4133 CcmA ABC-type transpor 99.6 9.1E-16 2E-20 112.5 5.3 57 49-108 14-70 (209)
304 TIGR03415 ABC_choXWV_ATP choli 99.6 3.3E-15 7.1E-20 119.8 8.9 65 50-117 37-114 (382)
305 PRK11147 ABC transporter ATPas 99.6 3.5E-15 7.6E-20 125.8 8.9 63 31-102 3-65 (635)
306 COG4604 CeuD ABC-type enteroch 99.6 1.2E-15 2.7E-20 113.1 5.3 66 32-106 2-67 (252)
307 COG3845 ABC-type uncharacteriz 99.6 3.9E-15 8.4E-20 121.4 8.7 67 30-105 3-69 (501)
308 PLN03073 ABC transporter F fam 99.6 6E-15 1.3E-19 126.2 10.1 74 30-117 507-580 (718)
309 PRK10535 macrolide transporter 99.6 1E-14 2.3E-19 123.3 11.3 83 30-117 3-94 (648)
310 COG4136 ABC-type uncharacteriz 99.6 6.5E-15 1.4E-19 105.6 8.5 79 31-115 2-83 (213)
311 COG1123 ATPase components of v 99.6 5.7E-15 1.2E-19 122.2 9.2 73 28-103 277-354 (539)
312 COG4608 AppF ABC-type oligopep 99.6 5.6E-15 1.2E-19 113.2 8.4 73 30-105 3-78 (268)
313 COG1119 ModF ABC-type molybden 99.6 5.5E-15 1.2E-19 112.0 8.2 78 28-114 28-111 (257)
314 TIGR00957 MRP_assoc_pro multi 99.6 4.5E-15 9.8E-20 134.9 9.1 81 30-117 1283-1368(1522)
315 KOG0056 Heavy metal exporter H 99.6 1.7E-15 3.8E-20 124.3 5.7 80 29-116 535-619 (790)
316 PRK11288 araG L-arabinose tran 99.6 2.9E-15 6.2E-20 123.0 6.9 64 51-117 267-336 (501)
317 PRK10762 D-ribose transporter 99.6 3.4E-15 7.3E-20 122.5 7.3 64 51-117 266-335 (501)
318 PLN03140 ABC transporter G fam 99.6 7.7E-15 1.7E-19 133.0 10.2 88 29-117 865-961 (1470)
319 PTZ00265 multidrug resistance 99.6 3.4E-15 7.4E-20 135.3 7.8 84 30-116 1164-1303(1466)
320 TIGR01257 rim_protein retinal- 99.6 1E-14 2.2E-19 135.0 10.9 80 31-117 1937-2020(2272)
321 COG4619 ABC-type uncharacteriz 99.6 4.1E-15 8.9E-20 108.1 6.3 55 49-106 15-69 (223)
322 TIGR01257 rim_protein retinal- 99.6 1.9E-14 4.2E-19 133.2 11.9 81 30-117 927-1011(2272)
323 TIGR01271 CFTR_protein cystic 99.6 1.1E-14 2.4E-19 132.2 10.2 80 30-117 1216-1300(1490)
324 PRK15177 Vi polysaccharide exp 99.6 4.2E-15 9.1E-20 110.1 6.2 49 52-103 2-51 (213)
325 COG4181 Predicted ABC-type tra 99.6 7.9E-15 1.7E-19 106.9 7.4 82 31-117 6-96 (228)
326 TIGR00954 3a01203 Peroxysomal 99.6 1.1E-14 2.3E-19 123.5 9.4 73 31-117 451-523 (659)
327 COG4618 ArpD ABC-type protease 99.6 4.9E-15 1.1E-19 121.5 6.9 89 21-116 324-417 (580)
328 TIGR03771 anch_rpt_ABC anchore 99.6 4E-15 8.7E-20 110.6 5.7 57 58-117 1-57 (223)
329 PRK15439 autoinducer 2 ABC tra 99.6 5.5E-15 1.2E-19 121.7 7.0 62 52-116 278-345 (510)
330 PRK13545 tagH teichoic acids e 99.6 1.5E-14 3.2E-19 120.1 9.5 68 30-103 20-87 (549)
331 PTZ00265 multidrug resistance 99.6 7.1E-15 1.5E-19 133.2 7.5 81 31-117 382-468 (1466)
332 cd03237 ABC_RNaseL_inhibitor_d 99.5 1.1E-14 2.4E-19 110.3 7.1 55 52-116 9-68 (246)
333 COG3840 ThiQ ABC-type thiamine 99.5 1E-14 2.2E-19 107.0 6.6 63 32-105 2-64 (231)
334 TIGR00955 3a01204 The Eye Pigm 99.5 6.5E-15 1.4E-19 123.9 6.4 69 49-117 37-107 (617)
335 PLN03140 ABC transporter G fam 99.5 1.2E-14 2.6E-19 131.7 8.0 69 49-117 177-247 (1470)
336 cd03238 ABC_UvrA The excision 99.5 1.3E-14 2.8E-19 105.3 6.7 61 49-116 7-67 (176)
337 COG4167 SapF ABC-type antimicr 99.5 7.6E-15 1.6E-19 108.2 3.9 72 30-104 3-77 (267)
338 COG0488 Uup ATPase components 99.5 4.2E-14 9.1E-19 117.4 8.4 73 30-117 2-74 (530)
339 KOG0055 Multidrug/pheromone ex 99.5 3.2E-14 6.8E-19 125.7 8.0 83 28-116 347-434 (1228)
340 PRK13409 putative ATPase RIL; 99.5 6.2E-14 1.4E-18 117.7 9.4 70 30-117 339-408 (590)
341 cd03236 ABC_RNaseL_inhibitor_d 99.5 3.5E-14 7.5E-19 108.2 5.3 50 51-104 15-75 (255)
342 COG4615 PvdE ABC-type sideroph 99.5 1.2E-13 2.6E-18 111.1 8.3 71 29-107 320-390 (546)
343 COG4674 Uncharacterized ABC-ty 99.5 4.7E-14 1E-18 104.6 5.5 66 30-104 4-70 (249)
344 COG4586 ABC-type uncharacteriz 99.5 2.2E-14 4.8E-19 110.5 3.6 51 51-104 38-88 (325)
345 KOG0065 Pleiotropic drug resis 99.5 1.1E-13 2.5E-18 122.7 7.6 83 31-116 787-871 (1391)
346 COG1101 PhnK ABC-type uncharac 99.5 8.3E-14 1.8E-18 104.4 5.4 70 33-106 3-72 (263)
347 TIGR00957 MRP_assoc_pro multi 99.5 2.6E-13 5.6E-18 123.6 9.5 71 31-116 636-706 (1522)
348 COG0488 Uup ATPase components 99.4 3.1E-13 6.7E-18 112.3 8.4 75 30-118 320-394 (530)
349 TIGR00956 3a01205 Pleiotropic 99.4 2.1E-13 4.5E-18 123.4 7.7 68 50-117 74-146 (1394)
350 PLN03073 ABC transporter F fam 99.4 3.5E-13 7.5E-18 115.4 8.6 69 29-103 175-243 (718)
351 cd00820 PEPCK_HprK Phosphoenol 99.4 2.4E-13 5.3E-18 91.6 6.0 46 50-104 2-47 (107)
352 KOG0054 Multidrug resistance-a 99.4 8.5E-13 1.9E-17 118.4 9.3 80 30-116 1137-1221(1381)
353 KOG0055 Multidrug/pheromone ex 99.4 6.8E-13 1.5E-17 117.4 8.3 85 25-115 981-1070(1228)
354 PLN03130 ABC transporter C fam 99.4 1.5E-12 3.2E-17 119.2 8.8 73 31-117 614-687 (1622)
355 PLN03232 ABC transporter C fam 99.4 2E-12 4.4E-17 117.6 8.6 74 31-117 614-687 (1495)
356 TIGR01271 CFTR_protein cystic 99.3 1.8E-12 3.9E-17 117.9 7.5 56 50-116 439-494 (1490)
357 COG4598 HisP ABC-type histidin 99.3 7.2E-13 1.6E-17 97.5 3.9 67 30-105 5-71 (256)
358 PRK13409 putative ATPase RIL; 99.3 8.1E-13 1.8E-17 111.0 4.2 51 50-104 87-148 (590)
359 COG4107 PhnK ABC-type phosphon 99.3 1.2E-12 2.7E-17 96.0 4.3 63 30-101 5-67 (258)
360 COG4175 ProV ABC-type proline/ 99.3 1.8E-12 3.9E-17 101.8 4.5 51 52-105 43-93 (386)
361 PTZ00243 ABC transporter; Prov 99.3 9E-12 2E-16 113.8 8.1 57 50-117 673-729 (1560)
362 TIGR03238 dnd_assoc_3 dnd syst 99.3 5.7E-12 1.2E-16 103.5 5.1 52 50-106 19-71 (504)
363 COG4178 ABC-type uncharacteriz 99.3 2.1E-11 4.5E-16 102.3 8.2 76 29-118 390-465 (604)
364 COG4172 ABC-type uncharacteriz 99.2 3.5E-11 7.5E-16 97.3 8.6 73 30-104 5-79 (534)
365 COG5265 ATM1 ABC-type transpor 99.2 4.3E-12 9.4E-17 102.5 3.2 78 31-116 262-344 (497)
366 COG4148 ModC ABC-type molybdat 99.2 1.6E-11 3.4E-16 95.3 5.9 60 54-116 15-83 (352)
367 COG4778 PhnL ABC-type phosphon 99.2 3.6E-11 7.8E-16 87.9 7.1 68 31-101 4-72 (235)
368 COG4172 ABC-type uncharacteriz 99.2 6.2E-11 1.4E-15 95.8 9.0 74 28-105 273-351 (534)
369 KOG0059 Lipid exporter ABCA1 a 99.2 2.3E-11 4.9E-16 106.3 6.1 63 52-117 580-648 (885)
370 cd03278 ABC_SMC_barmotin Barmo 99.2 1.5E-11 3.3E-16 90.3 4.2 63 54-117 14-84 (197)
371 COG4138 BtuD ABC-type cobalami 99.2 3.3E-11 7.2E-16 88.5 5.3 50 52-105 14-63 (248)
372 KOG0060 Long-chain acyl-CoA tr 99.2 1.3E-10 2.8E-15 96.9 9.2 78 29-116 431-508 (659)
373 TIGR01187 potA spermidine/putr 99.2 4.7E-11 1E-15 93.7 5.4 47 68-117 1-50 (325)
374 KOG0054 Multidrug resistance-a 99.1 3E-10 6.5E-15 102.3 9.1 74 30-117 517-590 (1381)
375 cd03270 ABC_UvrA_I The excisio 99.1 1.2E-10 2.7E-15 86.9 3.8 32 49-80 7-38 (226)
376 KOG2355 Predicted ABC-type tra 99.1 4.8E-10 1E-14 84.2 6.6 66 30-103 12-77 (291)
377 KOG0064 Peroxisomal long-chain 99.0 7.2E-10 1.6E-14 92.1 7.3 73 31-117 481-553 (728)
378 COG4161 ArtP ABC-type arginine 99.0 5.5E-10 1.2E-14 81.3 5.2 63 32-103 3-65 (242)
379 KOG0927 Predicted transporter 99.0 3.4E-10 7.3E-15 93.8 2.8 61 31-99 389-449 (614)
380 cd03272 ABC_SMC3_euk Eukaryoti 98.9 1.2E-09 2.6E-14 81.6 5.3 33 49-86 14-46 (243)
381 KOG0066 eIF2-interacting prote 98.9 1E-09 2.2E-14 90.0 3.7 83 9-99 563-646 (807)
382 cd03274 ABC_SMC4_euk Eukaryoti 98.9 3.1E-09 6.7E-14 78.9 4.8 31 49-84 16-46 (212)
383 cd01130 VirB11-like_ATPase Typ 98.9 1.8E-09 3.9E-14 78.3 3.2 48 53-103 15-62 (186)
384 KOG0927 Predicted transporter 98.8 6.8E-09 1.5E-13 86.2 6.5 54 30-89 74-127 (614)
385 cd03283 ABC_MutS-like MutS-lik 98.8 8.5E-09 1.8E-13 76.0 4.0 36 50-87 14-49 (199)
386 COG1245 Predicted ATPase, RNas 98.7 4.1E-08 8.9E-13 80.6 6.8 57 30-96 341-397 (591)
387 cd03280 ABC_MutS2 MutS2 homolo 98.7 2.4E-08 5.2E-13 73.1 5.0 33 52-84 16-49 (200)
388 cd03279 ABC_sbcCD SbcCD and ot 98.7 2.2E-08 4.9E-13 73.9 4.5 34 54-87 18-52 (213)
389 cd03273 ABC_SMC2_euk Eukaryoti 98.7 2.6E-08 5.7E-13 75.2 5.0 38 63-102 25-62 (251)
390 cd03282 ABC_MSH4_euk MutS4 hom 98.7 2.4E-08 5.2E-13 73.9 4.6 38 49-86 15-52 (204)
391 PRK06002 fliI flagellum-specif 98.7 5.6E-08 1.2E-12 79.7 7.0 79 31-118 139-229 (450)
392 KOG0065 Pleiotropic drug resis 98.7 4.6E-08 1E-12 87.7 6.6 67 50-116 128-196 (1391)
393 PRK08149 ATP synthase SpaL; Va 98.7 5.1E-08 1.1E-12 79.5 6.2 55 49-104 138-192 (428)
394 PRK07196 fliI flagellum-specif 98.7 2.2E-08 4.8E-13 81.7 4.1 53 49-102 142-194 (434)
395 cd03243 ABC_MutS_homologs The 98.6 3.2E-08 7E-13 72.5 4.3 32 54-85 20-51 (202)
396 TIGR02858 spore_III_AA stage I 98.6 4.2E-08 9.1E-13 75.7 5.0 39 64-105 112-150 (270)
397 KOG0062 ATPase component of AB 98.6 3E-08 6.4E-13 82.1 4.2 49 31-85 80-128 (582)
398 PRK10078 ribose 1,5-bisphospho 98.6 8E-08 1.7E-12 69.5 5.8 36 63-104 2-37 (186)
399 COG2401 ABC-type ATPase fused 98.6 3.4E-08 7.3E-13 80.5 4.0 38 50-87 396-433 (593)
400 PRK09825 idnK D-gluconate kina 98.6 5.2E-08 1.1E-12 70.5 4.4 28 62-89 2-29 (176)
401 PRK07721 fliI flagellum-specif 98.6 5E-08 1.1E-12 79.8 4.8 50 50-103 146-195 (438)
402 PF13555 AAA_29: P-loop contai 98.6 7.6E-08 1.6E-12 58.9 4.2 38 52-89 11-49 (62)
403 cd03240 ABC_Rad50 The catalyti 98.6 7.4E-08 1.6E-12 71.0 4.7 33 56-89 16-52 (204)
404 COG3845 ABC-type uncharacteriz 98.5 2.9E-07 6.3E-12 75.7 7.7 68 29-104 255-322 (501)
405 cd01136 ATPase_flagellum-secre 98.5 1.6E-07 3.5E-12 74.3 6.0 49 49-101 56-104 (326)
406 TIGR00235 udk uridine kinase. 98.5 4.6E-08 9.9E-13 71.9 2.7 29 61-89 4-32 (207)
407 COG4170 SapD ABC-type antimicr 98.5 1.8E-07 4E-12 70.8 5.8 72 30-103 2-74 (330)
408 TIGR00767 rho transcription te 98.5 2.3E-07 5.1E-12 75.2 6.0 55 30-89 129-194 (415)
409 PRK07960 fliI flagellum-specif 98.5 1.7E-07 3.7E-12 76.9 5.2 54 50-104 163-216 (455)
410 PRK05688 fliI flagellum-specif 98.5 1.6E-07 3.6E-12 77.0 4.8 53 49-102 155-207 (451)
411 PRK07594 type III secretion sy 98.5 1.9E-07 4E-12 76.4 5.1 50 49-102 142-191 (433)
412 cd03271 ABC_UvrA_II The excisi 98.5 1.2E-07 2.5E-12 72.9 3.7 34 50-83 8-41 (261)
413 cd03287 ABC_MSH3_euk MutS3 hom 98.5 2.3E-07 4.9E-12 69.7 4.9 37 50-86 18-54 (222)
414 PRK09099 type III secretion sy 98.5 2.7E-07 5.8E-12 75.6 5.7 50 49-102 150-199 (441)
415 PRK00300 gmk guanylate kinase; 98.5 1.4E-07 3.1E-12 68.6 3.6 28 61-88 3-30 (205)
416 TIGR02788 VirB11 P-type DNA tr 98.4 1.8E-07 3.9E-12 73.0 3.7 43 56-101 137-179 (308)
417 TIGR02546 III_secr_ATP type II 98.4 3E-07 6.6E-12 74.9 5.0 50 49-102 132-181 (422)
418 PRK01889 GTPase RsgA; Reviewed 98.4 3.2E-07 6.9E-12 73.2 4.9 60 53-115 185-246 (356)
419 TIGR02322 phosphon_PhnN phosph 98.4 2.6E-07 5.6E-12 66.0 4.0 27 63-89 1-27 (179)
420 PLN02796 D-glycerate 3-kinase 98.4 7.7E-08 1.7E-12 76.5 1.4 54 51-104 80-141 (347)
421 cd03284 ABC_MutS1 MutS1 homolo 98.4 2.4E-07 5.3E-12 69.0 4.0 36 50-86 18-53 (216)
422 TIGR01026 fliI_yscN ATPase Fli 98.4 4E-07 8.6E-12 74.6 5.4 50 49-102 150-199 (440)
423 TIGR03497 FliI_clade2 flagella 98.4 6E-07 1.3E-11 73.0 6.2 51 49-103 124-174 (413)
424 TIGR03498 FliI_clade3 flagella 98.4 4.2E-07 9.1E-12 74.0 5.1 50 50-103 128-177 (418)
425 cd03275 ABC_SMC1_euk Eukaryoti 98.4 2.4E-07 5.2E-12 69.9 3.5 26 64-89 23-48 (247)
426 cd03285 ABC_MSH2_euk MutS2 hom 98.4 5.2E-07 1.1E-11 67.5 5.2 35 50-84 17-51 (222)
427 PF13476 AAA_23: AAA domain; P 98.4 3.5E-07 7.6E-12 65.2 4.1 34 53-87 10-43 (202)
428 PRK09270 nucleoside triphospha 98.4 2.3E-07 5.1E-12 69.3 3.2 33 61-96 31-63 (229)
429 COG1129 MglA ABC-type sugar tr 98.4 8.6E-07 1.9E-11 73.5 6.6 61 52-115 274-340 (500)
430 TIGR03263 guanyl_kin guanylate 98.4 3.5E-07 7.6E-12 65.2 3.7 26 63-88 1-26 (180)
431 TIGR03496 FliI_clade1 flagella 98.3 9.3E-07 2E-11 71.9 5.8 49 50-102 125-173 (411)
432 PRK08972 fliI flagellum-specif 98.3 7.4E-07 1.6E-11 73.0 4.9 40 50-90 150-189 (444)
433 PRK09862 putative ATP-dependen 98.3 4.9E-07 1.1E-11 75.2 3.6 51 50-103 197-247 (506)
434 PRK05922 type III secretion sy 98.3 1.4E-06 3E-11 71.3 6.0 49 50-102 145-193 (434)
435 TIGR00554 panK_bact pantothena 98.3 4.2E-07 9.1E-12 70.8 2.8 36 63-99 62-97 (290)
436 TIGR00606 rad50 rad50. This fa 98.3 1.2E-06 2.7E-11 79.5 5.7 38 64-103 29-70 (1311)
437 cd03276 ABC_SMC6_euk Eukaryoti 98.3 1E-06 2.2E-11 64.7 4.2 35 52-87 11-45 (198)
438 PRK06793 fliI flagellum-specif 98.3 1.8E-06 4E-11 70.6 6.1 50 50-103 144-193 (432)
439 PRK03846 adenylylsulfate kinas 98.2 1E-06 2.2E-11 64.4 3.8 42 61-104 22-63 (198)
440 PRK04863 mukB cell division pr 98.2 1.6E-06 3.5E-11 79.5 5.8 47 53-103 18-64 (1486)
441 PRK06936 type III secretion sy 98.2 1.6E-06 3.5E-11 71.0 5.2 41 49-90 149-189 (439)
442 PRK08472 fliI flagellum-specif 98.2 1.3E-06 2.8E-11 71.4 4.6 50 50-103 145-194 (434)
443 PRK06315 type III secretion sy 98.2 1.4E-06 2.9E-11 71.5 4.6 49 50-101 152-200 (442)
444 TIGR00630 uvra excinuclease AB 98.2 1E-06 2.2E-11 77.8 3.8 30 52-81 622-651 (924)
445 cd02025 PanK Pantothenate kina 98.2 6.7E-07 1.5E-11 66.8 2.4 24 65-88 1-24 (220)
446 cd02023 UMPK Uridine monophosp 98.2 8.4E-07 1.8E-11 64.5 2.7 23 65-87 1-23 (198)
447 PRK00635 excinuclease ABC subu 98.2 1.7E-06 3.8E-11 80.3 4.9 43 51-100 949-991 (1809)
448 cd02026 PRK Phosphoribulokinas 98.2 1.7E-06 3.6E-11 66.8 3.9 25 65-89 1-25 (273)
449 cd00879 Sar1 Sar1 subfamily. 98.2 1.8E-06 3.8E-11 61.7 3.7 33 52-85 9-41 (190)
450 PRK13477 bifunctional pantoate 98.2 2.2E-06 4.8E-11 71.4 4.7 38 49-87 271-308 (512)
451 PRK10416 signal recognition pa 98.2 1.3E-06 2.8E-11 68.8 2.9 41 61-104 112-152 (318)
452 PRK05480 uridine/cytidine kina 98.1 1.5E-06 3.3E-11 63.7 2.9 28 61-88 4-31 (209)
453 TIGR02524 dot_icm_DotB Dot/Icm 98.1 2.6E-06 5.6E-11 68.1 4.4 28 61-88 132-159 (358)
454 KOG0066 eIF2-interacting prote 98.1 2.7E-06 5.9E-11 70.2 4.5 51 30-86 263-313 (807)
455 PRK00635 excinuclease ABC subu 98.1 2.2E-06 4.9E-11 79.5 4.4 31 51-81 609-639 (1809)
456 cd01854 YjeQ_engC YjeQ/EngC. 98.1 4E-06 8.7E-11 64.9 5.2 41 55-99 154-194 (287)
457 PRK00098 GTPase RsgA; Reviewed 98.1 5.8E-06 1.3E-10 64.3 5.9 35 62-99 163-197 (298)
458 PRK06995 flhF flagellar biosyn 98.1 1.3E-06 2.9E-11 72.3 2.3 37 52-88 245-281 (484)
459 PRK06820 type III secretion sy 98.1 4.1E-06 9E-11 68.6 5.0 41 49-90 150-190 (440)
460 cd04155 Arl3 Arl3 subfamily. 98.1 5.5E-06 1.2E-10 58.0 5.0 23 64-86 15-37 (173)
461 smart00382 AAA ATPases associa 98.1 3.6E-06 7.9E-11 55.3 3.9 38 63-102 2-39 (148)
462 TIGR00368 Mg chelatase-related 98.1 1.9E-06 4E-11 71.7 2.9 52 50-104 198-249 (499)
463 cd03281 ABC_MSH5_euk MutS5 hom 98.1 3.6E-06 7.9E-11 62.5 4.2 29 57-85 21-51 (213)
464 cd03227 ABC_Class2 ABC-type Cl 98.1 4.8E-06 1E-10 59.1 4.5 34 54-87 12-45 (162)
465 PRK14721 flhF flagellar biosyn 98.1 2.4E-06 5.1E-11 69.7 3.2 27 60-86 188-214 (420)
466 PRK00349 uvrA excinuclease ABC 98.1 3.2E-06 6.9E-11 74.8 4.2 33 52-84 624-656 (943)
467 PF03193 DUF258: Protein of un 98.1 4E-06 8.6E-11 60.3 4.0 27 62-88 34-60 (161)
468 cd03286 ABC_MSH6_euk MutS6 hom 98.1 6.3E-06 1.4E-10 61.7 4.9 37 50-86 17-53 (218)
469 PLN03046 D-glycerate 3-kinase; 98.1 4.5E-06 9.8E-11 68.3 4.3 41 64-104 213-253 (460)
470 PLN02318 phosphoribulokinase/u 98.1 5.1E-06 1.1E-10 70.4 4.6 36 64-103 66-101 (656)
471 cd01131 PilT Pilus retraction 98.0 4.2E-06 9.1E-11 61.4 3.5 38 65-104 3-40 (198)
472 cd03241 ABC_RecN RecN ATPase i 98.0 6.3E-06 1.4E-10 63.3 4.6 33 52-85 11-43 (276)
473 PLN02165 adenylate isopentenyl 98.0 6.2E-06 1.3E-10 65.5 4.6 45 61-105 41-86 (334)
474 PF13207 AAA_17: AAA domain; P 98.0 4.3E-06 9.3E-11 55.7 3.2 23 65-87 1-23 (121)
475 cd00071 GMPK Guanosine monopho 98.0 3.8E-06 8.3E-11 58.3 2.9 25 65-89 1-25 (137)
476 PRK10751 molybdopterin-guanine 98.0 5E-06 1.1E-10 60.4 3.6 38 65-102 8-45 (173)
477 cd03277 ABC_SMC5_euk Eukaryoti 98.0 1.2E-05 2.6E-10 59.8 5.6 33 54-87 15-47 (213)
478 PRK14722 flhF flagellar biosyn 98.0 3.3E-06 7.3E-11 67.9 2.8 37 51-87 125-161 (374)
479 PRK05541 adenylylsulfate kinas 98.0 4.4E-06 9.6E-11 59.6 3.2 41 60-102 4-44 (176)
480 PRK14723 flhF flagellar biosyn 98.0 3.1E-06 6.8E-11 73.3 2.8 37 52-88 174-210 (767)
481 TIGR02168 SMC_prok_B chromosom 98.0 6.7E-06 1.5E-10 72.4 4.6 31 56-87 17-50 (1179)
482 cd04159 Arl10_like Arl10-like 98.0 5.4E-06 1.2E-10 56.2 2.8 21 66-86 2-22 (159)
483 TIGR01360 aden_kin_iso1 adenyl 98.0 3.5E-06 7.7E-11 60.1 1.9 27 63-89 3-32 (188)
484 cd03242 ABC_RecF RecF is a rec 98.0 8.6E-06 1.9E-10 62.3 4.1 34 53-87 12-45 (270)
485 TIGR00618 sbcc exonuclease Sbc 98.0 2E-05 4.3E-10 70.4 6.8 28 56-84 20-47 (1042)
486 PRK00889 adenylylsulfate kinas 98.0 6.4E-06 1.4E-10 58.7 3.1 29 61-89 2-30 (175)
487 cd04104 p47_IIGP_like p47 (47- 98.0 7.8E-06 1.7E-10 59.6 3.6 25 65-89 3-27 (197)
488 PRK08533 flagellar accessory p 97.9 8.8E-06 1.9E-10 61.1 3.8 32 58-89 19-51 (230)
489 COG3950 Predicted ATP-binding 97.9 6.5E-06 1.4E-10 65.9 3.1 50 51-102 12-61 (440)
490 PF02463 SMC_N: RecF/RecN/SMC 97.9 9.1E-06 2E-10 59.8 3.7 29 55-84 17-45 (220)
491 PRK08927 fliI flagellum-specif 97.9 1.2E-05 2.7E-10 65.9 4.7 36 55-90 150-185 (442)
492 PRK00064 recF recombination pr 97.9 1.1E-05 2.5E-10 64.3 4.4 35 52-87 13-47 (361)
493 cd03239 ABC_SMC_head The struc 97.9 1.1E-05 2.4E-10 58.4 3.9 27 61-87 20-46 (178)
494 PRK10246 exonuclease subunit S 97.9 1.6E-05 3.4E-10 71.1 5.5 33 55-87 19-54 (1047)
495 TIGR00150 HI0065_YjeE ATPase, 97.9 1.1E-05 2.3E-10 56.4 3.5 32 57-88 16-47 (133)
496 PRK10463 hydrogenase nickel in 97.9 1.4E-05 3.1E-10 62.3 4.5 41 58-101 99-139 (290)
497 TIGR01069 mutS2 MutS2 family p 97.9 8.9E-06 1.9E-10 70.7 3.6 32 55-86 313-345 (771)
498 COG1245 Predicted ATPase, RNas 97.9 1E-05 2.3E-10 66.8 3.8 31 60-90 97-127 (591)
499 PF13304 AAA_21: AAA domain; P 97.9 2.3E-06 5.1E-11 61.2 0.0 23 65-87 1-23 (303)
500 PRK07261 topology modulation p 97.9 1.2E-05 2.6E-10 57.7 3.7 24 65-88 2-25 (171)
No 1
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.3e-21 Score=148.93 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=69.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNR- 108 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~- 108 (122)
..++++|+++.|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|. +|+|.+.|++....+
T Consensus 3 ~~i~v~nl~v~y~~-----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 3 PMIEVENLTVSYGN-----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRK 73 (254)
T ss_pred cEEEEeeeEEEECC-----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEcccccccccc
Confidence 56889999998752 3 6999999999999999999999999999999999999994 999999998765443
Q ss_pred -CceEEEEee
Q 033293 109 -RDIVSINLI 117 (122)
Q Consensus 109 -~~i~~v~~~ 117 (122)
.+++||||-
T Consensus 74 ~~~IgYVPQ~ 83 (254)
T COG1121 74 RLRIGYVPQK 83 (254)
T ss_pred CCeEEEcCcc
Confidence 689999994
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.85 E-value=2.2e-21 Score=148.05 Aligned_cols=79 Identities=30% Similarity=0.405 Sum_probs=69.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.|. ++.+++++||++++|++++|+||||||||||||+|+|+++|. +|+|.++|+++..
T Consensus 2 ~L~~~~ls~~y~------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~k 72 (258)
T COG1120 2 MLEVENLSFGYG------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72 (258)
T ss_pred eeEEEEEEEEEC------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHH
Confidence 477888888774 467999999999999999999999999999999999999985 9999999998754
Q ss_pred -CCCceEEEEeee
Q 033293 107 -NRRDIVSINLIK 118 (122)
Q Consensus 107 -~~~~i~~v~~~~ 118 (122)
..+.++||||..
T Consensus 73 elAk~ia~vpQ~~ 85 (258)
T COG1120 73 ELAKKLAYVPQSP 85 (258)
T ss_pred HHhhhEEEeccCC
Confidence 346799999974
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.3e-20 Score=142.64 Aligned_cols=77 Identities=29% Similarity=0.338 Sum_probs=69.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.+.+++++..|.. ..+|+++||++.+||+++|+||||||||||||+|+|+..|. +|+|.++|+++.....+
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGPD 73 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccCCCCCC
Confidence 4667777777642 57999999999999999999999999999999999999995 99999999999778889
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++||.|
T Consensus 74 ~~~vFQ 79 (248)
T COG1116 74 IGYVFQ 79 (248)
T ss_pred EEEEec
Confidence 999987
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.81 E-value=1.4e-19 Score=142.74 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=67.3
Q ss_pred eeeEEeeEEEEEeeeeccccce-eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKK-LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~-il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
..++++|+...|. .. +++++|+.++.||+++|+||||||||||||+|||+..|. +|+|.|+|+++..
T Consensus 2 ~~i~l~~v~K~yg-------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~ 71 (338)
T COG3839 2 AELELKNVRKSFG-------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71 (338)
T ss_pred cEEEEeeeEEEcC-------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCC
Confidence 3567777777653 33 999999999999999999999999999999999999995 9999999998754
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
..|++++|+|-
T Consensus 72 P~~R~iamVFQ~ 83 (338)
T COG3839 72 PEKRGIAMVFQN 83 (338)
T ss_pred hhHCCEEEEeCC
Confidence 46889999873
No 5
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=142.97 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC---C
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG---T 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~---~ 106 (122)
..+++++++..|. +..+++|+|++|++||+++|+||||||||||||+|||+..|+ +|+|.++|+++. .
T Consensus 4 ~~l~i~~v~k~yg------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp 74 (352)
T COG3842 4 PALEIRNVSKSFG------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPP 74 (352)
T ss_pred ceEEEEeeeeecC------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh
Confidence 4577888777663 367999999999999999999999999999999999999995 999999999974 3
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.+|.+++|.|
T Consensus 75 ~kR~ig~VFQ 84 (352)
T COG3842 75 EKRPIGMVFQ 84 (352)
T ss_pred hhcccceeec
Confidence 4678898876
No 6
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.6e-19 Score=131.09 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=66.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCce
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i 111 (122)
++++|+++.+.+- .....+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++....+.+
T Consensus 1 l~~~~l~~~~~~~--~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGG--GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTGPGPDR 75 (220)
T ss_pred CeEEEEEEEcCCC--CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccccCcE
Confidence 3567787766320 00146999999999999999999999999999999999999884 999999999876555679
Q ss_pred EEEEee
Q 033293 112 VSINLI 117 (122)
Q Consensus 112 ~~v~~~ 117 (122)
+|+|+-
T Consensus 76 ~~v~q~ 81 (220)
T cd03293 76 GYVFQQ 81 (220)
T ss_pred EEEecc
Confidence 999863
No 7
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.3e-19 Score=131.19 Aligned_cols=77 Identities=27% Similarity=0.398 Sum_probs=64.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (235)
T cd03261 1 IELRGLTKSFG------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAE 71 (235)
T ss_pred CeEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhh
Confidence 35778877663 246999999999999999999999999999999999999884 9999999987642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 72 ~~~~~~~i~~v~q~ 85 (235)
T cd03261 72 LYRLRRRMGMLFQS 85 (235)
T ss_pred HHHHhcceEEEccC
Confidence 13468898863
No 8
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1e-18 Score=132.56 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=66.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCce
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i 111 (122)
++++++++.+. +..+++++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|+++......+
T Consensus 2 l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 2 LQISHLYADYG------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72 (255)
T ss_pred EEEEEEEEEeC------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCCcE
Confidence 67788887763 246999999999999999999999999999999999999884 999999999875444568
Q ss_pred EEEEee
Q 033293 112 VSINLI 117 (122)
Q Consensus 112 ~~v~~~ 117 (122)
+|+++-
T Consensus 73 ~~v~q~ 78 (255)
T PRK11248 73 GVVFQN 78 (255)
T ss_pred EEEeCC
Confidence 888763
No 9
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.79 E-value=6.8e-19 Score=129.77 Aligned_cols=81 Identities=28% Similarity=0.371 Sum_probs=64.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.+- ...+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~~--~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 75 (218)
T cd03255 1 IELKNLSKTYGGG--GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKE 75 (218)
T ss_pred CeEeeeEEEecCC--CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhH
Confidence 3577888776320 00146999999999999999999999999999999999999884 99999999876421
Q ss_pred -----CCceEEEEee
Q 033293 108 -----RRDIVSINLI 117 (122)
Q Consensus 108 -----~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 76 ~~~~~~~~i~~~~q~ 90 (218)
T cd03255 76 LAAFRRRHIGFVFQS 90 (218)
T ss_pred HHHHHhhcEEEEeec
Confidence 2468998764
No 10
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=8.3e-19 Score=129.04 Aligned_cols=77 Identities=25% Similarity=0.408 Sum_probs=64.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++++++.+. ++.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03259 1 LELKGLSKTYG------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPER 71 (213)
T ss_pred CeeeeeEEEeC------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhh
Confidence 35677777663 246999999999999999999999999999999999999884 9999999987642 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 72 ~~i~~v~q~ 80 (213)
T cd03259 72 RNIGMVFQD 80 (213)
T ss_pred ccEEEEcCc
Confidence 568998863
No 11
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.79 E-value=6.4e-19 Score=129.87 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=65.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.+ ..+.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 74 (216)
T TIGR00960 2 IRFEQVSKAYPG----GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGRE 74 (216)
T ss_pred eEEEEEEEEecC----CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhH
Confidence 678888887642 1135999999999999999999999999999999999999884 9999999987632
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 75 ~~~~~~~i~~~~q~ 88 (216)
T TIGR00960 75 IPFLRRHIGMVFQD 88 (216)
T ss_pred HHHHHHhceEEecC
Confidence 12468898763
No 12
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.5e-18 Score=129.85 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=66.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++++++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 2 SIEVRNVSKRFG------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72 (239)
T ss_pred EEEEEeEEEEEC------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcc
Confidence 477888888764 246999999999999999999999999999999999999884 9999999987632 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 73 ~~~i~~v~q~ 82 (239)
T cd03296 73 ERNVGFVFQH 82 (239)
T ss_pred ccceEEEecC
Confidence 3568998763
No 13
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.78 E-value=1.5e-18 Score=135.01 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=68.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~~------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~ 76 (306)
T PRK13537 6 APIDFRNVEKRYG------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRAR 76 (306)
T ss_pred ceEEEEeEEEEEC------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchH
Confidence 4688889888774 256999999999999999999999999999999999999984 9999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~ig~v~q~ 88 (306)
T PRK13537 77 HARQRVGVVPQF 88 (306)
T ss_pred HHHhcEEEEecc
Confidence 24579999864
No 14
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.78 E-value=1.4e-18 Score=128.20 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=64.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. +..+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (222)
T cd03224 1 LEVENLNAGYG------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHE 71 (222)
T ss_pred CEEeeEEeecC------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHH
Confidence 35677777653 246999999999999999999999999999999999999884 99999999876431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 72 ~~~~~i~~~~q~ 83 (222)
T cd03224 72 RARAGIGYVPEG 83 (222)
T ss_pred HHhcCeEEeccc
Confidence 3458898764
No 15
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=132.29 Aligned_cols=79 Identities=25% Similarity=0.295 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.+. +..+|+++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...++
T Consensus 11 ~~l~i~~l~~~~~------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 81 (257)
T PRK11247 11 TPLLLNAVSKRYG------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAEARE 81 (257)
T ss_pred CcEEEEEEEEEEC------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHHhhC
Confidence 4588999988774 246999999999999999999999999999999999999884 9999999987654456
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+++-
T Consensus 82 ~i~~v~q~ 89 (257)
T PRK11247 82 DTRLMFQD 89 (257)
T ss_pred ceEEEecC
Confidence 78998764
No 16
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=130.83 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=67.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..+++++++..|. ..++|++|||++++||+++|+|+||+||||||++|+|+.++. +|+|.|+|+++...
