Query 033293
Match_columns 122
No_of_seqs 321 out of 2731
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pcj_A ABC transporter, lipopr 99.8 2.2E-20 7.5E-25 138.2 10.8 78 31-117 4-90 (224)
2 3tui_C Methionine import ATP-b 99.8 2.2E-20 7.4E-25 147.7 11.3 84 29-117 22-113 (366)
3 3tif_A Uncharacterized ABC tra 99.8 2.7E-20 9.2E-25 138.7 10.3 81 32-117 2-91 (235)
4 1ji0_A ABC transporter; ATP bi 99.8 4.1E-20 1.4E-24 137.9 11.0 79 30-117 5-89 (240)
5 3gfo_A Cobalt import ATP-bindi 99.8 3E-20 1E-24 141.7 10.0 80 30-117 6-92 (275)
6 1vpl_A ABC transporter, ATP-bi 99.8 4.5E-20 1.6E-24 139.3 10.6 80 29-117 13-96 (256)
7 2olj_A Amino acid ABC transpor 99.8 2E-20 6.8E-25 141.8 8.6 78 31-117 24-108 (263)
8 1g6h_A High-affinity branched- 99.8 3.3E-20 1.1E-24 139.7 9.4 79 30-117 6-90 (257)
9 1sgw_A Putative ABC transporte 99.8 3.1E-20 1.1E-24 137.0 8.8 78 30-117 9-86 (214)
10 2ihy_A ABC transporter, ATP-bi 99.8 5.8E-20 2E-24 140.2 10.0 79 30-117 20-105 (279)
11 1b0u_A Histidine permease; ABC 99.8 3.7E-20 1.3E-24 139.9 8.6 66 31-105 6-71 (262)
12 3fvq_A Fe(3+) IONS import ATP- 99.8 6.6E-20 2.2E-24 144.7 9.7 77 31-116 4-87 (359)
13 4g1u_C Hemin import ATP-bindin 99.8 1.3E-19 4.5E-24 137.4 10.8 79 30-117 10-93 (266)
14 2ff7_A Alpha-hemolysin translo 99.8 1.1E-19 3.6E-24 136.4 9.4 80 31-117 7-91 (247)
15 3rlf_A Maltose/maltodextrin im 99.8 1.5E-19 5E-24 143.6 10.6 77 31-116 3-82 (381)
16 1mv5_A LMRA, multidrug resista 99.8 7.8E-20 2.7E-24 136.6 8.4 78 32-117 2-84 (243)
17 3nh6_A ATP-binding cassette SU 99.8 1.2E-19 4.3E-24 140.3 9.4 80 30-117 52-136 (306)
18 2yyz_A Sugar ABC transporter, 99.8 2.7E-19 9.2E-24 141.1 10.7 78 31-117 3-83 (359)
19 2yz2_A Putative ABC transporte 99.8 2.1E-19 7E-24 136.0 9.6 81 31-117 2-86 (266)
20 1g29_1 MALK, maltose transport 99.8 3.6E-19 1.2E-23 140.9 10.9 78 31-117 3-89 (372)
21 2ixe_A Antigen peptide transpo 99.8 1.5E-19 5.2E-24 137.3 8.2 82 30-117 15-101 (271)
22 1v43_A Sugar-binding transport 99.8 4.1E-19 1.4E-23 140.6 11.0 78 31-117 11-91 (372)
23 2it1_A 362AA long hypothetical 99.8 3.6E-19 1.2E-23 140.5 10.1 77 31-116 3-82 (362)
24 1z47_A CYSA, putative ABC-tran 99.8 2.8E-19 9.4E-24 140.9 9.3 80 30-117 13-95 (355)
25 1oxx_K GLCV, glucose, ABC tran 99.8 3E-19 1E-23 140.5 9.0 78 31-117 3-90 (353)
26 2pze_A Cystic fibrosis transme 99.8 5.5E-19 1.9E-23 131.0 8.9 71 31-116 6-76 (229)
27 2zu0_C Probable ATP-dependent 99.8 5.6E-19 1.9E-23 133.8 8.4 79 30-117 19-105 (267)
28 2d2e_A SUFC protein; ABC-ATPas 99.8 5.2E-19 1.8E-23 132.7 8.1 77 31-116 3-87 (250)
29 2cbz_A Multidrug resistance-as 99.8 7.2E-19 2.4E-23 131.1 8.3 71 31-116 3-73 (237)
30 3d31_A Sulfate/molybdate ABC t 99.8 3.9E-19 1.3E-23 139.6 7.1 75 32-116 2-79 (348)
31 2ghi_A Transport protein; mult 99.8 7.1E-19 2.4E-23 132.8 8.0 81 30-117 16-101 (260)
32 2onk_A Molybdate/tungstate ABC 99.8 1.5E-18 5E-23 129.9 9.1 73 32-116 2-77 (240)
33 2pjz_A Hypothetical protein ST 99.8 2E-18 6.7E-23 130.9 9.6 79 32-117 2-83 (263)
34 2nq2_C Hypothetical ABC transp 99.7 4.9E-18 1.7E-22 127.8 9.5 71 31-117 4-74 (253)
35 2qi9_C Vitamin B12 import ATP- 99.7 2.6E-18 8.9E-23 129.2 7.7 73 31-117 4-81 (249)
36 3gd7_A Fusion complex of cysti 99.7 2.8E-18 9.6E-23 136.5 8.3 80 30-117 18-102 (390)
37 4a82_A Cystic fibrosis transme 99.7 1.2E-17 4.2E-22 137.8 8.2 81 30-117 338-423 (578)
38 3b5x_A Lipid A export ATP-bind 99.7 2.1E-17 7.1E-22 136.4 9.5 81 30-117 340-425 (582)
39 2yl4_A ATP-binding cassette SU 99.7 1.8E-17 6.3E-22 137.1 8.6 80 32-117 342-426 (595)
40 3b60_A Lipid A export ATP-bind 99.7 1.8E-17 6.1E-22 136.8 8.2 81 30-117 340-425 (582)
41 3qf4_A ABC transporter, ATP-bi 99.7 1.6E-17 5.4E-22 137.5 7.2 80 30-116 340-424 (587)
42 2bbs_A Cystic fibrosis transme 99.7 1.9E-17 6.6E-22 127.0 6.4 68 30-116 39-106 (290)
43 3qf4_B Uncharacterized ABC tra 99.7 2.3E-17 8E-22 136.7 6.6 79 30-116 353-436 (598)
44 4f4c_A Multidrug resistance pr 99.7 6.6E-17 2.3E-21 143.8 9.4 81 30-116 1075-1160(1321)
45 4f4c_A Multidrug resistance pr 99.6 1.1E-15 3.8E-20 136.0 10.1 82 30-117 414-500 (1321)
46 3g5u_A MCG1178, multidrug resi 99.6 8.3E-16 2.8E-20 136.5 7.4 81 30-116 386-471 (1284)
47 3g5u_A MCG1178, multidrug resi 99.6 9.4E-16 3.2E-20 136.2 6.9 81 30-116 1029-1114(1284)
48 2iw3_A Elongation factor 3A; a 99.6 4.5E-15 1.6E-19 129.0 7.5 75 30-117 670-744 (986)
49 3bk7_A ABC transporter ATP-bin 99.5 2.1E-14 7.2E-19 119.6 7.3 70 30-117 356-425 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.5 2.3E-14 7.8E-19 117.8 7.2 70 30-117 286-355 (538)
51 3ozx_A RNAse L inhibitor; ATP 99.5 6.8E-14 2.3E-18 115.1 8.1 70 30-116 268-337 (538)
52 1htw_A HI0065; nucleotide-bind 99.5 2.7E-15 9.2E-20 105.8 -1.5 51 50-104 20-70 (158)
53 1z6g_A Guanylate kinase; struc 99.4 1.5E-14 5.1E-19 105.9 1.6 46 51-103 11-56 (218)
54 3euj_A Chromosome partition pr 99.3 2.8E-13 9.7E-18 110.3 2.3 52 50-105 17-68 (483)
55 1yqt_A RNAse L inhibitor; ATP- 99.3 8.2E-13 2.8E-17 108.5 4.3 43 51-97 36-78 (538)
56 3bk7_A ABC transporter ATP-bin 99.3 6.2E-13 2.1E-17 110.8 2.8 43 51-97 106-148 (607)
57 3b85_A Phosphate starvation-in 99.3 6.3E-14 2.1E-18 102.6 -3.9 59 50-116 13-73 (208)
58 2npi_A Protein CLP1; CLP1-PCF1 99.3 2.1E-13 7.2E-18 110.4 -1.6 45 54-101 129-175 (460)
59 1znw_A Guanylate kinase, GMP k 99.3 1E-12 3.6E-17 94.8 2.0 36 51-88 10-45 (207)
60 1tq4_A IIGP1, interferon-induc 99.3 3.7E-13 1.3E-17 107.8 -0.6 52 50-104 36-107 (413)
61 3b9q_A Chloroplast SRP recepto 99.2 6.3E-13 2.2E-17 102.2 -0.1 49 54-105 91-139 (302)
62 2gza_A Type IV secretion syste 99.2 1.3E-12 4.5E-17 102.4 1.6 60 53-115 165-227 (361)
63 3j16_B RLI1P; ribosome recycli 99.2 8.9E-12 3.1E-16 103.9 6.6 56 50-116 360-420 (608)
64 2pt7_A CAG-ALFA; ATPase, prote 99.2 1.1E-12 3.8E-17 101.8 0.6 49 52-103 160-208 (330)
65 2dpy_A FLII, flagellum-specifi 99.2 7.5E-13 2.6E-17 106.5 -0.4 78 31-117 131-221 (438)
66 2v9p_A Replication protein E1; 99.2 4.6E-13 1.6E-17 103.5 -2.3 56 32-100 102-157 (305)
67 2obl_A ESCN; ATPase, hydrolase 99.2 1.3E-12 4.5E-17 102.3 -0.2 64 31-103 45-108 (347)
68 2jeo_A Uridine-cytidine kinase 99.2 4E-12 1.4E-16 93.9 2.4 39 49-87 11-49 (245)
69 2eyu_A Twitching motility prot 99.2 1.4E-12 4.8E-17 98.3 -0.7 51 51-105 15-65 (261)
70 3j16_B RLI1P; ribosome recycli 99.2 7.3E-12 2.5E-16 104.4 3.5 44 50-97 91-134 (608)
71 1s96_A Guanylate kinase, GMP k 99.2 4.9E-12 1.7E-16 93.1 2.1 59 57-116 10-69 (219)
72 2iw3_A Elongation factor 3A; a 99.2 6.1E-11 2.1E-15 103.3 8.8 49 31-85 435-483 (986)
73 3ux8_A Excinuclease ABC, A sub 99.2 1.6E-11 5.4E-16 102.7 4.7 54 50-103 31-109 (670)
74 2og2_A Putative signal recogni 99.2 2.8E-12 9.7E-17 101.0 0.0 49 54-105 148-196 (359)
75 4gp7_A Metallophosphoesterase; 99.2 1.3E-11 4.6E-16 86.8 3.5 27 55-81 1-27 (171)