T Consensus 2 ~mL~v~~l~~~YG------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~ 72 (237)
T COG0410 2 PMLEVENLSAGYG------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPP 72 (237)
T ss_pred CceeEEeEeeccc------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCH
Confidence 4578888888764 357999999999999999999999999999999999999984 99999999998643
Q ss_pred ----CCceEEEEe
Q 033293 108 ----RRDIVSINL 116 (122)
Q Consensus 108 ----~~~i~~v~~ 116 (122)
+.-++|||+
T Consensus 73 ~~r~r~Gi~~VPe 85 (237)
T COG0410 73 HERARLGIAYVPE 85 (237)
T ss_pred HHHHhCCeEeCcc
Confidence 346899986
No 17
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.78 E-value=1.6e-18 Score=127.52 Aligned_cols=78 Identities=23% Similarity=0.330 Sum_probs=65.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+. .+..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-----~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (214)
T TIGR02673 2 IEFHNVSKAYP-----GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQ 73 (214)
T ss_pred EEEEeeeEEeC-----CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 67788888762 1246999999999999999999999999999999999999884 9999999998642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 74 ~~~~~~~i~~~~q~ 87 (214)
T TIGR02673 74 LPLLRRRIGVVFQD 87 (214)
T ss_pred HHHHHhheEEEecC
Confidence 13468888763
No 18
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.78 E-value=1.9e-18 Score=133.99 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=66.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 4 ~i~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 4 AIDLVGVSKSYG------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARL 74 (303)
T ss_pred EEEEEeEEEEeC------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHH
Confidence 577888888763 246999999999999999999999999999999999999884 99999999876422
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 75 ~~~~i~~v~q~ 85 (303)
T TIGR01288 75 ARVAIGVVPQF 85 (303)
T ss_pred HhhcEEEEecc
Confidence 4568999874
No 19
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.78 E-value=2.1e-18 Score=126.70 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=64.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++|+++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+
T Consensus 1 i~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (213)
T cd03301 1 VELENVTKRFG------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKD 71 (213)
T ss_pred CEEEeeEEEEC------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccc
Confidence 35677777663 246999999999999999999999999999999999999884 9999999988642 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 72 ~~i~~~~q~ 80 (213)
T cd03301 72 RDIAMVFQN 80 (213)
T ss_pred ceEEEEecC
Confidence 468898764
No 20
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=2.4e-18 Score=135.84 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|++..+. +..+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 40 ~~i~i~nl~k~y~------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~ 110 (340)
T PRK13536 40 VAIDLAGVSKSYG------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARAR 110 (340)
T ss_pred eeEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchH
Confidence 4588888888764 346999999999999999999999999999999999999984 9999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 111 ~~~~~ig~v~q~ 122 (340)
T PRK13536 111 LARARIGVVPQF 122 (340)
T ss_pred HHhccEEEEeCC
Confidence 24569999864
No 21
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.77 E-value=2.1e-18 Score=126.59 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=63.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+. ...+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (213)
T cd03262 1 IEIKNLHKSFG------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNI 71 (213)
T ss_pred CEEEEEEEEEC------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhH
Confidence 35677877763 246999999999999999999999999999999999999884 9999999988632
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 72 ~~~~~~i~~~~q 83 (213)
T cd03262 72 NELRQKVGMVFQ 83 (213)
T ss_pred HHHHhcceEEec
Confidence 1346888876
No 22
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.5e-18 Score=128.30 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=63.7
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++|+++.+. ...++++++|++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (220)
T cd03265 1 IEVENLVKKYG------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREV 71 (220)
T ss_pred CEEEEEEEEEC------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHH
Confidence 35677777663 246999999999999999999999999999999999999884 9999999987642 1
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 72 ~~~i~~~~q~ 81 (220)
T cd03265 72 RRRIGIVFQD 81 (220)
T ss_pred hhcEEEecCC
Confidence 3468888763
No 23
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.77 E-value=1.8e-18 Score=127.61 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=64.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++++++.+.+ ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~~----~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKK----GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAA 73 (220)
T ss_pred CEEEeeEEEeCC----CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHH
Confidence 356777776631 1156999999999999999999999999999999999999884 9999999988642 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 74 ~~~i~~v~q 82 (220)
T cd03263 74 RQSLGYCPQ 82 (220)
T ss_pred hhhEEEecC
Confidence 345888876
No 24
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.77 E-value=2.5e-18 Score=127.25 Aligned_cols=81 Identities=26% Similarity=0.327 Sum_probs=65.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+. .....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~--~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (228)
T cd03257 2 LEVKNLSVSFPTG--GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRL 76 (228)
T ss_pred eEEEeeeEeccCC--CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhh
Confidence 5678888876420 00126999999999999999999999999999999999999884 9999999988642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 ~~~~~~~i~~~~q~ 90 (228)
T cd03257 77 RKIRRKEIQMVFQD 90 (228)
T ss_pred HHHhhccEEEEecC
Confidence 13468898764
No 25
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.8e-18 Score=126.01 Aligned_cols=84 Identities=26% Similarity=0.456 Sum_probs=68.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++|+|+++.+... +.+..+|+++||++++|++++|+||||||||||+++|+|+++|....+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~--~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKG--RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccC--CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 47899999998742 234579999999999999999999999999999999999998311159999999998643
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 81 ~~~~i~~~~q 90 (202)
T cd03233 81 YPGEIIYVSE 90 (202)
T ss_pred hcceEEEEec
Confidence 2446888876
No 26
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.6e-18 Score=127.40 Aligned_cols=82 Identities=24% Similarity=0.292 Sum_probs=66.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+.+- .....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~~--~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 5 LLQCDNLCKRYQEG--SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSA 79 (233)
T ss_pred eEEEEeEEEEcCCC--CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHH
Confidence 47888988876420 00146999999999999999999999999999999999999884 99999999986431
Q ss_pred ------CCceEEEEee
Q 033293 108 ------RRDIVSINLI 117 (122)
Q Consensus 108 ------~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 80 ~~~~~~~~~i~~v~q~ 95 (233)
T PRK11629 80 AKAELRNQKLGFIYQF 95 (233)
T ss_pred HHHHHHhccEEEEecC
Confidence 2468999863
No 27
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.77 E-value=2e-18 Score=128.66 Aligned_cols=77 Identities=23% Similarity=0.319 Sum_probs=64.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (236)
T cd03219 1 LEVRGLTKRFG------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHE 71 (236)
T ss_pred CeeeeeEEEEC------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHH
Confidence 35677777663 246999999999999999999999999999999999999884 99999999986431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
+..++|+|+-
T Consensus 72 ~~~~~i~~v~q~ 83 (236)
T cd03219 72 IARLGIGRTFQI 83 (236)
T ss_pred HHhcCEEEEecc
Confidence 2358898864
No 28
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.9e-18 Score=128.70 Aligned_cols=81 Identities=26% Similarity=0.300 Sum_probs=65.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+.+. .....+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 2 i~~~~l~~~~~~~--~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (233)
T cd03258 2 IELKNVSKVFGDT--GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKE 76 (233)
T ss_pred eEEecceEEccCC--CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHH
Confidence 5678888876420 00126999999999999999999999999999999999999884 99999999986431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 77 ~~~~~~~i~~~~q~ 90 (233)
T cd03258 77 LRKARRRIGMIFQH 90 (233)
T ss_pred HHHHHhheEEEccC
Confidence 3468888764
No 29
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1.2e-18 Score=130.01 Aligned_cols=77 Identities=27% Similarity=0.455 Sum_probs=65.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+...|. ...+|++||+++.+||+++|+||||||||||||||.+|..++ +|+|.++|.++..
T Consensus 2 mi~i~~l~K~fg------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 2 MIEIKNLSKSFG------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDI 72 (240)
T ss_pred eEEEEeeeEEeC------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhH
Confidence 467788887764 367999999999999999999999999999999999999985 9999999976532
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.+++|.|
T Consensus 73 ~~~R~~vGmVFQ 84 (240)
T COG1126 73 LKLRRKVGMVFQ 84 (240)
T ss_pred HHHHHhcCeecc
Confidence 2456777755
No 30
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.5e-18 Score=127.37 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=63.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-CCCc
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-NRRD 110 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-~~~~ 110 (122)
++++++++.+. ++.+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .++.
T Consensus 1 l~~~~l~~~~~------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (210)
T cd03269 1 LEVENVTKRFG------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDIAARNR 71 (210)
T ss_pred CEEEEEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhHHHHcc
Confidence 35677777653 246999999999999999999999999999999999999884 9999999987532 2356
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 72 i~~~~q 77 (210)
T cd03269 72 IGYLPE 77 (210)
T ss_pred EEEecc
Confidence 888875
No 31
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.77 E-value=2.1e-18 Score=126.66 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=64.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.+ .+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 72 (214)
T cd03292 1 IEFINVTKTYPN-----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRA 72 (214)
T ss_pred CEEEEEEEEeCC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHH
Confidence 356777776631 246999999999999999999999999999999999999884 99999999876431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 73 ~~~~~~~i~~v~q~ 86 (214)
T cd03292 73 IPYLRRKIGVVFQD 86 (214)
T ss_pred HHHHHHheEEEecC
Confidence 2458888763
No 32
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-18 Score=131.51 Aligned_cols=79 Identities=27% Similarity=0.357 Sum_probs=67.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
+.+++++++..|. .++++|++|+|.|++||+++|+||||||||||||+|+|+..+. +|+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp-----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYP-----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecC-----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccch
Confidence 4688888888774 2578999999999999999999999999999999999999985 9999999976532
Q ss_pred -----CCCceEEEEe
Q 033293 107 -----NRRDIVSINL 116 (122)
Q Consensus 107 -----~~~~i~~v~~ 116 (122)
.+++++|+.|
T Consensus 74 k~lr~~r~~iGmIfQ 88 (258)
T COG3638 74 KELRKLRRDIGMIFQ 88 (258)
T ss_pred HHHHHHHHhceeEec
Confidence 2567888854
No 33
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=1.5e-18 Score=134.57 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=66.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.+++++++..+.. .+.+|++|||++++|+++||+||||||||||+++|+|++.|. +|+|.++|.+...
T Consensus 4 ~i~~~~l~k~~~~-----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 4 VIEVRNLTKKYGG-----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAK 75 (293)
T ss_pred eeeecceEEEeCC-----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHH
Confidence 3566777776531 367999999999999999999999999999999999999994 9999999988653
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 76 ~~~~igy~~~~ 86 (293)
T COG1131 76 VRRRIGYVPQE 86 (293)
T ss_pred HHhheEEEccC
Confidence 24679999863
No 34
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.77 E-value=1.4e-18 Score=127.28 Aligned_cols=76 Identities=28% Similarity=0.391 Sum_probs=62.5
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCCce
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRRDI 111 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~~i 111 (122)
++|+++.+.+ ...+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++.. .++.+
T Consensus 2 ~~~l~~~~~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 2 IENISFSYKK-----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSI 73 (205)
T ss_pred cccEEEEeCC-----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcce
Confidence 4566665531 146999999999999999999999999999999999999884 9999999987632 23468
Q ss_pred EEEEee
Q 033293 112 VSINLI 117 (122)
Q Consensus 112 ~~v~~~ 117 (122)
+|+++-
T Consensus 74 ~~~~q~ 79 (205)
T cd03226 74 GYVMQD 79 (205)
T ss_pred EEEecC
Confidence 998874
No 35
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=5.7e-19 Score=129.93 Aligned_cols=75 Identities=29% Similarity=0.448 Sum_probs=62.3
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEE
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVS 113 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~ 113 (122)
++|+++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...++.++|
T Consensus 2 ~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 2 VEDLTVSYG------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred cccceeEEC------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHHHHhheEE
Confidence 456666553 246999999999999999999999999999999999999884 99999999865433456888
Q ss_pred EEee
Q 033293 114 INLI 117 (122)
Q Consensus 114 v~~~ 117 (122)
+|+-
T Consensus 73 v~q~ 76 (213)
T cd03235 73 VPQR 76 (213)
T ss_pred eccc
Confidence 8763
No 36
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.77 E-value=2.1e-18 Score=129.57 Aligned_cols=81 Identities=30% Similarity=0.328 Sum_probs=65.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++...+..- .....+|++++|.|++||+++|+|||||||||||++|.|+..|. +|.+.++|+++..
T Consensus 2 i~~~~v~k~y~~~--~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~ 76 (226)
T COG1136 2 IELKNVSKIYGLG--GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKE 76 (226)
T ss_pred cEEeeeEEEeccC--CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHH
Confidence 4567777766421 11257999999999999999999999999999999999999994 9999999987642
Q ss_pred ----CCCceEEEEee
Q 033293 107 ----NRRDIVSINLI 117 (122)
Q Consensus 107 ----~~~~i~~v~~~ 117 (122)
+++.++||.|-
T Consensus 77 ~~~~R~~~iGfvFQ~ 91 (226)
T COG1136 77 LAKLRRKKIGFVFQN 91 (226)
T ss_pred HHHHHHHhEEEECcc
Confidence 24569999763
No 37
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.77 E-value=4e-18 Score=130.02 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=66.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+. ++.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 6 NLVDMRGVSFTRG------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSR 76 (269)
T ss_pred ceEEEeCeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccCh
Confidence 4588899988763 246999999999999999999999999999999999999884 9999999987642
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~~~~~i~~v~q~ 92 (269)
T PRK11831 77 SRLYTVRKRMSMLFQS 92 (269)
T ss_pred hhHHHHhhcEEEEecc
Confidence 13458898763
No 38
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=2.6e-18 Score=127.74 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=63.7
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+. ++.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03218 1 LRAENLSKRYG------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHK 71 (232)
T ss_pred CeEEEEEEEeC------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhH
Confidence 35677777663 246999999999999999999999999999999999999884 99999999875321
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 72 ~~~~~i~~~~q~ 83 (232)
T cd03218 72 RARLGIGYLPQE 83 (232)
T ss_pred HHhccEEEecCC
Confidence 2358888763
No 39
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=5.2e-18 Score=122.19 Aligned_cols=76 Identities=32% Similarity=0.416 Sum_probs=63.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+. .+.++++++|++++|++++|+||||||||||+++|+|+++| .+|+|.++|+++...
T Consensus 1 i~~~~l~~~~~------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~ 71 (178)
T cd03229 1 LELKNVSKRYG------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGEDLTDLEDEL 71 (178)
T ss_pred CEEEEEEEEEC------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCEEccccchhH
Confidence 35677777663 24699999999999999999999999999999999999988 499999999876421
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 72 ~~~~~~i~~~~q 83 (178)
T cd03229 72 PPLRRRIGMVFQ 83 (178)
T ss_pred HHHhhcEEEEec
Confidence 356888875
No 40
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.7e-18 Score=128.16 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=66.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+. +..+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 ~~l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 2 NEIEFKEVSYSSF------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDV 72 (241)
T ss_pred ceEEEEeEEEEeC------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCh
Confidence 3577888888763 246999999999999999999999999999999999999884 9999999987632
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 73 ~~~~~~i~~~~q~ 85 (241)
T PRK14250 73 IDLRRKIGMVFQQ 85 (241)
T ss_pred HHhhhcEEEEecC
Confidence 13468888763
No 41
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.77 E-value=3.1e-18 Score=125.24 Aligned_cols=76 Identities=20% Similarity=0.371 Sum_probs=64.7
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. +..+|+++||++.+|++++|+||||||||||+++|+|+.+|. +|+|.++|+++...
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 72 (200)
T PRK13540 2 LDVIELDFDYH------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE---KGEILFERQSIKKDLCTY 72 (200)
T ss_pred EEEEEEEEEeC------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeeEEECCCccccCHHHH
Confidence 67788888764 246999999999999999999999999999999999999884 99999999876421
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+|+
T Consensus 73 ~~~i~~~~q 81 (200)
T PRK13540 73 QKQLCFVGH 81 (200)
T ss_pred HhheEEecc
Confidence 346888875
No 42
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.77 E-value=3.1e-18 Score=127.32 Aligned_cols=77 Identities=23% Similarity=0.358 Sum_probs=64.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (230)
T TIGR03410 1 LEVSNLNVYYG------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHE 71 (230)
T ss_pred CEEEeEEEEeC------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHH
Confidence 35778877664 246999999999999999999999999999999999999884 99999999886421
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 72 ~~~~~i~~~~q~ 83 (230)
T TIGR03410 72 RARAGIAYVPQG 83 (230)
T ss_pred HHHhCeEEeccC
Confidence 3468888763
No 43
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.77 E-value=5.2e-18 Score=120.96 Aligned_cols=78 Identities=22% Similarity=0.375 Sum_probs=65.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+. +..++++++|++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 l~~~~l~~~~~------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~v~~~g~~~~~~~~~~ 71 (163)
T cd03216 1 LELRGITKRFG------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVSFASPRD 71 (163)
T ss_pred CEEEEEEEEEC------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCcCCHHH
Confidence 35778887764 246999999999999999999999999999999999999884 9999999988643
Q ss_pred -CCCceEEEEeee
Q 033293 107 -NRRDIVSINLIK 118 (122)
Q Consensus 107 -~~~~i~~v~~~~ 118 (122)
.++.++|++++|
T Consensus 72 ~~~~~i~~~~qLS 84 (163)
T cd03216 72 ARRAGIAMVYQLS 84 (163)
T ss_pred HHhcCeEEEEecC
Confidence 134688988643
No 44
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.77 E-value=3.8e-18 Score=127.52 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=64.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 2 LEVAGLSFAYG------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAA 72 (236)
T ss_pred EEEEeeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhh
Confidence 56788887763 246999999999999999999999999999999999999884 99999999876321
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
.+.++|+|+
T Consensus 73 ~~~i~~~~q 81 (236)
T TIGR03864 73 LARLGVVFQ 81 (236)
T ss_pred hhhEEEeCC
Confidence 246888876
No 45
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=3.2e-18 Score=126.75 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=65.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLG-----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecC-----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhH
Confidence 567888877621 246999999999999999999999999999999999999884 9999999987642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 74 ~~~~~~~i~~~~q~ 87 (222)
T PRK10908 74 VPFLRRQIGMIFQD 87 (222)
T ss_pred HHHHHhheEEEecC
Confidence 13468898763
No 46
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.76 E-value=1.5e-18 Score=129.76 Aligned_cols=77 Identities=30% Similarity=0.376 Sum_probs=63.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+. .+..+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-----~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (243)
T TIGR02315 2 LEVENLSKVYP-----NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKK 73 (243)
T ss_pred eEEEeeeeecC-----CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHH
Confidence 56778777653 1246999999999999999999999999999999999999884 9999999988642
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 74 ~~~~~~~i~~v~q 86 (243)
T TIGR02315 74 LRKLRRRIGMIFQ 86 (243)
T ss_pred HHHHHhheEEEcC
Confidence 1345888875
No 47
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=5.3e-18 Score=121.64 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=64.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++++++.+. ...++++++|++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (173)
T cd03230 1 IEVRNLSKRYG------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKEPEEV 71 (173)
T ss_pred CEEEEEEEEEC------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccchHhh
Confidence 35677777663 246999999999999999999999999999999999999884 9999999987642 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 72 ~~~i~~~~q~ 81 (173)
T cd03230 72 KRRIGYLPEE 81 (173)
T ss_pred hccEEEEecC
Confidence 3568888763
No 48
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.2e-18 Score=127.77 Aligned_cols=76 Identities=33% Similarity=0.438 Sum_probs=63.0
Q ss_pred EEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-----
Q 033293 33 VWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN----- 107 (122)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~----- 107 (122)
+++|+++.+.+ +..+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 2 ~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 2 EVENLSKTYPN-----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKAL 73 (241)
T ss_pred EEeeEEEecCC-----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHH
Confidence 56777776531 156999999999999999999999999999999999999884 99999999876431
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+|+
T Consensus 74 ~~~~~~i~~~~q 85 (241)
T cd03256 74 RQLRRQIGMIFQ 85 (241)
T ss_pred HHHHhccEEEcc
Confidence 245888876
No 49
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.76 E-value=4.9e-18 Score=134.36 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=67.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.|.. ......+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 I~~~~lsk~y~~--~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~ 76 (343)
T TIGR02314 2 IKLSNITKVFHQ--GTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSE 76 (343)
T ss_pred EEEEEEEEEECC--CCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHH
Confidence 678899888742 011246999999999999999999999999999999999999984 9999999998743
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 l~~~r~~Ig~v~Q~ 90 (343)
T TIGR02314 77 LTKARRQIGMIFQH 90 (343)
T ss_pred HHHHhcCEEEEECC
Confidence 14579999864
No 50
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.76 E-value=4.9e-18 Score=127.09 Aligned_cols=76 Identities=21% Similarity=0.330 Sum_probs=64.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+. ++.+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 l~~~~l~~~~~------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (240)
T PRK09493 2 IEFKNVSKHFG------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDE 72 (240)
T ss_pred EEEEeEEEEEC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhH
Confidence 56788888763 246999999999999999999999999999999999999884 99999999886421
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 73 ~~~~~~i~~~~q 84 (240)
T PRK09493 73 RLIRQEAGMVFQ 84 (240)
T ss_pred HHHhhceEEEec
Confidence 345888876
No 51
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.76 E-value=3e-18 Score=127.15 Aligned_cols=77 Identities=27% Similarity=0.283 Sum_probs=63.7
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc-----CCCCccccEEEECCEECCC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL-----SKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~-----~~~~~~~G~i~~~g~~~~~ 106 (122)
++++|+++.+. .+.+|+++||++.+|++++|+||||||||||+++|+|++ +| .+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~ 71 (227)
T cd03260 1 IELRDLNVYYG------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYD 71 (227)
T ss_pred CEEEEEEEEcC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhh
Confidence 35677777653 246999999999999999999999999999999999998 66 49999999988632
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 72 ~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 72 LDVDVLELRRRVGMVFQK 89 (227)
T ss_pred cchHHHHHHhhEEEEecC
Confidence 13468898763
No 52
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=2.4e-18 Score=126.27 Aligned_cols=77 Identities=25% Similarity=0.363 Sum_probs=62.6
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-----C
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-----R 108 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-----~ 108 (122)
++++++.+.+ ....+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++... +
T Consensus 2 ~~~l~~~~~~----~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 2 LKNLSFSYPD----GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred ceeEEEecCC----CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHH
Confidence 4566665531 1146999999999999999999999999999999999999884 99999999876432 3
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 75 ~~i~~~~q~ 83 (211)
T cd03225 75 RKVGLVFQN 83 (211)
T ss_pred hhceEEecC
Confidence 468898874
No 53
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.76 E-value=5.5e-18 Score=125.81 Aligned_cols=83 Identities=23% Similarity=0.239 Sum_probs=66.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++++++.+.+. .....+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~~~~~--~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 5 NIVEVHHLKKSVGQG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79 (228)
T ss_pred ceEEEeeeEEEccCC--CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCH
Confidence 457889998876420 00125999999999999999999999999999999999999884 99999999886431
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
.+.++|+++-
T Consensus 80 ~~~~~~~~~~i~~~~q~ 96 (228)
T PRK10584 80 EARAKLRAKHVGFVFQS 96 (228)
T ss_pred HHHHHHHhheEEEEEcc
Confidence 2468888763
No 54
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.76 E-value=4.3e-18 Score=135.04 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+. ...+|+++||++++|++++|+|||||||||||++|+|+.+|. +|+|.++|+++..
T Consensus 3 ~~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 3 PYLSIDNIRKRFG------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPP 73 (353)
T ss_pred cEEEEEEEEEEeC------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 4578889888774 246899999999999999999999999999999999999984 9999999998643
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|++|-
T Consensus 74 ~~r~ig~v~Q~ 84 (353)
T TIGR03265 74 QKRDYGIVFQS 84 (353)
T ss_pred HHCCEEEEeCC
Confidence 34679999863
No 55
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.76 E-value=3.6e-18 Score=127.08 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=66.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+. ++.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 6 ~~i~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 6 PLLQLQNVGYLAG------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKP 76 (225)
T ss_pred ceEEEeccEEeeC------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEcCcCCH
Confidence 3578888888763 346999999999999999999999999999999999999884 9999999987643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 ~~~~~~i~~~~q~ 89 (225)
T PRK10247 77 EIYRQQVSYCAQT 89 (225)
T ss_pred HHHHhccEEEecc
Confidence 13468888764
No 56
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=3.8e-18 Score=127.77 Aligned_cols=78 Identities=18% Similarity=0.371 Sum_probs=65.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+. ++.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 3 TLTAKNLAKAYK------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLH 73 (241)
T ss_pred eEEEeCcEEEeC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 577888888763 246999999999999999999999999999999999999884 9999999988643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 74 ~~~~~~i~~~~q~ 86 (241)
T PRK10895 74 ARARRGIGYLPQE 86 (241)
T ss_pred HHHHhCeEEeccC
Confidence 13468888763
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5e-18 Score=130.82 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=67.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+... ....+.+|+++||+|.+|+++||+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 ~l~~~~l~~~y~~~-~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13637 2 SIKIENLTHIYMEG-TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVK 77 (287)
T ss_pred EEEEEEEEEECCCC-CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCcc
Confidence 37788888876420 001246999999999999999999999999999999999999984 99999999987431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 78 ~~~~~~~ig~v~q~ 91 (287)
T PRK13637 78 LSDIRKKVGLVFQY 91 (287)
T ss_pred HHHHhhceEEEecC
Confidence 3568999874
No 58
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.76 E-value=3.3e-18 Score=126.11 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=65.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++|+++.+.+. .....+++++||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~--~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 76 (218)
T cd03266 2 ITADALTKRFRDV--KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEA 76 (218)
T ss_pred eEEEEEEEecCCC--CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHH
Confidence 5678888876420 00126999999999999999999999999999999999999884 9999999988643 1
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 77 ~~~i~~~~q~ 86 (218)
T cd03266 77 RRRLGFVSDS 86 (218)
T ss_pred HhhEEEecCC
Confidence 3468888764
No 59
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.76 E-value=4.7e-18 Score=127.77 Aligned_cols=80 Identities=24% Similarity=0.285 Sum_probs=65.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC---
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~--- 106 (122)
++++++++.+. +..+++++||++++|++++|+|+||||||||+++|+|+++|. ...+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYG------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEEC------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 56788887763 246999999999999999999999999999999999999862 1128999999998642
Q ss_pred ----CCCceEEEEee
Q 033293 107 ----NRRDIVSINLI 117 (122)
Q Consensus 107 ----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 76 ~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 76 DVVELRRRVGMVFQK 90 (247)
T ss_pred chHHHHhheEEEecC
Confidence 13468999863
No 60
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.76 E-value=5.4e-18 Score=125.22 Aligned_cols=81 Identities=27% Similarity=0.330 Sum_probs=65.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.+- .....+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 2 l~~~~v~~~~~~~--~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (221)
T TIGR02211 2 LKCENLGKRYQEG--KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNE 76 (221)
T ss_pred EEEEeeeEEccCC--CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhH
Confidence 5678888776420 11146999999999999999999999999999999999999884 99999999886421
Q ss_pred -----CCceEEEEee
Q 033293 108 -----RRDIVSINLI 117 (122)
Q Consensus 108 -----~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 77 ~~~~~~~~i~~v~q~ 91 (221)
T TIGR02211 77 RAKLRNKKLGFIYQF 91 (221)
T ss_pred HHHHHHhcEEEEecc
Confidence 1468999864
No 61
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5.9e-18 Score=129.60 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=67.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+.. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 4 ~l~~~~l~~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 75 (274)
T PRK13647 4 IIEVEDLHFRYKD-----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEK 75 (274)
T ss_pred eEEEEEEEEEeCC-----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 5788898887631 246999999999999999999999999999999999999884 99999999986431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 76 ~~~~~i~~v~q~ 87 (274)
T PRK13647 76 WVRSKVGLVFQD 87 (274)
T ss_pred HHHhhEEEEecC
Confidence 3468999874
No 62
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.2e-18 Score=135.19 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=67.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++++++.+. ....+|+++||++++|++++|+|||||||||||++|+|+.+|. +|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~~-----~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYD-----GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeC-----CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHH
Confidence 478888888762 1356999999999999999999999999999999999999984 9999999998643 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 75 ~r~ig~v~Q~ 84 (356)
T PRK11650 75 DRDIAMVFQN 84 (356)
T ss_pred HCCEEEEeCC
Confidence 4679999873
No 63
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.76 E-value=2.9e-18 Score=125.70 Aligned_cols=77 Identities=19% Similarity=0.365 Sum_probs=64.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++++++.+. ...+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+
T Consensus 1 l~~~~l~~~~~------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 71 (208)
T cd03268 1 LKTNDLTKTYG------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEAL 71 (208)
T ss_pred CEEEEEEEEEC------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHH
Confidence 35677777663 246999999999999999999999999999999999999884 9999999987532 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 72 ~~i~~~~q~ 80 (208)
T cd03268 72 RRIGALIEA 80 (208)
T ss_pred hhEEEecCC
Confidence 468888763
No 64
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4.4e-18 Score=131.01 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=67.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+..- ......+|+++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~-~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 2 TIRFDNVSYTYQKG-TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKD 77 (286)
T ss_pred EEEEEEEEEEECCC-CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 37788998887420 001236999999999999999999999999999999999999984 9999999998642
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 78 ~~~~~~~~~ig~v~q~ 93 (286)
T PRK13646 78 KYIRPVRKRIGMVFQF 93 (286)
T ss_pred chHHHHHhheEEEecC
Confidence 13468999874
No 65
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=5e-18 Score=126.84 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=65.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+. ...+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 75 (237)
T PRK11614 5 MLSFDKVSAHYG------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTA 75 (237)
T ss_pred EEEEEeEEEeeC------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHH
Confidence 578888888763 246999999999999999999999999999999999999884 99999999986431
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 76 ~~~~~~i~~~~q 87 (237)
T PRK11614 76 KIMREAVAIVPE 87 (237)
T ss_pred HHHHhCEEEecc
Confidence 345888876
No 66
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3.5e-18 Score=127.99 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=65.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+. .+.+|+++||.+++|++++|+||||||||||+++|+|+.+|. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 2 SIQLNGINCFYG------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EEEEEeeEEEEC------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccccc
Confidence 467888888764 246999999999999999999999999999999999999884 9999999987520
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 73 ~~~~~~~~~~~i~~~~q~ 90 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQ 90 (242)
T ss_pred chhhHHHHHhheEEEecC
Confidence 13468898863
No 67
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6e-18 Score=134.16 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+. +..+|+++||++++|++++|+|||||||||||++|+|+.+|. +|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 5 NFVVLKNITKRFG------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSI 75 (351)
T ss_pred cEEEEEeEEEEEC------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCH
Confidence 4688999988774 246899999999999999999999999999999999999984 9999999998643
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++||+|
T Consensus 76 ~~r~ig~vfQ 85 (351)
T PRK11432 76 QQRDICMVFQ 85 (351)
T ss_pred HHCCEEEEeC
Confidence 2467999986
No 68
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=5.4e-18 Score=134.45 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=66.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++++++.+. ...+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 2 ~L~i~~l~~~~~------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 2 SIEIANIKKSFG------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHAR 72 (353)
T ss_pred EEEEEEEEEEeC------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 477888888764 246999999999999999999999999999999999999884 9999999998643 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|++|-
T Consensus 73 ~r~i~~v~Q~ 82 (353)
T PRK10851 73 DRKVGFVFQH 82 (353)
T ss_pred HCCEEEEecC
Confidence 3579999873
No 69
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.76 E-value=5.5e-18 Score=131.37 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 ~l~~~~l~~~~~------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 2 SIRVSSLTKLYG------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKE 72 (301)
T ss_pred EEEEEEEEEEEC------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHH
Confidence 467888888764 356999999999999999999999999999999999999884 99999999886432
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 73 ~~~~ig~~~q~ 83 (301)
T TIGR03522 73 VQRNIGYLPEH 83 (301)
T ss_pred HHhceEEecCC
Confidence 3468998863
No 70
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-18 Score=130.78 Aligned_cols=77 Identities=22% Similarity=0.296 Sum_probs=65.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+. ++.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 2 LATSDLWFRYQ------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred eEEEEEEEEcC------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCH
Confidence 67788888763 246999999999999999999999999999999999999884 9999999998631
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 73 ~~~~~~i~~v~q~ 85 (271)
T PRK13638 73 LALRQQVATVFQD 85 (271)
T ss_pred HHHHhheEEEeeC
Confidence 12458999863
No 71
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.3e-18 Score=133.41 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=66.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+.+ ......+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 2 i~i~~l~~~y~~--~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~ 76 (343)
T PRK11153 2 IELKNISKVFPQ--GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKE 76 (343)
T ss_pred EEEEeEEEEeCC--CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHH
Confidence 678888887741 011246999999999999999999999999999999999999984 99999999986431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 77 ~~~~~~~ig~v~q~ 90 (343)
T PRK11153 77 LRKARRQIGMIFQH 90 (343)
T ss_pred HHHHhcCEEEEeCC
Confidence 3569999863
No 72
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.76 E-value=5.9e-18 Score=127.21 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=65.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 73 (250)
T PRK11264 3 AIEVKNLVKKFH------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSL 73 (250)
T ss_pred cEEEeceEEEEC------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccc
Confidence 478888888764 246999999999999999999999999999999999999884 9999999987632
Q ss_pred ---------CCCceEEEEee
Q 033293 107 ---------NRRDIVSINLI 117 (122)
Q Consensus 107 ---------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 74 SQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred cchhhHHHHhhhhEEEEecC
Confidence 13468898863
No 73
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.3e-18 Score=129.68 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
.+++++|+++.+.+-.....+.+|+++||+|.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEEN 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccc
Confidence 3588999998875311101246999999999999999999999999999999999999884 9999999988642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 80 ~~~~~~~i~~v~q~ 93 (280)
T PRK13633 80 LWDIRNKAGMVFQN 93 (280)
T ss_pred HHHHhhheEEEecC
Confidence 14568998863
No 74
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.2e-18 Score=129.18 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=65.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--R 108 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--~ 108 (122)
.++++++++.+.+ ++.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++... .
T Consensus 6 ~l~~~~l~~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (272)
T PRK15056 6 GIVVNDVTVTWRN-----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA---SGKISILGQPTRQALQK 77 (272)
T ss_pred eEEEEeEEEEecC-----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEhHHhhcc
Confidence 5778888887631 356999999999999999999999999999999999999884 99999999886432 2
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
..++|+|+-
T Consensus 78 ~~i~~v~q~ 86 (272)
T PRK15056 78 NLVAYVPQS 86 (272)
T ss_pred ceEEEeccc
Confidence 358888753
No 75
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=7.5e-18 Score=123.58 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=63.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++++++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 2 LEARNLACERD------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD---AGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred eEEEEEEEEEC------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccchHHh
Confidence 57788888763 246999999999999999999999999999999999999984 9999999987642 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 73 ~~~~~~~~~ 81 (204)
T PRK13538 73 HQDLLYLGH 81 (204)
T ss_pred hhheEEeCC
Confidence 345777764
No 76
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.75 E-value=7.9e-18 Score=122.82 Aligned_cols=76 Identities=28% Similarity=0.444 Sum_probs=63.2
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+. ...+++++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (198)
T TIGR01189 1 LAARNLACSRG------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEP 71 (198)
T ss_pred CEEEEEEEEEC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccchHHh
Confidence 35677777653 356999999999999999999999999999999999999884 99999999875321
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 72 ~~~i~~~~q 80 (198)
T TIGR01189 72 HRNILYLGH 80 (198)
T ss_pred hhheEEecc
Confidence 346788875
No 77
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.3e-18 Score=133.98 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=67.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++++++.+. +..+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~~------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~ 73 (369)
T PRK11000 3 SVTLRNVTKAYG------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPA 73 (369)
T ss_pred EEEEEEEEEEeC------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHh
Confidence 477888888764 246999999999999999999999999999999999999884 9999999998642 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
.+.++|+++-
T Consensus 74 ~~~i~~v~Q~ 83 (369)
T PRK11000 74 ERGVGMVFQS 83 (369)
T ss_pred HCCEEEEeCC
Confidence 4569999873
No 78
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.8e-18 Score=129.19 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=66.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+.+-. .....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~-~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 2 GINLQNVSYTYQAGT-PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKN 77 (280)
T ss_pred eEEEEEEEEEcCCCC-ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccc
Confidence 367888888764200 00135999999999999999999999999999999999999884 9999999987642
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 78 ~~~~~~~~~i~~~~q~ 93 (280)
T PRK13649 78 KDIKQIRKKVGLVFQF 93 (280)
T ss_pred cCHHHHHhheEEEeeC
Confidence 13468999874
No 79
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=7.8e-18 Score=126.25 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=63.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+ ...+|+++||.|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (242)
T cd03295 1 IEFENVTKRYGG-----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVE 72 (242)
T ss_pred CEEEEEEEEeCC-----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHH
Confidence 356777776531 146999999999999999999999999999999999999884 9999999987642
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 73 ~~~~i~~~~q 82 (242)
T cd03295 73 LRRKIGYVIQ 82 (242)
T ss_pred hhcceEEEcc
Confidence 1346888876
No 80
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=6.8e-18 Score=127.18 Aligned_cols=81 Identities=27% Similarity=0.353 Sum_probs=66.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+. ...+|+++||++.+|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (253)
T PRK14267 4 AIETVNLRVYYG------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77 (253)
T ss_pred eEEEEeEEEEeC------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 578888888763 246999999999999999999999999999999999998762 1248999999988641
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 78 ~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 78 VDPIEVRREVGMVFQY 93 (253)
T ss_pred cChHHHhhceeEEecC
Confidence 13468888763
No 81
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.2e-18 Score=126.76 Aligned_cols=82 Identities=18% Similarity=0.221 Sum_probs=66.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
+.++++++++.+. ...+|+++||++++|++++|+||||||||||+++|+|+.. +....+|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYG------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEEC------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 5688999998774 2469999999999999999999999999999999999864 100148999999988642
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 79 ~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 79 HVDVVELRRRVGMVFQK 95 (253)
T ss_pred ccCHHHHhhcEEEEecC
Confidence 13468999863
No 82
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.1e-18 Score=128.16 Aligned_cols=82 Identities=24% Similarity=0.258 Sum_probs=68.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
+.++++|+++.+.... .-.+++++|||++.+||.++|+|+||||||||.++|+|+.+|. +|+|.++|++....
T Consensus 2 ~~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 2 TLLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKR 76 (252)
T ss_pred ceEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCcccc
Confidence 4688999999886411 1125999999999999999999999999999999999999995 99999999876543
Q ss_pred ----CCceEEEEe
Q 033293 108 ----RRDIVSINL 116 (122)
Q Consensus 108 ----~~~i~~v~~ 116 (122)
++.+-+|+|
T Consensus 77 ~~~~~~~VQmVFQ 89 (252)
T COG1124 77 AKAFYRPVQMVFQ 89 (252)
T ss_pred chhhccceeEEec
Confidence 456777765
No 83
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.75 E-value=9.1e-18 Score=126.56 Aligned_cols=64 Identities=27% Similarity=0.393 Sum_probs=56.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
++++|+++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++
T Consensus 1 i~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i 64 (252)
T TIGR03005 1 VRFSDVTKRFG------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQL 64 (252)
T ss_pred CEEEEEEEEeC------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEc
Confidence 35778888763 246999999999999999999999999999999999999884 99999999876
No 84
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=8.2e-18 Score=123.73 Aligned_cols=77 Identities=25% Similarity=0.347 Sum_probs=64.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NR 108 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~ 108 (122)
.++++|+++.+. ...+++++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+
T Consensus 2 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 72 (207)
T PRK13539 2 MLEGEDLACVRG------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA---AGTIKLDGGDIDDPDVA 72 (207)
T ss_pred EEEEEeEEEEEC------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeCcchhhH
Confidence 478888888764 246999999999999999999999999999999999999884 9999999987532 23
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
+.++|+++
T Consensus 73 ~~~~~~~~ 80 (207)
T PRK13539 73 EACHYLGH 80 (207)
T ss_pred hhcEEecC
Confidence 45778763
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.4e-18 Score=130.06 Aligned_cols=83 Identities=22% Similarity=0.335 Sum_probs=67.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+.+.. .....+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 2 DITFQKVEHRYQYKT-PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEEECCCC-cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 377889988874211 01246999999999999999999999999999999999999884 9999999998642
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 78 ~~~~~~~~~ig~v~q~ 93 (290)
T PRK13634 78 KKLKPLRKKVGIVFQF 93 (290)
T ss_pred chHHHHHhhEEEEeeC
Confidence 13468999874
No 86
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.75 E-value=2e-18 Score=131.73 Aligned_cols=74 Identities=23% Similarity=0.403 Sum_probs=64.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|++..|. ++.+++++||+|++|++++++|||||||||+|++|.+++.|. +|+|+++|+++..
T Consensus 2 I~~~nvsk~y~------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 2 IEFENVSKRYG------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVE 72 (309)
T ss_pred ceeeeeehhcC------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHH
Confidence 57778777664 467999999999999999999999999999999999999995 9999999998754
Q ss_pred CCCceEEE
Q 033293 107 NRRDIVSI 114 (122)
Q Consensus 107 ~~~~i~~v 114 (122)
-+++++||
T Consensus 73 LRr~IGYv 80 (309)
T COG1125 73 LRRKIGYV 80 (309)
T ss_pred HHHhhhhh
Confidence 35678887
No 87
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.75 E-value=1.1e-17 Score=123.51 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=66.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--C
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--N 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~ 107 (122)
..++++++++.+. ++.+++++||++.+|++++|+|+||||||||+++|+|+++|. +|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~i~~~~~ 80 (214)
T PRK13543 10 PLLAAHALAFSRN------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDR 80 (214)
T ss_pred ceEEEeeEEEecC------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CeeEEECCEEccchhh
Confidence 4588899988763 246999999999999999999999999999999999999884 9999999987643 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
.+.++|+++
T Consensus 81 ~~~i~~~~q 89 (214)
T PRK13543 81 SRFMAYLGH 89 (214)
T ss_pred hhceEEeec
Confidence 335788875
No 88
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.75 E-value=9.2e-18 Score=125.62 Aligned_cols=77 Identities=29% Similarity=0.422 Sum_probs=64.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 ~i~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 2 ILYLEGLSVSFD------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72 (242)
T ss_pred eEEEEeeEEEcC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHH
Confidence 367888887763 246999999999999999999999999999999999999884 99999999876421
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 73 ~~~~~~i~~~~q 84 (242)
T TIGR03411 73 QIARAGIGRKFQ 84 (242)
T ss_pred HHHhcCeeEecc
Confidence 235888875
No 89
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=126.33 Aligned_cols=82 Identities=27% Similarity=0.246 Sum_probs=67.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. +..+++++||++++|++++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYT------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeC------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 3588999988774 2469999999999999999999999999999999999987620 138999999987531
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 80 ~~~~~~~~~~i~~v~q~ 96 (254)
T PRK14273 80 NFDILELRRKIGMVFQT 96 (254)
T ss_pred cccHHHHhhceEEEeec
Confidence 13468999864
No 90
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.75 E-value=9.8e-18 Score=125.27 Aligned_cols=77 Identities=27% Similarity=0.395 Sum_probs=62.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEECCEECCCC--
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~g~~~~~~-- 107 (122)
++++|+++.+. +..+|+++||.+++|++++|+||||||||||+++|+|++ +| .+|+|.++|+++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 71 (243)
T TIGR01978 1 LKIKDLHVSVE------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEP 71 (243)
T ss_pred CeEeeEEEEEC------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCH
Confidence 35777877663 246999999999999999999999999999999999995 45 499999999876421
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
+..++|+++-
T Consensus 72 ~~~~~~~i~~v~q~ 85 (243)
T TIGR01978 72 DERARAGLFLAFQY 85 (243)
T ss_pred HHhhccceEeeecc
Confidence 2237888763
No 91
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-17 Score=128.24 Aligned_cols=80 Identities=23% Similarity=0.256 Sum_probs=67.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+.+ ....+|+++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~----~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13635 5 IIRVEHISFRYPD----AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVW 77 (279)
T ss_pred eEEEEEEEEEeCC----CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 4788999887742 1245999999999999999999999999999999999999984 99999999987431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
.+.++|+++-
T Consensus 78 ~~~~~i~~~~q~ 89 (279)
T PRK13635 78 DVRRQVGMVFQN 89 (279)
T ss_pred HHhhheEEEEeC
Confidence 3468999874
No 92
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-17 Score=126.66 Aligned_cols=78 Identities=32% Similarity=0.484 Sum_probs=65.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~ 72 (258)
T PRK13548 2 MLEARNLSVRLG------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72 (258)
T ss_pred eEEEEeEEEEeC------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHH
Confidence 367888888763 246999999999999999999999999999999999999884 9999999987532
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
..+.++|+++-
T Consensus 73 ~~~~~i~~~~q~ 84 (258)
T PRK13548 73 ELARRRAVLPQH 84 (258)
T ss_pred HhhhheEEEccC
Confidence 12458888763
No 93
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.75 E-value=9.7e-18 Score=126.91 Aligned_cols=78 Identities=26% Similarity=0.293 Sum_probs=65.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE-----CC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK-----GG 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~-----~~ 105 (122)
.++++++++.+. ++.+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|++ +.
T Consensus 6 ~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~ 76 (258)
T PRK11701 6 LLSVRGLTKLYG------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLY 76 (258)
T ss_pred eEEEeeeEEEcC------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccc
Confidence 578889888764 246999999999999999999999999999999999999884 9999999987 43
Q ss_pred CC---------CCceEEEEee
Q 033293 106 TN---------RRDIVSINLI 117 (122)
Q Consensus 106 ~~---------~~~i~~v~~~ 117 (122)
.. ++.++|+|+-
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 77 ALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred cCCHHHHHHHhhcceEEEeeC
Confidence 21 2358898864
No 94
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.75 E-value=1.1e-17 Score=133.69 Aligned_cols=79 Identities=20% Similarity=0.345 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+. ...+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++..
T Consensus 13 ~~L~l~~l~~~~~------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~ 83 (375)
T PRK09452 13 PLVELRGISKSFD------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPA 83 (375)
T ss_pred ceEEEEEEEEEEC------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 4588999988774 246899999999999999999999999999999999999984 9999999998643
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|++|-
T Consensus 84 ~~r~ig~vfQ~ 94 (375)
T PRK09452 84 ENRHVNTVFQS 94 (375)
T ss_pred HHCCEEEEecC
Confidence 34679999863
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=8.2e-18 Score=129.32 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.. +..+++++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~ 76 (283)
T PRK13636 5 ILKVEELNYNYSD-----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKG 76 (283)
T ss_pred eEEEEeEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcch
Confidence 5889999987731 246999999999999999999999999999999999999884 9999999998631
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~~~ig~v~q~ 90 (283)
T PRK13636 77 LMKLRESVGMVFQD 90 (283)
T ss_pred HHHHHhhEEEEecC
Confidence 13468999874
No 96
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-17 Score=127.82 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=65.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.. ...+++++||+|.+||+++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (275)
T PRK13639 2 LETRDLKYSYPD-----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSL 73 (275)
T ss_pred EEEEEEEEEeCC-----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchH
Confidence 678888887631 246999999999999999999999999999999999999884 9999999998631
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 74 ~~~~~~i~~v~q~ 86 (275)
T PRK13639 74 LEVRKTVGIVFQN 86 (275)
T ss_pred HHHHhheEEEeeC
Confidence 13468999874
No 97
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.75 E-value=1.1e-17 Score=126.83 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=66.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+. +..+|+++||++.+|++++|+||||||||||+++|+|+++|....+|+|.++|.++...
T Consensus 3 ~~l~~~nl~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~ 76 (262)
T PRK09984 3 TIIRVEKLAKTFN------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76 (262)
T ss_pred cEEEEeeEEEEeC------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccc
Confidence 3578889888763 35699999999999999999999999999999999999987422369999999876321
Q ss_pred --------CCceEEEEee
Q 033293 108 --------RRDIVSINLI 117 (122)
Q Consensus 108 --------~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 77 ~~~~~~~~~~~i~~~~q~ 94 (262)
T PRK09984 77 LARDIRKSRANTGYIFQQ 94 (262)
T ss_pred cchhHHHHHhheEEEccc
Confidence 2358888863
No 98
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.75 E-value=1.2e-17 Score=127.07 Aligned_cols=83 Identities=20% Similarity=0.226 Sum_probs=66.7
Q ss_pred eEEeeEEEEEeeee---ccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 32 LVWEEVKVEAKNLR---NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~---~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
++++++++.+.+-. ....+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLD 79 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccC
Confidence 67888888774200 001256999999999999999999999999999999999999884 9999999988642
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 80 ~~~~~~~~~~i~~v~q~ 96 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQD 96 (265)
T ss_pred HHHHHHHhhceEEEecC
Confidence 13468999874
No 99
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=126.87 Aligned_cols=83 Identities=22% Similarity=0.197 Sum_probs=67.3
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~ 106 (122)
...++++|+++.+. +..+|+++||+|++|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++..
T Consensus 17 ~~~l~~~nl~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYG------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEEC------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 34688999988774 246999999999999999999999999999999999998641 1148999999988642
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 91 ~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 91 PRLDVVELRARVGMVFQK 108 (267)
T ss_pred cccchHHHhhceEEEecC
Confidence 13468898763
No 100
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.74 E-value=1.3e-17 Score=134.38 Aligned_cols=77 Identities=23% Similarity=0.450 Sum_probs=66.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+. ++.+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.++|+++..
T Consensus 3 ~L~~~nls~~y~------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 3 MIDVSDLSVEFG------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73 (402)
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHH
Confidence 578889988764 357999999999999999999999999999999999999984 9999999998643
Q ss_pred -CCCceEEEEe
Q 033293 107 -NRRDIVSINL 116 (122)
Q Consensus 107 -~~~~i~~v~~ 116 (122)
..+.++|+++
T Consensus 74 ~~~~~ig~v~q 84 (402)
T PRK09536 74 AASRRVASVPQ 84 (402)
T ss_pred HHhcceEEEcc
Confidence 1356899876
No 101
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=127.53 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=65.2
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.. ...+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (274)
T PRK13644 2 IRLENVSYSYPD-----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQ 73 (274)
T ss_pred EEEEEEEEEcCC-----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHH
Confidence 567888887631 245999999999999999999999999999999999999884 99999999986421
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 74 ~~~~~i~~v~q~ 85 (274)
T PRK13644 74 GIRKLVGIVFQN 85 (274)
T ss_pred HHHhheEEEEEC
Confidence 2458898874
No 102
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=7e-18 Score=123.95 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=62.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+. ...+++++||++++| +++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1 i~~~~~~~~~~------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (211)
T cd03264 1 LQLENLTKRYG------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70 (211)
T ss_pred CEEEEEEEEEC------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHH
Confidence 35777777663 246999999999999 99999999999999999999999884 99999999875421
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 71 ~~~i~~~~q~ 80 (211)
T cd03264 71 RRRIGYLPQE 80 (211)
T ss_pred HhheEEecCC
Confidence 3568888763
No 103
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=127.32 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=66.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+. ++.+|+++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 11 ~l~i~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 11 TFALRNVSFRVP------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81 (265)
T ss_pred eEEEeeEEEEEC------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHH
Confidence 578889988764 246999999999999999999999999999999999999884 9999999987532
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 82 ~~~~~i~~v~q~ 93 (265)
T PRK10575 82 AFARKVAYLPQQ 93 (265)
T ss_pred HHhhheEEeccC
Confidence 13468898763
No 104
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.3e-17 Score=125.64 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=64.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 75 (255)
T PRK11300 5 LLSVSGLMMRFG------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGH 75 (255)
T ss_pred eEEEeeEEEEEC------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHH
Confidence 578888888763 256999999999999999999999999999999999999884 99999999986431
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
+..++|+++
T Consensus 76 ~~~~~~i~~~~q 87 (255)
T PRK11300 76 QIARMGVVRTFQ 87 (255)
T ss_pred HHHhcCeEEecc
Confidence 234777765
No 105
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.74 E-value=8.6e-18 Score=123.13 Aligned_cols=76 Identities=30% Similarity=0.391 Sum_probs=63.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++++++.+. ...+++++||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++.. .
T Consensus 1 l~i~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 71 (201)
T cd03231 1 LEADELTCERD------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSI 71 (201)
T ss_pred CEEEEEEEEeC------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccccHHh
Confidence 35677777663 246999999999999999999999999999999999999884 9999999987532 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+|+
T Consensus 72 ~~~i~~~~q 80 (201)
T cd03231 72 ARGLLYLGH 80 (201)
T ss_pred hhheEEecc
Confidence 346888875
No 106
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.4e-17 Score=127.10 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=67.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ..+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~----~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~ 78 (271)
T PRK13632 6 VMIKVENVSFSYPN----SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENL 78 (271)
T ss_pred eEEEEEeEEEEcCC----CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCH
Confidence 45788888887631 1346999999999999999999999999999999999999884 9999999998642
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 79 ~~~~~~i~~v~q~ 91 (271)
T PRK13632 79 KEIRKKIGIIFQN 91 (271)
T ss_pred HHHhcceEEEEeC
Confidence 13468999864
No 107
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.1e-17 Score=126.62 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=66.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 11 ~~l~i~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYG------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEEC------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 3588999988764 2469999999999999999999999999999999999986 321248999999998642
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 85 ~~~~~~~~~~i~~v~q~ 101 (259)
T PRK14274 85 KVDLVELRKNIGMVFQK 101 (259)
T ss_pred ccCHHHHhhceEEEecC
Confidence 13468998763
No 108
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=6.3e-18 Score=125.44 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=64.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.+ ...+++++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~-----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 3 IEFENVNFSYDE-----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74 (229)
T ss_pred EEEEEEEEecCC-----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEeHHHcCHHH
Confidence 567788776531 235999999999999999999999999999999999999884 9999999987542
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 75 ~~~~i~~~~q~ 85 (229)
T cd03254 75 LRSMIGVVLQD 85 (229)
T ss_pred HhhhEEEecCC
Confidence 13458888763
No 109
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.74 E-value=1.3e-17 Score=126.09 Aligned_cols=77 Identities=31% Similarity=0.451 Sum_probs=64.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. +..+|+++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 2 l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 72 (256)
T TIGR03873 2 LRLSRVSWSAG------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRA 72 (256)
T ss_pred ceEEeEEEEEC------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHH
Confidence 46778887663 246999999999999999999999999999999999999884 99999999876431
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 73 ~~~~i~~~~q~ 83 (256)
T TIGR03873 73 RARRVALVEQD 83 (256)
T ss_pred HhhheEEeccc
Confidence 3458888763
No 110
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=124.42 Aligned_cols=81 Identities=23% Similarity=0.311 Sum_probs=65.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNVHFG------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEEEeC------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 477888888764 2469999999999999999999999999999999999986 311248999999988632
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 78 ~~~~~~~~~i~~~~q~ 93 (252)
T PRK14256 78 VDPVSIRRRVGMVFQK 93 (252)
T ss_pred CChHHhhccEEEEecC
Confidence 14468898763
No 111
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=126.22 Aligned_cols=78 Identities=31% Similarity=0.409 Sum_probs=65.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
+++++|+++.+. +..+|+++||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 72 (255)
T PRK11231 2 TLRTENLTVGYG------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSR 72 (255)
T ss_pred EEEEEeEEEEEC------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHH
Confidence 477888888763 246999999999999999999999999999999999999884 9999999987532
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
..+.++|+|+-
T Consensus 73 ~~~~~i~~~~q~ 84 (255)
T PRK11231 73 QLARRLALLPQH 84 (255)
T ss_pred HHhhheEEeccc
Confidence 13458888763
No 112
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=124.61 Aligned_cols=82 Identities=26% Similarity=0.274 Sum_probs=66.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGTN 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~~ 107 (122)
+.++++++++.+. ++.+|+++||++++|++++|+||||||||||+++|+|+..+. ...+|+|.++|+++...
T Consensus 5 ~~i~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLNLWYG------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeEEEEC------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 4688899988764 246999999999999999999999999999999999987531 11379999999886421
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 79 ~~~~~~~~~~i~~~~q~ 95 (253)
T PRK14261 79 GADVVALRRKIGMVFQR 95 (253)
T ss_pred ccchhhhhceEEEEecC
Confidence 3458888763
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-17 Score=124.42 Aligned_cols=81 Identities=28% Similarity=0.380 Sum_probs=66.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+. +..+++++||++++|++++|+||||||||||+++|+|+++|. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFG------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEEC------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 578888888764 246999999999999999999999999999999999998641 1248999999998642
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~~~i~~v~q~ 90 (250)
T PRK14247 77 VIELRRRVQMVFQI 90 (250)
T ss_pred HHHHhccEEEEecc
Confidence 23568999874
No 114
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.74 E-value=1.2e-17 Score=126.28 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=58.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
.++++++++.+. ++.++++++|++.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~ 70 (257)
T PRK10619 5 KLNVIDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTIN 70 (257)
T ss_pred cEEEeeeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcc
Confidence 478889888774 246999999999999999999999999999999999999884 899999998763
No 115
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2e-17 Score=125.44 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=66.3
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~ 106 (122)
...++++|+++.+. ...+|+++||+|++|++++|+||||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 11 ~~~l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYG------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeC------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 34678888888764 2469999999999999999999999999999999999986 211248999999988632
Q ss_pred -------CCCceEEEEe
Q 033293 107 -------NRRDIVSINL 116 (122)
Q Consensus 107 -------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 85 ~~~~~~~~~~~i~~~~q 101 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQ 101 (260)
T ss_pred cccchHHHhcceEEEec
Confidence 1346889876
No 116
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.74 E-value=1.6e-17 Score=126.55 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=67.7
Q ss_pred eeeEEeeEEEEEeeeec---cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 30 AHLVWEEVKVEAKNLRN---GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~---~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
..++++|+++.+..... .....+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~ 79 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHF 79 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCC
Confidence 35789999988742100 01246999999999999999999999999999999999999884 9999999988642
Q ss_pred C-----CCceEEEEee
Q 033293 107 N-----RRDIVSINLI 117 (122)
Q Consensus 107 ~-----~~~i~~v~~~ 117 (122)
. .+.++|+|+-
T Consensus 80 ~~~~~~~~~i~~v~q~ 95 (267)
T PRK15112 80 GDYSYRSQRIRMIFQD 95 (267)
T ss_pred CchhhHhccEEEEecC
Confidence 1 2468998873
No 117
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.74 E-value=1.8e-17 Score=122.78 Aligned_cols=76 Identities=22% Similarity=0.355 Sum_probs=63.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-CCc
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-RRD 110 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-~~~ 110 (122)
++++++++.+. .+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++... .+.
T Consensus 1 l~l~~v~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~~~~ 71 (223)
T TIGR03740 1 LETKNLSKRFG------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKDLHK 71 (223)
T ss_pred CEEEeEEEEEC------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccc
Confidence 35677777653 246999999999999999999999999999999999999884 99999999876432 346
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 72 ~~~~~q 77 (223)
T TIGR03740 72 IGSLIE 77 (223)
T ss_pred EEEEcC
Confidence 888865
No 118
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.2e-17 Score=132.00 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=68.3
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
...++++++++.+. +..++++++|++++|++++|+|||||||||||++|+|+.+|. +|+|.++|+++..
T Consensus 17 ~~~l~l~~v~~~~~------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 17 TPLLEIRNLTKSFD------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVP 87 (377)
T ss_pred CceEEEEeEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCC
Confidence 45688999988764 246999999999999999999999999999999999999984 9999999998642
Q ss_pred -CCCceEEEEe
Q 033293 107 -NRRDIVSINL 116 (122)
Q Consensus 107 -~~~~i~~v~~ 116 (122)
.++.++|++|
T Consensus 88 ~~~r~ig~vfQ 98 (377)
T PRK11607 88 PYQRPINMMFQ 98 (377)
T ss_pred HHHCCEEEEeC
Confidence 3567999986
No 119
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.1e-17 Score=129.08 Aligned_cols=81 Identities=22% Similarity=0.286 Sum_probs=66.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+..- ......+|+++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 i~~~~v~~~y~~~-~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~ 77 (288)
T PRK13643 2 IKFEKVNYTYQPN-SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQK 77 (288)
T ss_pred EEEEEEEEEeCCC-CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 6788998887421 001135999999999999999999999999999999999999984 9999999998631
Q ss_pred ----CCCceEEEEe
Q 033293 107 ----NRRDIVSINL 116 (122)
Q Consensus 107 ----~~~~i~~v~~ 116 (122)
.++.++||++
T Consensus 78 ~~~~~~~~ig~v~q 91 (288)
T PRK13643 78 EIKPVRKKVGVVFQ 91 (288)
T ss_pred cHHHHHhhEEEEec
Confidence 1346889886
No 120
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.8e-17 Score=124.71 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=65.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++.+|++++|+||||||||||+++|+|++++....+|+|.++|+++...
T Consensus 2 ~~~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYG------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEEC------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 356788888763 24699999999999999999999999999999999999752112489999999986431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 76 ~~~~~i~~~~q~ 87 (246)
T PRK14269 76 ALRKNVGMVFQQ 87 (246)
T ss_pred HHhhhEEEEecC
Confidence 3468998763
No 121
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.7e-17 Score=126.21 Aligned_cols=79 Identities=29% Similarity=0.319 Sum_probs=66.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+. +..+|+++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 6 ~~l~i~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 6 ARLRGEQLTLGYG------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYAS 76 (265)
T ss_pred cEEEEEEEEEEEC------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCH
Confidence 5678888888764 246999999999999999999999999999999999999884 99999999876321
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
.+.++|+|+-
T Consensus 77 ~~~~~~i~~v~q~ 89 (265)
T PRK10253 77 KEVARRIGLLAQN 89 (265)
T ss_pred HHHhhheEEeecc
Confidence 2458888763
No 122
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=126.00 Aligned_cols=83 Identities=28% Similarity=0.298 Sum_probs=67.7
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~ 106 (122)
...++++|+++.+. .+.+|+++||++.+|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 18 EIALSTKDLHVYYG------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CeEEEEeeEEEEEC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 35688999988763 356999999999999999999999999999999999998631 1248999999988632
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 92 ~~~~~~~~~~~i~~v~q~ 109 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQR 109 (267)
T ss_pred ccCChHHHhcceEEEecC
Confidence 14468999863
No 123
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.4e-17 Score=129.21 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=60.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..++++|+++.+..-. .....+|+++||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 20 ~~l~~~nl~~~y~~~~-~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~ 91 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ-ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIG 91 (320)
T ss_pred ceEEEEeEEEEeCCCC-cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcc
Confidence 4689999999875210 01235999999999999999999999999999999999999984 999999998753
No 124
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.74 E-value=8.4e-18 Score=122.86 Aligned_cols=74 Identities=27% Similarity=0.338 Sum_probs=60.6
Q ss_pred eeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--------
Q 033293 35 EEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-------- 106 (122)
Q Consensus 35 ~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-------- 106 (122)
+|+++.+. ++.+++++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 ~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 2 KNISKKFG------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred cceEEEEC------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccchhhHHH
Confidence 45566553 246999999999999999999999999999999999999884 9999999998421
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 73 ~~~~~i~~~~q~ 84 (206)
T TIGR03608 73 FRREKLGYLFQN 84 (206)
T ss_pred HHHhCeeEEecc
Confidence 13468888753
No 125
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.2e-17 Score=126.57 Aligned_cols=79 Identities=23% Similarity=0.308 Sum_probs=65.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+.. ...+|+++||++.+|++++|+|+||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 3 ~l~~~~l~~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 3 LIETRDLCYSYSG-----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIR 74 (277)
T ss_pred eEEEEEEEEEeCC-----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4778888887631 235999999999999999999999999999999999999884 99999999986431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
.+.++|+++-
T Consensus 75 ~~~~~i~~v~q~ 86 (277)
T PRK13652 75 EVRKFVGLVFQN 86 (277)
T ss_pred HHHhheEEEecC
Confidence 2458888764
No 126
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=124.50 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=65.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC--CCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK--NVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~--~~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. +..+++++||++++|++++|+||||||||||+++|+|+.++ ....+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYG------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEEC------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 467888888764 24699999999999999999999999999999999998753 11248999999988642
Q ss_pred -----CCCceEEEEe
Q 033293 107 -----NRRDIVSINL 116 (122)
Q Consensus 107 -----~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 77 ~~~~~~~~~i~~~~q 91 (250)
T PRK14240 77 IDVNQLRKRVGMVFQ 91 (250)
T ss_pred cchHHHhccEEEEec
Confidence 1346889876
No 127
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.9e-17 Score=124.56 Aligned_cols=81 Identities=22% Similarity=0.256 Sum_probs=65.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+. ...+++++||++++|++++|+||||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~ 76 (250)
T PRK14262 3 IIEIENFSAYYG------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ 76 (250)
T ss_pred eEEEEeeEEEeC------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence 578888888764 246999999999999999999999999999999999998731 1148999999987642
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 ~~~~~~~~~i~~~~q~ 92 (250)
T PRK14262 77 LDVTEYRKKVGMVFQK 92 (250)
T ss_pred hhHHHhhhhEEEEecC
Confidence 13568898763
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.8e-17 Score=126.36 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=67.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++++++.+.+ ....+|+++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 6 ~~l~i~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 6 SIIVFKNVSFQYQS----DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNF 78 (269)
T ss_pred ceEEEEEEEEEcCC----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCH
Confidence 35788898887642 1135899999999999999999999999999999999999884 99999999986431
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 79 ~~~~~~i~~v~q~ 91 (269)
T PRK13648 79 EKLRKHIGIVFQN 91 (269)
T ss_pred HHHHhheeEEEeC
Confidence 3468998864
No 129
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.74 E-value=1.5e-17 Score=119.27 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=63.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+ ....++++++|.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 1 LEVENVSFRYPG----AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDGADISQWDPNE 73 (173)
T ss_pred CEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEEcccCCHHH
Confidence 356777776532 1245999999999999999999999999999999999999884 9999999987643
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 74 ~~~~i~~~~q 83 (173)
T cd03246 74 LGDHVGYLPQ 83 (173)
T ss_pred HHhheEEECC
Confidence 1346888875
No 130
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.74 E-value=1.7e-17 Score=121.10 Aligned_cols=83 Identities=37% Similarity=0.555 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+.+........+++++||++++|++++|+||||||||||+++|+|++ +| .+|+|.++|+++..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~~~~~~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGRPLDKRS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEeCchHh
Confidence 467888888774210001246999999999999999999999999999999999999 77 49999999998643
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 80 ~~~~i~~~~q 89 (194)
T cd03213 80 FRKIIGYVPQ 89 (194)
T ss_pred hhheEEEccC
Confidence 2456888865
No 131
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.6e-17 Score=124.69 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=66.3
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~ 106 (122)
...++++++++.+. .+.+|+++||++.+|++++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 10 ~~~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~ 83 (258)
T PRK14268 10 QPQIKVENLNLWYG------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83 (258)
T ss_pred ceeEEEeeeEEEeC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccc
Confidence 34688888888763 2469999999999999999999999999999999999987410 148999999987632
Q ss_pred -------CCCceEEEEe
Q 033293 107 -------NRRDIVSINL 116 (122)
Q Consensus 107 -------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 84 ~~~~~~~~~~~i~~v~q 100 (258)
T PRK14268 84 PDVDVVELRKNVGMVFQ 100 (258)
T ss_pred ccchHHHHhhhEEEEec
Confidence 1345889876
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=127.66 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+.. .....+|+++||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKE---DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCC---CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHH
Confidence 5788899887742 11235999999999999999999999999999999999999984 9999999998743
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 78 ~~~~~i~~v~q~ 89 (279)
T PRK13650 78 DIRHKIGMVFQN 89 (279)
T ss_pred HHHhhceEEEcC
Confidence 13468898873
No 133
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=127.14 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=66.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. ...+|+++||+|++|++++|+||||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 12 ~~l~i~nl~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~ 85 (269)
T PRK14259 12 IIISLQNVTISYG------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDP 85 (269)
T ss_pred ceEEEEeEEEEEC------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 5688999988774 246999999999999999999999999999999999997631 0148999999987631
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 86 ~~~~~~~~~~i~~v~q~ 102 (269)
T PRK14259 86 RVDPVEVRRRIGMVFQQ 102 (269)
T ss_pred cCCHHHHhhceEEEccC
Confidence 13468998763
No 134
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=1e-17 Score=124.96 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=63.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.. ....+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 1 ITFEHVRFRYKP----DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73 (237)
T ss_pred CEEEEEEEecCC----CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHH
Confidence 356777776531 1246999999999999999999999999999999999999884 9999999987532
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 74 ~~~~i~~~~q~ 84 (237)
T cd03252 74 LRRQVGVVLQE 84 (237)
T ss_pred HhhcEEEEcCC
Confidence 13468888763
No 135
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=1.1e-17 Score=123.65 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=65.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.. ..+.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 3 l~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 3 IEFKNVSLRYRP----NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS---SGSILIDGVDISKIGLHD 75 (221)
T ss_pred EEEEEEEEecCC----CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhHhCCHHH
Confidence 567888877642 1246999999999999999999999999999999999999884 9999999987632
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 76 ~~~~i~~~~q~ 86 (221)
T cd03244 76 LRSRISIIPQD 86 (221)
T ss_pred HhhhEEEECCC
Confidence 23568888764
No 136
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=1.9e-17 Score=119.57 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=61.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+ ++++++|++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 4 ~l~~~~l~~~~----------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~ 70 (182)
T cd03215 4 VLEVRGLSVKG----------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA---SGEITLDGKPVTRRSPR 70 (182)
T ss_pred EEEEeccEEEe----------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccCHH
Confidence 46667766542 899999999999999999999999999999999999884 99999999886432
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 71 ~~~~~~i~~~~q 82 (182)
T cd03215 71 DAIRAGIAYVPE 82 (182)
T ss_pred HHHhCCeEEecC
Confidence 346888875
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.74 E-value=2.7e-17 Score=129.44 Aligned_cols=85 Identities=26% Similarity=0.227 Sum_probs=69.8
Q ss_pred eeeEEeeEEEEEeeee-------ccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 30 AHLVWEEVKVEAKNLR-------NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~-------~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+.++++|+++.|..-. ......+++++||+|.+||+++|+|+||||||||+++|+|+++|. +|+|.++|+
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCE
Confidence 5689999999885310 001246999999999999999999999999999999999999884 999999999
Q ss_pred ECCC--------CCCceEEEEee
Q 033293 103 KGGT--------NRRDIVSINLI 117 (122)
Q Consensus 103 ~~~~--------~~~~i~~v~~~ 117 (122)
++.. .++.++||+|-
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~ 106 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQD 106 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecC
Confidence 8643 13569999874
No 138
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.74 E-value=9.2e-18 Score=120.77 Aligned_cols=78 Identities=27% Similarity=0.367 Sum_probs=63.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----C
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----N 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~ 107 (122)
++++++++.+.. ....+++++||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPE----QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKAL 73 (178)
T ss_pred CEEEEEEEEeCC----CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCEEHHHHHHHH
Confidence 356777776642 1135999999999999999999999999999999999999884 9999999987532 1
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 74 ~~~i~~~~q 82 (178)
T cd03247 74 SSLISVLNQ 82 (178)
T ss_pred HhhEEEEcc
Confidence 345888875
No 139
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=124.41 Aligned_cols=82 Identities=24% Similarity=0.270 Sum_probs=66.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. ...+|+++||++.+|++++|+|+||||||||+++|+|+.+|. ...+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNLWYG------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEEEEC------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 4678888888763 246999999999999999999999999999999999998641 1148999999998632
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~~~~~~i~~~~q~ 93 (251)
T PRK14270 77 DVDVVELRKRVGMVFQK 93 (251)
T ss_pred cccHHHHHhheEEEecC
Confidence 13468999863
No 140
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.73 E-value=8.1e-18 Score=121.96 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=56.6
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-------CCCceEEEEee
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-------NRRDIVSINLI 117 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-------~~~~i~~v~~~ 117 (122)
+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .++.++|+++-
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 76 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGLLERRQRVGLVFQD 76 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceeEEECCEEccccccchHHHHhhEEEEecC
Confidence 56999999999999999999999999999999999999884 9999999988631 13458898864
No 141
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.8e-17 Score=125.33 Aligned_cols=83 Identities=19% Similarity=0.223 Sum_probs=66.8
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~ 106 (122)
...++++++++.+. ...+|+++||.|.+|++++|+||||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 37 ~~~l~i~~l~~~~~------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~ 110 (285)
T PRK14254 37 ETVIEARDLNVFYG------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYD 110 (285)
T ss_pred CceEEEEEEEEEEC------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 34688889888764 246999999999999999999999999999999999998621 0148999999987631
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 111 ~~~~~~~~~~~i~~v~q~ 128 (285)
T PRK14254 111 ADVDPVALRRRIGMVFQK 128 (285)
T ss_pred cccchHhhhccEEEEecC
Confidence 13568898863
No 142
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=1.8e-17 Score=125.46 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=65.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|.. ..+|+|.++|+++..
T Consensus 4 ~l~i~~v~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYG------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEEC------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 577888888764 2469999999999999999999999999999999999986411 148999999987631
Q ss_pred -----CCCceEEEEe
Q 033293 107 -----NRRDIVSINL 116 (122)
Q Consensus 107 -----~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 78 ~~~~~~~~~i~~~~q 92 (258)
T PRK14241 78 VDPVAVRRTIGMVFQ 92 (258)
T ss_pred cChHHHhcceEEEcc
Confidence 1346888876
No 143
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.73 E-value=1.3e-17 Score=124.52 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=63.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+.. ..+..+++++||++++|++++|+||||||||||+++|+|+++| .+|+|.++|.++...
T Consensus 1 l~i~~l~~~~~~---~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~ 74 (238)
T cd03249 1 IEFKNVSFRYPS---RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP---TSGEILLDGVDIRDLNLRW 74 (238)
T ss_pred CeEEEEEEecCC---CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEEECCEehhhcCHHH
Confidence 356777776632 1124699999999999999999999999999999999999988 499999999876321
Q ss_pred -CCceEEEEe
Q 033293 108 -RRDIVSINL 116 (122)
Q Consensus 108 -~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 75 ~~~~i~~~~q 84 (238)
T cd03249 75 LRSQIGLVSQ 84 (238)
T ss_pred HHhhEEEECC
Confidence 245888875
No 144
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.5e-17 Score=126.89 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=66.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.+-. ...+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 77 (287)
T PRK13641 2 SIKFENVDYIYSPGT-PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGN 77 (287)
T ss_pred EEEEEEEEEEcCCCC-CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 467888888764200 00135999999999999999999999999999999999999984 9999999998632
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 78 ~~~~~~~~~ig~v~q~ 93 (287)
T PRK13641 78 KNLKKLRKKVSLVFQF 93 (287)
T ss_pred chHHHHHhceEEEEeC
Confidence 12468999874
No 145
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.73 E-value=1.9e-17 Score=118.37 Aligned_cols=71 Identities=27% Similarity=0.463 Sum_probs=59.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCce
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i 111 (122)
++++++++.+.+ .+.++++++|++.+|++++|+||||||||||+++|+|+++|. +|+|.+++. +.+
T Consensus 1 i~~~~~~~~~~~-----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~------~~i 66 (166)
T cd03223 1 IELENLSLATPD-----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEG------EDL 66 (166)
T ss_pred CEEEEEEEEcCC-----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCC------ceE
Confidence 356777776531 246999999999999999999999999999999999999884 999999863 467
Q ss_pred EEEEe
Q 033293 112 VSINL 116 (122)
Q Consensus 112 ~~v~~ 116 (122)
+|+++
T Consensus 67 ~~~~q 71 (166)
T cd03223 67 LFLPQ 71 (166)
T ss_pred EEECC
Confidence 88765
No 146
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.8e-17 Score=125.14 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=65.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. +..+|+++||++.+|++++|+|+||||||||+++|+|+.+ +....+|+|.++|+++..