76 3sop_A Neuronal-specific septi 99.1 1.8E-11 6.1E-16 92.7 2.9 49 65-116 4-54 (270)
77 2yhs_A FTSY, cell division pro 99.1 4.8E-12 1.7E-16 103.5 -0.4 49 53-104 283-331 (503)
78 1tf7_A KAIC; homohexamer, hexa 99.1 5.4E-12 1.8E-16 102.9 -0.4 52 49-103 24-78 (525)
79 3lnc_A Guanylate kinase, GMP k 99.1 2.2E-11 7.6E-16 88.9 2.6 39 50-88 14-53 (231)
80 1qhl_A Protein (cell division 99.1 3.5E-12 1.2E-16 94.8 -1.7 57 57-117 22-91 (227)
81 3ux8_A Excinuclease ABC, A sub 99.1 4.1E-11 1.4E-15 100.2 3.8 35 50-84 335-369 (670)
82 1u0l_A Probable GTPase ENGC; p 99.1 5E-11 1.7E-15 91.1 3.2 56 58-116 164-227 (301)
83 3ozx_A RNAse L inhibitor; ATP 99.1 2.2E-11 7.4E-16 100.2 1.2 35 60-97 22-56 (538)
84 4aby_A DNA repair protein RECN 99.1 4E-11 1.4E-15 94.1 2.0 37 51-88 49-85 (415)
85 3tr0_A Guanylate kinase, GMP k 99.0 7.4E-11 2.5E-15 83.8 3.2 32 57-88 1-32 (205)
86 1zp6_A Hypothetical protein AT 99.0 1.7E-10 5.7E-15 81.2 4.7 40 59-103 5-44 (191)
87 1rj9_A FTSY, signal recognitio 99.0 6.3E-11 2.1E-15 91.2 2.7 41 62-105 101-141 (304)
88 2qm8_A GTPase/ATPase; G protei 99.0 1.3E-11 4.4E-16 96.0 -1.3 52 50-104 42-93 (337)
89 2i3b_A HCR-ntpase, human cance 99.0 3.8E-11 1.3E-15 86.6 0.9 50 63-117 1-53 (189)
90 1sq5_A Pantothenate kinase; P- 99.0 2.8E-11 9.5E-16 92.7 -0.5 50 51-103 49-122 (308)
91 4a74_A DNA repair and recombin 99.0 2.4E-10 8.2E-15 82.1 3.9 46 58-103 20-69 (231)
92 3aez_A Pantothenate kinase; tr 99.0 1.4E-10 4.7E-15 89.5 2.3 30 60-89 87-116 (312)
93 2ehv_A Hypothetical protein PH 99.0 2.1E-10 7E-15 83.4 2.7 41 59-102 26-68 (251)
94 3c8u_A Fructokinase; YP_612366 99.0 1.3E-10 4.5E-15 83.7 1.4 45 60-104 19-63 (208)
95 2rcn_A Probable GTPase ENGC; Y 98.9 6.1E-10 2.1E-14 87.7 4.6 60 53-116 206-268 (358)
96 2oap_1 GSPE-2, type II secreti 98.9 1.2E-10 4.1E-15 95.3 0.4 50 51-103 248-297 (511)
97 2ewv_A Twitching motility prot 98.9 1.1E-10 3.9E-15 91.8 -0.1 55 60-116 133-188 (372)
98 1cr0_A DNA primase/helicase; R 98.9 1.1E-10 3.8E-15 88.0 -0.5 48 50-100 22-70 (296)
99 2yv5_A YJEQ protein; hydrolase 98.9 1E-09 3.5E-14 83.9 4.8 54 59-116 161-222 (302)
100 2qag_B Septin-6, protein NEDD5 98.9 2.3E-10 7.9E-15 92.0 0.7 35 53-87 30-66 (427)
101 3e70_C DPA, signal recognition 98.9 3.6E-10 1.2E-14 87.8 1.7 42 61-105 127-168 (328)
102 3kta_A Chromosome segregation 98.9 1.4E-09 4.9E-14 76.1 4.7 35 54-89 18-52 (182)
103 1t9h_A YLOQ, probable GTPase E 98.9 2.9E-10 9.9E-15 87.8 0.7 45 58-105 168-215 (307)
104 1pui_A ENGB, probable GTP-bind 98.8 2.3E-10 7.8E-15 81.2 -0.8 48 31-87 3-50 (210)
105 2vf7_A UVRA2, excinuclease ABC 98.8 1.3E-09 4.5E-14 93.8 3.7 36 52-87 512-548 (842)
106 2qnr_A Septin-2, protein NEDD5 98.8 1.8E-09 6E-14 82.6 3.9 45 50-104 11-56 (301)
107 3szr_A Interferon-induced GTP- 98.8 4E-10 1.4E-14 93.6 0.3 42 58-104 43-84 (608)
108 1lw7_A Transcriptional regulat 98.8 2.8E-10 9.7E-15 88.6 -0.7 44 53-99 158-207 (365)
109 1p9r_A General secretion pathw 98.8 2E-09 6.8E-14 86.2 4.2 49 52-105 158-206 (418)
110 1ye8_A Protein THEP1, hypothet 98.8 2.6E-09 9E-14 76.0 4.3 47 65-116 2-50 (178)
111 2j41_A Guanylate kinase; GMP, 98.8 2.5E-09 8.7E-14 75.7 3.9 32 58-89 1-32 (207)
112 1lvg_A Guanylate kinase, GMP k 98.8 1E-09 3.6E-14 78.8 1.9 28 61-88 2-29 (198)
113 3asz_A Uridine kinase; cytidin 98.8 1.4E-09 4.6E-14 77.9 2.1 29 60-88 3-31 (211)
114 3nwj_A ATSK2; P loop, shikimat 98.8 2.7E-10 9.1E-15 85.5 -1.8 54 30-88 16-73 (250)
115 3a00_A Guanylate kinase, GMP k 98.8 1.6E-09 5.6E-14 76.7 2.0 27 63-89 1-27 (186)
116 3vaa_A Shikimate kinase, SK; s 98.7 5E-09 1.7E-13 74.8 3.4 38 50-87 12-49 (199)
117 1kgd_A CASK, peripheral plasma 98.7 5.5E-09 1.9E-13 73.7 3.3 29 61-89 3-31 (180)
118 4eun_A Thermoresistant glucoki 98.7 4.5E-09 1.5E-13 75.1 2.8 42 55-103 21-62 (200)
119 2w0m_A SSO2452; RECA, SSPF, un 98.7 1.5E-09 5.2E-14 77.6 -0.1 49 50-101 9-58 (235)
120 2f1r_A Molybdopterin-guanine d 98.7 2E-09 6.7E-14 76.5 0.2 41 64-104 3-43 (171)
121 2o8b_B DNA mismatch repair pro 98.7 6.7E-09 2.3E-13 90.9 3.5 52 31-88 750-813 (1022)
122 1wb9_A DNA mismatch repair pro 98.7 7.9E-09 2.7E-13 88.5 3.8 37 50-87 595-631 (800)
123 3thx_B DNA mismatch repair pro 98.7 4.5E-09 1.5E-13 91.1 2.2 38 49-86 659-696 (918)
124 3uie_A Adenylyl-sulfate kinase 98.7 2.9E-09 9.9E-14 76.1 0.8 50 51-104 13-64 (200)
125 3jvv_A Twitching mobility prot 98.7 3.7E-09 1.3E-13 82.9 1.2 44 59-104 119-162 (356)
126 2bdt_A BH3686; alpha-beta prot 98.7 6.6E-09 2.3E-13 73.2 2.2 35 63-103 2-36 (189)
127 1udx_A The GTP-binding protein 98.6 2.6E-08 9E-13 79.6 5.3 35 53-87 147-181 (416)
128 2bbw_A Adenylate kinase 4, AK4 98.6 2.7E-09 9.3E-14 78.5 -0.4 37 62-101 26-65 (246)
129 2x8a_A Nuclear valosin-contain 98.6 3.3E-09 1.1E-13 80.0 -0.1 48 50-104 33-80 (274)
130 3thx_A DNA mismatch repair pro 98.6 1.9E-08 6.4E-13 87.4 4.3 34 50-83 649-682 (934)
131 3tau_A Guanylate kinase, GMP k 98.6 2.1E-08 7.3E-13 72.2 3.9 29 61-89 6-34 (208)
132 2qag_C Septin-7; cell cycle, c 98.6 8E-09 2.7E-13 82.7 1.8 47 31-89 11-57 (418)
133 2vp4_A Deoxynucleoside kinase; 98.6 1E-08 3.4E-13 75.0 2.1 41 56-103 13-53 (230)
134 1ewq_A DNA mismatch repair pro 98.6 1.3E-08 4.4E-13 86.9 2.8 36 50-88 566-601 (765)
135 1n0w_A DNA repair protein RAD5 98.6 3.3E-08 1.1E-12 71.4 4.6 46 58-103 19-68 (243)
136 4e22_A Cytidylate kinase; P-lo 98.6 5.2E-09 1.8E-13 77.8 -0.2 41 61-104 25-76 (252)
137 2o5v_A DNA replication and rep 98.6 2.5E-08 8.6E-13 78.4 3.6 34 51-85 15-48 (359)
138 1nij_A Hypothetical protein YJ 98.6 2.3E-08 7.9E-13 76.8 3.0 40 64-106 5-52 (318)
139 1e69_A Chromosome segregation 98.6 6.4E-08 2.2E-12 74.2 5.1 32 55-87 17-48 (322)
140 2ygr_A Uvrabc system protein A 98.5 2.5E-08 8.5E-13 87.0 3.0 33 52-84 657-689 (993)
141 3k1j_A LON protease, ATP-depen 98.5 1.5E-08 5E-13 83.9 1.4 65 50-116 47-111 (604)
142 1oix_A RAS-related protein RAB 98.5 8.6E-08 2.9E-12 67.6 4.6 39 65-103 31-77 (191)
143 2kjq_A DNAA-related protein; s 98.5 3.3E-08 1.1E-12 68.3 2.2 38 62-103 35-74 (149)
144 2r6f_A Excinuclease ABC subuni 98.5 2.5E-08 8.6E-13 86.8 2.0 34 51-84 638-671 (972)
145 1pzn_A RAD51, DNA repair and r 98.5 3.1E-08 1.1E-12 77.2 2.2 52 52-103 119-175 (349)
146 1ixz_A ATP-dependent metallopr 98.5 1.5E-08 5.3E-13 74.4 0.2 45 51-102 39-83 (254)
147 1rz3_A Hypothetical protein rb 98.5 1.9E-08 6.5E-13 72.0 0.6 39 59-100 18-56 (201)
148 3qf7_A RAD50; ABC-ATPase, ATPa 98.5 7.5E-08 2.6E-12 75.4 4.1 34 52-86 13-46 (365)
149 3ec2_A DNA replication protein 98.5 3.1E-08 1.1E-12 69.3 1.6 32 57-88 32-63 (180)
150 1svm_A Large T antigen; AAA+ f 98.5 2E-08 6.9E-13 79.4 0.6 37 51-87 157-193 (377)
151 1iy2_A ATP-dependent metallopr 98.5 1.8E-08 6.2E-13 75.3 0.3 45 51-102 63-107 (278)
152 3pih_A Uvrabc system protein A 98.4 1.2E-07 4.1E-12 82.3 4.6 30 51-80 598-627 (916)
153 1in4_A RUVB, holliday junction 98.4 1.4E-09 4.9E-14 83.7 -6.8 68 50-117 31-111 (334)
154 1kag_A SKI, shikimate kinase I 98.4 7.5E-08 2.6E-12 66.5 2.6 28 62-89 3-30 (173)
155 1zu4_A FTSY; GTPase, signal re 98.4 2.9E-08 9.8E-13 76.8 0.4 48 54-104 96-143 (320)
156 1w1w_A Structural maintenance 98.4 1.3E-07 4.4E-12 75.1 3.8 32 58-89 21-52 (430)
157 3cr8_A Sulfate adenylyltranfer 98.4 5.1E-08 1.8E-12 80.5 1.4 42 59-103 365-408 (552)
158 1knq_A Gluconate kinase; ALFA/ 98.4 1.4E-07 4.8E-12 65.4 3.2 27 61-87 6-32 (175)
159 3ney_A 55 kDa erythrocyte memb 98.4 1.3E-07 4.3E-12 68.8 3.0 30 59-88 15-44 (197)
160 1vma_A Cell division protein F 98.4 6.2E-08 2.1E-12 74.6 0.9 47 55-104 96-142 (306)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 3.1E-07 1.1E-11 72.9 4.7 40 59-101 16-67 (392)
162 3tqc_A Pantothenate kinase; bi 98.4 5.4E-08 1.8E-12 75.5 0.2 39 50-88 73-117 (321)
163 2f9l_A RAB11B, member RAS onco 98.3 3.8E-07 1.3E-11 64.3 4.3 39 65-103 7-53 (199)
164 2qt1_A Nicotinamide riboside k 98.3 2.7E-07 9.2E-12 65.8 3.4 30 58-87 16-45 (207)
165 1tf7_A KAIC; homohexamer, hexa 98.3 9.2E-08 3.1E-12 77.8 1.0 33 57-89 275-307 (525)
166 1f2t_A RAD50 ABC-ATPase; DNA d 98.3 3E-07 1E-11 63.5 3.4 29 56-85 17-45 (149)
167 2cvh_A DNA repair and recombin 98.3 3E-07 1E-11 65.3 3.3 34 52-85 8-42 (220)
168 1ls1_A Signal recognition part 98.3 1.1E-07 3.6E-12 72.6 1.0 46 54-104 91-136 (295)
169 1nlf_A Regulatory protein REPA 98.3 3.8E-07 1.3E-11 68.1 3.5 30 59-88 26-55 (279)
170 2pez_A Bifunctional 3'-phospho 98.2 2.8E-07 9.7E-12 64.2 1.7 28 61-88 3-30 (179)
171 3lda_A DNA repair protein RAD5 98.2 9.6E-07 3.3E-11 70.2 4.7 46 58-103 173-222 (400)
172 2p67_A LAO/AO transport system 98.2 1.4E-07 4.8E-12 73.0 -1.1 40 50-89 43-82 (341)
173 1cke_A CK, MSSA, protein (cyti 98.2 7.2E-07 2.5E-11 64.0 2.4 37 63-99 5-41 (227)
174 2px0_A Flagellar biosynthesis 98.1 6.7E-07 2.3E-11 68.3 2.2 39 61-102 103-142 (296)
175 4eaq_A DTMP kinase, thymidylat 98.1 8E-07 2.7E-11 65.3 2.5 37 52-88 12-51 (229)
176 3qkt_A DNA double-strand break 98.1 1.6E-06 5.3E-11 66.9 4.1 28 56-84 17-44 (339)
177 1jjv_A Dephospho-COA kinase; P 98.1 1.5E-06 5.2E-11 61.7 3.5 22 65-86 4-25 (206)
178 3qks_A DNA double-strand break 98.1 1.6E-06 5.5E-11 62.5 3.4 28 56-84 17-44 (203)
179 2www_A Methylmalonic aciduria 98.1 6.8E-07 2.3E-11 69.5 1.4 38 61-101 72-109 (349)
180 3m6a_A ATP-dependent protease 98.1 4.3E-07 1.5E-11 74.5 -0.1 46 52-101 98-143 (543)
181 2qor_A Guanylate kinase; phosp 98.1 1.9E-06 6.3E-11 61.5 3.1 29 59-87 8-36 (204)
182 4ad8_A DNA repair protein RECN 98.1 5.9E-07 2E-11 72.9 0.2 34 52-86 50-83 (517)
183 1y63_A LMAJ004144AAA protein; 98.0 2.2E-06 7.5E-11 60.2 3.1 32 55-86 2-33 (184)
184 3ice_A Transcription terminati 98.0 5.7E-07 1.9E-11 72.0 -0.1 33 55-87 166-198 (422)
185 1m7g_A Adenylylsulfate kinase; 98.0 9.7E-07 3.3E-11 63.3 1.0 43 58-103 20-64 (211)
186 1sxj_E Activator 1 40 kDa subu 98.0 1.5E-06 5.3E-11 66.1 2.1 35 66-103 39-74 (354)
187 2if2_A Dephospho-COA kinase; a 98.0 2.4E-06 8.3E-11 60.4 2.9 21 65-85 3-23 (204)
188 2gj8_A MNME, tRNA modification 98.0 3.2E-06 1.1E-10 58.5 3.3 26 62-87 3-28 (172)
189 1odf_A YGR205W, hypothetical 3 98.0 2.1E-06 7.1E-11 65.4 2.4 29 61-89 29-57 (290)
190 3auy_A DNA double-strand break 98.0 6.9E-06 2.4E-10 64.0 5.4 30 54-84 17-46 (371)
191 2dr3_A UPF0273 protein PH0284; 98.0 4.4E-06 1.5E-10 60.1 3.7 34 52-85 11-45 (247)
192 3t34_A Dynamin-related protein 97.9 3.2E-06 1.1E-10 65.5 2.5 33 51-86 25-57 (360)
193 1mky_A Probable GTP-binding pr 97.9 1E-05 3.5E-10 64.3 5.4 39 65-103 182-229 (439)
194 2dhr_A FTSH; AAA+ protein, hex 97.9 2E-06 6.8E-11 70.2 1.1 46 51-103 54-99 (499)
195 2yvu_A Probable adenylyl-sulfa 97.9 3.7E-06 1.3E-10 58.8 2.1 30 60-89 10-39 (186)
196 2wji_A Ferrous iron transport 97.9 6.9E-06 2.4E-10 56.1 3.4 23 65-87 5-27 (165)
197 1np6_A Molybdopterin-guanine d 97.9 5.1E-06 1.7E-10 58.9 2.7 38 64-101 7-44 (174)
198 2ffh_A Protein (FFH); SRP54, s 97.9 3.1E-06 1.1E-10 67.9 1.7 45 54-103 91-135 (425)
199 1m2o_B GTP-binding protein SAR 97.9 6.4E-06 2.2E-10 57.7 3.0 34 51-85 12-45 (190)
200 2qtf_A Protein HFLX, GTP-bindi 97.9 1.2E-05 4.2E-10 62.9 4.9 39 65-103 181-227 (364)
201 1ega_A Protein (GTP-binding pr 97.9 4.6E-06 1.6E-10 63.4 2.0 25 63-87 8-32 (301)
202 3t61_A Gluconokinase; PSI-biol 97.8 6.1E-06 2.1E-10 58.4 2.4 25 63-87 18-42 (202)
203 3kb2_A SPBC2 prophage-derived 97.8 1E-05 3.5E-10 55.1 3.2 23 65-87 3-25 (173)
204 3cm0_A Adenylate kinase; ATP-b 97.8 8.9E-06 3.1E-10 56.5 2.9 24 62-85 3-26 (186)
205 3hr8_A Protein RECA; alpha and 97.8 5.9E-06 2E-10 64.8 2.2 32 58-89 56-87 (356)
206 1j8m_F SRP54, signal recogniti 97.8 2.4E-06 8.3E-11 65.2 -0.3 46 54-103 89-135 (297)
207 1qhx_A CPT, protein (chloramph 97.8 1.4E-05 4.8E-10 55.1 3.7 26 63-88 3-28 (178)
208 2zej_A Dardarin, leucine-rich 97.8 1.2E-05 4E-10 55.8 3.3 23 65-87 4-26 (184)
209 2wjg_A FEOB, ferrous iron tran 97.8 1.3E-05 4.3E-10 55.3 3.4 22 65-86 9-30 (188)
210 2ga8_A Hypothetical 39.9 kDa p 97.8 1.6E-06 5.6E-11 68.2 -1.5 37 51-87 10-48 (359)
211 1q3t_A Cytidylate kinase; nucl 97.8 1.6E-05 5.5E-10 57.8 3.5 27 59-85 12-38 (236)
212 1sxj_C Activator 1 40 kDa subu 97.8 2.3E-06 7.8E-11 65.5 -1.2 40 50-89 31-72 (340)
213 1kht_A Adenylate kinase; phosp 97.7 2.1E-05 7E-10 54.5 3.5 25 63-87 3-27 (192)
214 1f6b_A SAR1; gtpases, N-termin 97.7 3E-06 1E-10 59.9 -0.9 34 51-85 14-47 (198)
215 3lw7_A Adenylate kinase relate 97.7 2.2E-05 7.4E-10 53.1 3.2 19 65-83 3-21 (179)
216 2ohf_A Protein OLA1, GTP-bindi 97.7 2.4E-05 8.2E-10 62.2 3.8 28 59-86 18-45 (396)
217 2rhm_A Putative kinase; P-loop 97.7 2.2E-05 7.6E-10 54.5 3.2 27 61-87 3-29 (193)
218 1lv7_A FTSH; alpha/beta domain 97.7 1.3E-05 4.4E-10 58.7 1.9 33 54-88 38-70 (257)
219 2p5t_B PEZT; postsegregational 97.7 1.6E-05 5.4E-10 58.7 2.4 30 59-88 28-57 (253)
220 2jaq_A Deoxyguanosine kinase; 97.7 2.5E-05 8.6E-10 54.6 3.3 23 65-87 2-24 (205)
221 2vf7_A UVRA2, excinuclease ABC 97.7 2.4E-05 8.2E-10 67.5 3.7 31 50-80 23-53 (842)
222 1ypw_A Transitional endoplasmi 97.6 1.9E-05 6.5E-10 67.5 2.6 32 58-89 233-264 (806)
223 1ex7_A Guanylate kinase; subst 97.6 2.8E-05 9.4E-10 55.8 3.0 23 65-87 3-25 (186)
224 3trf_A Shikimate kinase, SK; a 97.6 3.6E-05 1.2E-09 53.4 3.5 25 63-87 5-29 (185)
225 2ze6_A Isopentenyl transferase 97.6 2.7E-05 9.2E-10 57.7 3.0 23 65-87 3-25 (253)
226 1ly1_A Polynucleotide kinase; 97.6 3.6E-05 1.2E-09 52.7 3.3 22 64-85 3-24 (181)
227 2v54_A DTMP kinase, thymidylat 97.6 4.3E-05 1.5E-09 53.6 3.6 26 62-87 3-28 (204)
228 1vht_A Dephospho-COA kinase; s 97.6 4.1E-05 1.4E-09 54.7 3.5 23 63-85 4-26 (218)
229 3r20_A Cytidylate kinase; stru 97.6 3.6E-05 1.2E-09 57.1 3.3 23 63-85 9-31 (233)