T Consensus 20 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 20 HILEVKDLSIYYG------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred ceEEEEEEEEEeC------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 3588899988764 2569999999999999999999999999999999999864 111148999999988642
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 94 ~~~~~~~~~~i~~v~q 109 (268)
T PRK14248 94 NINVVNLRREIGMVFQ 109 (268)
T ss_pred cccHHHHhccEEEEec
Confidence 1346899876
No 147
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.73 E-value=3e-17 Score=115.08 Aligned_cols=71 Identities=25% Similarity=0.385 Sum_probs=60.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCce
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i 111 (122)
++++++++.+. ...++++++|.+++|++++|+||||||||||+++|+|+++|. +|+|.++|+ ..+
T Consensus 1 l~~~~l~~~~~------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---~G~i~~~~~------~~i 65 (144)
T cd03221 1 IELENLSKTYG------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVTWGST------VKI 65 (144)
T ss_pred CEEEEEEEEEC------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCe------EEE
Confidence 35677777653 236999999999999999999999999999999999999884 999999985 468
Q ss_pred EEEEee
Q 033293 112 VSINLI 117 (122)
Q Consensus 112 ~~v~~~ 117 (122)
+|+|++
T Consensus 66 ~~~~~l 71 (144)
T cd03221 66 GYFEQL 71 (144)
T ss_pred EEEccC
Confidence 888863
No 148
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.73 E-value=2.7e-17 Score=124.32 Aligned_cols=80 Identities=30% Similarity=0.391 Sum_probs=65.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC-ccccEEEECCEECCCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~-~~~G~i~~~g~~~~~~-- 107 (122)
.++++|+++.+ +..+|+++||.+.+|++++|+|+||||||||+++|+|+++|.. ..+|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~-------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQA-------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEEe-------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 57788888865 2469999999999999999999999999999999999988721 1389999999886421
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
.+.++|+++-
T Consensus 77 ~~~~i~~v~q~ 87 (254)
T PRK10418 77 RGRKIATIMQN 87 (254)
T ss_pred ccceEEEEecC
Confidence 2468898774
No 149
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=122.95 Aligned_cols=81 Identities=33% Similarity=0.393 Sum_probs=65.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+. .+.+++++||++.+|++++|+||||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYN------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEEC------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 578889888764 2469999999999999999999999999999999999853 421238999999987632
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 79 ~~~~~~~~~i~~v~q~ 94 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQ 94 (252)
T ss_pred cchHhhhhcEEEEecC
Confidence 13468999863
No 150
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.9e-17 Score=123.54 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=66.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. +..+++++||.+.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 76 (252)
T PRK14272 3 LLLSAQDVNIYYG------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGP 76 (252)
T ss_pred EEEEEeeeEEEEC------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccC
Confidence 3577888888764 2469999999999999999999999999999999999987631 137999999988642
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 ~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14272 77 RVDPVAMRRRVGMVFQK 93 (252)
T ss_pred ccCHHHhhceeEEEecc
Confidence 13468888763
No 151
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=4.1e-17 Score=128.20 Aligned_cols=85 Identities=21% Similarity=0.167 Sum_probs=69.2
Q ss_pred eeeEEeeEEEEEeeeec----cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRN----GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~----~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..|+++|+++.|..... .....++++|||+|.+|++++|+|+||||||||+++|+|+++|. +|+|.++|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcC
Confidence 45889999998852110 01246999999999999999999999999999999999999884 899999999864
Q ss_pred C--------CCCceEEEEee
Q 033293 106 T--------NRRDIVSINLI 117 (122)
Q Consensus 106 ~--------~~~~i~~v~~~ 117 (122)
. .++.++||+|-
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~ 100 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQN 100 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcC
Confidence 3 13569999874
No 152
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.6e-17 Score=124.85 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=67.6
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~ 106 (122)
...++++|+++.+. .+.+|+++||+|++|++++|+|+||||||||+++|+|+++|. ...+|+|.++|.++..
T Consensus 19 ~~~l~i~nl~~~~~------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~ 92 (276)
T PRK14271 19 APAMAAVNLTLGFA------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92 (276)
T ss_pred CcEEEEeeEEEEEC------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccc
Confidence 45688999999874 256999999999999999999999999999999999998751 0148999999987642
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 93 ~~~~~~~~~~i~~v~q 108 (276)
T PRK14271 93 YRDVLEFRRRVGMLFQ 108 (276)
T ss_pred cchhHHHhhheEEecc
Confidence 1346889876
No 153
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=2.1e-17 Score=121.02 Aligned_cols=72 Identities=29% Similarity=0.418 Sum_probs=58.7
Q ss_pred eEEeeEEEEEeeeeccc-cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 32 LVWEEVKVEAKNLRNGA-KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~-~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
++++|+++.+.+ ... ...+|+++||+|++|++++|+||||||||||+++|+|+.+|. +|+|.++| .
T Consensus 1 l~~~~l~~~~~~--~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~---~G~i~~~g--------~ 67 (204)
T cd03250 1 ISVEDASFTWDS--GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG--------S 67 (204)
T ss_pred CEEeEEEEecCC--CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CCeEEEcC--------E
Confidence 357788877642 000 025999999999999999999999999999999999999884 99999998 4
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 68 i~~~~q 73 (204)
T cd03250 68 IAYVSQ 73 (204)
T ss_pred EEEEec
Confidence 677654
No 154
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-17 Score=126.76 Aligned_cols=80 Identities=31% Similarity=0.462 Sum_probs=64.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-----CccccEEEECCEECCC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN-----VILTGSVQLNRKKGGT 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~-----~~~~G~i~~~g~~~~~ 106 (122)
++++|+++.+. ++.+|+++||.|.+|++++|+||||||||||+++|+|+++|. ...+|+|.++|.++..
T Consensus 2 l~~~nl~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVARR------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEEC------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 67888887763 246999999999999999999999999999999999999872 0127999999987642
Q ss_pred C-----CCceEEEEee
Q 033293 107 N-----RRDIVSINLI 117 (122)
Q Consensus 107 ~-----~~~i~~v~~~ 117 (122)
. ++.++|+|+-
T Consensus 76 ~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 76 IDAPRLARLRAVLPQA 91 (272)
T ss_pred CCHHHHHhhcEEeccc
Confidence 1 2347888763
No 155
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.73 E-value=3.2e-17 Score=122.79 Aligned_cols=77 Identities=25% Similarity=0.362 Sum_probs=64.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++++++.+. .+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+
T Consensus 1 i~i~~l~~~~~------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~ 71 (237)
T TIGR00968 1 IEIANISKRFG------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARD 71 (237)
T ss_pred CEEEEEEEEEC------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 35778877664 246999999999999999999999999999999999999884 9999999988642 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 72 ~~i~~~~q~ 80 (237)
T TIGR00968 72 RKIGFVFQH 80 (237)
T ss_pred cCEEEEecC
Confidence 568898764
No 156
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2e-17 Score=118.46 Aligned_cols=78 Identities=26% Similarity=0.394 Sum_probs=62.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.+ ....++++++|++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 1 l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 1 IEFKNVSFSYPG----RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73 (171)
T ss_pred CEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CCEEEECCEEhhhcCHHH
Confidence 356777776642 1126999999999999999999999999999999999999884 99999999876421
Q ss_pred -CCceEEEEe
Q 033293 108 -RRDIVSINL 116 (122)
Q Consensus 108 -~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 74 ~~~~i~~~~~ 83 (171)
T cd03228 74 LRKNIAYVPQ 83 (171)
T ss_pred HHhhEEEEcC
Confidence 245777764
No 157
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.73 E-value=3.2e-17 Score=120.12 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=63.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEECCEECCCC--
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~g~~~~~~-- 107 (122)
++++|+++.+. +..+++++||++.+|++++|+|+||||||||+++|+|+. +| .+|+|.++|+++...
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~~~~~~~~ 71 (200)
T cd03217 1 LEIKDLHVSVG------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGEDITDLPP 71 (200)
T ss_pred CeEEEEEEEeC------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCEECCcCCH
Confidence 35778877663 246999999999999999999999999999999999994 56 499999999986431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
+..++|+|+-
T Consensus 72 ~~~~~~~i~~v~q~ 85 (200)
T cd03217 72 EERARLGIFLAFQY 85 (200)
T ss_pred HHHhhCcEEEeecC
Confidence 2348888763
No 158
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.73 E-value=9.6e-18 Score=137.93 Aligned_cols=79 Identities=32% Similarity=0.405 Sum_probs=68.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.|.+ +..+|+|+||++++|+++||+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 334 ~I~~~~vsf~Y~~-----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPG-----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL---QGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCC-----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhHHHH
Confidence 5888898888742 235999999999999999999999999999999999999995 99999999986532
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 406 lr~~i~~V~Q~ 416 (529)
T TIGR02868 406 LRRRISVFAQD 416 (529)
T ss_pred HHhheEEEccC
Confidence 3468999874
No 159
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.6e-17 Score=126.66 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=66.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+-. .....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 5 ~~l~i~nl~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 5 KDIILDNVSYTYAKKT-PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLK 80 (289)
T ss_pred ceEEEEEEEEEeCCCC-ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccccc
Confidence 3477888888774200 00125999999999999999999999999999999999999884 9999999987531
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 81 ~~~~~~~~~~~i~~v~q~ 98 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQF 98 (289)
T ss_pred ccccHHHHhccEEEEEeC
Confidence 13468999874
No 160
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.5e-17 Score=125.02 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=66.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 23 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 96 (271)
T PRK14238 23 VVFDTQNLNLWYG------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96 (271)
T ss_pred eEEEEeeeEEEEC------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence 4688999988764 2469999999999999999999999999999999999986 211248999999987631
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 97 ~~~~~~~~~~i~~v~q~ 113 (271)
T PRK14238 97 SYSVEELRTNVGMVFQK 113 (271)
T ss_pred cccHHHHhhhEEEEecC
Confidence 13568998763
No 161
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=2.2e-17 Score=122.85 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=63.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++++++.+.+ ....++++++|++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1 i~~~~l~~~~~~----~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (234)
T cd03251 1 VEFKNVTFRYPG----DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73 (234)
T ss_pred CEEEEEEEEeCC----CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC---CCEEEECCEEhhhCCHHH
Confidence 357788777642 1136999999999999999999999999999999999999884 99999999876421
Q ss_pred -CCceEEEEe
Q 033293 108 -RRDIVSINL 116 (122)
Q Consensus 108 -~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 74 ~~~~i~~~~q 83 (234)
T cd03251 74 LRRQIGLVSQ 83 (234)
T ss_pred HHhhEEEeCC
Confidence 345888865
No 162
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.8e-17 Score=128.25 Aligned_cols=85 Identities=18% Similarity=0.204 Sum_probs=68.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC-ccccEEEECCEECCCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~-~~~G~i~~~g~~~~~~-- 107 (122)
.++++|+++.|..- .....+|++|||+|.+||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 3 LLNVDKLSVHFGDE--SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred eEEEeCeEEEECCC--CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 57899999987531 111469999999999999999999999999999999999987421 2489999999986431
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 81 ~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 81 KERRNLVGAEVAMIFQD 97 (326)
T ss_pred HHHHHHhCCCEEEEecC
Confidence 2369999874
No 163
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.73 E-value=5.5e-17 Score=127.62 Aligned_cols=86 Identities=27% Similarity=0.238 Sum_probs=69.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.. ......+++++||+|.+||+++|+|+||||||||+++|+|+++|....+|+|.++|+++...
T Consensus 11 ~~L~i~~l~~~~~~--~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 11 ALLDVKDLRVTFST--PDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred ceEEEeCeEEEEec--CCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 56899999998753 11124699999999999999999999999999999999999987322389999999986431
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
.+.++||+|-
T Consensus 89 ~~~~~~r~~~i~~v~Q~ 105 (330)
T PRK09473 89 KELNKLRAEQISMIFQD 105 (330)
T ss_pred HHHHHHhcCCEEEEEcC
Confidence 2479999874
No 164
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4e-17 Score=122.92 Aligned_cols=81 Identities=26% Similarity=0.311 Sum_probs=65.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. .+.+|+++||++.+|++++|+|+||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 77 (252)
T PRK14255 4 KIITSSDVHLFYG------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAP 77 (252)
T ss_pred ceEEEEeEEEEEC------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccc
Confidence 3578888888764 2469999999999999999999999999999999999865 311138999999987631
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 78 ~~~~~~~~~~i~~~~q 93 (252)
T PRK14255 78 NEDVVQLRKQVGMVFQ 93 (252)
T ss_pred cccHHHhcCeEEEEEC
Confidence 1346889886
No 165
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3.5e-17 Score=122.14 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=64.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
+.++++++.+. .+.++++++|++++|++++|+|+||||||||+++|+|+++|. +|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~~------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~ 71 (232)
T cd03300 1 IELENVSKFYG------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHK 71 (232)
T ss_pred CEEEeEEEEeC------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhh
Confidence 35777777664 246999999999999999999999999999999999999884 8999999987643 23
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
+.++|+++
T Consensus 72 ~~i~~~~q 79 (232)
T cd03300 72 RPVNTVFQ 79 (232)
T ss_pred cceEEEec
Confidence 56888875
No 166
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.73 E-value=3.4e-17 Score=130.33 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=66.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccc--cEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILT--GSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~--G~i~~~g~~~~~-- 106 (122)
.++++++++.+. ...+|+++||++.+|++++|+|||||||||||++|+|+++|. + |+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~ 75 (362)
T TIGR03258 5 GIRIDHLRVAYG------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAP 75 (362)
T ss_pred EEEEEEEEEEEC------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCC
Confidence 467888888764 246999999999999999999999999999999999999985 7 999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
..+.++|+++-
T Consensus 76 ~~~r~ig~vfQ~ 87 (362)
T TIGR03258 76 PHKRGLALLFQN 87 (362)
T ss_pred HHHCCEEEEECC
Confidence 24678999763
No 167
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.73 E-value=2.7e-17 Score=120.65 Aligned_cols=80 Identities=21% Similarity=0.261 Sum_probs=66.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+.+ ....+++++||.+.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~----~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 6 EIEVENLSVRYAP----DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE---EGKIEIDGIDISTIPLE 78 (207)
T ss_pred eEEEEEEEEEeCC----CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCeEEECCEEhHHCCHH
Confidence 4778888887642 1136999999999999999999999999999999999999884 9999999987632
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 79 ~~~~~i~~v~q~ 90 (207)
T cd03369 79 DLRSSLTIIPQD 90 (207)
T ss_pred HHHhhEEEEecC
Confidence 13568998764
No 168
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.72 E-value=3.5e-17 Score=123.28 Aligned_cols=64 Identities=31% Similarity=0.385 Sum_probs=57.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.++++++++.+. ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~ 66 (253)
T TIGR02323 3 LLQVSGLSKSYG------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRS 66 (253)
T ss_pred eEEEeeeEEEeC------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEEeccc
Confidence 477888888764 246899999999999999999999999999999999999884 9999999875
No 169
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.72 E-value=3.3e-17 Score=134.36 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=66.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. ++.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 4 ~i~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~ 74 (501)
T PRK10762 4 LLQLKGIDKAFP------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPK 74 (501)
T ss_pred eEEEeeeEEEeC------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHH
Confidence 578888888764 246999999999999999999999999999999999999884 99999999886421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 75 ~~~~~~i~~v~q~ 87 (501)
T PRK10762 75 SSQEAGIGIIHQE 87 (501)
T ss_pred HHHhCCEEEEEcc
Confidence 3468999873
No 170
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=4.2e-17 Score=124.97 Aligned_cols=81 Identities=22% Similarity=0.259 Sum_probs=67.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.+ .....+|+++||++.+|++++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~---~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEK---ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCC---CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHH
Confidence 5788999988742 11235999999999999999999999999999999999999884 9999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 78 ~~~~~i~~v~q~ 89 (277)
T PRK13642 78 NLRRKIGMVFQN 89 (277)
T ss_pred HHhcceEEEEEC
Confidence 13468998874
No 171
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=3.6e-17 Score=125.24 Aligned_cols=83 Identities=23% Similarity=0.169 Sum_probs=66.9
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~ 106 (122)
...++++++++.+. ...+|+++||.+++|++++|+||||||||||+++|+|++++.. ..+|+|.++|+++..
T Consensus 18 ~~~l~~~nl~~~~~------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~ 91 (274)
T PRK14265 18 HSVFEVEGVKVFYG------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYD 91 (274)
T ss_pred CceEEEeeEEEEeC------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccc
Confidence 34788899988764 2469999999999999999999999999999999999976311 148999999987631
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 92 ~~~~~~~~~~~i~~v~q~ 109 (274)
T PRK14265 92 SQINSVKLRRQVGMVFQR 109 (274)
T ss_pred ccchhHHHhhcEEEEccC
Confidence 13568898763
No 172
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.72 E-value=2.2e-17 Score=122.41 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=66.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+.+ .....+|+++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 10 ~~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 10 GIVKFQNVTFAYPT---RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPISQYEH 83 (226)
T ss_pred ceEEEEEEEEEeCC---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCCchHHcCH
Confidence 45888999988742 11236999999999999999999999999999999999999884 9999999987532
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 84 ~~~~~~i~~~~q 95 (226)
T cd03248 84 KYLHSKVSLVGQ 95 (226)
T ss_pred HHHHhhEEEEec
Confidence 1346888876
No 173
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.72 E-value=2.3e-17 Score=121.71 Aligned_cols=79 Identities=29% Similarity=0.350 Sum_probs=64.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+ ....+++++||++++|++++|+||||||||||+++|+|+.+|. +|+|.++|+++..
T Consensus 3 l~~~~l~~~~~~----~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 3 IEFRNVSFSYPN----QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPAD 75 (220)
T ss_pred EEEEEEEEEcCC----CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHH
Confidence 567777776531 1245999999999999999999999999999999999999884 9999999987532
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 76 ~~~~i~~~~q~ 86 (220)
T cd03245 76 LRRNIGYVPQD 86 (220)
T ss_pred HHhhEEEeCCC
Confidence 12458888763
No 174
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.72 E-value=4e-17 Score=123.78 Aligned_cols=71 Identities=25% Similarity=0.480 Sum_probs=61.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++++++.+. +..+|+++||.+++|++++|+||||||||||+++|+|+++|. +|+|.+++. ..
T Consensus 4 ~l~~~~l~~~~~------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~~~------~~ 68 (251)
T PRK09544 4 LVSLENVSVSFG------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGVIKRNGK------LR 68 (251)
T ss_pred EEEEeceEEEEC------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCc------cC
Confidence 578888888764 246999999999999999999999999999999999999884 999999862 35
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 69 i~~v~q 74 (251)
T PRK09544 69 IGYVPQ 74 (251)
T ss_pred EEEecc
Confidence 788775
No 175
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4e-17 Score=122.99 Aligned_cols=82 Identities=27% Similarity=0.285 Sum_probs=66.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. .+.+|+++||+|.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.++..
T Consensus 3 ~~l~~~~l~~~~~------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~ 76 (251)
T PRK14249 3 PKIKIRGVNFFYH------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76 (251)
T ss_pred ceEEEEEEEEEEC------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccc
Confidence 3577888888763 2469999999999999999999999999999999999988731 125999999987632
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 77 ~~~~~~~~~~i~~v~q~ 93 (251)
T PRK14249 77 NLDVVNLRKRVGMVFQQ 93 (251)
T ss_pred ccChHHhhceEEEEecC
Confidence 13568898763
No 176
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=5e-17 Score=124.92 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+.+ ....+++++||+|.+|++++|+||||||||||+++|+|+++|....+|+|.++|.++...
T Consensus 5 ~l~i~~l~~~~~~----~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSFTYPD----SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEEEcCC----CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 4778888887632 123599999999999999999999999999999999999988411139999999987431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 81 ~~~~~ig~v~q~ 92 (282)
T PRK13640 81 DIREKVGIVFQN 92 (282)
T ss_pred HHHhheEEEEEC
Confidence 3468999874
No 177
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.8e-17 Score=122.43 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=65.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. ...+|+++||+|.+|++++|+|+||||||||+++|+|+++ |....+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYG------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEEC------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 478888888764 2469999999999999999999999999999999999986 211148999999987632
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 78 ~~~~~~~~~i~~~~q~ 93 (251)
T PRK14251 78 MDLVELRKEVGMVFQQ 93 (251)
T ss_pred chHHHhhccEEEEecC
Confidence 13458888763
No 178
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.3e-17 Score=128.47 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=58.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++++|+++.+.+-. .....+|+++||.|.+|++++|+||||||||||+++|+|+++|. +|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~-~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKL-PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCC-CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceec
Confidence 478889998875311 01235999999999999999999999999999999999999984 89999987653
No 179
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.72 E-value=5.7e-17 Score=133.41 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=67.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+. ++.+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 80 (510)
T PRK15439 10 PLLCARSISKQYS------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTP 80 (510)
T ss_pred ceEEEEeEEEEeC------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCH
Confidence 4688999988774 246999999999999999999999999999999999999884 99999999886431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 81 ~~~~~~~i~~v~q~ 94 (510)
T PRK15439 81 AKAHQLGIYLVPQE 94 (510)
T ss_pred HHHHhCCEEEEecc
Confidence 2358899873
No 180
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6.8e-17 Score=126.90 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=68.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-CccccEEEECCEECCCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN-VILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~-~~~~G~i~~~g~~~~~~-- 107 (122)
.|+++|+++.|.. ......+++++||+|.+||+++|+|+||||||||+++|+|++++. ...+|+|.|+|+++...
T Consensus 3 ~L~v~~l~~~y~~--~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 3 LLDIRNLTIEFKT--SDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred eEEEeeeEEEEeC--CCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 5789999998742 112346999999999999999999999999999999999998631 12489999999986421
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 81 ~~~~~~~~~~i~~v~Q~ 97 (330)
T PRK15093 81 RERRKLVGHNVSMIFQE 97 (330)
T ss_pred HHHHHHhCCCEEEEecC
Confidence 2469999874
No 181
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.72 E-value=4.5e-17 Score=120.59 Aligned_cols=80 Identities=26% Similarity=0.331 Sum_probs=65.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+ ......+++++||++.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 2 l~~~~l~~~~~~--~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~ 76 (220)
T TIGR02982 2 ISIRNLNHYYGH--GSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKE 76 (220)
T ss_pred EEEEEEEEEccC--CCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhH
Confidence 567888887642 111256999999999999999999999999999999999999884 9999999998642
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 77 ~~~~~~~i~~~~q 89 (220)
T TIGR02982 77 LVQLRRNIGYIFQ 89 (220)
T ss_pred HHHHHhheEEEcC
Confidence 1346888875
No 182
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.72 E-value=5.3e-17 Score=124.04 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=66.9
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~ 106 (122)
...++++|+++.+. +..+|+++||.+++|++++|+||||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 23 ~~~l~~~nl~~~~~------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLNLFYG------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEEEEEC------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 34688899988774 246999999999999999999999999999999999998631 1248999999988642
Q ss_pred -------CCCceEEEEe
Q 033293 107 -------NRRDIVSINL 116 (122)
Q Consensus 107 -------~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 97 ~~~~~~~~~~~i~~v~q 113 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQ 113 (272)
T ss_pred cccCHHHHhccEEEEec
Confidence 1356889876
No 183
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=4.5e-17 Score=124.27 Aligned_cols=84 Identities=24% Similarity=0.226 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeee---eccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-
Q 033293 31 HLVWEEVKVEAKNL---RNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~---~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~- 106 (122)
.++++|+++.+.+. ....++.+++++||++.+|++++|+||||||||||+++|+|+.+| .+|+|.++|.++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP---SQGNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEecccc
Confidence 47888998877420 000125699999999999999999999999999999999999988 49999999987632
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 80 ~~~~~~~~~~~i~~v~q~ 97 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQD 97 (268)
T ss_pred ChhHHHHHHhcEEEEEcC
Confidence 13468999874
No 184
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=3e-17 Score=122.30 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=62.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++++++.+.+ ...++++++|.+.+|++++|+||||||||||+++|+|+.+|. +|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~v~~~g~~~~~~~~~~ 72 (236)
T cd03253 1 IEFENVTFAYDP-----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDS 72 (236)
T ss_pred CEEEEEEEEeCC-----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEhhhCCHHH
Confidence 356777776531 245999999999999999999999999999999999999884 9999999987642
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 73 ~~~~i~~~~q 82 (236)
T cd03253 73 LRRAIGVVPQ 82 (236)
T ss_pred HHhhEEEECC
Confidence 1345788864
No 185
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=2.5e-17 Score=124.47 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=67.7
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
.+.++++++++.+. ++.++++++|+|++||+++|+||||||||||||+|.|+++|. +|+|.++|+++..
T Consensus 6 ~~~I~vr~v~~~fG------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls 76 (263)
T COG1127 6 EPLIEVRGVTKSFG------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLS 76 (263)
T ss_pred cceEEEeeeeeecC------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccC
Confidence 46788999988764 468999999999999999999999999999999999999995 9999999998643
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.+++++++.|
T Consensus 77 ~~~~~~ir~r~GvlFQ 92 (263)
T COG1127 77 EEELYEIRKRMGVLFQ 92 (263)
T ss_pred HHHHHHHHhheeEEee
Confidence 2345777765
No 186
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=4.9e-17 Score=133.54 Aligned_cols=79 Identities=20% Similarity=0.257 Sum_probs=66.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
+.++++|+++.+. ++.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 4 ~~l~~~~l~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 4 PYISMAGIGKSFG------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDH 74 (510)
T ss_pred ceEEEeeeEEEcC------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCH
Confidence 3578888888763 246999999999999999999999999999999999999884 99999999986431
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 75 ~~~~~~~i~~v~q~ 88 (510)
T PRK09700 75 KLAAQLGIGIIYQE 88 (510)
T ss_pred HHHHHCCeEEEeec
Confidence 2458999863
No 187
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=6.1e-17 Score=121.91 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=64.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc---CCCCccccEEEECCEECCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL---SKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~---~~~~~~~G~i~~~g~~~~~ 106 (122)
+.++++++++.+. .+.+|+++||++.+|++++|+||||||||||+++|+|+. ++. ..+|+|.++|+++..
T Consensus 2 ~~l~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYG------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEEC------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEeccc
Confidence 4577888888764 246999999999999999999999999999999999973 331 138999999988642
Q ss_pred -------CCCceEEEEee
Q 033293 107 -------NRRDIVSINLI 117 (122)
Q Consensus 107 -------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 75 ~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQR 92 (250)
T ss_pred ccccHHHHhhheEEEecC
Confidence 13468999863
No 188
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.3e-17 Score=118.78 Aligned_cols=81 Identities=35% Similarity=0.639 Sum_probs=64.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT-N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~-~ 107 (122)
.++++++++.+.+- .....+++++||++++|++++|+||||||||||+++|+|+.. + .+|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~~~~~--~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---~~G~i~~~g~~~~~~~ 77 (192)
T cd03232 3 VLTWKNLNYTVPVK--GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGRPLDKNF 77 (192)
T ss_pred EEEEeeeEEEecCC--CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---cceEEEECCEehHHHh
Confidence 46788888877421 012469999999999999999999999999999999999863 4 49999999988632 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 78 ~~~i~~~~q 86 (192)
T cd03232 78 QRSTGYVEQ 86 (192)
T ss_pred hhceEEecc
Confidence 356888876
No 189
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.9e-17 Score=121.50 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=65.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. ++.+++++||++.+|++++|+||||||||||+++|+|++. |....+|+|.++|.++..
T Consensus 2 ~~l~~~~v~~~~~------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~ 75 (250)
T PRK14266 2 YRIEVENLNTYFD------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP 75 (250)
T ss_pred cEEEEEeEEEEeC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc
Confidence 3577888887763 2469999999999999999999999999999999999864 211248999999988642
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 76 ~~~~~~~~~~i~~~~q 91 (250)
T PRK14266 76 AVDVVELRKKVGMVFQ 91 (250)
T ss_pred cccHHHHhhheEEEec
Confidence 1356899985
No 190
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.71 E-value=3.4e-17 Score=121.66 Aligned_cols=81 Identities=31% Similarity=0.539 Sum_probs=66.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC---CCCccccEEEECCEECCC-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS---KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~---~~~~~~G~i~~~g~~~~~- 106 (122)
.+.++++++.+.+.. ..+.+++++||++++|++++|+||||||||||+++|+|+++ | .+|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWN--KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCc--cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEEECCEECChH
Confidence 466888888875311 12579999999999999999999999999999999999998 6 49999999987642
Q ss_pred -CCCceEEEEe
Q 033293 107 -NRRDIVSINL 116 (122)
Q Consensus 107 -~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 78 ~~~~~i~~~~q 88 (226)
T cd03234 78 QFQKCVAYVRQ 88 (226)
T ss_pred HhcccEEEeCC
Confidence 2456888875
No 191
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.7e-17 Score=123.88 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGTN 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~~ 107 (122)
..++++|+.+.|. .+.+|++|++.|++++++|||||||||||||||++..+.. |.++.+|+|.++|+++...
T Consensus 6 ~~~~~~~l~~yYg------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYG------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEEC------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 5678889998875 4679999999999999999999999999999999998753 5667899999999987543
Q ss_pred -------CCceEEEEe
Q 033293 108 -------RRDIVSINL 116 (122)
Q Consensus 108 -------~~~i~~v~~ 116 (122)
+++++.|.|
T Consensus 80 ~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 80 KVDVVELRRRVGMVFQ 95 (253)
T ss_pred CCCHHHHHHHheeecc
Confidence 566787754
No 192
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=5.6e-17 Score=118.22 Aligned_cols=75 Identities=24% Similarity=0.346 Sum_probs=60.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-CCc
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-RRD 110 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-~~~ 110 (122)
++++++++.+. .+.+++ +||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++... .+.
T Consensus 2 l~~~~l~~~~~------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIE------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS---SGNIYYKNCNINNIAKPY 71 (195)
T ss_pred eEEEEeeEEEC------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCcccChhhhhh
Confidence 56788887763 234555 99999999999999999999999999999999884 99999999876432 234
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+++
T Consensus 72 ~~~~~~ 77 (195)
T PRK13541 72 CTYIGH 77 (195)
T ss_pred EEeccC
Confidence 677764
No 193
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.1e-17 Score=122.69 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=65.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. ++.+|+++||++.+|++++|+||||||||||+++|+|+++|. ...+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYG------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEEC------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 577888888764 246999999999999999999999999999999999998751 0148999999987631
Q ss_pred ----CCCceEEEEee
Q 033293 107 ----NRRDIVSINLI 117 (122)
Q Consensus 107 ----~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 77 ~~~~~~~~i~~~~q~ 91 (249)
T PRK14253 77 DVADLRIKVGMVFQK 91 (249)
T ss_pred chHHHHhheeEEecC
Confidence 13468898763
No 194
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.71 E-value=2.5e-17 Score=127.65 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=57.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----CCceEEEEee
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN----RRDIVSINLI 117 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~----~~~i~~v~~~ 117 (122)
..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++... ++.++|+|+-
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 74 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQY 74 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCC
Confidence 56999999999999999999999999999999999999984 99999999886432 3468999863
No 195
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=7.1e-17 Score=132.55 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=66.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. ..+|+|.++|.++...
T Consensus 5 ~l~~~nl~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 5 LLEMKNITKTFG------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIR 77 (506)
T ss_pred eEEEeeeEEEeC------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHH
Confidence 588889888763 246999999999999999999999999999999999998751 1489999999987432
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 78 ~~~~~~i~~v~q~ 90 (506)
T PRK13549 78 DTERAGIAIIHQE 90 (506)
T ss_pred HHHHCCeEEEEec
Confidence 2468999873
No 196
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.71 E-value=8.2e-17 Score=132.06 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=66.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 4 ~l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 4 YLSFDGIGKTFP------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTT 74 (501)
T ss_pred eEEEeeeEEEEC------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHH
Confidence 578888888763 246999999999999999999999999999999999999884 99999999886421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 75 ~~~~~~i~~v~q~ 87 (501)
T PRK11288 75 AALAAGVAIIYQE 87 (501)
T ss_pred HHHhCCEEEEEec
Confidence 3568999873
No 197
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=6.9e-17 Score=118.67 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=60.7
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++|+++.+.+ .. .++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .+
T Consensus 1 i~~~~l~~~~~~------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGE------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCC------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhH
Confidence 356777776532 22 2999999999999999999999999999999999884 9999999987642 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+++-
T Consensus 70 ~~i~~~~q~ 78 (211)
T cd03298 70 RPVSMLFQE 78 (211)
T ss_pred ccEEEEecc
Confidence 468888763
No 198
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.71 E-value=4.5e-17 Score=137.84 Aligned_cols=81 Identities=27% Similarity=0.365 Sum_probs=69.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ .++.+|+++||++++|+.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 450 ~~I~~~nvsf~Y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 450 GAIEVDRVTFRYRP----DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDV 522 (686)
T ss_pred ceEEEEEEEEEcCC----CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCH
Confidence 35888999988742 1356999999999999999999999999999999999999995 9999999998753
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 523 ~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 523 QAVRRQLGVVLQN 535 (686)
T ss_pred HHHHhccEEEccC
Confidence 24679999873
No 199
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=6.4e-17 Score=122.58 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=65.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCc--cccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVI--LTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~--~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. ...+++++||++.+|++++|+|+||||||||+++|+|++++... .+|+|.++|+++..
T Consensus 6 ~~l~~~~l~~~~~------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (259)
T PRK14260 6 PAIKVKDLSFYYN------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP 79 (259)
T ss_pred ceEEEEEEEEEEC------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc
Confidence 3578888888764 24699999999999999999999999999999999999875211 38999999987632
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.+..++|+++
T Consensus 80 ~~~~~~~~~~i~~v~q 95 (259)
T PRK14260 80 RININRLRRQIGMVFQ 95 (259)
T ss_pred ccchHhhhhheEEEec
Confidence 1346888876
No 200
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.71 E-value=6.4e-17 Score=122.59 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=66.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++++++.+.+ ....+++++||.+++|++++|+|+||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~~----~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~ 90 (257)
T cd03288 18 GEIKIHDLCVRYEN----NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF---DGKIVIDGIDISKLPL 90 (257)
T ss_pred ceEEEEEEEEEeCC----CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC---CCeEEECCEEhhhCCH
Confidence 45888888887742 1246999999999999999999999999999999999999884 9999999988643
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 91 ~~~~~~i~~v~q 102 (257)
T cd03288 91 HTLRSRLSIILQ 102 (257)
T ss_pred HHHhhhEEEECC
Confidence 1346888875
No 201
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.71 E-value=6.5e-17 Score=119.75 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=63.4
Q ss_pred eEEeeEEEEEeeeeccc-cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC--CE--ECCC
Q 033293 32 LVWEEVKVEAKNLRNGA-KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN--RK--KGGT 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~-~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~--g~--~~~~ 106 (122)
++++|+++.+....... ...+++++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++ |. ++..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD---SGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEEecCCCccchhh
Confidence 67888888774211111 146999999999999999999999999999999999999884 8999998 42 3211
Q ss_pred ---------CCCceEEEEee
Q 033293 107 ---------NRRDIVSINLI 117 (122)
Q Consensus 107 ---------~~~~i~~v~~~ 117 (122)
..+.++|+++-
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred cCHHHHHHHHhcceEEEecc
Confidence 12458888764
No 202
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=123.20 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=64.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~- 106 (122)
..++++++++.+. ...+|+++||.|.+|++++|+||||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 38 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 38 PHVVAKNFSIYYG------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred eEEEEeeeEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 4578888887763 2469999999999999999999999999999999999864 211148999999987532
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 112 ~~~~~~~~~~i~~v~q 127 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQ 127 (286)
T ss_pred ccchHHhhhcEEEECC
Confidence 1346889876
No 203
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.70 E-value=7.1e-17 Score=121.06 Aligned_cols=77 Identities=34% Similarity=0.455 Sum_probs=62.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEECCEECCC---
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~g~~~~~--- 106 (122)
++++|+++.+. ++.+++++||.|++|++++|+|+||||||||+++|+|++ +| .+|+|.++|.++..