230 3lxx_A GTPase IMAP family memb 97.6 3.8E-05 1.3E-09 55.7 3.4 24 65-88 31-54 (239)
231 1gtv_A TMK, thymidylate kinase 97.6 1.5E-05 5.1E-10 56.4 1.1 24 65-88 2-25 (214)
232 3iij_A Coilin-interacting nucl 97.6 3.8E-05 1.3E-09 53.2 3.1 26 61-86 9-34 (180)
233 1via_A Shikimate kinase; struc 97.6 3.9E-05 1.3E-09 53.0 3.0 23 65-87 6-28 (175)
234 2plr_A DTMP kinase, probable t 97.6 4.6E-05 1.6E-09 53.5 3.4 27 62-88 3-29 (213)
235 2wwf_A Thymidilate kinase, put 97.6 5.3E-05 1.8E-09 53.4 3.6 26 61-86 8-33 (212)
236 1nks_A Adenylate kinase; therm 97.6 4.4E-05 1.5E-09 52.7 3.1 24 65-88 3-26 (194)
237 2c95_A Adenylate kinase 1; tra 97.6 5.2E-05 1.8E-09 52.7 3.5 26 61-86 7-32 (196)
238 1uf9_A TT1252 protein; P-loop, 97.5 4.6E-05 1.6E-09 53.3 3.1 23 64-86 9-31 (203)
239 3k53_A Ferrous iron transport 97.5 4.7E-05 1.6E-09 56.5 3.2 23 65-87 5-27 (271)
240 1nn5_A Similar to deoxythymidy 97.5 6.3E-05 2.2E-09 53.0 3.6 26 61-86 7-32 (215)
241 2ygr_A Uvrabc system protein A 97.5 5.1E-05 1.7E-09 66.4 3.6 31 50-80 33-63 (993)
242 2r6f_A Excinuclease ABC subuni 97.5 5.2E-05 1.8E-09 66.2 3.6 31 50-80 31-61 (972)
243 1gvn_B Zeta; postsegregational 97.5 5.2E-05 1.8E-09 57.3 3.1 27 61-87 31-57 (287)
244 3cf0_A Transitional endoplasmi 97.5 6.9E-05 2.3E-09 56.5 3.7 30 59-88 45-74 (301)
245 1tev_A UMP-CMP kinase; ploop, 97.5 6.5E-05 2.2E-09 51.9 3.3 23 63-85 3-25 (196)
246 2zr9_A Protein RECA, recombina 97.5 7.1E-05 2.4E-09 58.3 3.8 30 58-87 56-85 (349)
247 3pih_A Uvrabc system protein A 97.5 4.2E-05 1.4E-09 66.5 2.7 31 50-80 11-41 (916)
248 2z0h_A DTMP kinase, thymidylat 97.5 7.4E-05 2.5E-09 52.0 3.3 23 65-87 2-24 (197)
249 2ged_A SR-beta, signal recogni 97.4 7.2E-05 2.5E-09 51.7 3.0 24 64-87 49-72 (193)
250 3q72_A GTP-binding protein RAD 97.4 7.8E-05 2.7E-09 50.0 3.0 23 65-87 4-26 (166)
251 3ake_A Cytidylate kinase; CMP 97.4 8.7E-05 3E-09 52.1 3.3 23 65-87 4-26 (208)
252 2qag_A Septin-2, protein NEDD5 97.4 3.3E-05 1.1E-09 60.2 1.2 32 50-87 30-61 (361)
253 2nzj_A GTP-binding protein REM 97.4 9.4E-05 3.2E-09 49.9 3.4 23 65-87 6-28 (175)
254 2bwj_A Adenylate kinase 5; pho 97.4 9E-05 3.1E-09 51.6 3.3 28 60-87 9-36 (199)
255 1xjc_A MOBB protein homolog; s 97.4 5.6E-05 1.9E-09 53.5 2.2 25 64-88 5-29 (169)
256 1z2a_A RAS-related protein RAB 97.4 8.7E-05 3E-09 49.6 3.0 22 65-86 7-28 (168)
257 2erx_A GTP-binding protein DI- 97.4 0.0001 3.5E-09 49.4 3.4 22 65-86 5-26 (172)
258 2dy1_A Elongation factor G; tr 97.4 5.7E-05 2E-09 63.3 2.4 32 57-88 3-34 (665)
259 3fb4_A Adenylate kinase; psych 97.4 9.8E-05 3.3E-09 52.4 3.3 22 65-86 2-23 (216)
260 3q85_A GTP-binding protein REM 97.4 0.00011 3.9E-09 49.3 3.4 23 65-87 4-26 (169)
261 1aky_A Adenylate kinase; ATP:A 97.4 0.00012 4.1E-09 52.4 3.7 26 62-87 3-28 (220)
262 2ce2_X GTPase HRAS; signaling 97.4 9.3E-05 3.2E-09 49.1 2.9 23 65-87 5-27 (166)
263 4ag6_A VIRB4 ATPase, type IV s 97.4 7E-05 2.4E-09 58.3 2.6 35 62-99 34-68 (392)
264 1kao_A RAP2A; GTP-binding prot 97.4 9E-05 3.1E-09 49.3 2.8 22 65-86 5-26 (167)
265 2pbr_A DTMP kinase, thymidylat 97.4 0.00011 3.8E-09 50.8 3.3 23 65-87 2-24 (195)
266 1fzq_A ADP-ribosylation factor 97.4 9.7E-05 3.3E-09 51.1 3.0 22 65-86 18-39 (181)
267 2vli_A Antibiotic resistance p 97.4 8E-05 2.7E-09 51.3 2.5 26 62-87 4-29 (183)
268 3tw8_B RAS-related protein RAB 97.4 9.5E-05 3.2E-09 50.1 2.9 23 65-87 11-33 (181)
269 1u8z_A RAS-related protein RAL 97.4 9.3E-05 3.2E-09 49.3 2.8 22 65-86 6-27 (168)
270 3b1v_A Ferrous iron uptake tra 97.4 0.00011 3.7E-09 55.2 3.4 23 65-87 5-27 (272)
271 2dyk_A GTP-binding protein; GT 97.4 0.00011 3.6E-09 49.0 3.0 23 65-87 3-25 (161)
272 2r6a_A DNAB helicase, replicat 97.4 4E-05 1.4E-09 61.2 1.0 38 51-88 191-228 (454)
273 1svi_A GTP-binding protein YSX 97.4 0.00011 3.8E-09 50.7 3.1 24 64-87 24-47 (195)
274 2lkc_A Translation initiation 97.4 0.00016 5.4E-09 49.0 3.8 24 63-86 8-31 (178)
275 1zd8_A GTP:AMP phosphotransfer 97.4 0.00012 4.1E-09 52.7 3.4 25 62-86 6-30 (227)
276 1zuh_A Shikimate kinase; alpha 97.4 0.00013 4.4E-09 49.9 3.4 24 64-87 8-31 (168)
277 3pqc_A Probable GTP-binding pr 97.4 0.00012 4E-09 50.3 3.1 23 65-87 25-47 (195)
278 1z0j_A RAB-22, RAS-related pro 97.3 0.0001 3.5E-09 49.4 2.8 23 65-87 8-30 (170)
279 3dl0_A Adenylate kinase; phosp 97.3 0.00012 4.1E-09 52.0 3.3 22 65-86 2-23 (216)
280 1g16_A RAS-related protein SEC 97.3 9.7E-05 3.3E-09 49.5 2.6 23 65-87 5-27 (170)
281 1e6c_A Shikimate kinase; phosp 97.3 9.8E-05 3.3E-09 50.4 2.7 23 65-87 4-26 (173)
282 1ek0_A Protein (GTP-binding pr 97.3 0.0001 3.5E-09 49.3 2.8 23 65-87 5-27 (170)
283 1z08_A RAS-related protein RAB 97.3 0.00011 3.9E-09 49.3 3.0 22 65-86 8-29 (170)
284 1qf9_A UMP/CMP kinase, protein 97.3 0.00012 4.2E-09 50.5 3.2 23 64-86 7-29 (194)
285 1c1y_A RAS-related protein RAP 97.3 0.00011 3.7E-09 49.2 2.8 22 65-86 5-26 (167)
286 2pt5_A Shikimate kinase, SK; a 97.3 0.00014 4.7E-09 49.5 3.3 22 65-86 2-23 (168)
287 1ky3_A GTP-binding protein YPT 97.3 0.00012 4.2E-09 49.5 3.0 23 65-87 10-32 (182)
288 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00011 3.8E-09 49.7 2.8 22 65-86 9-30 (177)
289 2ius_A DNA translocase FTSK; n 97.3 9.4E-05 3.2E-09 60.6 2.7 31 55-85 159-189 (512)
290 2cxx_A Probable GTP-binding pr 97.3 0.00014 4.6E-09 49.9 3.2 23 65-87 3-25 (190)
291 1zak_A Adenylate kinase; ATP:A 97.3 0.00012 4.1E-09 52.4 3.0 26 62-87 4-29 (222)
292 2cdn_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 50.8 3.7 24 63-86 20-43 (201)
293 2fn4_A P23, RAS-related protei 97.3 0.00012 4.2E-09 49.5 2.9 22 65-86 11-32 (181)
294 3clv_A RAB5 protein, putative; 97.3 0.00013 4.5E-09 50.0 3.0 22 65-86 9-30 (208)
295 3kl4_A SRP54, signal recogniti 97.3 6.5E-05 2.2E-09 60.4 1.6 37 62-101 96-132 (433)
296 1ukz_A Uridylate kinase; trans 97.3 0.00016 5.6E-09 50.8 3.5 24 63-86 15-38 (203)
297 1r2q_A RAS-related protein RAB 97.3 0.00013 4.4E-09 48.8 2.8 22 65-86 8-29 (170)
298 3llm_A ATP-dependent RNA helic 97.3 9.5E-05 3.3E-09 53.6 2.2 25 60-84 73-97 (235)
299 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00013 4.4E-09 49.8 2.8 23 65-87 6-28 (189)
300 3lxw_A GTPase IMAP family memb 97.3 0.00016 5.4E-09 53.2 3.4 23 65-87 23-45 (247)
301 1uj2_A Uridine-cytidine kinase 97.3 0.00015 5.2E-09 53.1 3.3 23 64-86 23-45 (252)
302 1moz_A ARL1, ADP-ribosylation 97.3 0.00011 3.6E-09 50.2 2.3 22 64-85 19-40 (183)
303 2hxs_A RAB-26, RAS-related pro 97.3 0.00017 5.9E-09 48.8 3.3 23 65-87 8-30 (178)
304 3bos_A Putative DNA replicatio 97.3 0.00019 6.7E-09 50.8 3.7 26 62-87 51-76 (242)
305 3bc1_A RAS-related protein RAB 97.3 0.00015 5.2E-09 49.5 3.0 22 65-86 13-34 (195)
306 3t1o_A Gliding protein MGLA; G 97.3 0.00016 5.3E-09 49.7 3.0 24 65-88 16-39 (198)
307 3iev_A GTP-binding protein ERA 97.3 0.00016 5.6E-09 54.9 3.4 23 64-86 11-33 (308)