T Consensus 2 i~~~nl~~~~~------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 2 LSIKDLHVSVE------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLELSP 72 (248)
T ss_pred eEEEEEEEEeC------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEEECCCccccCCH
Confidence 67788887763 246999999999999999999999999999999999995 46 48999999987532
Q ss_pred ---CCCceEEEEee
Q 033293 107 ---NRRDIVSINLI 117 (122)
Q Consensus 107 ---~~~~i~~v~~~ 117 (122)
.+..++|+++-
T Consensus 73 ~~~~~~~i~~~~q~ 86 (248)
T PRK09580 73 EDRAGEGIFMAFQY 86 (248)
T ss_pred HHHhhcceEEEecC
Confidence 12358887654
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1e-16 Score=119.99 Aligned_cols=75 Identities=28% Similarity=0.424 Sum_probs=62.8
Q ss_pred EEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CCC
Q 033293 33 VWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NRR 109 (122)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~~ 109 (122)
+++++++.+. .+++++++|+|.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.++.. .++
T Consensus 2 ~~~~l~~~~~-------~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 2 KVENLSKDWK-------EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71 (235)
T ss_pred eeEeEEEEeC-------CceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHc
Confidence 4667777653 23899999999999999999999999999999999999884 9999999988643 245
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+++-
T Consensus 72 ~i~~~~q~ 79 (235)
T cd03299 72 DISYVPQN 79 (235)
T ss_pred CEEEEeec
Confidence 68888763
No 205
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.70 E-value=1.1e-17 Score=127.18 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=64.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-CC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-RR 109 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-~~ 109 (122)
.+++++++..+. ++.+++++||.+++|++.+++|+|||||||.+|+|+|+++|. +|+|.++|+++... ..
T Consensus 2 ~L~ie~vtK~Fg------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~~~ 72 (300)
T COG4152 2 ALEIEGVTKSFG------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72 (300)
T ss_pred ceEEecchhccC------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhhhh
Confidence 355666665553 467999999999999999999999999999999999999994 99999999987543 44
Q ss_pred ceEEEE
Q 033293 110 DIVSIN 115 (122)
Q Consensus 110 ~i~~v~ 115 (122)
+|+|+|
T Consensus 73 rIGyLP 78 (300)
T COG4152 73 RIGYLP 78 (300)
T ss_pred hcccCh
Confidence 688886
No 206
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.70 E-value=8.4e-17 Score=118.59 Aligned_cols=74 Identities=31% Similarity=0.446 Sum_probs=61.4
Q ss_pred EEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CCC
Q 033293 33 VWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NRR 109 (122)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~~ 109 (122)
+++|+++.+. .++.++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .++
T Consensus 2 ~~~~l~~~~~--------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 2 ALDKVRYEYE--------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred eEEeeeEEeC--------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhcc
Confidence 5677777653 2457999999999999999999999999999999999884 9999999988632 235
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 71 ~i~~v~q~ 78 (213)
T TIGR01277 71 PVSMLFQE 78 (213)
T ss_pred ceEEEecc
Confidence 68898764
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=7.9e-17 Score=121.39 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=62.1
Q ss_pred EEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEECCEECCC----
Q 033293 33 VWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~~g~~~~~---- 106 (122)
+++++++.+. ...+++++||++.+|++++|+|+||||||||+++|+|+.+ |....+|+|.++|+++..
T Consensus 7 ~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 80 (251)
T PRK14244 7 SVKNLNLWYG------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN 80 (251)
T ss_pred EeeeEEEEEC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc
Confidence 4667776653 2469999999999999999999999999999999999976 211248999999987532
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 81 ~~~~~~~i~~v~q 93 (251)
T PRK14244 81 VVLLRAKVGMVFQ 93 (251)
T ss_pred hHHHhhhEEEEec
Confidence 1346889876
No 208
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=3.4e-17 Score=122.30 Aligned_cols=67 Identities=36% Similarity=0.603 Sum_probs=60.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
+|+.+|+++... ++++++++||++.+||+++|+|||||||||||+.|+|.+.|. +|++.++|.+...
T Consensus 1 mi~a~nls~~~~------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~ 67 (259)
T COG4559 1 MIRAENLSYSLA------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNS 67 (259)
T ss_pred CeeeeeeEEEee------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhh
Confidence 367788888774 478999999999999999999999999999999999999985 9999999998643
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=8.7e-17 Score=131.68 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=65.2
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. ..+|+|.++|+++...
T Consensus 2 l~i~~l~~~~~------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~ 74 (500)
T TIGR02633 2 LEMKGIVKTFG------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRD 74 (500)
T ss_pred EEEEeEEEEeC------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 56788887763 246999999999999999999999999999999999998751 1389999999986431
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 75 ~~~~~i~~v~q~ 86 (500)
T TIGR02633 75 TERAGIVIIHQE 86 (500)
T ss_pred HHhCCEEEEeec
Confidence 2468999874
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.1e-16 Score=121.82 Aligned_cols=80 Identities=25% Similarity=0.221 Sum_probs=64.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC--CCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK--NVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~--~~~~~G~i~~~g~~~~~-- 106 (122)
.++++++++.+. ...+|+++||++++|++++|+|+||||||||+++|+|++.+ ....+|+|.++|+++..
T Consensus 10 ~l~i~~v~~~~~------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLNVYYG------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeEEEEC------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 588899988764 24699999999999999999999999999999999998753 11148999999987631
Q ss_pred -----CCCceEEEEe
Q 033293 107 -----NRRDIVSINL 116 (122)
Q Consensus 107 -----~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 84 ~~~~~~~~~i~~v~q 98 (264)
T PRK14243 84 VDPVEVRRRIGMVFQ 98 (264)
T ss_pred cChHHHhhhEEEEcc
Confidence 1346888876
No 211
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.2e-16 Score=119.18 Aligned_cols=75 Identities=31% Similarity=0.386 Sum_probs=61.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++++++.+.+ . ..++||++.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~~------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~ 70 (232)
T PRK10771 2 LKLTDITWLYHH------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSR 70 (232)
T ss_pred eEEEEEEEEECC------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhh
Confidence 578888887642 1 23899999999999999999999999999999999884 9999999987643 23
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 71 ~~i~~~~q~ 79 (232)
T PRK10771 71 RPVSMLFQE 79 (232)
T ss_pred ccEEEEecc
Confidence 568898863
No 212
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.70 E-value=8.3e-17 Score=118.88 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=60.6
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-------
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT------- 106 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~------- 106 (122)
+.++.+.+. ....+++++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|.++..
T Consensus 3 ~~~~~~~~~-----~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 3 VTNGYFSWG-----SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL---EGKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeEEecC-----CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCcccccccccccc
Confidence 445555543 2356999999999999999999999999999999999999884 9999999986532
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+++-
T Consensus 75 ~~~~~~i~~~~q~ 87 (218)
T cd03290 75 SRNRYSVAYAAQK 87 (218)
T ss_pred hhhcceEEEEcCC
Confidence 12458888763
No 213
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=121.23 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=65.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC--ccccEEEECCEECC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV--ILTGSVQLNRKKGG-- 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~--~~~G~i~~~g~~~~-- 105 (122)
..++++++++.+. .+.+|+++||++.+|++++|+|+||||||||+++|+|+++|.. ..+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~~------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 15 QKSEVNKLNFYYG------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred ceEEEEEEEEEEC------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 4588899988774 2469999999999999999999999999999999999987421 14899999987642
Q ss_pred -------CCCCceEEEEee
Q 033293 106 -------TNRRDIVSINLI 117 (122)
Q Consensus 106 -------~~~~~i~~v~~~ 117 (122)
..++.++|+++-
T Consensus 89 ~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred ccccCHHHHhccEEEEccC
Confidence 113468888763
No 214
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.70 E-value=4.8e-17 Score=138.01 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.. ..+.+|+++||++++|+.+||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 476 ~~I~~~~vsf~y~~----~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 548 (710)
T TIGR03796 476 GYVELRNITFGYSP----LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPR 548 (710)
T ss_pred CeEEEEEEEEecCC----CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCH
Confidence 35888999988752 1356999999999999999999999999999999999999995 9999999998643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 549 ~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 549 EVLANSVAMVDQD 561 (710)
T ss_pred HHHHhheeEEecC
Confidence 25679999873
No 215
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=1.3e-17 Score=126.01 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=60.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
..+++++++.+|. +-.++++|||++++|++++||||||||||||+++|+|+++|+ +|+|.++|+++..
T Consensus 3 ~lL~v~~l~k~FG------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~ 70 (250)
T COG0411 3 PLLEVRGLSKRFG------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITG 70 (250)
T ss_pred ceeeeccceeecC------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCC
Confidence 4567788887764 457999999999999999999999999999999999999995 9999999998754
No 216
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.70 E-value=7e-17 Score=137.64 Aligned_cols=81 Identities=27% Similarity=0.344 Sum_probs=70.5
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
...++++|++++|.. .+..+|+|+|++|++||++||+|+||||||||+|+|+|++.|. +|+|.+||.++..
T Consensus 469 ~g~I~~~nvsf~y~~----~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~ 541 (709)
T COG2274 469 QGEIEFENVSFRYGP----DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDID 541 (709)
T ss_pred CceEEEEEEEEEeCC----CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcC
Confidence 346899999998863 2236999999999999999999999999999999999999995 9999999998643
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
-++.++||||
T Consensus 542 ~~~lR~~ig~V~Q 554 (709)
T COG2274 542 LASLRRQVGYVLQ 554 (709)
T ss_pred HHHHHhheeEEcc
Confidence 3678999987
No 217
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.8e-17 Score=127.17 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=62.2
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE---ECC---
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK---KGG--- 105 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~---~~~--- 105 (122)
+.+++++..+. ...++++|++.|+.||++||+|||||||||||++|||+..|. .|.|.++|+ +..
T Consensus 3 i~i~~~~~~~~------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 3 IRINNVKKRFG------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred eeehhhhhhcc------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccc
Confidence 44555555443 246888999999999999999999999999999999999995 999999999 432
Q ss_pred CCCCceEEEEe
Q 033293 106 TNRRDIVSINL 116 (122)
Q Consensus 106 ~~~~~i~~v~~ 116 (122)
...+.++||.|
T Consensus 74 ~~~R~VGfvFQ 84 (345)
T COG1118 74 VRDRKVGFVFQ 84 (345)
T ss_pred hhhcceeEEEe
Confidence 34577999865
No 218
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.69 E-value=7.7e-17 Score=120.79 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=54.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----CCCceEEEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----NRRDIVSIN 115 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----~~~~i~~v~ 115 (122)
+.+|+++||.+++|++++|+|+||||||||+++|+|+++|. +|+|.++|++... .++.++|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEc
Confidence 46999999999999999999999999999999999999884 9999999987432 234678875
No 219
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.69 E-value=2.9e-17 Score=120.72 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=65.2
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++|++++..|.+ +..+|+++||.+++||++-|+||||||||||||+|.+...|. .|+|.++|+++..
T Consensus 2 I~f~~V~k~Y~~-----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~ 73 (223)
T COG2884 2 IRFENVSKAYPG-----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGRE 73 (223)
T ss_pred eeehhhhhhcCC-----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccc
Confidence 567777776643 456999999999999999999999999999999999999994 9999999998643
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
-++.++.|.|
T Consensus 74 iP~LRR~IGvVFQ 86 (223)
T COG2884 74 IPFLRRQIGVVFQ 86 (223)
T ss_pred cchhhheeeeEee
Confidence 2566887765
No 220
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.69 E-value=7.2e-17 Score=133.97 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=68.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.+ ....+|+++|+++++|+.+||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 341 ~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 341 DIEFRNVTFTYPG----KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLA 413 (582)
T ss_pred eEEEEEEEEecCC----CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHH
Confidence 5888898887742 1246999999999999999999999999999999999999994 9999999998653
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+||=
T Consensus 414 ~~~~~i~~v~Q~ 425 (582)
T PRK11176 414 SLRNQVALVSQN 425 (582)
T ss_pred HHHhhceEEccC
Confidence 24568999873
No 221
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-16 Score=120.49 Aligned_cols=81 Identities=21% Similarity=0.138 Sum_probs=64.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~- 106 (122)
..+.++++++.+. +..+++++||.+++|++++|+|+||||||||+++|+|+++|. ...+|+|.++|+++..
T Consensus 7 ~~~~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDKIFYG------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEEEEeC------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 4567777777653 356999999999999999999999999999999999998751 1148999999988632
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 81 ~~~~~~~~~~i~~v~q 96 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQ 96 (261)
T ss_pred ccchHhhhhceEEEec
Confidence 1345888875
No 222
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=9.6e-17 Score=124.97 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=67.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
++++++++..+..- ......++++||+.|++|+++||+|.||||||||+|++.++..|+ +|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~ 76 (339)
T COG1135 1 MIELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEA 76 (339)
T ss_pred CeEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChH
Confidence 36788888777531 112346999999999999999999999999999999999999995 9999999987532
Q ss_pred ----CCCceEEEEe
Q 033293 107 ----NRRDIVSINL 116 (122)
Q Consensus 107 ----~~~~i~~v~~ 116 (122)
.++++++|+|
T Consensus 77 ~Lr~~R~~IGMIFQ 90 (339)
T COG1135 77 ELRQLRQKIGMIFQ 90 (339)
T ss_pred HHHHHHhhccEEec
Confidence 3567888865
No 223
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.69 E-value=2.1e-16 Score=118.89 Aligned_cols=66 Identities=30% Similarity=0.453 Sum_probs=57.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC--cCCCCccccEEEECCEECC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR--LSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl--~~~~~~~~G~i~~~g~~~~ 105 (122)
.++++++++.+. +..+|+++||++++|++++|+|+||||||||+++|+|+ ++| .+|+|.++|.++.
T Consensus 7 ~l~~~~l~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~~~~ 74 (252)
T CHL00131 7 ILEIKNLHASVN------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGESIL 74 (252)
T ss_pred eEEEEeEEEEeC------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCEEcc
Confidence 578888888764 24699999999999999999999999999999999998 355 4999999998764
No 224
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=120.26 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=68.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC----
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG---- 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~---- 105 (122)
..++++++++.+.+ ...+++++||.+++|++++|+|+||||||||+++|+|++.|. +|.|.++|.+..
T Consensus 2 ~~i~~~~l~~~y~~-----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPG-----RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCC-----CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhh
Confidence 35678888888753 257999999999999999999999999999999999999994 899999998754
Q ss_pred --CCCCceEEEEeee
Q 033293 106 --TNRRDIVSINLIK 118 (122)
Q Consensus 106 --~~~~~i~~v~~~~ 118 (122)
..++.++||.|--
T Consensus 74 ~~~~~~~vG~VfQnp 88 (235)
T COG1122 74 LLELRQKVGLVFQNP 88 (235)
T ss_pred HHHhhcceEEEEECc
Confidence 3467799997643
No 225
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.69 E-value=7.5e-17 Score=134.31 Aligned_cols=80 Identities=19% Similarity=0.328 Sum_probs=68.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ +..+|+++||++++|+++||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 339 ~~i~~~~v~f~y~~-----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 339 GRIDIDNVSFAYRD-----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSH 410 (592)
T ss_pred CeEEEEEEEEEeCC-----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCH
Confidence 35888898887742 246999999999999999999999999999999999999995 9999999998753
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 411 ~~l~~~i~~v~Q~ 423 (592)
T PRK10790 411 SVLRQGVAMVQQD 423 (592)
T ss_pred HHHHhheEEEccC
Confidence 24679999874
No 226
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.69 E-value=1.6e-16 Score=114.64 Aligned_cols=63 Identities=33% Similarity=0.540 Sum_probs=55.5
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
++++++.+. ...+|+++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++.
T Consensus 2 ~~~l~~~~~------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~---~G~v~~~g~~~~ 64 (180)
T cd03214 2 VENLSVGYG------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLA 64 (180)
T ss_pred eeEEEEEEC------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECC
Confidence 567777653 246999999999999999999999999999999999999884 999999998864
No 227
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.69 E-value=1.3e-16 Score=122.69 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=64.6
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+.+ ....+|+++||.|++|++++|+|+||||||||+++|+|++++ +|+|.++|.++..
T Consensus 3 i~~~nls~~~~~----~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~----~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 3 MTVKDLTAKYTE----GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT----EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred EEEEEEEEEeCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEhhhCCHHH
Confidence 678888887742 124599999999999999999999999999999999999863 8999999988643
Q ss_pred CCCceEEEEe
Q 033293 107 NRRDIVSINL 116 (122)
Q Consensus 107 ~~~~i~~v~~ 116 (122)
.++.++|+|+
T Consensus 75 lr~~i~~v~q 84 (275)
T cd03289 75 WRKAFGVIPQ 84 (275)
T ss_pred HhhhEEEECC
Confidence 2356899876
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.4e-16 Score=121.70 Aligned_cols=65 Identities=28% Similarity=0.357 Sum_probs=56.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---------CCceEEEEee
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---------RRDIVSINLI 117 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---------~~~i~~v~~~ 117 (122)
..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++... .+.++|+|+-
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 56899999999999999999999999999999999999884 99999999876421 2468898863
No 229
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=5.8e-17 Score=133.37 Aligned_cols=79 Identities=24% Similarity=0.347 Sum_probs=68.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++|+|+++.+.+ ++++|+++||+|++|+.+||+|+|||||||++|+|.++... +|+|+++|+++..
T Consensus 350 ~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~----sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDY----SGSILIDGQDIKEVSL 420 (591)
T ss_pred CcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhcc----CCcEEECCeeHhhhCh
Confidence 34889999988753 45699999999999999999999999999999999999884 9999999999743
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
-++.++||||=
T Consensus 421 ~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 421 ESLRQSIGVVPQD 433 (591)
T ss_pred HHhhhheeEeCCc
Confidence 35679999984
No 230
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.69 E-value=1.3e-16 Score=131.99 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=67.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.+ ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 322 ~i~~~~v~f~y~~-----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQD-----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCC-----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEECCCCCHH
Confidence 5888888887742 246999999999999999999999999999999999999984 9999999998753
Q ss_pred -CCCceEEEEe
Q 033293 107 -NRRDIVSINL 116 (122)
Q Consensus 107 -~~~~i~~v~~ 116 (122)
.++.++||||
T Consensus 394 ~~~~~i~~v~q 404 (547)
T PRK10522 394 DYRKLFSAVFT 404 (547)
T ss_pred HHhhheEEEec
Confidence 2456899987
No 231
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.69 E-value=1.3e-16 Score=127.11 Aligned_cols=65 Identities=28% Similarity=0.299 Sum_probs=58.2
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---------CCceEEEEe
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---------RRDIVSINL 116 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---------~~~i~~v~~ 116 (122)
.+.+++++||+|++||+++|+|||||||||||++|+|+++|. +|+|.++|+++... ++.++|++|
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 356999999999999999999999999999999999999984 99999999987531 457999986
No 232
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.68 E-value=8e-17 Score=136.73 Aligned_cols=80 Identities=24% Similarity=0.254 Sum_probs=68.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ++.+|+++||++++|+.+||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 472 ~~I~~~~vsf~y~~-----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 472 GDIVINDVSYSYGY-----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDR 543 (708)
T ss_pred CcEEEEEEEEEcCC-----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCH
Confidence 35888899887742 356999999999999999999999999999999999999994 9999999998643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 544 ~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 544 HTLRQFINYLPQE 556 (708)
T ss_pred HHHHHheEEEecC
Confidence 24679999874
No 233
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=122.04 Aligned_cols=80 Identities=25% Similarity=0.334 Sum_probs=65.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~-- 106 (122)
.+.++|+++.+. ...+|+++||+|.+|++++|+|+||||||||+++|+|++++. ...+|+|.++|.++..
T Consensus 45 ~l~i~nl~~~~~------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 45 KLSVEDLDVYYG------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred eEEEEEEEEEeC------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 578888888764 246999999999999999999999999999999999998520 0148999999987632
Q ss_pred -----CCCceEEEEe
Q 033293 107 -----NRRDIVSINL 116 (122)
Q Consensus 107 -----~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 119 ~~~~~~~~~i~~v~q 133 (305)
T PRK14264 119 VNLVELRKRVGMVFQ 133 (305)
T ss_pred ccHHHHhhceEEEcc
Confidence 1346889876
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.8e-16 Score=119.28 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=65.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+. ...+|+++||++++|++++|+|+||||||||+++|+|+++|. +..+|+|.++|+++..
T Consensus 6 ~~l~~~nl~~~~~------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~ 79 (261)
T PRK14258 6 PAIKVNNLSFYYD------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER 79 (261)
T ss_pred ceEEEeeEEEEeC------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc
Confidence 3578888888763 236999999999999999999999999999999999998862 1247999999987521
Q ss_pred ------CCCceEEEEe
Q 033293 107 ------NRRDIVSINL 116 (122)
Q Consensus 107 ------~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 80 ~~~~~~~~~~i~~~~q 95 (261)
T PRK14258 80 RVNLNRLRRQVSMVHP 95 (261)
T ss_pred ccchHHhhccEEEEec
Confidence 1345888875
No 235
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3e-16 Score=123.46 Aligned_cols=84 Identities=20% Similarity=0.198 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCC-
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGT- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~- 106 (122)
..++++|+++.+.+ ....+|+++||+|++|+++||+|+||||||||+++|+|+..+. ...+|+|.++|+++..
T Consensus 79 ~~i~~~nls~~y~~----~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 79 NVFEIRNFNFWYMN----RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred ceEEEEeeEEEecC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 46888999887742 1246999999999999999999999999999999999998531 1248999999998741
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 155 ~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 155 KISSLELRTRIGMVFQK 171 (329)
T ss_pred ccchHhhhccEEEEecC
Confidence 24579999874
No 236
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.68 E-value=5.8e-17 Score=111.13 Aligned_cols=62 Identities=42% Similarity=0.545 Sum_probs=55.2
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----CCCceEEEEee
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-----NRRDIVSINLI 117 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-----~~~~i~~v~~~ 117 (122)
|++++|.+++|++++|+|+||||||||+++|+|+.++ .+|.|.+++.++.. .++.++|+++-
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESS
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccc---cccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999988 49999999998765 24568888764
No 237
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=129.95 Aligned_cols=74 Identities=27% Similarity=0.389 Sum_probs=61.6
Q ss_pred eeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC------C
Q 033293 35 EEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN------R 108 (122)
Q Consensus 35 ~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~------~ 108 (122)
+|+++.+. ++.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++... +
T Consensus 2 ~nl~~~~~------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 2 SNISKSFP------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CceEEEeC------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHh
Confidence 35565542 246999999999999999999999999999999999999884 99999999986432 3
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|+|+-
T Consensus 73 ~~i~~v~q~ 81 (491)
T PRK10982 73 NGISMVHQE 81 (491)
T ss_pred CCEEEEecc
Confidence 468999863
No 238
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.68 E-value=1.7e-16 Score=132.05 Aligned_cols=78 Identities=27% Similarity=0.371 Sum_probs=65.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+. .++.+|+++||++++|+++||+||||||||||+++|+|++ |. +|+|.++|.++..
T Consensus 349 ~i~~~~vsf~~~-----~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSP-----DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEecc-----CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHH
Confidence 478888876442 1356999999999999999999999999999999999999 73 9999999998753
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 420 ~lr~~i~~v~Q~ 431 (588)
T PRK11174 420 SWRKHLSWVGQN 431 (588)
T ss_pred HHHhheEEecCC
Confidence 24579999873
No 239
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.68 E-value=1.5e-16 Score=130.93 Aligned_cols=80 Identities=26% Similarity=0.375 Sum_probs=68.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+.+ ..+.+++++|+++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 320 ~i~~~~v~f~y~~----~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 320 SLEFSGLSVAYPG----RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADAD 392 (529)
T ss_pred eEEEEEEEEECCC----CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEehhhCCHH
Confidence 5888898888742 1246999999999999999999999999999999999999995 99999999986532
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 393 ~lr~~i~~v~Q~ 404 (529)
T TIGR02857 393 SWRDQIAWVPQH 404 (529)
T ss_pred HHHhheEEEcCC
Confidence 4569999874
No 240
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.68 E-value=1.1e-16 Score=136.26 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=69.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ..+..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 477 ~~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~ 550 (711)
T TIGR00958 477 GLIEFQDVSFSYPN---RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDH 550 (711)
T ss_pred CeEEEEEEEEECCC---CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 35889999988752 11246999999999999999999999999999999999999995 9999999998643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 551 ~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 551 HYLHRQVALVGQE 563 (711)
T ss_pred HHHHhhceEEecC
Confidence 24579999873
No 241
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.68 E-value=1.6e-16 Score=134.58 Aligned_cols=81 Identities=27% Similarity=0.338 Sum_probs=69.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ ....+|+++||++++|+.+||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 462 ~~I~~~~vsf~Y~~----~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 462 GEIEFRNVSFAYPG----QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDP 534 (694)
T ss_pred ceEEEEEEEEEeCC----CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 35889999998742 1346999999999999999999999999999999999999995 9999999998653
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||=
T Consensus 535 ~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 535 ADLRRNIGYVPQD 547 (694)
T ss_pred HHHHhccEEECCC
Confidence 24679999873
No 242
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=1.5e-16 Score=130.05 Aligned_cols=77 Identities=22% Similarity=0.145 Sum_probs=63.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
+++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 3 ~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~ 73 (490)
T PRK10938 3 SLQISQGTFRLS------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFE 73 (490)
T ss_pred eEEEEeEEEEcC------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHH
Confidence 478888888763 245999999999999999999999999999999999999884 99999988764321
Q ss_pred --CCceEEEEe
Q 033293 108 --RRDIVSINL 116 (122)
Q Consensus 108 --~~~i~~v~~ 116 (122)
++.++|+++
T Consensus 74 ~~~~~i~~~~q 84 (490)
T PRK10938 74 QLQKLVSDEWQ 84 (490)
T ss_pred HHHHHhceecc
Confidence 234777765
No 243
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.7e-16 Score=129.79 Aligned_cols=70 Identities=21% Similarity=0.370 Sum_probs=60.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCce
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDI 111 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i 111 (122)
++++|+++.+. ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. ..+
T Consensus 2 l~i~~ls~~~~------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------~~i 66 (530)
T PRK15064 2 LSTANITMQFG------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS---AGNVSLDPN------ERL 66 (530)
T ss_pred EEEEEEEEEeC------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------CEE
Confidence 67888888763 356999999999999999999999999999999999999884 899999863 357
Q ss_pred EEEEe
Q 033293 112 VSINL 116 (122)
Q Consensus 112 ~~v~~ 116 (122)
+|+++
T Consensus 67 ~~~~q 71 (530)
T PRK15064 67 GKLRQ 71 (530)
T ss_pred EEEec
Confidence 88776
No 244
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=4.2e-16 Score=131.16 Aligned_cols=85 Identities=24% Similarity=0.198 Sum_probs=68.1
Q ss_pred eeeEEeeEEEEEeeeec-----cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 30 AHLVWEEVKVEAKNLRN-----GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~-----~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..++++|+++.+..-.. .....+|+++||+|++|++++|+|+||||||||+++|+|+++|. +|+|.++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ---GGEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CcEEEECCEEC
Confidence 46888999887741000 01246999999999999999999999999999999999999884 99999999876
Q ss_pred CC--------CCCceEEEEee
Q 033293 105 GT--------NRRDIVSINLI 117 (122)
Q Consensus 105 ~~--------~~~~i~~v~~~ 117 (122)
.. .++.++||+|-
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~ 409 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQD 409 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecC
Confidence 42 13469999874
No 245
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.7e-16 Score=125.93 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=56.6
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---------CCceEEEEee
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---------RRDIVSINLI 117 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---------~~~i~~v~~~ 117 (122)
.+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++... ++.++|+++-
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 4899999999999999999999999999999999999984 99999999986431 2469999863
No 246
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.67 E-value=2.1e-16 Score=131.72 Aligned_cols=80 Identities=24% Similarity=0.363 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ..+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 337 ~~i~~~~v~f~y~~----~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~ 409 (574)
T PRK11160 337 VSLTLNNVSFTYPD----QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSE 409 (574)
T ss_pred CeEEEEEEEEECCC----CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCH
Confidence 45889999888742 1246999999999999999999999999999999999999984 9999999998653
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.++||||
T Consensus 410 ~~~r~~i~~v~Q 421 (574)
T PRK11160 410 AALRQAISVVSQ 421 (574)
T ss_pred HHHHhheeEEcc
Confidence 2456899986
No 247
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=3e-16 Score=130.40 Aligned_cols=74 Identities=20% Similarity=0.233 Sum_probs=63.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
++++++|+++.+.+ ++.+|+++||+|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. .
T Consensus 5 ~~l~i~~l~~~y~~-----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~---~G~i~~~~~------~ 70 (556)
T PRK11819 5 YIYTMNRVSKVVPP-----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---EGEARPAPG------I 70 (556)
T ss_pred EEEEEeeEEEEeCC-----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC------C
Confidence 46889999987741 257999999999999999999999999999999999999884 999998642 3
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 71 ~i~~v~Q~ 78 (556)
T PRK11819 71 KVGYLPQE 78 (556)
T ss_pred EEEEEecC
Confidence 58888774
No 248
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.67 E-value=2.9e-16 Score=130.78 Aligned_cols=79 Identities=25% Similarity=0.434 Sum_probs=68.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+.+ ...+|+++++++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 334 ~I~~~~vsf~y~~-----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~ 405 (588)
T PRK13657 334 AVEFDDVSFSYDN-----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRA 405 (588)
T ss_pred eEEEEEEEEEeCC-----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHH
Confidence 5888888887742 245999999999999999999999999999999999999994 99999999987542
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++||||=
T Consensus 406 ~~r~~i~~v~Q~ 417 (588)
T PRK13657 406 SLRRNIAVVFQD 417 (588)
T ss_pred HHHhheEEEecC
Confidence 4679999874
No 249
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.67 E-value=4.9e-16 Score=119.95 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=61.4
Q ss_pred cceeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 26 PAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 26 ~~~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+.....++++++++. ...+|+++||.+.+|++++|+|+||||||||+++|+|+++|. +|+|.++|.
T Consensus 34 ~~~~~~l~i~nls~~--------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~---~G~I~i~g~--- 99 (282)
T cd03291 34 SSDDNNLFFSNLCLV--------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS---EGKIKHSGR--- 99 (282)
T ss_pred CCCCCeEEEEEEEEe--------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCE---
Confidence 344566888888873 245999999999999999999999999999999999999884 999999872
Q ss_pred CCCCceEEEEee
Q 033293 106 TNRRDIVSINLI 117 (122)
Q Consensus 106 ~~~~~i~~v~~~ 117 (122)
++|+|+-
T Consensus 100 -----i~yv~q~ 106 (282)
T cd03291 100 -----ISFSSQF 106 (282)
T ss_pred -----EEEEeCc
Confidence 6776653
No 250
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.67 E-value=1.4e-16 Score=118.67 Aligned_cols=66 Identities=27% Similarity=0.313 Sum_probs=54.7
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-CccccEEEECCEECCCC---CCceEEEEee
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN-VILTGSVQLNRKKGGTN---RRDIVSINLI 117 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~-~~~~G~i~~~g~~~~~~---~~~i~~v~~~ 117 (122)
+++++||++++|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++... ++.++|+++-
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecC
Confidence 478999999999999999999999999999999999871 01389999999886431 2468888764
No 251
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=117.34 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.+.+.+++++|... ...+++++|+.|.+|++++++|||||||||||++++|+..|. .|+|.++|+++..+..+
T Consensus 3 ~l~~~~~sl~y~g~----~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gPgae 75 (259)
T COG4525 3 MLNVSHLSLSYEGK----PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAE 75 (259)
T ss_pred eeehhheEEecCCc----chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCCCcc
Confidence 45667788877631 245999999999999999999999999999999999999995 99999999998776666
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
.+.|.|
T Consensus 76 rgvVFQ 81 (259)
T COG4525 76 RGVVFQ 81 (259)
T ss_pred ceeEec
Confidence 665543
No 252
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.67 E-value=4.6e-16 Score=128.36 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=67.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC--CccccEEEECCEECCCC-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN--VILTGSVQLNRKKGGTN- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~--~~~~G~i~~~g~~~~~~- 107 (122)
.++++++++.+.+ .+....+|+++||++.+|++++|+||||||||||+++|+|+++|. ...+|+|.++|+++...
T Consensus 5 ~l~~~~l~~~~~~--~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQ--QQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecC--CCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 5788999887742 011246999999999999999999999999999999999999751 11489999999886321
Q ss_pred --------CCceEEEEee
Q 033293 108 --------RRDIVSINLI 117 (122)
Q Consensus 108 --------~~~i~~v~~~ 117 (122)
++.++|++|-
T Consensus 83 ~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred HHHHHHHhcCceEEEecC
Confidence 2468999874
No 253
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.66 E-value=2.1e-16 Score=118.06 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=52.7
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.......+|+++
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~v~q 61 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRMVVFQ 61 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhheEEec
Confidence 47899999999999999999999999999999999884 99999999987543334577765
No 254
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.66 E-value=2.7e-16 Score=117.13 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=54.9
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+.++++++.+. .+.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|++..
T Consensus 23 l~~~~~~~~~~------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~ 87 (224)
T cd03220 23 LGILGRKGEVG------EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRGRVSS 87 (224)
T ss_pred hhhhhhhhhcC------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEch
Confidence 44555555432 356999999999999999999999999999999999999884 999999998753
No 255
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.5e-16 Score=118.23 Aligned_cols=79 Identities=24% Similarity=0.265 Sum_probs=62.0
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEE------ECCE
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQ------LNRK 102 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~------~~g~ 102 (122)
.+.++++++++.+. .+.+++++||.+.+|++++|+|+||||||||+++|+|+.+|. +|+|. ++|.
T Consensus 8 ~~~i~~~~~~~~~~------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~---~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 8 EDVFNISRLYLYIN------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY---DSKIKVDGKVLYFGK 78 (257)
T ss_pred hhheeeeeEEEecC------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---cCceeEcCEEEECCc
Confidence 45688899988764 356999999999999999999999999999999999998874 55544 4444
Q ss_pred ECCC-----CCCceEEEEe
Q 033293 103 KGGT-----NRRDIVSINL 116 (122)
Q Consensus 103 ~~~~-----~~~~i~~v~~ 116 (122)
++.. .+..++|+++
T Consensus 79 ~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred ccccCCHHHHhcceEEEcc
Confidence 4321 1356888875
No 256
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.66 E-value=2.4e-16 Score=130.83 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=68.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ++.+++++||.+++|+.+||+||||||||||++.|+++++|. +|+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y~~-----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~ 398 (567)
T COG1132 327 GSIEFENVSFSYPG-----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISL 398 (567)
T ss_pred CeEEEEEEEEEcCC-----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCH
Confidence 34888888887752 457999999999999999999999999999999999999984 9999999998754
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.+++|||
T Consensus 399 ~~lr~~I~~V~Q 410 (567)
T COG1132 399 DSLRKRIGIVSQ 410 (567)
T ss_pred HHHHHhccEEcc
Confidence 2567899986
No 257
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.1e-15 Score=107.71 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=61.4
Q ss_pred EeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-----C
Q 033293 34 WEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-----R 108 (122)
Q Consensus 34 ~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-----~ 108 (122)
++++++.+. +..++++++|.+++|++++|+|+||||||||+++|+|++++. +|+|.++|.+.... .
T Consensus 2 ~~~~~~~~~------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~ 72 (157)
T cd00267 2 IENLSFRYG------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELR 72 (157)
T ss_pred eEEEEEEeC------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHH
Confidence 456666553 236999999999999999999999999999999999999874 99999999876431 3
Q ss_pred CceEEEEee
Q 033293 109 RDIVSINLI 117 (122)
Q Consensus 109 ~~i~~v~~~ 117 (122)
+.++|++++
T Consensus 73 ~~i~~~~ql 81 (157)
T cd00267 73 RRIGYVPQL 81 (157)
T ss_pred hceEEEeeC
Confidence 458888763
No 258
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.65 E-value=3.7e-16 Score=129.21 Aligned_cols=81 Identities=32% Similarity=0.406 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ..+.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 315 ~~i~~~~v~~~y~~----~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 315 GHLSVENVTIVPPG----GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDR 387 (544)
T ss_pred CeEEEEEEEEEcCC----CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCH
Confidence 35888888887742 1246999999999999999999999999999999999999984 9999999998643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 388 ~~~~~~i~~v~q~ 400 (544)
T TIGR01842 388 ETFGKHIGYLPQD 400 (544)
T ss_pred HHHhhheEEecCC
Confidence 24568999873
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.4e-16 Score=128.58 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=62.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++. + ..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 265 ~l~~~~l~~~-------~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~---~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 265 VFEVRNVTSR-------D-RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA---GGEIRLNGKDISPRSPL 333 (510)
T ss_pred EEEEeCcccc-------C-CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCEECCCCCHH
Confidence 4666676653 1 23899999999999999999999999999999999999884 99999999876421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 334 ~~~~~~i~~v~q~ 346 (510)
T PRK09700 334 DAVKKGMAYITES 346 (510)
T ss_pred HHHHCCcEEccCc
Confidence 2468999873
No 260
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.65 E-value=5.7e-16 Score=128.54 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=62.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.+.+ .+.+|+++||+|.+|++++|+|||||||||||++|+|+++|. +|+|.+++ ..
T Consensus 3 ~~i~~~nls~~~~~-----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~---~G~i~~~~------~~ 68 (552)
T TIGR03719 3 YIYTMNRVSKVVPP-----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF---NGEARPAP------GI 68 (552)
T ss_pred EEEEEeeEEEecCC-----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecC------CC
Confidence 35788888887631 246999999999999999999999999999999999999884 99999874 24
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 69 ~i~~v~Q~ 76 (552)
T TIGR03719 69 KVGYLPQE 76 (552)
T ss_pred EEEEEecc
Confidence 68888763
No 261
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.2e-15 Score=128.38 Aligned_cols=69 Identities=29% Similarity=0.269 Sum_probs=58.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..++++++++.|..- .....+|+++||++.+|+++||+||||||||||+++|+|+++|. +|+|.++|..
T Consensus 11 ~~l~v~~l~~~y~~~--~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~ 79 (623)
T PRK10261 11 DVLAVENLNIAFMQE--QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKML 79 (623)
T ss_pred ceEEEeceEEEecCC--CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEE
Confidence 368899999987421 11246999999999999999999999999999999999999884 8999998864
No 262
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.65 E-value=4.3e-16 Score=127.34 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=63.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+. +..+|+++||.+++|++++|+||||||||||+++|+|+.++. .+|+|.++|++...
T Consensus 259 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYN------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEEC------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecccCCCCCC
Confidence 4578888887763 246999999999999999999999999999999999987541 38999999976421
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
.++.++|+++
T Consensus 331 ~~~~~~~i~~v~q 343 (490)
T PRK10938 331 IWDIKKHIGYVSS 343 (490)
T ss_pred HHHHHhhceEECH
Confidence 1345888875
No 263
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.65 E-value=9.1e-16 Score=119.72 Aligned_cols=84 Identities=26% Similarity=0.315 Sum_probs=68.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC-C-CCccccEEEECCEECCC---
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS-K-NVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~-~-~~~~~G~i~~~g~~~~~--- 106 (122)
++++||++.+... ....+++++|||++.+||++||+|+|||||||+.++|+|+++ + ....+|+|.|+|+++..
T Consensus 2 L~v~nL~v~f~~~--~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTD--AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecC--CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 6789999988642 123579999999999999999999999999999999999997 4 33467899999996421
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
+.+++++|+|=
T Consensus 80 ~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 80 KELRKIRGKEIAMIFQD 96 (316)
T ss_pred HHHHhhcCceEEEEEcC
Confidence 34579999873
No 264
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=5.5e-16 Score=127.91 Aligned_cols=84 Identities=20% Similarity=0.207 Sum_probs=66.3
Q ss_pred eeeEEeeEEEEEeeeec-----cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 30 AHLVWEEVKVEAKNLRN-----GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~-----~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..++++|+++.+..-.. ...+.+|+++||++++|++++|+||||||||||+++|+|+++ . +|+|.++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 35889999887741000 012469999999999999999999999999999999999985 3 89999999876
Q ss_pred CCC--------CCceEEEEee
Q 033293 105 GTN--------RRDIVSINLI 117 (122)
Q Consensus 105 ~~~--------~~~i~~v~~~ 117 (122)
... ++.++|+|+-
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~ 370 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQD 370 (529)
T ss_pred cccchhhHHHhhhceEEEEeC
Confidence 321 3468999874
No 265
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6e-16 Score=127.72 Aligned_cols=71 Identities=27% Similarity=0.387 Sum_probs=61.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+. ++.+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++++ +.
T Consensus 319 ~l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~~ 383 (530)
T PRK15064 319 ALEVENLTKGFD------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD---SGTVKWSEN------AN 383 (530)
T ss_pred eEEEEeeEEeeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------eE
Confidence 578888887663 246999999999999999999999999999999999999884 999999873 35
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 384 i~~~~q 389 (530)
T PRK15064 384 IGYYAQ 389 (530)
T ss_pred EEEEcc
Confidence 888876
No 266
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.8e-16 Score=130.73 Aligned_cols=62 Identities=26% Similarity=0.489 Sum_probs=55.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
|.++|+++.+. ++.+|+++||.|.+|+++||+|||||||||||++|+|+++|. +|+|.+++.
T Consensus 2 i~i~nls~~~g------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd---~G~I~~~~~ 63 (638)
T PRK10636 2 IVFSSLQIRRG------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD---GGSYTFPGN 63 (638)
T ss_pred EEEEEEEEEeC------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEecCC
Confidence 67888888763 356999999999999999999999999999999999998884 999999874
No 267
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.65 E-value=3.7e-16 Score=129.28 Aligned_cols=80 Identities=20% Similarity=0.380 Sum_probs=67.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ .+..+|++++|++++|++++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 329 ~~i~~~~v~f~y~~----~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 329 GDVEFRNVTFRYPG----RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTL 401 (571)
T ss_pred CeEEEEEEEEEcCC----CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCH
Confidence 35888898888742 1246999999999999999999999999999999999999985 9999999998643
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
.++.++|+||
T Consensus 402 ~~~~~~i~~v~Q 413 (571)
T TIGR02203 402 ASLRRQVALVSQ 413 (571)
T ss_pred HHHHhhceEEcc
Confidence 2346899987
No 268
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=8.3e-16 Score=121.74 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=52.8
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---------CCCceEEEEee
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---------NRRDIVSINLI 117 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---------~~~~i~~v~~~ 117 (122)
++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .++.++|+++-
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 899999999999999999999999999999999884 9999999987532 24578998763
No 269
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3.9e-16 Score=131.64 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=70.8
Q ss_pred eeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-
Q 033293 28 VLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~- 106 (122)
....++|+|+++.|.. +.+..+|+|+||+|+||+++|||||||+||||+..+|..++.|. +|+|.+||.++..
T Consensus 462 ~~G~IeF~~VsFaYP~---Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPT---RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDI 535 (716)
T ss_pred ccceEEEEEeeeecCC---CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhc
Confidence 4457999999998874 23457999999999999999999999999999999999999995 9999999999754
Q ss_pred ----CCCceEEEE
Q 033293 107 ----NRRDIVSIN 115 (122)
Q Consensus 107 ----~~~~i~~v~ 115 (122)
.++.+++|-
T Consensus 536 ~~~~lr~~Ig~V~ 548 (716)
T KOG0058|consen 536 NHKYLRRKIGLVG 548 (716)
T ss_pred CHHHHHHHeeeee
Confidence 256788883
No 270
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.64 E-value=5.1e-16 Score=128.65 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=68.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ ..++.+|+++||++++||.++|+|+||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 336 ~~i~~~~v~f~y~~---~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~ 409 (576)
T TIGR02204 336 GEIEFEQVNFAYPA---RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDP 409 (576)
T ss_pred ceEEEEEEEEECCC---CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCH
Confidence 35888898887742 11246999999999999999999999999999999999999984 99999999986432
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+||=
T Consensus 410 ~~~~~~i~~~~Q~ 422 (576)
T TIGR02204 410 AELRARMALVPQD 422 (576)
T ss_pred HHHHHhceEEccC
Confidence 3468999873
No 271
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-15 Score=116.88 Aligned_cols=70 Identities=26% Similarity=0.355 Sum_probs=58.6
Q ss_pred eeeEEeeEEEEEeeee--------------ccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc
Q 033293 30 AHLVWEEVKVEAKNLR--------------NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG 95 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~--------------~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G 95 (122)
+.++++|+..++.... +.....+++++||++.+|++++|+||||||||||+++|+|+++|. +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~---~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ce
Confidence 4577888887776532 112346899999999999999999999999999999999999884 99
Q ss_pred EEEECCE
Q 033293 96 SVQLNRK 102 (122)
Q Consensus 96 ~i~~~g~ 102 (122)
+|.++|.
T Consensus 80 ~I~~~g~ 86 (264)
T PRK13546 80 KVDRNGE 86 (264)
T ss_pred EEEECCE
Confidence 9999985
No 272
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.64 E-value=6.7e-16 Score=122.29 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=52.4
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---------CCCceEEEEe
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---------NRRDIVSINL 116 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---------~~~~i~~v~~ 116 (122)
++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .++.++|+++
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEec
Confidence 899999999999999999999999999999999884 9999999987632 2356899876
No 273
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=2.2e-17 Score=122.34 Aligned_cols=65 Identities=23% Similarity=0.437 Sum_probs=58.4
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC------CCCceEEEEe
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT------NRRDIVSINL 116 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~------~~~~i~~v~~ 116 (122)
.+++++++||.+.+||+++|+|||||||||.+.++.|+.+|+ +|+|.+++.++.. .+.-++|+||
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQ 86 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQ 86 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccc
Confidence 367999999999999999999999999999999999999995 9999999998754 2345899987
No 274
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5e-16 Score=116.78 Aligned_cols=70 Identities=29% Similarity=0.453 Sum_probs=60.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..|+++||.+++.+ .+.+|+++|+.|++||+.+||||||||||||.++|+|.-.-. .++|+|.|+|+++.
T Consensus 2 ~~L~I~dLhv~v~~-----~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~ 71 (251)
T COG0396 2 MMLEIKDLHVEVEG-----KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDIL 71 (251)
T ss_pred ceeEEeeeEEEecC-----chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccc
Confidence 46889999998853 148999999999999999999999999999999999975432 25899999999874
No 275
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.64 E-value=6.3e-16 Score=131.09 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ..+.+|+++||.+++|+.++|+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 454 ~~i~~~~vsf~y~~----~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 454 GAITFENIRFRYAP----DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADP 526 (694)
T ss_pred CeEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCH
Confidence 35888999887742 1245999999999999999999999999999999999999984 9999999998753
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 527 ~~~r~~i~~v~q~ 539 (694)
T TIGR01846 527 AWLRRQMGVVLQE 539 (694)
T ss_pred HHHHHhCeEEccC
Confidence 24568999873
No 276
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.64 E-value=7.9e-16 Score=128.02 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=67.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++++++.+.+ ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 313 ~I~~~~v~~~y~~----~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~ 385 (569)
T PRK10789 313 ELDVNIRQFTYPQ----TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLD 385 (569)
T ss_pred cEEEEEEEEECCC----CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHH
Confidence 4778888877642 1246999999999999999999999999999999999999984 9999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+||-
T Consensus 386 ~~~~~i~~v~q~ 397 (569)
T PRK10789 386 SWRSRLAVVSQT 397 (569)
T ss_pred HHHhheEEEccC
Confidence 23568998763
No 277
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=8.7e-16 Score=113.13 Aligned_cols=59 Identities=29% Similarity=0.320 Sum_probs=51.4
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---------CCCceEEEEee
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---------NRRDIVSINLI 117 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---------~~~~i~~v~~~ 117 (122)
++||++.+ ++++|+||||||||||+++|+|+++|. +|+|.++|.++.. .++.++|+++-
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 99999999 999999999999999999999999884 9999999987531 13468898764
No 278
>PLN03211 ABC transporter G-25; Provisional
Probab=99.63 E-value=1.5e-15 Score=128.78 Aligned_cols=68 Identities=43% Similarity=0.680 Sum_probs=58.0
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-CCCceEEEEee
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-NRRDIVSINLI 117 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-~~~~i~~v~~~ 117 (122)
++.+|+++|+.+++||++||+|||||||||||++|+|++++. ..+|+|.++|+++.. ..+.++||++-
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECchhhccceEEECcc
Confidence 356999999999999999999999999999999999998763 148999999998643 24568999863
No 279
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.6e-16 Score=117.86 Aligned_cols=76 Identities=24% Similarity=0.339 Sum_probs=61.0
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
+++.+++..|.. ..++++||||.++.|++++|+|||||||||+||+|++++.|. +|.|.++|.+....
T Consensus 2 l~v~~l~K~y~~-----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 2 LEVTDLTKSYGS-----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred eeeeehhhhccC-----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHH
Confidence 455666665542 245899999999999999999999999999999999999995 99999999875432
Q ss_pred CCceEEEE
Q 033293 108 RRDIVSIN 115 (122)
Q Consensus 108 ~~~i~~v~ 115 (122)
++.++.++
T Consensus 74 rr~IGVl~ 81 (245)
T COG4555 74 RRKIGVLF 81 (245)
T ss_pred hhhcceec
Confidence 44555543
No 280
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.63 E-value=1.2e-15 Score=128.51 Aligned_cols=89 Identities=35% Similarity=0.573 Sum_probs=73.4
Q ss_pred eeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC--
Q 033293 28 VLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG-- 105 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~-- 105 (122)
....+.|+++.+...+... ..+++|++|++.+++||++||+|||||||||||++|+|+...+...+|+|.+||++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~ 100 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSR 100 (613)
T ss_pred ccceeEEEEEEEEecCCCC-ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchh
Confidence 3467889999988765322 2468999999999999999999999999999999999999875568999999996543
Q ss_pred CCCCceEEEEee
Q 033293 106 TNRRDIVSINLI 117 (122)
Q Consensus 106 ~~~~~i~~v~~~ 117 (122)
..++..+||+|-
T Consensus 101 ~~~~~s~yV~Qd 112 (613)
T KOG0061|consen 101 SFRKISGYVQQD 112 (613)
T ss_pred hhhheeEEEccc
Confidence 345678999873
No 281
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.63 E-value=7.7e-16 Score=128.60 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.+.+ ...+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 334 ~i~~~~v~~~y~~-----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~ 405 (585)
T TIGR01192 334 AVEFRHITFEFAN-----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRE 405 (585)
T ss_pred eEEEEEEEEECCC-----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHH
Confidence 5888888887642 245899999999999999999999999999999999999984 9999999998643
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+||-
T Consensus 406 ~~~~~i~~v~q~ 417 (585)
T TIGR01192 406 SLRKSIATVFQD 417 (585)
T ss_pred HHHhheEEEccC
Confidence 24568999874
No 282
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=7.8e-16 Score=126.43 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=64.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++++++.+.. ..+..+++++||++++|++++|+||||||||||+++|+|+++|. .+|+|.++|+++...
T Consensus 259 ~l~~~~l~~~~~~---~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 259 ILEVRNLTAWDPV---NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred eEEEecCcccccc---ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCEECCCCCHH
Confidence 4777777765421 01246999999999999999999999999999999999998731 399999999876421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 334 ~~~~~~i~~v~q~ 346 (506)
T PRK13549 334 QAIAQGIAMVPED 346 (506)
T ss_pred HHHHCCCEEeCcc
Confidence 2458998874
No 283
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.63 E-value=9e-16 Score=125.71 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=64.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+.. ..+..+++++||++.+|++++|+|||||||||||++|+|+++|. .+|+|.++|+++...
T Consensus 257 ~l~~~~l~~~~~~---~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 257 ILEARNLTCWDVI---NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGKPVDIRNPA 331 (500)
T ss_pred eEEEeCCcccccc---cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCEECCCCCHH
Confidence 4677777765410 01246999999999999999999999999999999999999741 389999999886421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 332 ~~~~~~i~~v~q~ 344 (500)
T TIGR02633 332 QAIRAGIAMVPED 344 (500)
T ss_pred HHHhCCCEEcCcc
Confidence 3458888764
No 284
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.63 E-value=1.6e-15 Score=110.15 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=49.0
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
..+++++ |.+++|++++|+||||||||||+++|+|+++|. +|+|.++|.. ++|+++
T Consensus 13 ~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~-------i~~~~q 68 (177)
T cd03222 13 FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDEWDGIT-------PVYKPQ 68 (177)
T ss_pred EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CcEEEECCEE-------EEEEcc
Confidence 4577774 899999999999999999999999999999984 9999999863 566665
No 285
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.63 E-value=1.6e-15 Score=136.91 Aligned_cols=85 Identities=31% Similarity=0.531 Sum_probs=68.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-CCC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-NRR 109 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-~~~ 109 (122)
.++|+|+++.+.. ....+.+|+++|+.+++|+++||+|||||||||||++|+|+.+++...+|+|.++|+++.. .++
T Consensus 759 ~l~~~nl~~~~~~--~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKI--KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecC--CCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 4788998887642 1123579999999999999999999999999999999999987432357999999998743 346
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++||+|-
T Consensus 837 ~i~yv~Q~ 844 (1394)
T TIGR00956 837 SIGYVQQQ 844 (1394)
T ss_pred ceeeeccc
Confidence 68999874
No 286
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=2e-15 Score=125.45 Aligned_cols=73 Identities=23% Similarity=0.444 Sum_probs=61.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+. ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|. +|+|.+++. .
T Consensus 323 ~~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~---~G~i~~~~~------~ 387 (556)
T PRK11819 323 KVIEAENLSKSFG------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD---SGTIKIGET------V 387 (556)
T ss_pred eEEEEEeEEEEEC------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCc------e
Confidence 4588888887763 246999999999999999999999999999999999999884 999998532 2
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 388 ~i~~v~q~ 395 (556)
T PRK11819 388 KLAYVDQS 395 (556)
T ss_pred EEEEEeCc
Confidence 58888863
No 287
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=124.58 Aligned_cols=85 Identities=32% Similarity=0.347 Sum_probs=71.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-CccccEEEECCEECCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN-VILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~-~~~~G~i~~~g~~~~~--- 106 (122)
.|+++||+++|... +....++++|||.+.+||++||+|+|||||||+.++|+|++++. ...+|+|.|+|+++..
T Consensus 5 lL~V~nL~v~~~~~--~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATD--GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecC--CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 78999999998753 22246999999999999999999999999999999999999875 3458999999986421
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
..++++||+|-
T Consensus 83 ~~~r~~rg~~Ia~i~Q~ 99 (539)
T COG1123 83 REMRKLRGKRIAMIFQD 99 (539)
T ss_pred HHHHHhccccEEEEecC
Confidence 34679999873
No 288
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.62 E-value=2.1e-15 Score=125.17 Aligned_cols=73 Identities=23% Similarity=0.433 Sum_probs=61.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+. ++.+|+++||.|.+|++++|+||||||||||+++|+|+++|. +|+|.+++. .
T Consensus 321 ~~l~~~~l~~~~~------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~~~------~ 385 (552)
T TIGR03719 321 KVIEAENLSKGFG------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD---SGTIKIGET------V 385 (552)
T ss_pred eEEEEeeEEEEEC------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEECCc------e
Confidence 3578888887763 246999999999999999999999999999999999999884 999998542 2
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 386 ~i~~v~q~ 393 (552)
T TIGR03719 386 KLAYVDQS 393 (552)
T ss_pred EEEEEeCC
Confidence 58888763
No 289
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.62 E-value=1.1e-15 Score=125.71 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=64.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC-CEE---CC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN-RKK---GG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~-g~~---~~ 105 (122)
..++++|+++.+.+.. .....+|+++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++ |.+ +.
T Consensus 278 ~~l~~~~l~~~~~~~~-~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~~g~~~~~~~ 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVD-RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT---SGEVNVRVGDEWVDMT 353 (520)
T ss_pred ceEEEeccEEEeccCC-CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEEecCCcccccc
Confidence 3588899988774210 11246999999999999999999999999999999999999884 9999995 532 11
Q ss_pred C--------CCCceEEEEe
Q 033293 106 T--------NRRDIVSINL 116 (122)
Q Consensus 106 ~--------~~~~i~~v~~ 116 (122)
. .++.++|+|+
T Consensus 354 ~~~~~~~~~~~~~i~~v~q 372 (520)
T TIGR03269 354 KPGPDGRGRAKRYIGILHQ 372 (520)
T ss_pred ccchhhHHHHhhhEEEEcc
Confidence 1 1345899987
No 290
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.62 E-value=1.4e-15 Score=114.84 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=53.6
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-----CCceEEEEee
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-----RRDIVSINLI 117 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-----~~~i~~v~~~ 117 (122)
+|+++||++++|++++|+||||||||||+++|+|++++ +|+|.++|+++... ++.++|+|+-
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 78999999999999999999999999999999999853 89999999986431 2357888763
No 291
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.62 E-value=2e-15 Score=127.34 Aligned_cols=72 Identities=25% Similarity=0.482 Sum_probs=60.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.+. ++.+|+++||.|.+|++++|+|||||||||||++|+|+++|. +|+|.+ |.+ .
T Consensus 318 ~~l~~~~l~~~~~------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~-~~~-----~ 382 (635)
T PRK11147 318 IVFEMENVNYQID------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD---SGRIHC-GTK-----L 382 (635)
T ss_pred ceEEEeeeEEEEC------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEE-CCC-----c
Confidence 3577888887663 246999999999999999999999999999999999999884 999998 432 2
Q ss_pred ceEEEEe
Q 033293 110 DIVSINL 116 (122)
Q Consensus 110 ~i~~v~~ 116 (122)
.++|+++
T Consensus 383 ~i~y~~q 389 (635)
T PRK11147 383 EVAYFDQ 389 (635)
T ss_pred EEEEEeC
Confidence 5888876
No 292
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.62 E-value=2.6e-15 Score=124.66 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=67.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+. ......+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 336 ~~i~~~~v~f~y~~~-~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~---~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 336 DSIELKDVHMNPKAP-EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ---EGEILLDGAAVSADSR 411 (555)
T ss_pred ceEEEEEEEEEeCCC-CCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 358889999887531 001135999999999999999999999999999999999999985 99999999987542
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++||+|
T Consensus 412 ~~~~~~i~~v~q 423 (555)
T TIGR01194 412 DDYRDLFSAIFA 423 (555)
T ss_pred HHHHhhCcEEcc
Confidence 345788875
No 293
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.7e-15 Score=125.36 Aligned_cols=80 Identities=25% Similarity=0.351 Sum_probs=67.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.+..+++++.+.+ +++++++++|++++|+.+||+|+||||||||+++|+|+++| .+|+|.+||.+...
T Consensus 320 ei~~~~l~~~y~~-----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~vng~~l~~l~~~ 391 (559)
T COG4988 320 EISLENLSFRYPD-----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPE 391 (559)
T ss_pred eeeecceEEecCC-----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEEECCccccccCHH
Confidence 3444577776643 34899999999999999999999999999999999999998 49999999988643
Q ss_pred -CCCceEEEEeee
Q 033293 107 -NRRDIVSINLIK 118 (122)
Q Consensus 107 -~~~~i~~v~~~~ 118 (122)
.++.++||||-.
T Consensus 392 ~~~k~i~~v~Q~p 404 (559)
T COG4988 392 AWRKQISWVSQNP 404 (559)
T ss_pred HHHhHeeeeCCCC
Confidence 357799998744
No 294
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.5e-15 Score=124.75 Aligned_cols=67 Identities=24% Similarity=0.429 Sum_probs=60.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+.+++++++..|. ..++|+++||.+.+||++||+|.||||||||+|+|+|.++|. +|+|.++|++..
T Consensus 7 ~ll~~~~i~K~Fg------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~ 73 (500)
T COG1129 7 PLLELRGISKSFG------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVA 73 (500)
T ss_pred ceeeeecceEEcC------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEcc
Confidence 4677888888764 367999999999999999999999999999999999999984 999999999864
No 295
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-16 Score=128.35 Aligned_cols=106 Identities=25% Similarity=0.296 Sum_probs=79.5
Q ss_pred CcccchhhcccccCCCCCCCCCc-----ceeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHH
Q 033293 4 NHTTESIRHRHAYSGDRENDNTP-----AVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKST 78 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKST 78 (122)
..+.+|.+|..+....+.+..-+ .....++++|++++|.+ ...++|+++||++.+||.+||+|+|||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~----~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVSFTYPG----QQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCccccCCccceeeeccceeecCC----CccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 34556777776665554332211 11126899999998864 2346999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCccccEEEECCEECCCC-----CCceEEEEe
Q 033293 79 LLDALAGRLSKNVILTGSVQLNRKKGGTN-----RRDIVSINL 116 (122)
Q Consensus 79 Ll~~L~gl~~~~~~~~G~i~~~g~~~~~~-----~~~i~~v~~ 116 (122)
|++.|+|.+.|+ +|+|.++|.++..- +..+++++|
T Consensus 380 llqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Q 419 (573)
T COG4987 380 LLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ 419 (573)
T ss_pred HHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhcc
Confidence 999999999995 99999999886432 235666665
No 296
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=2.1e-15 Score=114.07 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=48.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+|+||||++.+||.+||+|+|||||||||++|+|.++|. +|+|.++|+-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt---~G~v~v~G~v 90 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT---SGKVKVTGKV 90 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC---CceEEEcceE
Confidence 46999999999999999999999999999999999999995 9999999875
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.61 E-value=1.9e-15 Score=124.36 Aligned_cols=60 Identities=20% Similarity=0.380 Sum_probs=52.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEEC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLN 100 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~ 100 (122)
++++|+++.+. ++.+|+++||.+.+|++++|+||||||||||+++|+|++ +| .+|+|.++
T Consensus 1 l~~~~l~~~~~------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i~~~ 62 (520)
T TIGR03269 1 IEVKNLTKKFD------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRIIYH 62 (520)
T ss_pred CEEEEEEEEEC------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEEEEe
Confidence 35778887663 246999999999999999999999999999999999997 56 48999987
No 298
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=1.9e-15 Score=137.10 Aligned_cols=80 Identities=21% Similarity=0.399 Sum_probs=69.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.|.. ....+|+|+||+|++||.+||+|+||||||||+++|.|+++|. +|+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~----~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~---~G~I~IdG~di~~i~~~ 1306 (1495)
T PLN03232 1234 SIKFEDVHLRYRP----GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE---KGRIMIDDCDVAKFGLT 1306 (1495)
T ss_pred cEEEEEEEEEECC----CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CceEEECCEEhhhCCHH
Confidence 5889999998842 1246999999999999999999999999999999999999984 9999999999753
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.+++|||=
T Consensus 1307 ~lR~~i~iVpQd 1318 (1495)
T PLN03232 1307 DLRRVLSIIPQS 1318 (1495)
T ss_pred HHHhhcEEECCC
Confidence 25679999873
No 299
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.2e-15 Score=126.21 Aligned_cols=72 Identities=24% Similarity=0.372 Sum_probs=60.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++++++.+. ++.+|+++||.|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. ..
T Consensus 312 ~l~~~~l~~~y~------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------~~ 376 (638)
T PRK10636 312 LLKMEKVSAGYG------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV---SGEIGLAKG------IK 376 (638)
T ss_pred eEEEEeeEEEeC------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCC------EE
Confidence 577888877663 356999999999999999999999999999999999999884 999998632 25
Q ss_pred eEEEEee
Q 033293 111 IVSINLI 117 (122)
Q Consensus 111 i~~v~~~ 117 (122)
++|+++-
T Consensus 377 igy~~Q~ 383 (638)
T PRK10636 377 LGYFAQH 383 (638)
T ss_pred EEEecCc
Confidence 7888773
No 300
>PLN03130 ABC transporter C family member; Provisional
Probab=99.61 E-value=2.5e-15 Score=137.08 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=69.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ ....+|+++||+|++||.+||+|+||||||||+++|+|+++|. +|+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y~~----~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~---~G~I~IDG~dI~~i~l 1308 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP----ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE---RGRILIDGCDISKFGL 1308 (1622)
T ss_pred CcEEEEEEEEEeCC----CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCEecccCCH
Confidence 35899999998852 1246999999999999999999999999999999999999984 9999999999754
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.+++|||-
T Consensus 1309 ~~LR~~IsiVpQd 1321 (1622)
T PLN03130 1309 MDLRKVLGIIPQA 1321 (1622)
T ss_pred HHHHhccEEECCC
Confidence 25679999873
No 301
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.61 E-value=1.6e-15 Score=124.15 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=62.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++. ...+|+++||.+++|++++|+||||||||||+++|+|+.+|. +|+|.++|+++...
T Consensus 250 ~i~~~~l~~~--------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 250 ILEVRNLTSL--------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS---AGTITLHGKKINNHNAN 318 (491)
T ss_pred EEEEeCcccc--------cCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC---ccEEEECCEECCCCCHH
Confidence 4666666653 135899999999999999999999999999999999999884 99999999886432
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 319 ~~~~~~i~~~~q~ 331 (491)
T PRK10982 319 EAINHGFALVTEE 331 (491)
T ss_pred HHHHCCCEEcCCc
Confidence 2347888763
No 302
>PTZ00243 ABC transporter; Provisional
Probab=99.60 E-value=2.8e-15 Score=136.41 Aligned_cols=81 Identities=27% Similarity=0.394 Sum_probs=69.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ ....+|+++||+|++||.+||+|+||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 1307 G~I~f~nVsf~Y~~----~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~---~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE----GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC---GGEIRVNGREIGAYGL 1379 (1560)
T ss_pred CeEEEEEEEEEeCC----CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEcccCCH
Confidence 35889999998753 1235999999999999999999999999999999999999984 9999999999753
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 1380 ~~LR~~I~iVpQd 1392 (1560)
T PTZ00243 1380 RELRRQFSMIPQD 1392 (1560)
T ss_pred HHHHhcceEECCC
Confidence 35679999874
No 303
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=9.1e-16 Score=112.52 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=52.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNR 108 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~ 108 (122)
...+|.++||.+.+||++-|.||||||||||||+|+|+.+|. +|+|.+++.++...+
T Consensus 14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~---~G~v~~~~~~i~~~~ 70 (209)
T COG4133 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVR 70 (209)
T ss_pred cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC---CCeEEecCCCCccch
Confidence 467999999999999999999999999999999999999995 999999988775543
No 304
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.60 E-value=3.3e-15 Score=119.82 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=55.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE----CCC---------CCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK----GGT---------NRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~----~~~---------~~~~i~~v~~ 116 (122)
..+++++||++++|++++|+|+||||||||+++|+|+++|. +|+|.++|++ +.. .++.++|+++
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ 113 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ 113 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence 46899999999999999999999999999999999999984 9999999963 211 1246999986
Q ss_pred e
Q 033293 117 I 117 (122)
Q Consensus 117 ~ 117 (122)
-
T Consensus 114 ~ 114 (382)
T TIGR03415 114 K 114 (382)
T ss_pred C
Confidence 3
No 305
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=3.5e-15 Score=125.79 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=56.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
.++++++++.+. ...+|+++||.|.+|++++|+|||||||||||++|+|+++|. +|+|.+++.
T Consensus 3 ~l~i~~ls~~~~------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~---~G~I~~~~~ 65 (635)
T PRK11147 3 LISIHGAWLSFS------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQD 65 (635)
T ss_pred EEEEeeEEEEeC------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CeEEEeCCC
Confidence 578888888774 356999999999999999999999999999999999999884 899999763
No 306
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.2e-15 Score=113.07 Aligned_cols=66 Identities=26% Similarity=0.421 Sum_probs=56.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
++++|++..+. .+.+++++|+.|++|.+++|+|||||||||||.+++.+++.. +|+|.++|.++..
T Consensus 2 I~i~nv~K~y~------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~ 67 (252)
T COG4604 2 ITIENVSKSYG------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTS 67 (252)
T ss_pred eeehhhhHhhC------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeeccc
Confidence 34555555442 367999999999999999999999999999999999999884 9999999998754
No 307
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=121.38 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=59.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..+++++++..|. +..+.++|||++++||+.||+|+||||||||+++|.|+++|+ +|+|.++|+++.
T Consensus 3 ~~l~~~~itK~f~------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~ 69 (501)
T COG3845 3 PALEMRGITKRFP------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVR 69 (501)
T ss_pred ceEEEeccEEEcC------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEec
Confidence 3567778877764 357899999999999999999999999999999999999995 999999999864
No 308
>PLN03073 ABC transporter F family; Provisional
Probab=99.59 E-value=6e-15 Score=126.15 Aligned_cols=74 Identities=23% Similarity=0.340 Sum_probs=61.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+.+ ...+|+++||.|.+|++++|+|||||||||||++|+|+++|. +|+|.+++. .
T Consensus 507 ~~L~~~~ls~~y~~-----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~---~G~I~~~~~------~ 572 (718)
T PLN03073 507 PIISFSDASFGYPG-----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS---SGTVFRSAK------V 572 (718)
T ss_pred ceEEEEeeEEEeCC-----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CceEEECCc------e
Confidence 45788888877631 245999999999999999999999999999999999999884 899998652 3
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+++-
T Consensus 573 ~igyv~Q~ 580 (718)
T PLN03073 573 RMAVFSQH 580 (718)
T ss_pred eEEEEecc
Confidence 58888763
No 309
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.59 E-value=1e-14 Score=123.30 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=68.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
+.++++|+++.+.+- .....+|+++||++++||+++|+||||||||||+++|+|+++|. +|++.++|+++...
T Consensus 3 ~~l~~~nl~~~y~~~--~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 3 ALLELKDIRRSYPSG--EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT---SGTYRVAGQDVATLDA 77 (648)
T ss_pred cEEEEeeEEEEeCCC--CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEcCcCCH
Confidence 358899999887421 11246999999999999999999999999999999999999884 99999999986431
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 78 ~~~~~~~~~~i~~v~q~ 94 (648)
T PRK10535 78 DALAQLRREHFGFIFQR 94 (648)
T ss_pred HHHHHHHhccEEEEeCC
Confidence 3468888763
No 310
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.59 E-value=6.5e-15 Score=105.63 Aligned_cols=79 Identities=29% Similarity=0.394 Sum_probs=65.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC---CC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG---TN 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~---~~ 107 (122)
.+.++|+++... +..+|-+++|+|.+||++.||||||||||||+..+.|.+.+....+|++.++++.+. ..
T Consensus 2 ~l~l~nvsl~l~------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVSLRLP------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeeeecCC------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 356677776542 467899999999999999999999999999999999999987778999999999864 34
Q ss_pred CCceEEEE
Q 033293 108 RRDIVSIN 115 (122)
Q Consensus 108 ~~~i~~v~ 115 (122)
+|.++.+.
T Consensus 76 qRq~GiLF 83 (213)
T COG4136 76 QRQIGILF 83 (213)
T ss_pred hhheeeee
Confidence 56666653
No 311
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.59 E-value=5.7e-15 Score=122.18 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=61.9
Q ss_pred eeeeeEEeeEEEEEeeee-----ccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 28 VLAHLVWEEVKVEAKNLR-----NGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~-----~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
..+.++++|++..|..-. ......++++|||.+.+||++||+|+||||||||.++|+|+++|. +|.|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCc
Confidence 446788999998886311 112346899999999999999999999999999999999999994 999999997
Q ss_pred E
Q 033293 103 K 103 (122)
Q Consensus 103 ~ 103 (122)
+
T Consensus 354 ~ 354 (539)
T COG1123 354 D 354 (539)
T ss_pred c
Confidence 6
No 312
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=5.6e-15 Score=113.16 Aligned_cols=73 Identities=23% Similarity=0.262 Sum_probs=61.2
Q ss_pred eeeEEeeEEEEEeeee-cccc--ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLR-NGAK--KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~-~~~~--~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..++++|+...+..-. .... ..++++|||.+++||+++|+|+||||||||-|+|+|+++|. +|+|.|+|+++.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchh
Confidence 4688899888775311 1112 37999999999999999999999999999999999999994 999999998753
No 313
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.59 E-value=5.5e-15 Score=111.96 Aligned_cols=78 Identities=31% Similarity=0.459 Sum_probs=65.9
Q ss_pred eeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-
Q 033293 28 VLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT- 106 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~- 106 (122)
..+.++++|+++.+. ++.+|+++|++|++||..+|+|||||||||||++++|..+|. +|.+.+.|+....
T Consensus 28 ~~~li~l~~v~v~r~------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps---sg~~~~~G~~~G~~ 98 (257)
T COG1119 28 NEPLIELKNVSVRRN------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKG 98 (257)
T ss_pred CcceEEecceEEEEC------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC---CCceeeeeeeccCC
Confidence 346799999998764 578999999999999999999999999999999999999984 8999999887532
Q ss_pred -----CCCceEEE
Q 033293 107 -----NRRDIVSI 114 (122)
Q Consensus 107 -----~~~~i~~v 114 (122)
.++.|++|
T Consensus 99 ~~~~elrk~IG~v 111 (257)
T COG1119 99 ETIFELRKRIGLV 111 (257)
T ss_pred cchHHHHHHhCcc
Confidence 24456665
No 314
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.58 E-value=4.5e-15 Score=134.87 Aligned_cols=81 Identities=15% Similarity=0.153 Sum_probs=69.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ ....+|+++||+|++||.+||+|+||||||||+++|.++++|. +|+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y~~----~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~---~G~I~IdG~dI~~i~~ 1355 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE----DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA---EGEIIIDGLNIAKIGL 1355 (1522)
T ss_pred CcEEEEEEEEEeCC----CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC---CCeEEECCEEccccCH
Confidence 45899999998853 1236999999999999999999999999999999999999984 9999999999754
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
-++.+++|||=
T Consensus 1356 ~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1356 HDLRFKITIIPQD 1368 (1522)
T ss_pred HHHHhcCeEECCC
Confidence 25679999873
No 315
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.58 E-value=1.7e-15 Score=124.34 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=69.0
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
...++++|+++.+. .++.+|+||||.+.+|+.+||+||||+||||++|+|..+...+ +|.|.++|+++..
T Consensus 535 ~G~i~fsnvtF~Y~-----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYD-----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVT 606 (790)
T ss_pred CCeEEEEEeEEecC-----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHH
Confidence 34688889888764 3678999999999999999999999999999999999998774 9999999998742
Q ss_pred ---CCCceEEEEe
Q 033293 107 ---NRRDIVSINL 116 (122)
Q Consensus 107 ---~~~~i~~v~~ 116 (122)
-++.|+.|||
T Consensus 607 ~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQ 619 (790)
T ss_pred HHHHHHhcCcccC
Confidence 3567888886
No 316
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.9e-15 Score=122.97 Aligned_cols=64 Identities=23% Similarity=0.310 Sum_probs=56.1
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC------CCceEEEEee
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN------RRDIVSINLI 117 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~------~~~i~~v~~~ 117 (122)
.+++++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++... ++.++|+|+-
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 336 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT---AGQVYLDGKPIDIRSPRDAIRAGIMLCPED 336 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC---CceEEECCEECCCCCHHHHHhCCCEEcCcC
Confidence 4899999999999999999999999999999999999884 99999999876421 2468888874
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.58 E-value=3.4e-15 Score=122.54 Aligned_cols=64 Identities=25% Similarity=0.355 Sum_probs=56.1
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC------CCceEEEEee
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN------RRDIVSINLI 117 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~------~~~i~~v~~~ 117 (122)
.+++++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|+++... ++.++|+|+-
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT---SGYVTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence 3799999999999999999999999999999999999884 99999999886431 2468999874
No 318
>PLN03140 ABC transporter G family member; Provisional
Probab=99.58 E-value=7.7e-15 Score=132.96 Aligned_cols=88 Identities=24% Similarity=0.319 Sum_probs=69.5
Q ss_pred eeeeEEeeEEEEEeeee------cc-ccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 29 LAHLVWEEVKVEAKNLR------NG-AKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~------~~-~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
...+.|+|+++.+.... .. ..+.+|+++|+.+++|++++|+|||||||||||++|+|+..++ ..+|+|.++|
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 34689999999875311 11 2346999999999999999999999999999999999997642 2589999999
Q ss_pred EECCC--CCCceEEEEee
Q 033293 102 KKGGT--NRRDIVSINLI 117 (122)
Q Consensus 102 ~~~~~--~~~~i~~v~~~ 117 (122)
.+... .++.++|++|-
T Consensus 944 ~~~~~~~~~~~igyv~Q~ 961 (1470)
T PLN03140 944 FPKKQETFARISGYCEQN 961 (1470)
T ss_pred ccCChHHhhhheEEEccc
Confidence 87542 23568999874
No 319
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.58 E-value=3.4e-15 Score=135.26 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=69.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-------------------
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN------------------- 90 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~------------------- 90 (122)
..++++|+++.|.+ +.+..+|+++||+|++|+.+||+||||||||||+++|+|++.|.