308 1upt_A ARL1, ADP-ribosylation 97.3 0.00016 5.6E-09 48.5 3.0 22 65-86 9-30 (171)
309 1v5w_A DMC1, meiotic recombina 97.3 0.00016 5.5E-09 55.8 3.3 29 58-86 117-145 (343)
310 1wf3_A GTP-binding protein; GT 97.3 0.00017 5.8E-09 54.8 3.4 22 65-86 9-30 (301)
311 2iyv_A Shikimate kinase, SK; t 97.3 0.00014 4.9E-09 50.3 2.7 24 64-87 3-26 (184)
312 2oil_A CATX-8, RAS-related pro 97.3 0.00016 5.6E-09 50.0 3.0 22 65-86 27-48 (193)
313 2e87_A Hypothetical protein PH 97.2 0.00016 5.5E-09 55.9 3.1 26 62-87 166-191 (357)
314 2a9k_A RAS-related protein RAL 97.2 0.00018 6.1E-09 48.9 3.0 22 65-86 20-41 (187)
315 1r8s_A ADP-ribosylation factor 97.2 0.00018 6.2E-09 48.1 3.0 21 65-85 2-22 (164)
316 2qby_A CDC6 homolog 1, cell di 97.2 0.00014 4.8E-09 55.0 2.7 28 61-88 43-70 (386)
317 2y8e_A RAB-protein 6, GH09086P 97.2 0.00017 5.8E-09 48.7 2.9 22 65-86 16-37 (179)
318 2ce7_A Cell division protein F 97.2 6.2E-05 2.1E-09 61.1 0.7 34 52-87 40-73 (476)
319 3cbq_A GTP-binding protein REM 97.2 0.00016 5.5E-09 50.7 2.8 22 65-86 25-46 (195)
320 2g6b_A RAS-related protein RAB 97.2 0.00019 6.4E-09 48.7 3.0 23 65-87 12-34 (180)
321 1fnn_A CDC6P, cell division co 97.2 0.00016 5.4E-09 55.1 2.9 28 62-89 41-70 (389)
322 3con_A GTPase NRAS; structural 97.2 0.00019 6.4E-09 49.4 3.0 22 65-86 23-44 (190)
323 3b9p_A CG5977-PA, isoform A; A 97.2 0.0002 7E-09 53.1 3.4 26 62-87 53-78 (297)
324 1z0f_A RAB14, member RAS oncog 97.2 0.00019 6.6E-09 48.4 3.0 23 65-87 17-39 (179)
325 2z43_A DNA repair and recombin 97.2 0.00024 8.1E-09 54.3 3.8 29 58-86 102-130 (324)
326 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00022 7.5E-09 52.7 3.4 25 62-86 3-27 (260)
327 3t5d_A Septin-7; GTP-binding p 97.2 0.00017 5.8E-09 53.6 2.8 22 65-86 10-31 (274)
328 3iby_A Ferrous iron transport 97.2 0.00021 7.2E-09 53.0 3.3 23 65-87 3-25 (256)
329 1ko7_A HPR kinase/phosphatase; 97.2 0.00039 1.3E-08 53.7 4.8 36 50-86 132-167 (314)
330 1jbk_A CLPB protein; beta barr 97.2 0.00028 9.5E-09 47.8 3.6 26 62-87 42-67 (195)
331 2efe_B Small GTP-binding prote 97.2 0.00021 7.2E-09 48.5 3.0 22 65-86 14-35 (181)
332 2xb4_A Adenylate kinase; ATP-b 97.2 0.00022 7.7E-09 51.4 3.3 22 65-86 2-23 (223)
333 2grj_A Dephospho-COA kinase; T 97.2 0.00023 8E-09 50.9 3.3 23 64-86 13-35 (192)
334 2bov_A RAla, RAS-related prote 97.2 0.00019 6.5E-09 49.8 2.8 22 65-86 16-37 (206)
335 1nrj_B SR-beta, signal recogni 97.2 0.00021 7.2E-09 50.4 3.0 23 65-87 14-36 (218)
336 2f6r_A COA synthase, bifunctio 97.2 0.00021 7.1E-09 53.7 3.1 22 64-85 76-97 (281)
337 2bme_A RAB4A, RAS-related prot 97.2 0.00021 7.3E-09 48.8 2.9 23 65-87 12-34 (186)
338 1ksh_A ARF-like protein 2; sma 97.2 0.00025 8.7E-09 48.6 3.3 25 63-87 18-42 (186)
339 3ihw_A Centg3; RAS, centaurin, 97.2 0.00022 7.5E-09 49.5 3.0 22 65-86 22-43 (184)
340 1vg8_A RAS-related protein RAB 97.2 0.00022 7.7E-09 49.6 3.0 23 65-87 10-32 (207)
341 2xtp_A GTPase IMAP family memb 97.2 0.00024 8E-09 52.0 3.2 23 65-87 24-46 (260)
342 2gf0_A GTP-binding protein DI- 97.2 0.00019 6.6E-09 49.5 2.6 22 65-86 10-31 (199)
343 3tkl_A RAS-related protein RAB 97.2 0.00023 7.9E-09 49.0 3.0 23 65-87 18-40 (196)
344 1m7b_A RND3/RHOE small GTP-bin 97.2 0.00022 7.6E-09 49.1 2.9 22 65-86 9-30 (184)
345 1jal_A YCHF protein; nucleotid 97.2 0.00038 1.3E-08 54.7 4.5 23 64-86 3-25 (363)
346 4fcw_A Chaperone protein CLPB; 97.2 0.00023 7.7E-09 53.0 3.1 26 64-89 48-73 (311)
347 2gf9_A RAS-related protein RAB 97.2 0.00021 7.3E-09 49.3 2.8 23 65-87 24-46 (189)
348 1zbd_A Rabphilin-3A; G protein 97.1 0.00026 8.8E-09 49.3 3.1 23 65-87 10-32 (203)
349 3kkq_A RAS-related protein M-R 97.1 0.00025 8.5E-09 48.4 3.0 22 65-86 20-41 (183)
350 1a7j_A Phosphoribulokinase; tr 97.1 0.00015 5E-09 55.0 2.0 24 63-86 5-28 (290)
351 1mh1_A RAC1; GTP-binding, GTPa 97.1 0.00026 8.7E-09 48.2 3.0 22 65-86 7-28 (186)
352 3tlx_A Adenylate kinase 2; str 97.1 0.00029 9.9E-09 51.6 3.5 24 62-85 28-51 (243)
353 2cjw_A GTP-binding protein GEM 97.1 0.00026 8.8E-09 49.6 3.0 21 65-85 8-28 (192)
354 1e4v_A Adenylate kinase; trans 97.1 0.00027 9.2E-09 50.4 3.2 22 65-86 2-23 (214)
355 2h57_A ADP-ribosylation factor 97.1 0.00023 7.8E-09 49.2 2.7 23 65-87 23-45 (190)
356 4bas_A ADP-ribosylation factor 97.1 0.00028 9.6E-09 48.7 3.1 23 65-87 19-41 (199)
357 2il1_A RAB12; G-protein, GDP, 97.1 0.00025 8.5E-09 49.3 2.9 23 65-87 28-50 (192)
358 2fg5_A RAB-22B, RAS-related pr 97.1 0.00025 8.5E-09 49.2 2.9 23 65-87 25-47 (192)
359 2wsm_A Hydrogenase expression/ 97.1 0.00025 8.4E-09 50.2 2.9 23 64-86 31-53 (221)
360 2qu8_A Putative nucleolar GTP- 97.1 0.00029 1E-08 50.4 3.3 22 65-86 31-52 (228)
361 1jwy_B Dynamin A GTPase domain 97.1 0.00027 9.1E-09 52.9 3.2 23 65-87 26-48 (315)
362 1ltq_A Polynucleotide kinase; 97.1 0.00028 9.7E-09 52.5 3.3 22 64-85 3-24 (301)
363 3oes_A GTPase rhebl1; small GT 97.1 0.00026 8.9E-09 49.5 2.9 23 65-87 26-48 (201)
364 4dhe_A Probable GTP-binding pr 97.1 0.00014 4.7E-09 51.5 1.4 23 65-87 31-53 (223)
365 3a1s_A Iron(II) transport prot 97.1 0.0003 1E-08 52.1 3.4 23 65-87 7-29 (258)
366 3t5g_A GTP-binding protein RHE 97.1 0.00027 9.3E-09 48.1 2.9 21 65-85 8-28 (181)
367 2w58_A DNAI, primosome compone 97.1 0.00035 1.2E-08 49.0 3.5 25 64-88 55-79 (202)
368 1zj6_A ADP-ribosylation factor 97.1 0.00032 1.1E-08 48.3 3.3 22 65-86 18-39 (187)
369 3dz8_A RAS-related protein RAB 97.1 0.00028 9.4E-09 48.9 2.9 23 65-87 25-47 (191)
370 2o52_A RAS-related protein RAB 97.1 0.00029 1E-08 49.4 3.0 22 65-86 27-48 (200)
371 1z06_A RAS-related protein RAB 97.1 0.00029 1E-08 48.6 3.0 22 65-86 22-43 (189)
372 3i8s_A Ferrous iron transport 97.1 0.0003 1E-08 52.5 3.2 23 65-87 5-27 (274)
373 1x3s_A RAS-related protein RAB 97.1 0.0003 1E-08 48.2 3.0 23 65-87 17-39 (195)
374 3be4_A Adenylate kinase; malar 97.1 0.00033 1.1E-08 50.1 3.3 25 63-87 5-29 (217)
375 2a5j_A RAS-related protein RAB 97.1 0.00032 1.1E-08 48.6 3.0 23 65-87 23-45 (191)
376 3cph_A RAS-related protein SEC 97.1 0.00028 9.7E-09 49.3 2.8 22 65-86 22-43 (213)
377 2h17_A ADP-ribosylation factor 97.1 0.0003 1E-08 48.3 2.9 22 65-86 23-44 (181)
378 2dby_A GTP-binding protein; GD 97.1 0.00025 8.5E-09 55.7 2.7 22 65-86 3-24 (368)
379 2f7s_A C25KG, RAS-related prot 97.1 0.00037 1.3E-08 49.1 3.4 23 65-87 27-49 (217)
380 2bcg_Y Protein YP2, GTP-bindin 97.1 0.0003 1E-08 49.1 2.9 22 65-86 10-31 (206)
381 3reg_A RHO-like small GTPase; 97.1 0.00033 1.1E-08 48.5 3.0 23 65-87 25-47 (194)
382 2atv_A RERG, RAS-like estrogen 97.1 0.0003 1E-08 48.9 2.8 22 65-86 30-51 (196)
383 1zd9_A ADP-ribosylation factor 97.0 0.00034 1.2E-08 48.3 3.0 22 65-86 24-45 (188)
384 2aka_B Dynamin-1; fusion prote 97.0 0.00034 1.2E-08 51.8 3.1 23 65-87 28-50 (299)