T Consensus 1164 g~I~f~nVsF~Y~~---~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1164 GKIEIMDVNFRYIS---RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred ceEEEEEEEEECCC---CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 35889999998753 11346999999999999999999999999999999999999871
Q ss_pred --------------------------------CccccEEEECCEECCC-----CCCceEEEEe
Q 033293 91 --------------------------------VILTGSVQLNRKKGGT-----NRRDIVSINL 116 (122)
Q Consensus 91 --------------------------------~~~~G~i~~~g~~~~~-----~~~~i~~v~~ 116 (122)
...+|+|+++|.++.. .++.++||||
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1303 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ 1303 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC
Confidence 0138999999998743 2567999987
No 320
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.58 E-value=1e-14 Score=135.04 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=67.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.+++++++..+.+ ..+.+++++||.|++||++||+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 1937 ~L~v~nLsK~Y~~----~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt---sG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1937 ILRLNELTKVYSG----TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT---SGDATVAGKSILTNISD 2009 (2272)
T ss_pred eEEEEEEEEEECC----CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECcchHHH
Confidence 5788888877631 1246999999999999999999999999999999999999985 9999999998742
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+||-
T Consensus 2010 ~r~~IGy~pQ~ 2020 (2272)
T TIGR01257 2010 VHQNMGYCPQF 2020 (2272)
T ss_pred HhhhEEEEecc
Confidence 24569999984
No 321
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=4.1e-15 Score=108.12 Aligned_cols=55 Identities=33% Similarity=0.536 Sum_probs=51.3
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
+..+|+++||.+.+||+++|.||||||||||+++++.+.+|. +|+++|.|+++..
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~ 69 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVST 69 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccc
Confidence 467999999999999999999999999999999999999994 9999999998754
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.57 E-value=1.9e-14 Score=133.19 Aligned_cols=81 Identities=21% Similarity=0.248 Sum_probs=67.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..+++++++..+.+ .++.+++++||.+.+|++++|+||||||||||+++|+|+++|. +|+|.++|.++..
T Consensus 927 ~~L~I~nLsK~y~~----~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~ 999 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP----SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLD 999 (2272)
T ss_pred ceEEEEeEEEEecC----CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHH
Confidence 46778888877631 1357999999999999999999999999999999999999984 9999999998743
Q ss_pred -CCCceEEEEee
Q 033293 107 -NRRDIVSINLI 117 (122)
Q Consensus 107 -~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 1000 ~~r~~IG~~pQ~ 1011 (2272)
T TIGR01257 1000 AVRQSLGMCPQH 1011 (2272)
T ss_pred HHhhcEEEEecC
Confidence 24568999874
No 323
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.57 E-value=1.1e-14 Score=132.22 Aligned_cols=80 Identities=24% Similarity=0.319 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.. ....+|+++||.|++|+.+||+|+||||||||+++|+|+++. +|+|.++|.++..
T Consensus 1216 g~I~f~nVs~~Y~~----~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~----~G~I~IdG~di~~i~~ 1287 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE----AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST----EGEIQIDGVSWNSVTL 1287 (1490)
T ss_pred CeEEEEEEEEEeCC----CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCC----CcEEEECCEEcccCCH
Confidence 35889999998853 135799999999999999999999999999999999999863 8999999999753
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 1288 ~~lR~~is~IpQd 1300 (1490)
T TIGR01271 1288 QTWRKAFGVIPQK 1300 (1490)
T ss_pred HHHHhceEEEeCC
Confidence 35679999973
No 324
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.57 E-value=4.2e-15 Score=110.12 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=45.2
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEE-ECCEE
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQ-LNRKK 103 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~-~~g~~ 103 (122)
+|+++||.|++|++++|+||||||||||+++|+|+++|. +|+|. +++..
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~---sG~i~~~~~~~ 51 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD---EGDFIGLRGDA 51 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CCCEEEecCce
Confidence 789999999999999999999999999999999999884 99997 77754
No 325
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.57 E-value=7.9e-15 Score=106.92 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=66.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.+++++++..+.+ ......+|++|++.+++||-++|+|||||||||||-+|+|+..|. +|+|.+.|+++..
T Consensus 6 ii~~~~l~ktvg~--~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd 80 (228)
T COG4181 6 IIEVHHLSKTVGQ--GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDED 80 (228)
T ss_pred eeehhhhhhhhcC--CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHH
Confidence 4666777665543 112356999999999999999999999999999999999999985 9999999998632
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
+.+.+++|.|.
T Consensus 81 ~rA~~R~~~vGfVFQS 96 (228)
T COG4181 81 ARAALRARHVGFVFQS 96 (228)
T ss_pred HHHHhhccceeEEEEe
Confidence 34578888764
No 326
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.57 E-value=1.1e-14 Score=123.46 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=61.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.+ ++.+++++||++++|++++|+||||||||||+++|+|++++. +|+|.+++ ++.
T Consensus 451 ~i~~~nv~~~~~~-----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~---~G~i~~~~------~~~ 516 (659)
T TIGR00954 451 GIKFENIPLVTPN-----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY---GGRLTKPA------KGK 516 (659)
T ss_pred eEEEEeeEEECCC-----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEeecC------CCc
Confidence 4778888876531 346999999999999999999999999999999999999874 89998763 346
Q ss_pred eEEEEee
Q 033293 111 IVSINLI 117 (122)
Q Consensus 111 i~~v~~~ 117 (122)
++|+||-
T Consensus 517 i~~v~Q~ 523 (659)
T TIGR00954 517 LFYVPQR 523 (659)
T ss_pred EEEECCC
Confidence 8888763
No 327
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.57 E-value=4.9e-15 Score=121.46 Aligned_cols=89 Identities=33% Similarity=0.402 Sum_probs=73.9
Q ss_pred CCCCCcceeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC
Q 033293 21 ENDNTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN 100 (122)
Q Consensus 21 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~ 100 (122)
..+..|.....+.++++.+.-. +..+.+++++||.+.+|+.++||||||||||||.|+|.|..+| .+|.|++|
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~PP----g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p---~~G~VRLD 396 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAPP----GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLD 396 (580)
T ss_pred CCCCCCCCCceeeEeeeeecCC----CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccccc---CCCcEEec
Confidence 3345565667788999888443 2346799999999999999999999999999999999999999 49999999
Q ss_pred CEECCC-----CCCceEEEEe
Q 033293 101 RKKGGT-----NRRDIVSINL 116 (122)
Q Consensus 101 g~~~~~-----~~~~i~~v~~ 116 (122)
|-++.. -.+.++|+||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQ 417 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQ 417 (580)
T ss_pred chhhhcCCHHHhccccCcCcc
Confidence 987643 2467999998
No 328
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.56 E-value=4e-15 Score=110.64 Aligned_cols=57 Identities=28% Similarity=0.486 Sum_probs=49.6
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEee
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLI 117 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~~ 117 (122)
|++++|++++|+|+||||||||+++|+|+++|. +|+|.++|+++...++.++|+|+-
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~i~~v~q~ 57 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA---KGTVKVAGASPGKGWRHIGYVPQR 57 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccchHhhCcEEEeccc
Confidence 568999999999999999999999999999884 999999998764445678998863
No 329
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.56 E-value=5.5e-15 Score=121.70 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=55.0
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC------CCceEEEEe
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN------RRDIVSINL 116 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~------~~~i~~v~~ 116 (122)
+|+++||.+++|++++|+||||||||||+++|+|+++|. +|+|.++|+++... ++.++|+|+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 345 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR---GGRIMLNGKEINALSTAQRLARGLVYLPE 345 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence 589999999999999999999999999999999999884 99999999876432 246899986
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.56 E-value=1.5e-14 Score=120.06 Aligned_cols=68 Identities=26% Similarity=0.381 Sum_probs=57.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+.++|+++.+.+ +..+.+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.++|.+
T Consensus 20 ~mL~lknL~~~~~~---~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~---sGeI~I~G~~ 87 (549)
T PRK13545 20 PFDKLKDLFFRSKD---GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN---KGTVDIKGSA 87 (549)
T ss_pred ceeEEEEEEEecCC---CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---ceEEEECCEe
Confidence 35778888776542 11246999999999999999999999999999999999999884 9999999875
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.56 E-value=7.1e-15 Score=133.24 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC-CEECCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN-RKKGGT--- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~-g~~~~~--- 106 (122)
.++++|+++.|.. .....+|+++||.+++|+++||+||||||||||+++|+|+++|. +|+|.++ |.++..
T Consensus 382 ~I~~~nVsf~Y~~---~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 382 KIQFKNVRFHYDT---RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT---EGDIIINDSHNLKDINL 455 (1466)
T ss_pred cEEEEEEEEEcCC---CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC---CCeEEEeCCcchhhCCH
Confidence 5888898888752 11246999999999999999999999999999999999999984 9999994 566532
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 456 ~~lr~~Ig~V~Q~ 468 (1466)
T PTZ00265 456 KWWRSKIGVVSQD 468 (1466)
T ss_pred HHHHHhccEeccc
Confidence 24568999873
No 332
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.55 E-value=1.1e-14 Score=110.28 Aligned_cols=55 Identities=24% Similarity=0.465 Sum_probs=45.2
Q ss_pred eEeeceEEE-----cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 52 LINGLTGYA-----QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 52 il~~is~~i-----~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
.++++++.+ .+|++++|+||||||||||+++|+|+++|. +|+|.++|. .++|+|+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~---~G~i~~~g~-------~i~~~~q 68 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD---EGDIEIELD-------TVSYKPQ 68 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CCeEEECCc-------eEEEecc
Confidence 445555555 579999999999999999999999999884 999999875 4666665
No 333
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.55 E-value=1e-14 Score=107.04 Aligned_cols=63 Identities=32% Similarity=0.468 Sum_probs=52.1
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+.+.++.+.|... =-.+++.|++||++||+|||||||||||++++|+..|. +|+|.++|++..
T Consensus 2 l~L~~V~~~y~~~--------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHL--------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcc--------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecC
Confidence 3456666666432 22478899999999999999999999999999999995 999999999864
No 334
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.55 E-value=6.5e-15 Score=123.89 Aligned_cols=69 Identities=38% Similarity=0.501 Sum_probs=59.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCCceEEEEee
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRRDIVSINLI 117 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~~i~~v~~~ 117 (122)
.+.+|+++|+.+++||+++|+|||||||||||++|+|+.++....+|+|.++|.++.. .++.++|+||-
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~ 107 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD 107 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccc
Confidence 4579999999999999999999999999999999999987743458999999998642 24568999874
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=99.54 E-value=1.2e-14 Score=131.74 Aligned_cols=69 Identities=30% Similarity=0.519 Sum_probs=60.0
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCCceEEEEee
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRRDIVSINLI 117 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~~i~~v~~~ 117 (122)
.+.+|+++|+.+++|++++|+|||||||||||++|+|++++....+|+|.++|.+... .++.++||+|-
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~ 247 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQN 247 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccc
Confidence 3569999999999999999999999999999999999998754568999999998643 25679999874
No 336
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=1.3e-14 Score=105.35 Aligned_cols=61 Identities=23% Similarity=0.250 Sum_probs=48.7
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
...+|+++||++++|++++|+|||||||||||+++++ .+|++.+++......+..++|+++
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~v~~~~~~~~~~~~~~~~~~q 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGKARLISFLPKFSRNKLIFIDQ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCcEEECCcccccccccEEEEhH
Confidence 3579999999999999999999999999999999853 288999987632222334777654
No 337
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=7.6e-15 Score=108.23 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=59.3
Q ss_pred eeeEEeeEEEEEeeeec---cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 30 AHLVWEEVKVEAKNLRN---GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~---~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..++++|++..+..-.. .....+++.|||++++|+.+||+|.||||||||.++|+|.++|. +|+|+|||+++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L 77 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPL 77 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccc
Confidence 45778888766643111 11235899999999999999999999999999999999999994 99999999875
No 338
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=4.2e-14 Score=117.45 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=61.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..+.+.++++.+. .+.+|+++++.+.+|+.+||||+|||||||||++|+|...|. +|+|..... -
T Consensus 2 ~~i~~~~ls~~~g------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~~------~ 66 (530)
T COG0488 2 SMITLENLSLAYG------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKG------L 66 (530)
T ss_pred ceEEEeeeEEeeC------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecCC------c
Confidence 3577888888763 478999999999999999999999999999999999999884 999987532 2
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
+++|++|-
T Consensus 67 ~v~~l~Q~ 74 (530)
T COG0488 67 RVGYLSQE 74 (530)
T ss_pred eEEEeCCC
Confidence 56777664
No 339
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.52 E-value=3.2e-14 Score=125.68 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=69.0
Q ss_pred eeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC
Q 033293 28 VLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN 107 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~ 107 (122)
....++++|+.++|.. +.+..+|+++||.|++|+.+||+|||||||||++++|.+++.|. +|+|+++|.++...
T Consensus 347 ~~g~ief~nV~FsYPs---Rpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~ 420 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPS---RPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNL 420 (1228)
T ss_pred cccceEEEEEEecCCC---CCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhc
Confidence 3457999999998863 22457999999999999999999999999999999999999994 99999999987542
Q ss_pred -----CCceEEEEe
Q 033293 108 -----RRDIVSINL 116 (122)
Q Consensus 108 -----~~~i~~v~~ 116 (122)
+..++.|.|
T Consensus 421 ~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 421 NLKWLRSQIGLVSQ 434 (1228)
T ss_pred chHHHHhhcCeeee
Confidence 344555543
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.51 E-value=6.2e-14 Score=117.69 Aligned_cols=70 Identities=21% Similarity=0.301 Sum_probs=58.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+. ...|++++|.+.+|++++|+||||||||||+++|+|+++|. +|+|.++ .
T Consensus 339 ~~l~~~~ls~~~~-------~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~---~G~I~~~--------~ 400 (590)
T PRK13409 339 TLVEYPDLTKKLG-------DFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD---EGEVDPE--------L 400 (590)
T ss_pred eEEEEcceEEEEC-------CEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEe--------e
Confidence 4578888877653 23589999999999999999999999999999999999884 9999885 1
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+||-
T Consensus 401 ~i~y~~Q~ 408 (590)
T PRK13409 401 KISYKPQY 408 (590)
T ss_pred eEEEeccc
Confidence 57888763
No 341
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=3.5e-14 Score=108.17 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=45.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEE-----------ECCEEC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQ-----------LNRKKG 104 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~-----------~~g~~~ 104 (122)
.+++++++ +.+|++++|+|||||||||||++|+|+++|. +|+|. ++|+++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~---~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPN---LGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEeeccccchhhhhccCchh
Confidence 58999994 9999999999999999999999999999984 99996 777765
No 342
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=111.15 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=60.7
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN 107 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~ 107 (122)
-..++++|+.+.+.. ...-+..|+++|+.||++-|+|.||||||||++.|.|+.+|+ +|+|++||+++...
T Consensus 320 ~~~lelrnvrfay~~-----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~e 390 (546)
T COG4615 320 WKTLELRNVRFAYQD-----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSAE 390 (546)
T ss_pred ccceeeeeeeeccCc-----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCCC
Confidence 345777787777653 224678999999999999999999999999999999999996 99999999998654
No 343
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=4.7e-14 Score=104.59 Aligned_cols=66 Identities=27% Similarity=0.458 Sum_probs=59.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC-EEC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR-KKG 104 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g-~~~ 104 (122)
..+.++++++++. +..+++++||++.+||.-+|+|||||||||+|.+|.|..+|. .|+++|+| .++
T Consensus 4 ~iL~~~~vsVsF~------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~---~G~v~f~g~~dl 70 (249)
T COG4674 4 IILYLDGVSVSFG------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDTDL 70 (249)
T ss_pred ceEEEeceEEEEc------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC---cceEEEcCchhh
Confidence 4678889999885 356999999999999999999999999999999999999984 89999999 444
No 344
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=2.2e-14 Score=110.51 Aligned_cols=51 Identities=29% Similarity=0.473 Sum_probs=48.1
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.+++|+||+|++|++++++|||||||||+|++|.|++.|. +|.|.++|...
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~---~G~v~V~G~~P 88 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVNGKDP 88 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC---CCeEEecCcCc
Confidence 4889999999999999999999999999999999999994 99999999864
No 345
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.46 E-value=1.1e-13 Score=122.68 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=68.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC-C-CC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG-T-NR 108 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~-~-~~ 108 (122)
...|.|+.++.+. ++..+++|++|+..++||-++||||+|||||||||++|||+...+ ..+|+|+++|.+.. . -.
T Consensus 787 V~~w~dl~~~~~~--qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPI--QGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA 863 (1391)
T ss_pred eEEEEeCCccccc--cccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence 4667777776653 234568999999999999999999999999999999999997653 46999999999976 3 45
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
|..+||-|
T Consensus 864 R~~GYvqQ 871 (1391)
T KOG0065|consen 864 RVSGYVEQ 871 (1391)
T ss_pred cccceeec
Confidence 67899865
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=8.3e-14 Score=104.43 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=57.0
Q ss_pred EEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC
Q 033293 33 VWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 33 ~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~ 106 (122)
++.++...+... ....+++|+++++.|..|+|+.|+|.||||||||+++|+|.+.|. +|.|.++|.++..
T Consensus 3 ~~~~~~~~f~~g-~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t---~G~I~Idg~dVtk 72 (263)
T COG1101 3 SLSNATKTFFKG-TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTK 72 (263)
T ss_pred ccccceeeecCC-ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC---CceEEECceeccc
Confidence 344555444321 122467999999999999999999999999999999999999984 9999999998754
No 347
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.46 E-value=2.6e-13 Score=123.57 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=61.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.+ ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++| .
T Consensus 636 ~i~~~~~~~~~~~----~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~---~G~i~~~g--------~ 700 (1522)
T TIGR00957 636 SITVHNATFTWAR----DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKG--------S 700 (1522)
T ss_pred cEEEEEeEEEcCC----CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC---CcEEEECC--------E
Confidence 5788888887642 1246999999999999999999999999999999999999984 99999986 4
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+||
T Consensus 701 i~yv~Q 706 (1522)
T TIGR00957 701 VAYVPQ 706 (1522)
T ss_pred EEEEcC
Confidence 788876
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.44 E-value=3.1e-13 Score=112.31 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=60.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.+.+ .+.+++++||.+.+|+.+||+||||+||||||++|+|...|. +|.|.+.-. -
T Consensus 320 ~vl~~~~~~~~y~~-----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------v 385 (530)
T COG0488 320 LVLEFENVSKGYDG-----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------V 385 (530)
T ss_pred eeEEEeccccccCC-----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------e
Confidence 45667777766532 357999999999999999999999999999999999998884 899987522 3
Q ss_pred ceEEEEeee
Q 033293 110 DIVSINLIK 118 (122)
Q Consensus 110 ~i~~v~~~~ 118 (122)
.++|++|-.
T Consensus 386 ~igyf~Q~~ 394 (530)
T COG0488 386 KIGYFDQHR 394 (530)
T ss_pred EEEEEEehh
Confidence 688888743
No 349
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.44 E-value=2.1e-13 Score=123.36 Aligned_cols=68 Identities=22% Similarity=0.357 Sum_probs=56.1
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC-CccccEEEECCEECCC----CCCceEEEEee
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN-VILTGSVQLNRKKGGT----NRRDIVSINLI 117 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~-~~~~G~i~~~g~~~~~----~~~~i~~v~~~ 117 (122)
+.+|+++|+.+++|++++|+|||||||||||++|+|+..+. ...+|+|.++|.++.. .++.++|+++-
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~ 146 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET 146 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccc
Confidence 45999999999999999999999999999999999987321 1259999999987632 23458999874
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.44 E-value=3.5e-13 Score=115.41 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=55.2
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
...|+++|+++.|. +..+|+++||.|.+|+++||+|+|||||||||++|+|+........|+|.+.++.
T Consensus 175 ~~~I~i~nls~~y~------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 175 IKDIHMENFSISVG------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ceeEEEceEEEEeC------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 45688889988873 3469999999999999999999999999999999999641111247888765543
No 351
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.44 E-value=2.4e-13 Score=91.60 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=41.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+|++++|.+++|++++|+||||||||||+++++ +|++.++|.++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDN 47 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeH
Confidence 46899999999999999999999999999999986 56799999875
No 352
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=8.5e-13 Score=118.36 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=70.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
-.++++|++++|.. +...+|+++||.|++||.+||+|..|||||||+.+|-++.+|. +|+|.+||.++..
T Consensus 1137 G~I~f~~~~~RYrp----~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~---~G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP----NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA---EGEILIDGVDISKIGL 1209 (1381)
T ss_pred CeEEEEEeEEEeCC----CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc---CCeEEEcCeecccccH
Confidence 46999999998863 2356999999999999999999999999999999999999984 9999999999754
Q ss_pred --CCCceEEEEe
Q 033293 107 --NRRDIVSINL 116 (122)
Q Consensus 107 --~~~~i~~v~~ 116 (122)
-|++++.+||
T Consensus 1210 ~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQ 1221 (1381)
T ss_pred HHHHhcCeeeCC
Confidence 3677888887
No 353
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=6.8e-13 Score=117.39 Aligned_cols=85 Identities=24% Similarity=0.346 Sum_probs=70.9
Q ss_pred CcceeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 25 TPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 25 ~~~~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.+...-.++++|+.+.|+. +.+..+|+|+|+++++|+.+||||||||||||.+.+|-.++.| ..|.|.++|+++
T Consensus 981 ~~~~~G~I~~~~V~F~YPs---RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 981 LPNVKGDIEFRNVSFAYPT---RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP---DAGKVKIDGVDI 1054 (1228)
T ss_pred cccceeEEEEeeeEeeCCC---CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEEECCccc
Confidence 3445567999999999873 3356799999999999999999999999999999999999998 499999999987
Q ss_pred CCC-----CCceEEEE
Q 033293 105 GTN-----RRDIVSIN 115 (122)
Q Consensus 105 ~~~-----~~~i~~v~ 115 (122)
..- |+.++.|.
T Consensus 1055 k~lnl~~LR~~i~lVs 1070 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVS 1070 (1228)
T ss_pred ccCCHHHHHHhcceec
Confidence 542 44566654
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=1.5e-12 Score=119.21 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=61.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccc-cEEEECCEECCCCCC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILT-GSVQLNRKKGGTNRR 109 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~-G~i~~~g~~~~~~~~ 109 (122)
.++++|+++.+.+ .....+|+++||.+++|++++|+||+|||||||+++|+|.+++. + |+|.+. .
T Consensus 614 ~I~~~nvsf~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDS---KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------G 679 (1622)
T ss_pred ceEEEeeEEEccC---CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------C
Confidence 5888898887742 11246899999999999999999999999999999999999984 8 899864 3
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++||||-
T Consensus 680 ~Iayv~Q~ 687 (1622)
T PLN03130 680 TVAYVPQV 687 (1622)
T ss_pred eEEEEcCc
Confidence 58888764
No 355
>PLN03232 ABC transporter C family member; Provisional
Probab=99.36 E-value=2e-12 Score=117.63 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=59.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.+ .....+|+|+||++++|++++|+||+|||||||+++|+|+++|. +|.+.. .+..
T Consensus 614 ~I~~~~vsF~y~~---~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~G~i~~-------~~~~ 680 (1495)
T PLN03232 614 AISIKNGYFSWDS---KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA---ETSSVV-------IRGS 680 (1495)
T ss_pred cEEEEeeEEEcCC---CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc---CCCEEE-------ecCc
Confidence 5888888887742 11246999999999999999999999999999999999999984 765531 2346
Q ss_pred eEEEEee
Q 033293 111 IVSINLI 117 (122)
Q Consensus 111 i~~v~~~ 117 (122)
++||||-
T Consensus 681 Iayv~Q~ 687 (1495)
T PLN03232 681 VAYVPQV 687 (1495)
T ss_pred EEEEcCc
Confidence 8888874
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.35 E-value=1.8e-12 Score=117.93 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=51.1
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
+.+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.++| .++|+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~---~G~i~~~g--------~iayv~Q 494 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS---EGKIKHSG--------RISFSPQ 494 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECC--------EEEEEeC
Confidence 35899999999999999999999999999999999999984 99999987 3777776
No 357
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.34 E-value=7.2e-13 Score=97.54 Aligned_cols=67 Identities=25% Similarity=0.389 Sum_probs=56.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..++++|+...|. ...+|++||++...|+++.|+|.||||||||||||.-+..|. .|.|.++|+.+.
T Consensus 5 ~~l~v~dlHK~~G------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~ 71 (256)
T COG4598 5 NALEVEDLHKRYG------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIR 71 (256)
T ss_pred cceehhHHHhhcc------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEE
Confidence 3456666665543 356999999999999999999999999999999999988885 999999998764
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=99.33 E-value=8.1e-13 Score=111.00 Aligned_cols=51 Identities=27% Similarity=0.490 Sum_probs=46.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEE-----------ECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQ-----------LNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~-----------~~g~~~ 104 (122)
..+|++++ .+++|++++|+|||||||||||++|+|+++|. .|+|. ++|+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G~~l 148 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRGTEL 148 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCChHH
Confidence 35899999 89999999999999999999999999999985 89997 888764
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.33 E-value=1.2e-12 Score=95.98 Aligned_cols=63 Identities=29% Similarity=0.393 Sum_probs=52.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
+.+++.+++..|. ...-.+++||.+.|||+.+|+|+|||||||||+||++.+.|. +|+|.+.-
T Consensus 5 PLL~V~~lsk~Yg------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~ 67 (258)
T COG4107 5 PLLSVSGLSKLYG------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRM 67 (258)
T ss_pred cceeehhhhhhhC------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEc
Confidence 3566667665442 245778999999999999999999999999999999999995 99998854
No 360
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.31 E-value=1.8e-12 Score=101.77 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=48.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
-++++||+++.||+..|||-||||||||+|+|.++++|. +|+|+++|.++.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~ 93 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIA 93 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchh
Confidence 579999999999999999999999999999999999994 999999999864
No 361
>PTZ00243 ABC transporter; Provisional
Probab=99.28 E-value=9e-12 Score=113.83 Aligned_cols=57 Identities=28% Similarity=0.451 Sum_probs=51.0
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEee
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINLI 117 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~~ 117 (122)
+.+|+++||.+++|++++|+|||||||||||++|+|+++|. +|+|.+. +.++|+||-
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~---~G~i~~~--------~~i~yv~Q~ 729 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRVWAE--------RSIAYVPQQ 729 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEEC--------CeEEEEeCC
Confidence 46899999999999999999999999999999999999884 8999873 358888873
No 362
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.26 E-value=5.7e-12 Score=103.46 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=45.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc-EEEECCEECCC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG-SVQLNRKKGGT 106 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G-~i~~~g~~~~~ 106 (122)
..+|++|++.+++|++++|+|||||||||||+ +++..|. +| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 35899999999999999999999999999999 6777663 66 89999998754
No 363
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=102.33 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=61.3
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNR 108 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~ 108 (122)
...+.++|+++...+ +..++++.+|.+++|+.+-|.||||||||||+|+|+|+.+-. +|+|.+- ..
T Consensus 390 ~~~i~~~nl~l~~p~-----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g---~G~I~~P------~~ 455 (604)
T COG4178 390 DHGITLENLSLRTPD-----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG---SGRISMP------AD 455 (604)
T ss_pred cceeEEeeeeEECCC-----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC---CCceecC------CC
Confidence 366888898887653 457999999999999999999999999999999999999864 7877653 23
Q ss_pred CceEEEEeee
Q 033293 109 RDIVSINLIK 118 (122)
Q Consensus 109 ~~i~~v~~~~ 118 (122)
.++.|+||--
T Consensus 456 ~~~lflpQ~P 465 (604)
T COG4178 456 SALLFLPQRP 465 (604)
T ss_pred CceEEecCCC
Confidence 3466776643
No 364
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=97.27 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=62.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC--CCccccEEEECCEEC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK--NVILTGSVQLNRKKG 104 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~--~~~~~G~i~~~g~~~ 104 (122)
..+.++|+++.+.. .+....+++++||++.+||.+||+|+||||||-....++++++. ....+|+|.|+|.++
T Consensus 5 ~lL~v~nLsV~f~~--~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dl 79 (534)
T COG4172 5 PLLSIRNLSVAFHQ--EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDL 79 (534)
T ss_pred cceeeeccEEEEec--CCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhh
Confidence 56889999998863 12345799999999999999999999999999999999999864 234579999999985
No 365
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.3e-12 Score=102.52 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=65.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.+.|.++++.+ ...+++|+++||.+++|+.+|++||||+||||+++.|..++.++ +|.|.++|+++..
T Consensus 262 ~v~F~~V~F~y-----~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~---sG~I~id~qdir~vtq~ 333 (497)
T COG5265 262 AVAFINVSFAY-----DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQ 333 (497)
T ss_pred eEEEEEEEeec-----cccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc---CceEEEcchhHHHhHHH
Confidence 35566666554 34578999999999999999999999999999999999999986 9999999998643
Q ss_pred -CCCceEEEEe
Q 033293 107 -NRRDIVSINL 116 (122)
Q Consensus 107 -~~~~i~~v~~ 116 (122)
.++.++.|||
T Consensus 334 slR~aIg~VPQ 344 (497)
T COG5265 334 SLRRAIGIVPQ 344 (497)
T ss_pred HHHHHhCcCcc
Confidence 3566888876
No 366
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1.6e-11 Score=95.27 Aligned_cols=60 Identities=28% Similarity=0.397 Sum_probs=51.6
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC---------CCCCCceEEEEe
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG---------GTNRRDIVSINL 116 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~---------~~~~~~i~~v~~ 116 (122)
-+++|..+.-.++||-|+||||||||+++|+|+.+|. +|.|.+||+-+ ...+|+++||.|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 3678888887899999999999999999999999995 99999999753 234678999976
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=3.6e-11 Score=87.89 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=53.6
Q ss_pred eeEEeeEEEEEee-eeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 31 HLVWEEVKVEAKN-LRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 31 ~l~~~~l~~~~~~-~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
.+.++|++..+.- ...+-.-.+++++||+++.||++++-||||+||||||++|-+-+.|. +|+|++..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d---~G~I~v~H 72 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD---EGQILVRH 72 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC---CceEEEEe
Confidence 4667777654421 11111246899999999999999999999999999999999998884 99999864
No 368
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.22 E-value=6.2e-11 Score=95.81 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=62.2
Q ss_pred eeeeeEEeeEEEEEeeee---c--cccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 28 VLAHLVWEEVKVEAKNLR---N--GAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 28 ~~~~l~~~~l~~~~~~~~---~--~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
..+.++.+++.+.|.--. . .....+++++||++++|+.++|+|+||||||||-++|.+++++ +|+|.|.|+
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECCc
Confidence 456899999988875321 0 0123589999999999999999999999999999999999987 799999999
Q ss_pred ECC
Q 033293 103 KGG 105 (122)
Q Consensus 103 ~~~ 105 (122)
++.
T Consensus 349 ~i~ 351 (534)
T COG4172 349 DID 351 (534)
T ss_pred ccc
Confidence 875
No 369
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.20 E-value=2.3e-11 Score=106.32 Aligned_cols=63 Identities=19% Similarity=0.348 Sum_probs=57.3
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC------CCCceEEEEee
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT------NRRDIVSINLI 117 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~------~~~~i~~v~~~ 117 (122)
+++++++.+++||+.++.|+|||||||++++|.|..+|. +|++.++|..+.. .++.++|.||.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t---~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT---SGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC---cceEEEecCccccccchhhhhhhcccCCch
Confidence 899999999999999999999999999999999999994 9999999988754 34559999985
No 370
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.20 E-value=1.5e-11 Score=90.33 Aligned_cols=63 Identities=25% Similarity=0.259 Sum_probs=47.3
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC------CccccEEEECCEECCC--CCCceEEEEee
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN------VILTGSVQLNRKKGGT--NRRDIVSINLI 117 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~------~~~~G~i~~~g~~~~~--~~~~i~~v~~~ 117 (122)
+++++.+.+| +++|+||||||||||+++|++++.+. ....|++.+.|++... ..+.++++++-
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~ 84 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDN 84 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEc
Confidence 5689999999 99999999999999999999987542 1123567777765422 23567888763
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.18 E-value=3.3e-11 Score=88.48 Aligned_cols=50 Identities=36% Similarity=0.590 Sum_probs=45.8
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
-|-.+|..+..|+++-+||||||||||||-.|+|+++. +|+|.+.|.++.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~ 63 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLE 63 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchh
Confidence 45678999999999999999999999999999999875 999999999864
No 372
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=96.89 Aligned_cols=78 Identities=24% Similarity=0.358 Sum_probs=61.7
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNR 108 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~ 108 (122)
...++++++++...+ .+..+++++||.|+.|+-+.|.||||||||+|||+|+|+.+. .+|++..-... ..
T Consensus 431 Dn~i~~e~v~l~tPt----~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~---~~ 500 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPT----NGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDG---GP 500 (659)
T ss_pred cceEEeeeeeecCCC----CCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccC---CC
Confidence 467888888887653 245688999999999999999999999999999999999986 38888754322 11
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
+++-|+||
T Consensus 501 ~~lfflPQ 508 (659)
T KOG0060|consen 501 KDLFFLPQ 508 (659)
T ss_pred CceEEecC
Confidence 45777776
No 373
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.15 E-value=4.7e-11 Score=93.73 Aligned_cols=47 Identities=36% Similarity=0.528 Sum_probs=40.0
Q ss_pred EEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CCCceEEEEee
Q 033293 68 IMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NRRDIVSINLI 117 (122)
Q Consensus 68 IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~~~i~~v~~~ 117 (122)
|+|||||||||||++|+|+++|. +|+|.++|+++.. ..+.++|+++-
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~ 50 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQS 50 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecC
Confidence 68999999999999999999884 9999999998643 24568998763
No 374
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.11 E-value=3e-10 Score=102.32 Aligned_cols=74 Identities=24% Similarity=0.406 Sum_probs=62.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|.++.... ......|+||||.+++|+.+||+|+-|||||+||.+|+|.++. .+|++.++|.
T Consensus 517 ~~i~i~~~sfsW~~---~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~gs------- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS---ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNGS------- 583 (1381)
T ss_pred ceEEEeeeeEecCC---CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcCe-------
Confidence 45777888877543 1223499999999999999999999999999999999999987 5999999875
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
++|+||.
T Consensus 584 -iaYv~Q~ 590 (1381)
T KOG0054|consen 584 -VAYVPQQ 590 (1381)
T ss_pred -EEEeccc
Confidence 8999875
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.06 E-value=1.2e-10 Score=86.94 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=30.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
...+|+++||++++||+++|+|+||||||||+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 45699999999999999999999999999996
No 376
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.05 E-value=4.8e-10 Score=84.21 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=54.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+++.++.+.|+. ..+++.|++++++.|....++|.|||||||||++|+|-.-.. .|.|++.|+.
T Consensus 12 ~aievsgl~f~y~~-----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~---~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG---GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEeccc-----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc---CCeEEEcCcC
Confidence 45788888887753 347999999999999999999999999999999999975432 5778887764
No 377
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.03 E-value=7.2e-10 Score=92.07 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=53.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.+.++|+.+-.. ....++..++|++++|-.+.|.||||||||+|+|+|+|+.+- ..|...+ .....
T Consensus 481 gI~lenIpvItP-----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPv---y~g~L~~------P~~~~ 546 (728)
T KOG0064|consen 481 GIILENIPVITP-----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPV---YNGLLSI------PRPNN 546 (728)
T ss_pred ceEEecCceecc-----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcc---cCCeeec------CCCcc
Confidence 355555555433 245688999999999999999999999999999999999875 3554433 23334
Q ss_pred eEEEEee
Q 033293 111 IVSINLI 117 (122)
Q Consensus 111 i~~v~~~ 117 (122)
+-|+||=
T Consensus 547 mFYIPQR 553 (728)
T KOG0064|consen 547 IFYIPQR 553 (728)
T ss_pred eEeccCC
Confidence 7777763
No 378
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.01 E-value=5.5e-10 Score=81.31 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=51.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+.++++.+.|. ..++|.||++..++|+.+.++||||+|||||+|.|.-+.-| .+|+..+-+..