385 2ew1_A RAS-related protein RAB 97.0 0.00033 1.1E-08 49.6 2.9 22 65-86 28-49 (201)
386 2p5s_A RAS and EF-hand domain 97.0 0.00035 1.2E-08 48.7 3.0 23 65-87 30-52 (199)
387 2q3h_A RAS homolog gene family 97.0 0.00042 1.4E-08 48.1 3.4 22 65-86 22-43 (201)
388 3zvl_A Bifunctional polynucleo 97.0 0.0004 1.4E-08 55.0 3.6 26 61-86 256-281 (416)
389 3bwd_D RAC-like GTP-binding pr 97.0 0.00045 1.5E-08 46.9 3.4 22 65-86 10-31 (182)
390 3llu_A RAS-related GTP-binding 97.0 0.00041 1.4E-08 48.3 3.3 23 65-87 22-44 (196)
391 2iwr_A Centaurin gamma 1; ANK 97.0 0.00025 8.6E-09 48.2 2.1 22 65-86 9-30 (178)
392 3h4m_A Proteasome-activating n 97.0 0.00044 1.5E-08 50.9 3.5 29 60-88 48-76 (285)
393 1ak2_A Adenylate kinase isoenz 97.0 0.0005 1.7E-08 49.7 3.7 26 62-87 15-40 (233)
394 2fv8_A H6, RHO-related GTP-bin 97.0 0.00036 1.2E-08 49.0 2.9 23 65-87 27-49 (207)
395 2j1l_A RHO-related GTP-binding 97.0 0.00043 1.5E-08 49.1 3.2 22 65-86 36-57 (214)
396 2fh5_B SR-beta, signal recogni 97.0 0.00039 1.3E-08 48.8 3.0 23 65-87 9-31 (214)
397 1gwn_A RHO-related GTP-binding 97.0 0.00038 1.3E-08 49.4 2.9 23 65-87 30-52 (205)
398 3c5c_A RAS-like protein 12; GD 97.0 0.0004 1.4E-08 48.1 3.0 22 65-86 23-44 (187)
399 2zts_A Putative uncharacterize 97.0 0.00057 1.9E-08 48.9 3.9 27 58-84 25-51 (251)
400 2p65_A Hypothetical protein PF 97.0 0.00037 1.3E-08 47.3 2.7 26 62-87 42-67 (187)
401 1njg_A DNA polymerase III subu 97.0 0.00056 1.9E-08 47.8 3.7 23 65-87 47-69 (250)
402 2i1q_A DNA repair and recombin 97.0 0.00048 1.6E-08 52.2 3.5 28 58-85 93-120 (322)
403 3d3q_A TRNA delta(2)-isopenten 97.0 0.00043 1.5E-08 54.0 3.3 24 64-87 8-31 (340)
404 1l8q_A Chromosomal replication 97.0 0.00033 1.1E-08 52.8 2.6 25 63-87 37-61 (324)
405 3a8t_A Adenylate isopentenyltr 97.0 0.00058 2E-08 53.3 4.0 27 62-88 39-65 (339)
406 2b6h_A ADP-ribosylation factor 97.0 0.00044 1.5E-08 48.2 3.0 22 65-86 31-52 (192)
407 4edh_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 49.7 3.5 27 62-88 5-31 (213)
408 2fu5_C RAS-related protein RAB 97.0 0.00027 9.4E-09 48.2 1.8 22 65-86 10-31 (183)
409 2qmh_A HPR kinase/phosphorylas 96.9 0.00077 2.6E-08 49.2 4.2 35 52-87 24-58 (205)
410 2gco_A H9, RHO-related GTP-bin 96.9 0.00046 1.6E-08 48.3 2.9 22 65-86 27-48 (201)
411 3def_A T7I23.11 protein; chlor 96.9 0.00051 1.7E-08 50.6 3.2 23 65-87 38-60 (262)
412 2hf9_A Probable hydrogenase ni 96.9 0.00052 1.8E-08 48.7 3.2 24 64-87 39-62 (226)
413 3lv8_A DTMP kinase, thymidylat 96.9 0.0006 2E-08 50.4 3.6 27 62-88 26-52 (236)
414 3bh0_A DNAB-like replicative h 96.9 0.00059 2E-08 52.0 3.6 35 51-85 56-90 (315)
415 2atx_A Small GTP binding prote 96.9 0.00048 1.7E-08 47.6 2.9 22 65-86 20-41 (194)
416 1h65_A Chloroplast outer envel 96.9 0.00053 1.8E-08 50.7 3.3 23 65-87 41-63 (270)
417 2g3y_A GTP-binding protein GEM 96.9 0.0006 2E-08 49.1 3.4 22 65-86 39-60 (211)
418 3v9p_A DTMP kinase, thymidylat 96.9 0.00051 1.7E-08 50.5 2.9 29 60-88 22-50 (227)
419 4djt_A GTP-binding nuclear pro 96.9 0.00025 8.5E-09 50.0 1.1 22 65-86 13-34 (218)
420 3umf_A Adenylate kinase; rossm 96.9 0.00056 1.9E-08 50.0 3.0 28 59-86 25-52 (217)
421 4dcu_A GTP-binding protein ENG 96.9 0.00048 1.6E-08 54.9 2.8 22 65-86 25-46 (456)
422 2x77_A ADP-ribosylation factor 96.9 0.00045 1.5E-08 47.5 2.3 22 64-85 23-44 (189)
423 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00073 2.5E-08 48.9 3.5 27 61-87 37-63 (262)
424 2ocp_A DGK, deoxyguanosine kin 96.9 0.00067 2.3E-08 49.2 3.3 25 63-87 2-26 (241)
425 4tmk_A Protein (thymidylate ki 96.9 0.00076 2.6E-08 49.0 3.5 27 62-88 2-28 (213)
426 3crm_A TRNA delta(2)-isopenten 96.9 0.00063 2.2E-08 52.7 3.3 24 64-87 6-29 (323)
427 2h92_A Cytidylate kinase; ross 96.9 0.0006 2.1E-08 48.4 2.9 24 64-87 4-27 (219)
428 1sky_E F1-ATPase, F1-ATP synth 96.9 0.00067 2.3E-08 55.1 3.5 35 52-87 141-175 (473)
429 3cpj_B GTP-binding protein YPT 96.8 0.00058 2E-08 48.6 2.7 23 65-87 15-37 (223)
430 2hup_A RAS-related protein RAB 96.8 0.00064 2.2E-08 47.7 2.9 22 65-86 31-52 (201)
431 1p5z_B DCK, deoxycytidine kina 96.8 0.00047 1.6E-08 50.7 2.2 27 61-87 22-48 (263)
432 2yc2_C IFT27, small RAB-relate 96.8 0.00027 9.1E-09 49.0 0.8 22 65-86 22-43 (208)
433 3exa_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 52.3 3.4 25 63-87 3-27 (322)
434 3cnl_A YLQF, putative uncharac 96.8 0.0008 2.7E-08 50.2 3.3 25 64-88 100-124 (262)
435 4gzl_A RAS-related C3 botulinu 96.8 0.00073 2.5E-08 47.5 2.9 21 65-85 32-52 (204)
436 3tmk_A Thymidylate kinase; pho 96.8 0.00093 3.2E-08 48.7 3.5 29 61-89 3-31 (216)
437 3q3j_B RHO-related GTP-binding 96.8 0.00078 2.7E-08 47.8 3.0 22 65-86 29-50 (214)
438 3ld9_A DTMP kinase, thymidylat 96.8 0.00098 3.4E-08 48.9 3.5 28 61-88 19-46 (223)
439 3sr0_A Adenylate kinase; phosp 96.8 0.0009 3.1E-08 48.3 3.3 22 65-86 2-23 (206)
440 2j0v_A RAC-like GTP-binding pr 96.8 0.00078 2.7E-08 47.2 2.9 22 65-86 11-32 (212)
441 2z4s_A Chromosomal replication 96.8 0.00065 2.2E-08 54.1 2.7 25 63-87 130-154 (440)
442 1ypw_A Transitional endoplasmi 96.7 0.00024 8.2E-09 60.8 0.1 32 57-88 505-536 (806)
443 2chg_A Replication factor C sm 96.7 0.001 3.4E-08 46.0 3.1 23 65-87 40-62 (226)
444 1u94_A RECA protein, recombina 96.7 0.0013 4.3E-08 51.4 3.9 28 59-86 59-86 (356)
445 1sxj_D Activator 1 41 kDa subu 96.7 0.0009 3.1E-08 50.4 2.8 36 52-87 45-82 (353)
446 2v1u_A Cell division control p 96.6 0.0009 3.1E-08 50.6 2.7 27 61-87 42-68 (387)
447 3n70_A Transport activator; si 96.6 0.0012 4.3E-08 44.3 3.2 27 61-87 22-48 (145)
448 3foz_A TRNA delta(2)-isopenten 96.6 0.0011 3.9E-08 51.2 3.3 24 64-87 11-34 (316)
449 3syl_A Protein CBBX; photosynt 96.6 0.0014 4.8E-08 48.6 3.6 26 62-87 66-91 (309)
450 3eph_A TRNA isopentenyltransfe 96.6 0.0012 4.2E-08 52.7 3.3 24 64-87 3-26 (409)
451 2hjg_A GTP-binding protein ENG 96.6 0.0011 3.6E-08 52.6 2.8 23 65-87 5-27 (436)
452 2r62_A Cell division protease 96.6 0.00054 1.9E-08 50.1 1.0 22 66-87 47-68 (268)
453 4a1f_A DNAB helicase, replicat 96.5 0.00063 2.2E-08 52.9 1.3 36 51-86 34-69 (338)
454 2orw_A Thymidine kinase; TMTK, 96.5 0.0018 6.3E-08 45.6 3.6 22 62-83 2-24 (184)
455 2q6t_A DNAB replication FORK h 96.5 0.0014 4.9E-08 52.0 3.3 36 52-87 189-224 (444)
456 2x2e_A Dynamin-1; nitration, h 96.5 0.001 3.5E-08 51.3 2.3 23 65-87 33-55 (353)
457 1d2n_A N-ethylmaleimide-sensit 96.5 0.0015 5.1E-08 48.0 3.1 26 62-87 63-88 (272)
458 3uk6_A RUVB-like 2; hexameric 96.5 0.0018 6.1E-08 49.2 3.5 28 61-88 68-95 (368)
459 3l0i_B RAS-related protein RAB 96.5 0.00031 1.1E-08 49.0 -0.7 23 65-87 35-57 (199)
460 3r7w_A Gtpase1, GTP-binding pr 96.5 0.0016 5.3E-08 49.3 3.1 23 64-86 4-26 (307)
461 1puj_A YLQF, conserved hypothe 96.5 0.0017 5.8E-08 48.9 3.3 23 65-87 122-144 (282)
462 3gj0_A GTP-binding nuclear pro 96.5 0.00088 3E-08 47.4 1.6 21 65-85 17-38 (221)