T Consensus 3 irv~~in~~yg------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p---~sg~l~ia~~~ 65 (242)
T COG4161 3 IQLNGINCFYG------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGNH 65 (242)
T ss_pred eEEcccccccc------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC---CCCeEEecccc
Confidence 45556555442 35799999999999999999999999999999999877777 49999887654
No 379
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.95 E-value=3.4e-10 Score=93.84 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=48.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
.+-+.|+++.+. .+..++++++|-+..++.+|+||||||||||||+++.|.+.|. .|.+.-
T Consensus 389 vi~~~nv~F~y~-----~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~---~G~vs~ 449 (614)
T KOG0927|consen 389 VIMVQNVSFGYS-----DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT---IGMVSR 449 (614)
T ss_pred eEEEeccccCCC-----CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc---cccccc
Confidence 445555555442 1235889999999999999999999999999999999999984 777654
No 380
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.94 E-value=1.2e-09 Score=81.59 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=27.9
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+..++.+++ +++++|+||||||||||+++|+++
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHH
Confidence 345777776 789999999999999999999844
No 381
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1e-09 Score=90.01 Aligned_cols=83 Identities=30% Similarity=0.348 Sum_probs=62.9
Q ss_pred hhhcccccCCCCCCC-CCcceeeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 9 SIRHRHAYSGDREND-NTPAVLAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.++..|+.....+ ...-..+.+-+++++|.|. ..++++..++|-|.-...+||+||||.||||||++|.|-+
T Consensus 563 LL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~-----gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 563 LLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYP-----GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred HHhCchheEEEEecCCCCCCCCCeeecccccccCC-----CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 466777776553222 1222345677888888664 3467999999999999999999999999999999999999
Q ss_pred CCCCccccEEEE
Q 033293 88 SKNVILTGSVQL 99 (122)
Q Consensus 88 ~~~~~~~G~i~~ 99 (122)
.|. .|+.+-
T Consensus 638 ~P~---~GE~RK 646 (807)
T KOG0066|consen 638 DPN---DGELRK 646 (807)
T ss_pred CCC---cchhhc
Confidence 985 676543
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.86 E-value=3.1e-09 Score=78.93 Aligned_cols=31 Identities=35% Similarity=0.673 Sum_probs=28.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
+..+++++++ ++++|+||||||||||+++|.
T Consensus 16 ~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 16 GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH
Confidence 4568888887 899999999999999999988
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.85 E-value=1.8e-09 Score=78.34 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=40.7
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..-+.+.+++|+.++|+||||||||||+++|++++++. .|.+.+.+..
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~---~~~i~ied~~ 62 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD---ERIITIEDTA 62 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEECCcc
Confidence 34466778999999999999999999999999999874 7888887643
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.84 E-value=6.8e-09 Score=86.22 Aligned_cols=54 Identities=33% Similarity=0.457 Sum_probs=46.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..+.+.++++.+. +..+++|+.|.+.+|+.++|+|+|||||||+|++++|...|
T Consensus 74 ~dvk~~sls~s~~------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 74 RDVKIESLSLSFH------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred ccceeeeeeeccC------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 3566667776653 46799999999999999999999999999999999998876
No 385
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.75 E-value=8.5e-09 Score=75.95 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=30.1
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+++++++.. |++++|+||||||||||+++|++..
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence 34667776654 7999999999999999999999854
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.70 E-value=4.1e-08 Score=80.63 Aligned_cols=57 Identities=25% Similarity=0.425 Sum_probs=43.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccE
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGS 96 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~ 96 (122)
..++|.++...+. ...|+--...|..||+++++||||-|||||.++|||.+.|. +|.
T Consensus 341 ~lv~y~~~~k~~g-------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd---eg~ 397 (591)
T COG1245 341 TLVEYPDLKKTYG-------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD---EGS 397 (591)
T ss_pred eeeecchheeecC-------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC---CCC
Confidence 3455555555443 34455556778889999999999999999999999999984 664
No 387
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.70 E-value=2.4e-08 Score=73.12 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.0
Q ss_pred eEeeceEEEcCCc-EEEEEcCCCCcHHHHHHHHh
Q 033293 52 LINGLTGYAQPDR-IMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 52 il~~is~~i~~g~-~~~IiG~nGsGKSTLl~~L~ 84 (122)
.+-++++.+.+|+ +++|.|||||||||||++|+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 4557999999995 79999999999999999999
No 388
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.68 E-value=2.2e-08 Score=73.94 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=27.9
Q ss_pred eeceEEEc-CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 54 NGLTGYAQ-PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 54 ~~is~~i~-~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.++|... +|++++|+||||||||||+++|++.+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence 45566543 58899999999999999999999654
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.68 E-value=2.6e-08 Score=75.19 Aligned_cols=38 Identities=34% Similarity=0.397 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
..+++|+||||||||||+++|++++.+. ..|++++.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~ 62 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNL 62 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCH
Confidence 4599999999999999999999998652 2345555443
No 390
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=2.4e-08 Score=73.93 Aligned_cols=38 Identities=34% Similarity=0.325 Sum_probs=34.7
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
...+.+++++.+..|++++|+||||+||||++++++++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999853
No 391
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.68 E-value=5.6e-08 Score=79.65 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=57.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC---EECC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR---KKGG-- 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g---~~~~-- 105 (122)
.++.++++..+. .+..+++.++ .+.+|++++|+|+||||||||+++|+++..+. .|.+.+.| +++.
T Consensus 139 ~~~r~~v~~~l~-----TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd---~gvv~liGergrev~e~ 209 (450)
T PRK06002 139 AMTRARVETGLR-----TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD---TVVIALVGERGREVREF 209 (450)
T ss_pred CeEeecceEEcC-----CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---eeeeeecccCCccHHHH
Confidence 345555555443 2356888885 89999999999999999999999999998874 78777754 3321
Q ss_pred -------CCCCceEEEEeee
Q 033293 106 -------TNRRDIVSINLIK 118 (122)
Q Consensus 106 -------~~~~~i~~v~~~~ 118 (122)
...+.+++|++..
T Consensus 210 ~~~~l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 210 LEDTLADNLKKAVAVVATSD 229 (450)
T ss_pred hHHHHHHhhCCeEEEEEcCC
Confidence 1234678887754
No 392
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=4.6e-08 Score=87.74 Aligned_cols=67 Identities=27% Similarity=0.528 Sum_probs=57.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~~i~~v~~ 116 (122)
..+++|+++.+++|+++.++||.||||||||++|+|-+.......|+|.+||.+... .++.++|.++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e 196 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSE 196 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccc
Confidence 368999999999999999999999999999999999887655557899999988643 3567888765
No 393
>PRK08149 ATP synthase SpaL; Validated
Probab=98.66 E-value=5.1e-08 Score=79.49 Aligned_cols=55 Identities=22% Similarity=0.356 Sum_probs=47.2
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
+.++++++ +.+.+|++++|+|+||+|||||+++|++...+....-|.|-++++++
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev 192 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREV 192 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccH
Confidence 35789999 99999999999999999999999999998877543448888888764
No 394
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.65 E-value=2.2e-08 Score=81.73 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=42.6
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+.++++++ +.+.+|++++|+|+||+|||||+++|+++..+....-|.|-.++.
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ 194 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGR 194 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecH
Confidence 35699999 999999999999999999999999999988765222344444443
No 395
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.64 E-value=3.2e-08 Score=72.49 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=27.9
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
-..++.+.+|++++|+|||||||||||++|++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34566677899999999999999999999994
No 396
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.64 E-value=4.2e-08 Score=75.67 Aligned_cols=39 Identities=38% Similarity=0.445 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
.-++|+||||||||||+++|+|++.+. +|++.++|+++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEee
Confidence 468999999999999999999999985 999999999874
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3e-08 Score=82.06 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=41.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.|...++++.+ + ++.+|.+-++.+..|..++|+|+||+|||||||+|+.
T Consensus 80 Di~~~~fdLa~-----G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 80 DIHIDNFDLAY-----G-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeeeeeeee-----c-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 44455555544 3 4679999999999999999999999999999999997
No 398
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.62 E-value=8e-08 Score=69.55 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
|++++|+||||||||||+++|+++..+ .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEEC
Confidence 689999999999999999999998754 355555544
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.61 E-value=3.4e-08 Score=80.55 Aligned_cols=38 Identities=32% Similarity=0.582 Sum_probs=35.6
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+++|+++.+++|++++|+|+|||||||+|++|+|..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 45899999999999999999999999999999999954
No 400
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.61 E-value=5.2e-08 Score=70.52 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+|++++|+|+||||||||+++|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999998765
No 401
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=5e-08 Score=79.81 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=44.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.++++++ +.+.+|++++|+|+||+|||||+++|+++..+. .|.|.+.|+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~---~gvI~~~Ger 195 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD---LNVIALIGER 195 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEEecC
Confidence 4689999 999999999999999999999999999998874 7888885543
No 402
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.59 E-value=7.6e-08 Score=58.89 Aligned_cols=38 Identities=45% Similarity=0.569 Sum_probs=30.2
Q ss_pred eEeeceEEEcC-CcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 52 LINGLTGYAQP-DRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 52 il~~is~~i~~-g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+++.++.+.+ |.++.|.|+|||||||||.++.=++.+
T Consensus 11 ~f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 11 SFDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred ccCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34446667765 569999999999999999999876655
No 403
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.58 E-value=7.4e-08 Score=71.03 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=27.5
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHh----cCcCC
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALA----GRLSK 89 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~----gl~~~ 89 (122)
.++.+.+| +++|+||||||||||+++|. |...+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~ 52 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPP 52 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCc
Confidence 34566677 99999999999999999995 77665
No 404
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=75.73 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=59.0
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
...++++++++... .+...++++||++.+||+++|.|-.|-|.+.|+.+|+|+.++. +|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~~-----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~~v 322 (501)
T COG3845 255 EVVLEVEDLSVKDR-----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGKDV 322 (501)
T ss_pred CeEEEEeeeEeecC-----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCEec
Confidence 46788888887543 1246899999999999999999999999999999999999774 79999999986
No 405
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.54 E-value=1.6e-07 Score=74.25 Aligned_cols=49 Identities=29% Similarity=0.356 Sum_probs=42.0
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
+.++++.+ +.+.+|++++|+|+||+|||||+++|++...+. .|.+..-|
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~~vi~~iG 104 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD---VNVIALIG 104 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEe
Confidence 35689999 999999999999999999999999999998874 55555544
No 406
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.54 E-value=4.6e-08 Score=71.93 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=26.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
++|++++|+||||||||||+++|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57899999999999999999999998764
No 407
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.54 E-value=1.8e-07 Score=70.78 Aligned_cols=72 Identities=21% Similarity=0.262 Sum_probs=55.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCc-cccEEEECCEE
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVI-LTGSVQLNRKK 103 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~-~~G~i~~~g~~ 103 (122)
+.+.+.|+++++.. ..+...+++++|+++.+||+-+++|+||||||-..++|+|..+.+-. .....+|++.+
T Consensus 2 ~LLDIrnL~IE~~T--sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~id 74 (330)
T COG4170 2 PLLDIRNLTIEFKT--SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDID 74 (330)
T ss_pred CcccccceEEEEec--CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccch
Confidence 45778899999874 12235699999999999999999999999999999999998764321 23445565544
No 408
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.50 E-value=2.3e-07 Score=75.19 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=45.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEe-----------eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLIN-----------GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~-----------~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..++|+++++.|.+ .+.+|+ |+.+.+.+|+.++|+||+|||||||++.|+..+..
T Consensus 129 ~ri~Fe~LTf~YP~-----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPN-----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCC-----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 35788888887753 235675 99999999999999999999999999999987653
No 409
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=1.7e-07 Score=76.85 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=45.6
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++++.+ +.+..|++++|+|+||+|||||+++|+++..+.....|.|-+.++++
T Consensus 163 iraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev 216 (455)
T PRK07960 163 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREV 216 (455)
T ss_pred ceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEH
Confidence 3466555 89999999999999999999999999999887544458888888875
No 410
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=1.6e-07 Score=76.97 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=42.9
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+.++++.+ |.+.+|++++|+|+||+|||||+++|++...+.+...|.|-..+.
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ 207 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGR 207 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcH
Confidence 35689999 999999999999999999999999999987765333455544443
No 411
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.49 E-value=1.9e-07 Score=76.36 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=43.5
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+.++++++ +.+.+|++++|+|+||+|||||+++|++...+. .+.+.+.|.
T Consensus 142 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d---~~vi~~iGe 191 (433)
T PRK07594 142 GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDAD---SNVLVLIGE 191 (433)
T ss_pred Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCC---EEEEEEECC
Confidence 45799999 999999999999999999999999999998874 566666554
No 412
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.48 E-value=1.2e-07 Score=72.87 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=31.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L 83 (122)
..-|+++++.|+.|.+++|.|+||||||||++.+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 4578999999999999999999999999999865
No 413
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=2.3e-07 Score=69.69 Aligned_cols=37 Identities=24% Similarity=0.205 Sum_probs=34.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..+.+++++.+.+|++++|.||||+||||+++++++.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999983
No 414
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.47 E-value=2.7e-07 Score=75.59 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=43.9
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+.++++++ +.+.+|++++|+|+||+|||||++++++...+. .|.+.+.|+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGe 199 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGE 199 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEcc
Confidence 35689999 999999999999999999999999999988774 677777664
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.47 E-value=1.4e-07 Score=68.63 Aligned_cols=28 Identities=43% Similarity=0.663 Sum_probs=26.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++|++++|+||||||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999864
No 416
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.43 E-value=1.8e-07 Score=73.05 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=36.6
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
+++.+..|+.++|+||+|||||||+++|++++++. .+.+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~---~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD---ERIITIED 179 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc---ccEEEEcC
Confidence 45678899999999999999999999999999874 66667754
No 417
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.43 E-value=3e-07 Score=74.89 Aligned_cols=50 Identities=28% Similarity=0.356 Sum_probs=42.8
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+..+++++ +.+.+|++++|+|+||+|||||+++|++...+. .|.+...|.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~ 181 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD---VNVIALIGE 181 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEcc
Confidence 35689999 999999999999999999999999999998774 666665443
No 418
>PRK01889 GTPase RsgA; Reviewed
Probab=98.42 E-value=3.2e-07 Score=73.15 Aligned_cols=60 Identities=33% Similarity=0.569 Sum_probs=45.1
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC--CCCCCceEEEE
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG--GTNRRDIVSIN 115 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~--~~~~~~i~~v~ 115 (122)
++.+...+.+|++++|+|+||+|||||+++|+|...+ ..|+|.+++... ....+.+.+++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~---~~G~i~~~~~~g~~tt~~~~l~~l~ 246 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQ---KTGAVREDDSKGRHTTTHRELHPLP 246 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhccc---ceeeEEECCCCCcchhhhccEEEec
Confidence 3445556778999999999999999999999999887 489999876432 22234455554
No 419
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.42 E-value=2.6e-07 Score=66.01 Aligned_cols=27 Identities=48% Similarity=0.832 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
|++++|+||||||||||++.|+.++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 578999999999999999999998654
No 420
>PLN02796 D-glycerate 3-kinase
Probab=98.42 E-value=7.7e-08 Score=76.55 Aligned_cols=54 Identities=20% Similarity=0.152 Sum_probs=42.4
Q ss_pred eeEeeceEEE---cCCcE-----EEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 51 KLINGLTGYA---QPDRI-----MAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 51 ~il~~is~~i---~~g~~-----~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.+++.+++.+ ++|+. +||+|++|||||||++.|.+++.+.....|.|.+++..+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYL 141 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYL 141 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCccc
Confidence 4667788776 56665 999999999999999999999875322357888888754
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.42 E-value=2.4e-07 Score=69.00 Aligned_cols=36 Identities=31% Similarity=0.282 Sum_probs=32.0
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..+.+++++...+ ++++|+||||+||||||+++++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHH
Confidence 4578899999877 89999999999999999999864
No 422
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.41 E-value=4e-07 Score=74.58 Aligned_cols=50 Identities=28% Similarity=0.349 Sum_probs=41.7
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+..+++.+ +.+.+|++++|+|+||+|||||+++|++...+. .+.+...|.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~---~~vi~~iG~ 199 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD---VNVIALIGE 199 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC---EEEEEEEee
Confidence 35688999 999999999999999999999999999998774 455444443
No 423
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.40 E-value=6e-07 Score=73.01 Aligned_cols=51 Identities=29% Similarity=0.350 Sum_probs=44.0
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+.++++++ +.+.+|++++|+|++|+|||||+++|++...+. .|.+.+.|+.
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~---~gvi~~~Ger 174 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKAD---INVIALIGER 174 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccc
Confidence 35689999 999999999999999999999999999988774 6777766654
No 424
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.40 E-value=4.2e-07 Score=74.03 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=43.0
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+++ .+|.+.+|++++|+|+||+|||||+++|++...+. .|.+.+.|..
T Consensus 128 i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~---~gvi~~iGer 177 (418)
T TIGR03498 128 VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD---VVVIALVGER 177 (418)
T ss_pred cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCC---EEEEEEEeee
Confidence 45665 69999999999999999999999999999998874 7777777764
No 425
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.40 E-value=2.4e-07 Score=69.91 Aligned_cols=26 Identities=50% Similarity=0.829 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+++|+|||||||||||.+|++++.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 49999999999999999999998765
No 426
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.39 E-value=5.2e-07 Score=67.53 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=32.6
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
..+.+++++...++++++|.||||+|||||+++++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 46889999999999999999999999999999976
No 427
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.39 E-value=3.5e-07 Score=65.22 Aligned_cols=34 Identities=41% Similarity=0.594 Sum_probs=27.2
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++++++.+.+| +++|.||||+||||++.+|.-.+
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L 43 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYAL 43 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 46677777776 99999999999999999987654
No 428
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.39 E-value=2.3e-07 Score=69.27 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=28.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccE
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGS 96 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~ 96 (122)
.+..+++|.||||||||||++.|++++++. .|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~---~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD---GEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc---cCC
Confidence 445799999999999999999999998873 565
No 429
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.38 E-value=8.6e-07 Score=73.48 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=52.3
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCC------CceEEEE
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNR------RDIVSIN 115 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~------~~i~~v~ 115 (122)
.++++||++.+||+++|.|-=|||+|-|+++|.|..++ .+|+|.++|+++.... .-++|||
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ 340 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRDAIKAGIAYVP 340 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHHHHHcCCEeCC
Confidence 68899999999999999999999999999999997766 4999999999864321 2377775
No 430
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.38 E-value=3.5e-07 Score=65.23 Aligned_cols=26 Identities=46% Similarity=0.640 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
|++++|+||||||||||++.|++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 68999999999999999999999754
No 431
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.34 E-value=9.3e-07 Score=71.87 Aligned_cols=49 Identities=35% Similarity=0.348 Sum_probs=40.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
.++++.+ +.+.+|++++|+|+||+|||||+++|++...+. .+.+...|.
T Consensus 125 i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~---~~vi~~iGe 173 (411)
T TIGR03496 125 VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEAD---VVVVGLIGE 173 (411)
T ss_pred EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEEec
Confidence 5688888 999999999999999999999999999988774 444444443
No 432
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.32 E-value=7.4e-07 Score=72.98 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=35.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~ 90 (122)
.++++.+ +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 4577777 999999999999999999999999999977653
No 433
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.31 E-value=4.9e-07 Score=75.16 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=45.2
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+++++++.+..|+.++|+||||+|||||++.|.|+++| .+|+..+....
T Consensus 197 ~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp---~~g~e~le~~~ 247 (506)
T PRK09862 197 EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPD---LSNEEALESAA 247 (506)
T ss_pred HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCC---CCCcEEEecch
Confidence 4588899999999999999999999999999999999988 48887776554
No 434
>PRK05922 type III secretion system ATPase; Validated
Probab=98.30 E-value=1.4e-06 Score=71.26 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=40.0
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
.++++.+ +.+.+|+.++|+|+||+|||||+++|++..++. .|.+..-|.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d---~gvi~liGe 193 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKST---INVIALIGE 193 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCC---ceEEEEeCC
Confidence 4577775 999999999999999999999999999987763 566544343
No 435
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.30 E-value=4.2e-07 Score=70.82 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
-.++||.|+||||||||+++|.+++... ...|.+.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~-~~~g~V~v 97 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW-PEHRKVEL 97 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc-CCCCceEE
Confidence 3599999999999999999999988620 02566655
No 436
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=1.2e-06 Score=79.52 Aligned_cols=38 Identities=26% Similarity=0.635 Sum_probs=31.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH----hcCcCCCCccccEEEECCEE
Q 033293 64 RIMAIMGPSGSGKSTLLDAL----AGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L----~gl~~~~~~~~G~i~~~g~~ 103 (122)
.+++|+|||||||||++.+| .|..+|. ..|.+++.+..
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~~al~G~~~~~--~~g~~~i~~~~ 70 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLKYICTGDFPPG--TKGNTFVHDPK 70 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CCCceEecCCC
Confidence 49999999999999999999 4888774 35777776644
No 437
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.27 E-value=1e-06 Score=64.72 Aligned_cols=35 Identities=37% Similarity=0.387 Sum_probs=28.6
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-++++++.+.+| +.+|+||||||||||+.+|.-.+
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l 45 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL 45 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence 345677777776 88999999999999999997543
No 438
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.27 E-value=1.8e-06 Score=70.56 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=43.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.++++.+ +.+.+|+.++|+|+||+|||||+++|++...+. .|.|.+.|+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~---~gvI~~iGer 193 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD---INVISLVGER 193 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC---eEEEEeCCCC
Confidence 4678775 999999999999999999999999999998774 7888776654
No 439
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.25 E-value=1e-06 Score=64.45 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=34.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++.+++|+|+||||||||.+.|++.+.+. -.|.+.+++.++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~--~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL--GVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC--CCCEEEEcCEeH
Confidence 578899999999999999999999977542 256788988764
No 440
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.25 E-value=1.6e-06 Score=79.53 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=39.3
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+.+..|.|.+| +++|+|+|||||||+|++|++++.+. .|.+.|++..
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~---~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCC---CCeEEECCcc
Confidence 44557788876 99999999999999999999999874 6888888654
No 441
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.24 E-value=1.6e-06 Score=70.97 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=37.3
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~ 90 (122)
+.++++++ +.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 34689999 999999999999999999999999999988764
No 442
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=1.3e-06 Score=71.44 Aligned_cols=50 Identities=28% Similarity=0.302 Sum_probs=41.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
..+++++ +.+..|++++|+|+||+|||||+++|++..... .+.+...|..
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~---v~vi~~iGer 194 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAP---IKVVALIGER 194 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCC---EEEEEeeCcc
Confidence 3578888 999999999999999999999999999876653 5666655554
No 443
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.23 E-value=1.4e-06 Score=71.50 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=40.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
.++++.+ +.+.+|+.++|+|+||+|||||+++|+++.+.. ..+.|.+.|
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~~~vi~liG 200 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA--DVNVIALIG 200 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC--CceEEEEEC
Confidence 4688888 999999999999999999999999999987431 235666644
No 444
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=1e-06 Score=77.81 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=29.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHH
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLD 81 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~ 81 (122)
.|+++++.|+.|++++|.|+||||||||++
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 689999999999999999999999999997
No 445
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.22 E-value=6.7e-07 Score=66.83 Aligned_cols=24 Identities=42% Similarity=0.499 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++||.|+||||||||++.|++++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999885
No 446
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.21 E-value=8.4e-07 Score=64.47 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.||||||||||.++|++++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999987
No 447
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.19 E-value=1.7e-06 Score=80.26 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=35.6
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN 100 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~ 100 (122)
..|++++|.+++|++++|+|+||||||||+..+ + .+ .|++.+.
T Consensus 949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L-~~----~G~~~~~ 991 (1809)
T PRK00635 949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--L-YA----AGNIAYA 991 (1809)
T ss_pred ccccceeEEecCCcEEEEECCCCCChhHHHHHH--H-Hh----hccEeee
Confidence 468999999999999999999999999988766 2 22 6667654
No 448
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.18 E-value=1.7e-06 Score=66.81 Aligned_cols=25 Identities=40% Similarity=0.655 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+++|+|+||||||||+++|++++.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~ 25 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGS 25 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4799999999999999999999876
No 449
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.18 E-value=1.8e-06 Score=61.71 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=28.4
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
+|+++++..+++++ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 56777888777655 9999999999999999997
No 450
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.17 E-value=2.2e-06 Score=71.42 Aligned_cols=38 Identities=39% Similarity=0.588 Sum_probs=34.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.++++|+.+.+ ++.+++|.|||||||||+.+.|+..+
T Consensus 271 ~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 271 STRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467999999977 78999999999999999999999544
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.16 E-value=1.3e-06 Score=68.84 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=34.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++++++|+||||+||||++..|++.+.+. .++|.+-+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~---g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ---GKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCeEEEEecCc
Confidence 568999999999999999999999988763 56888766543
No 452
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.15 E-value=1.5e-06 Score=63.72 Aligned_cols=28 Identities=36% Similarity=0.527 Sum_probs=25.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++.+++|.|+||||||||.+.|++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999999999873
No 453
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.14 E-value=2.6e-06 Score=68.12 Aligned_cols=28 Identities=46% Similarity=0.671 Sum_probs=25.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++.+++|+||+||||||+|++|++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999999874
No 454
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=2.7e-06 Score=70.25 Aligned_cols=51 Identities=29% Similarity=0.409 Sum_probs=43.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+.|.++|..++.. ++.++.+.++.|-.|..++|+||||-||||||+.|+.+
T Consensus 263 ~DIKiEnF~ISA~------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~R 313 (807)
T KOG0066|consen 263 MDIKIENFDISAQ------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAAR 313 (807)
T ss_pred ccceeeeeeeecc------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhh
Confidence 4566666666553 46789999999999999999999999999999999975
No 455
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.14 E-value=2.2e-06 Score=79.55 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.7
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHH
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLD 81 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~ 81 (122)
..|+++++.|++|++++|.|+||||||||++
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 3789999999999999999999999999999
No 456
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.14 E-value=4e-06 Score=64.92 Aligned_cols=41 Identities=37% Similarity=0.558 Sum_probs=32.0
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
.+...+. +++++++|+||+|||||++.|.|...+. .|++..
T Consensus 154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~---~g~v~~ 194 (287)
T cd01854 154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLA---TGEISE 194 (287)
T ss_pred HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhcc---ccceec
Confidence 3334444 4899999999999999999999987663 676654
No 457
>PRK00098 GTPase RsgA; Reviewed
Probab=98.12 E-value=5.8e-06 Score=64.32 Aligned_cols=35 Identities=43% Similarity=0.632 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
.|.+++++|+||+|||||++.|+|..... .|+|..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~---~g~v~~ 197 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELK---TGEISE 197 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCC---Ccceec
Confidence 58899999999999999999999987653 677764
No 458
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.12 E-value=1.3e-06 Score=72.29 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=32.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++++.++.+..|.+++|+||||+||||++..|++.+.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999764
No 459
>PRK06820 type III secretion system ATPase; Validated
Probab=98.11 E-value=4.1e-06 Score=68.64 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=37.3
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~ 90 (122)
+.++++.+ +.+..|+.++|+|+||+|||||+++|++...+.
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~d 190 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAAD 190 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCC
Confidence 35789999 999999999999999999999999999987664
No 460
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.11 E-value=5.5e-06 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-.++|+|++|||||||++.|.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 35899999999999999999996
No 461
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.11 E-value=3.6e-06 Score=55.30 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+..+.|+||+|+||||+++.|+..+... ..+-+.++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCE
Confidence 5789999999999999999999987652 0134555544
No 462
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.11 E-value=1.9e-06 Score=71.67 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=44.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+++.+++.+..|+.+.|+||+|+|||||++.|.++++| .+|++.+....+
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~---~~~~~~le~~~i 249 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPP---LTNEEAIETARI 249 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCC---CCCcEEEecccc
Confidence 4578899999999999999999999999999999999988 377777765543
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.10 E-value=3.6e-06 Score=62.55 Aligned_cols=29 Identities=38% Similarity=0.441 Sum_probs=23.6
Q ss_pred eEEEcCC--cEEEEEcCCCCcHHHHHHHHhc
Q 033293 57 TGYAQPD--RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 57 s~~i~~g--~~~~IiG~nGsGKSTLl~~L~g 85 (122)
++.+.++ .+++|.||||+||||||+.++.
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 3344444 7899999999999999999983
No 464
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.09 E-value=4.8e-06 Score=59.07 Aligned_cols=34 Identities=38% Similarity=0.428 Sum_probs=27.0
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+..+.++.++.|+|||||||||++++++...
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555666799999999999999999976543
No 465
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=2.4e-06 Score=69.71 Aligned_cols=27 Identities=37% Similarity=0.665 Sum_probs=25.0
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+..|++++|+||||+||||++..|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999999985
No 466
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.09 E-value=3.2e-06 Score=74.84 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.8
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
.|+++++.|+.|++++|.|+||||||||++.+.
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 589999999999999999999999999998763
No 467
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.09 E-value=4e-06 Score=60.30 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++++++++|+||+|||||++.|.+-..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 348999999999999999999999754
No 468
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.07 E-value=6.3e-06 Score=61.73 Aligned_cols=37 Identities=32% Similarity=0.373 Sum_probs=34.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..+-+++++...++++++|.|||++||||++++++..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 4678999999999999999999999999999999875
No 469
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.06 E-value=4.5e-06 Score=68.29 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=33.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
=++||.|++|||||||++.|.+++.+.....|.|.+++..+
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYL 253 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYL 253 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccC
Confidence 48999999999999999999998865322367888888654
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.05 E-value=5.1e-06 Score=70.44 Aligned_cols=36 Identities=17% Similarity=0.469 Sum_probs=31.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
-+++|.||||||||||++.|+++++. .|.|.+++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~----vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPS----IAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCC----cEEEEEccee
Confidence 38999999999999999999998743 6888888864
No 471
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.04 E-value=4.2e-06 Score=61.36 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=28.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
++.|.||+||||||++++|++.+.+. ..+.|.....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPI 40 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCc
Confidence 78999999999999999998877642 246665544443
No 472
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=6.3e-06 Score=63.26 Aligned_cols=33 Identities=39% Similarity=0.514 Sum_probs=27.6
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++++.+.+.+| +++|+||||||||+++.+|.=
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~~ 43 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALSL 43 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 446677777776 899999999999999999863
No 473
>PLN02165 adenylate isopentenyltransferase
Probab=98.04 E-value=6.2e-06 Score=65.46 Aligned_cols=45 Identities=33% Similarity=0.454 Sum_probs=34.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE-EECCEECC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV-QLNRKKGG 105 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i-~~~g~~~~ 105 (122)
.+|.+++|+||+|||||||...|++.+...+...+++ .+.|.++.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 5678999999999999999999999875332335666 44676654
No 474
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.04 E-value=4.3e-06 Score=55.74 Aligned_cols=23 Identities=61% Similarity=0.911 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|++||||||+.+.|+..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999753
No 475
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.03 E-value=3.8e-06 Score=58.31 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+++|+||+|||||||++.|+...++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCc
Confidence 3789999999999999999998653
No 476
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.03 E-value=5e-06 Score=60.40 Aligned_cols=38 Identities=34% Similarity=0.453 Sum_probs=30.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+++|+|++|||||||++.|..++.+....-|.|...+.
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 79999999999999999999988652222477877544
No 477
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.02 E-value=1.2e-05 Score=59.81 Aligned_cols=33 Identities=33% Similarity=0.505 Sum_probs=26.5
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++.+.+.+| +.+|+|+|||||||||.+|.-.+
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l 47 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGL 47 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4556666555 88999999999999999987654
No 478
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.3e-06 Score=67.92 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=32.8
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++..++.+..|++++|+||||+||||++..|+...
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567778889999999999999999999999999864
No 479
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.02 E-value=4.4e-06 Score=59.60 Aligned_cols=41 Identities=29% Similarity=0.417 Sum_probs=32.4
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
..+|.+++|.|++||||||+.+.|+..+... ..+.+.+++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~~~d 44 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYLDGD 44 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEecH
Confidence 4678899999999999999999999877532 2566677653
No 480
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.1e-06 Score=73.28 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=32.8
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++++.++.+..|++++++||||+||||++..|++.+.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 4667788888899999999999999999999999764
No 481
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.00 E-value=6.7e-06 Score=72.45 Aligned_cols=31 Identities=39% Similarity=0.591 Sum_probs=23.6
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHH---HhcCc
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDA---LAGRL 87 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~---L~gl~ 87 (122)
+.+.+.+| +++|+|||||||||||.+ ++|..
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~~~lg~~ 50 (1179)
T TIGR02168 17 TTINFDKG-ITGIVGPNGCGKSNIVDAIRWVLGEQ 50 (1179)
T ss_pred eeEEecCC-cEEEECCCCCChhHHHHHHHHHHcCC
Confidence 34455555 999999999999999955 55543
No 482
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.98 E-value=5.4e-06 Score=56.25 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 033293 66 MAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 66 ~~IiG~nGsGKSTLl~~L~gl 86 (122)
++|+|++|||||||++.|.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 589999999999999999986
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.97 E-value=3.5e-06 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---cCcCC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALA---GRLSK 89 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~---gl~~~ 89 (122)
-.+++|+|++||||||+.+.|+ |+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3589999999999999999999 65543
No 484
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=8.6e-06 Score=62.32 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=27.3
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++.++.+.+| +++|+|||||||||++.+|.-+.
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~ 45 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLA 45 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhc
Confidence 34556677665 78999999999999999987554
No 485
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=2e-05 Score=70.36 Aligned_cols=28 Identities=43% Similarity=0.584 Sum_probs=23.3
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
|+|.-.+ .+++|+|||||||||+|.+|+
T Consensus 20 idF~~~~-gl~~I~G~nGaGKSTildAI~ 47 (1042)
T TIGR00618 20 IDFTALG-PIFLICGKTGAGKTTLLDAIT 47 (1042)
T ss_pred eeecCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4454333 799999999999999999999
No 486
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.96 E-value=6.4e-06 Score=58.72 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=26.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
++|++++|+|++||||||+.+.|++.+.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998754
No 487
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.96 E-value=7.8e-06 Score=59.59 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.++|+|++|+|||||+++|+|...+
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 3789999999999999999997654
No 488
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.95 E-value=8.8e-06 Score=61.14 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEcCCcEEEEEcCCCCcHHHH-HHHHhcCcCC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTL-LDALAGRLSK 89 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTL-l~~L~gl~~~ 89 (122)
.-+++|+++.|.|++||||||| +++++++.++
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~ 51 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQN 51 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3489999999999999999999 6888887654
No 489
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=97.94 E-value=6.5e-06 Score=65.87 Aligned_cols=50 Identities=32% Similarity=0.375 Sum_probs=39.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
+-+.+..+++.+++.+.|+||||+||||+|.++-..+.+. ..|.+.+..+
T Consensus 12 r~f~~lditf~e~~ttIivgpNGsGKTtvLdair~aL~~f--id~~i~~~~k 61 (440)
T COG3950 12 RCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRNALNKF--IDFFIYLRFK 61 (440)
T ss_pred hhhhhceeecCCCceEEEECCCCCChhhHHHHHHHHHHhh--ccceeecccc
Confidence 3456788999999999999999999999999998766553 3455555443
No 490
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.94 E-value=9.1e-06 Score=59.77 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=23.8
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
...+.+.+ .+++|+||||+|||+++.+|.
T Consensus 17 ~~~~~~~~-~~~~i~G~NGsGKS~ileAi~ 45 (220)
T PF02463_consen 17 NAELSFSP-GLNVIVGPNGSGKSNILEAIE 45 (220)
T ss_dssp EEEEETTS-SEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEecCC-CCEEEEcCCCCCHHHHHHHHH
Confidence 45555554 499999999999999999993
No 491
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=97.94 E-value=1.2e-05 Score=65.88 Aligned_cols=36 Identities=31% Similarity=0.286 Sum_probs=32.9
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~ 90 (122)
|.-+.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d 185 (442)
T PRK08927 150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD 185 (442)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 566889999999999999999999999999988764
No 492
>PRK00064 recF recombination protein F; Reviewed
Probab=97.93 E-value=1.1e-05 Score=64.28 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=29.8
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-+.++++.+.+| +++|+|||||||||||.+|..+.
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~l~ 47 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYLLA 47 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHHhC
Confidence 445678888887 99999999999999999998654
No 493
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.93 E-value=1.1e-05 Score=58.40 Aligned_cols=27 Identities=44% Similarity=0.696 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++.+.+|+||||||||++|.+|.-.+
T Consensus 20 ~~~~~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 20 GSNSFNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 333499999999999999999986443
No 494
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.92 E-value=1.6e-05 Score=71.12 Aligned_cols=33 Identities=42% Similarity=0.639 Sum_probs=28.2
Q ss_pred eceEEE---cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 55 GLTGYA---QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 55 ~is~~i---~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.|+|.. ..+.+++|+|||||||||+|.+|+..+
T Consensus 19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aL 54 (1047)
T PRK10246 19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLAL 54 (1047)
T ss_pred eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 588874 458899999999999999999999644
No 495
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.92 E-value=1.1e-05 Score=56.37 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.6
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.-.+++|.+++|.|+.|||||||.+.++..+.
T Consensus 16 ~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 16 AKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 33468899999999999999999999997653
No 496
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.91 E-value=1.4e-05 Score=62.30 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=31.2
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
|.-..+.+++|+|++||||||||+.|.+.+... .+.+.+.|
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~---~~~~VI~g 139 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS---VPCAVIEG 139 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC---CCEEEECC
Confidence 344667899999999999999999999887653 34444443
No 497
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.91 E-value=8.9e-06 Score=70.74 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=29.2
Q ss_pred eceEEEcCC-cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 55 GLTGYAQPD-RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 55 ~is~~i~~g-~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+++.+..+ ++++|.||||+||||||+++++.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 478888877 89999999999999999999987
No 498
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.91 E-value=1e-05 Score=66.78 Aligned_cols=31 Identities=48% Similarity=0.879 Sum_probs=29.0
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCCC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSKN 90 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~ 90 (122)
..+|++++|+|+||-||||.+++|+|.+.|+
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN 127 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN 127 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC
Confidence 4789999999999999999999999999875
No 499
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.91 E-value=2.3e-06 Score=61.17 Aligned_cols=23 Identities=48% Similarity=0.752 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|+|+|||||||+|++|..+.
T Consensus 1 i~viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 1 INVIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp -----------------------
T ss_pred CCccccccccccccccccccccc
Confidence 46899999999999999998663
No 500
>PRK07261 topology modulation protein; Provisional
Probab=97.90 E-value=1.2e-05 Score=57.73 Aligned_cols=24 Identities=50% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++|+|++|||||||.+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987653
Done!