463 3p32_A Probable GTPase RV1496/ 96.5 0.0015 5.2E-08 50.4 3.0 25 63-87 79-103 (355)
464 1wxq_A GTP-binding protein; st 96.5 0.0016 5.6E-08 51.3 3.2 23 65-87 2-24 (397)
465 3tqf_A HPR(Ser) kinase; transf 96.5 0.0039 1.3E-07 44.6 4.9 33 52-85 6-38 (181)
466 3th5_A RAS-related C3 botulinu 95.5 0.00046 1.6E-08 48.2 0.0 21 65-85 32-52 (204)
467 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0022 7.4E-08 48.9 3.7 27 61-87 43-69 (322)
468 1ofh_A ATP-dependent HSL prote 96.4 0.0018 6.3E-08 47.7 3.1 25 63-87 50-74 (310)
469 3t15_A Ribulose bisphosphate c 96.4 0.002 6.9E-08 48.4 3.4 25 63-87 36-60 (293)
470 3hws_A ATP-dependent CLP prote 96.4 0.0018 6.3E-08 49.6 3.1 26 62-87 50-75 (363)
471 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0019 6.5E-08 50.3 3.1 28 58-85 118-145 (331)
472 2qby_B CDC6 homolog 3, cell di 96.4 0.0023 7.9E-08 48.6 3.6 25 63-87 45-69 (384)
473 2qgz_A Helicase loader, putati 96.4 0.0024 8.3E-08 48.5 3.6 25 63-87 152-176 (308)
474 2qpt_A EH domain-containing pr 96.4 0.0018 6.3E-08 53.1 3.1 24 64-87 66-89 (550)
475 4hlc_A DTMP kinase, thymidylat 96.4 0.0024 8.1E-08 46.0 3.3 26 63-88 2-27 (205)
476 3eie_A Vacuolar protein sortin 96.4 0.0026 9E-08 48.1 3.7 26 62-87 50-75 (322)
477 3d8b_A Fidgetin-like protein 1 96.3 0.0027 9.2E-08 48.9 3.8 27 61-87 115-141 (357)
478 3geh_A MNME, tRNA modification 96.3 0.0018 6.1E-08 52.2 2.6 24 63-86 224-247 (462)
479 3pfi_A Holliday junction ATP-d 96.3 0.0023 7.8E-08 48.2 3.1 25 64-88 56-80 (338)
480 2qen_A Walker-type ATPase; unk 96.3 0.0028 9.6E-08 47.2 3.5 24 63-86 31-54 (350)
481 1f5n_A Interferon-induced guan 96.3 0.0022 7.4E-08 53.4 3.0 24 64-87 39-62 (592)
482 1xp8_A RECA protein, recombina 96.3 0.0032 1.1E-07 49.3 3.8 27 59-85 70-96 (366)
483 3gmt_A Adenylate kinase; ssgci 96.2 0.003 1E-07 46.7 3.3 22 65-86 10-31 (230)
484 3co5_A Putative two-component 96.2 0.0017 5.8E-08 43.6 1.8 27 61-87 25-51 (143)
485 3sjy_A Translation initiation 96.2 0.0029 1E-07 49.5 3.4 23 65-87 10-32 (403)
486 3ec1_A YQEH GTPase; atnos1, at 96.2 0.0023 7.9E-08 49.9 2.8 25 62-86 161-185 (369)
487 1um8_A ATP-dependent CLP prote 96.2 0.0028 9.5E-08 48.8 3.1 25 63-87 72-96 (376)
488 2v3c_C SRP54, signal recogniti 96.2 0.0018 6.1E-08 51.8 2.1 25 64-88 100-124 (432)
489 1g8f_A Sulfate adenylyltransfe 96.2 0.0027 9.4E-08 51.9 3.1 28 61-88 393-420 (511)
490 3dm5_A SRP54, signal recogniti 96.2 0.0031 1.1E-07 50.8 3.3 27 62-88 99-125 (443)
491 1x6v_B Bifunctional 3'-phospho 96.2 0.0031 1.1E-07 52.8 3.5 26 62-87 51-76 (630)
492 1mky_A Probable GTP-binding pr 96.2 0.0032 1.1E-07 49.8 3.4 23 65-87 3-25 (439)
493 2hjg_A GTP-binding protein ENG 96.2 0.0033 1.1E-07 49.7 3.4 23 65-87 177-199 (436)
494 2j69_A Bacterial dynamin-like 96.1 0.0031 1E-07 53.1 3.4 26 62-87 68-93 (695)
495 1m8p_A Sulfate adenylyltransfe 96.1 0.0034 1.2E-07 51.9 3.5 27 62-88 395-421 (573)
496 3h2y_A GTPase family protein; 96.1 0.0024 8.4E-08 49.8 2.6 25 62-86 159-183 (368)
497 2xau_A PRE-mRNA-splicing facto 96.1 0.0019 6.4E-08 55.0 2.0 27 60-86 106-132 (773)
498 2bjv_A PSP operon transcriptio 96.1 0.0033 1.1E-07 45.9 3.0 28 61-88 27-54 (265)
499 1lnz_A SPO0B-associated GTP-bi 96.1 0.0037 1.3E-07 48.4 3.4 22 65-86 160-181 (342)
500 3gee_A MNME, tRNA modification 96.1 0.0024 8.1E-08 51.7 2.2 24 63-86 233-256 (476)
No 1
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=2.2e-20 Score=138.16 Aligned_cols=78 Identities=27% Similarity=0.302 Sum_probs=67.3
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 4 ~l~~~~l~~~y~------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 4 ILRAENIKKVIR------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHH
T ss_pred EEEEEeEEEEEC------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHH
Confidence 588899988773 256999999999999999999999999999999999999984 99999999987532
Q ss_pred ------CCceEEEEee
Q 033293 108 ------RRDIVSINLI 117 (122)
Q Consensus 108 ------~~~i~~v~~~ 117 (122)
++.++|||+-
T Consensus 75 ~~~~~~~~~i~~v~q~ 90 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQF 90 (224)
T ss_dssp HHHHHHHHHEEEECSS
T ss_pred HHHHHHhCcEEEEecC
Confidence 1459999873
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.83 E-value=2.2e-20 Score=147.75 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=70.5
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN- 107 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~- 107 (122)
...++++|+++.|.. ......+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 22 ~~mi~v~~ls~~y~~--~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 22 KHMIKLSNITKVFHQ--GTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLS 96 (366)
T ss_dssp -CCEEEEEEEEEEEC--SSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCC
T ss_pred CceEEEEeEEEEeCC--CCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCC
Confidence 457999999998853 111246999999999999999999999999999999999999984 99999999997532
Q ss_pred -------CCceEEEEee
Q 033293 108 -------RRDIVSINLI 117 (122)
Q Consensus 108 -------~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 97 ~~~~~~~r~~Ig~v~Q~ 113 (366)
T 3tui_C 97 ESELTKARRQIGMIFQH 113 (366)
T ss_dssp HHHHHHHHTTEEEECSS
T ss_pred HHHHHHHhCcEEEEeCC
Confidence 3579999873
No 3
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.83 E-value=2.7e-20 Score=138.66 Aligned_cols=81 Identities=23% Similarity=0.232 Sum_probs=67.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.|..- .....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 2 l~~~~l~~~y~~~--~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~ 76 (235)
T 3tif_A 2 VKLKNVTKTYKMG--EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDE 76 (235)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEEEEEEeCCC--CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHH
Confidence 6788999887531 11246999999999999999999999999999999999999984 99999999987542
Q ss_pred -----CCceEEEEee
Q 033293 108 -----RRDIVSINLI 117 (122)
Q Consensus 108 -----~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 77 ~~~~~~~~i~~v~Q~ 91 (235)
T 3tif_A 77 LTKIRRDKIGFVFQQ 91 (235)
T ss_dssp HHHHHHHHEEEECTT
T ss_pred HHHHhhccEEEEecC
Confidence 1259999873
No 4
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=4.1e-20 Score=137.94 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=67.7
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
+.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 5 ~~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 5 IVLEVQSLHVYYG------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred ceEEEEeEEEEEC------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCH
Confidence 3588999988773 256999999999999999999999999999999999999984 99999999987532
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 76 ~~~~~~~i~~v~q~ 89 (240)
T 1ji0_A 76 HVINRMGIALVPEG 89 (240)
T ss_dssp HHHHHTTEEEECSS
T ss_pred HHHHhCCEEEEecC
Confidence 2349999873
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.82 E-value=3e-20 Score=141.75 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.|.+ ...+|+++||+|++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 6 ~~l~i~~ls~~y~~-----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 6 YILKVEELNYNYSD-----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEEECTT-----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHH
T ss_pred cEEEEEEEEEEECC-----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccc
Confidence 36888999887631 345999999999999999999999999999999999999984 9999999998742
Q ss_pred ----CCCceEEEEee
Q 033293 107 ----NRRDIVSINLI 117 (122)
Q Consensus 107 ----~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 78 ~~~~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 78 GIMKLRESIGIVFQD 92 (275)
T ss_dssp HHHHHHHSEEEECSS
T ss_pred cHHHHhCcEEEEEcC
Confidence 13469999874
No 6
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.82 E-value=4.5e-20 Score=139.32 Aligned_cols=80 Identities=21% Similarity=0.368 Sum_probs=68.8
Q ss_pred eeeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC-
Q 033293 29 LAHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN- 107 (122)
Q Consensus 29 ~~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~- 107 (122)
+..++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 13 ~~~l~i~~l~~~y~------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83 (256)
T ss_dssp -CCEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCH
T ss_pred CCeEEEEEEEEEEC------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccH
Confidence 46789999998773 356999999999999999999999999999999999999984 99999999987532
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 84 ~~~~~~i~~v~q~ 96 (256)
T 1vpl_A 84 HEVRKLISYLPEE 96 (256)
T ss_dssp HHHHTTEEEECTT
T ss_pred HHHhhcEEEEcCC
Confidence 3469999873
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=2e-20 Score=141.84 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC--CC-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG--TN- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~--~~- 107 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++. ..
T Consensus 24 ~l~i~~l~~~y~------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 24 MIDVHQLKKSFG------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTN 94 (263)
T ss_dssp SEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCC
T ss_pred eEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCcccc
Confidence 588999998773 356999999999999999999999999999999999999984 999999999874 11
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 95 ~~~~~~~i~~v~Q~ 108 (263)
T 2olj_A 95 LNKVREEVGMVFQR 108 (263)
T ss_dssp HHHHHHHEEEECSS
T ss_pred HHHHhCcEEEEeCC
Confidence 2358999873
No 8
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.82 E-value=3.3e-20 Score=139.73 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=67.8
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 6 ~~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 6 EILRTENIVKYFG------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEEET------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCH
T ss_pred cEEEEeeeEEEEC------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCH
Confidence 3588999988773 356999999999999999999999999999999999999984 99999999987532
Q ss_pred ----CCceEEEEee
Q 033293 108 ----RRDIVSINLI 117 (122)
Q Consensus 108 ----~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 77 ~~~~~~~i~~v~q~ 90 (257)
T 1g6h_A 77 AELYHYGIVRTFQT 90 (257)
T ss_dssp HHHHHHTEEECCCC
T ss_pred HHHHhCCEEEEccC
Confidence 2358999873
No 9
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=3.1e-20 Score=137.04 Aligned_cols=78 Identities=21% Similarity=0.279 Sum_probs=67.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.+. . .+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++...++
T Consensus 9 ~~l~~~~ls~~y~------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYD------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESS------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEeC------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 5688888888652 3 7999999999999999999999999999999999999984 9999999988642345
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+|+-
T Consensus 79 ~i~~v~q~ 86 (214)
T 1sgw_A 79 KIFFLPEE 86 (214)
T ss_dssp GEEEECSS
T ss_pred cEEEEeCC
Confidence 79999873
No 10
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.82 E-value=5.8e-20 Score=140.24 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=67.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC--CC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG--TN 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~--~~ 107 (122)
+.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++. ..
T Consensus 20 ~~l~~~~l~~~y~------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 90 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90 (279)
T ss_dssp EEEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---C
T ss_pred ceEEEEeEEEEEC------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccC
Confidence 3588999988773 256999999999999999999999999999999999999984 999999998764 21
Q ss_pred -----CCceEEEEee
Q 033293 108 -----RRDIVSINLI 117 (122)
Q Consensus 108 -----~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 91 ~~~~~~~~i~~v~Q~ 105 (279)
T 2ihy_A 91 SAETVRQHIGFVSHS 105 (279)
T ss_dssp CHHHHHTTEEEECHH
T ss_pred CHHHHcCcEEEEEcC
Confidence 3569999873
No 11
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.81 E-value=3.7e-20 Score=139.95 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=59.9
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
.++++|+++.+. ...+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y~------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~ 71 (262)
T 1b0u_A 6 KLHVIDLHKRYG------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNIN 71 (262)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECC
T ss_pred eEEEeeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcc
Confidence 588999988773 356999999999999999999999999999999999999984 999999999874
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.81 E-value=6.6e-20 Score=144.67 Aligned_cols=77 Identities=26% Similarity=0.372 Sum_probs=67.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC----C-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG----G- 105 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~----~- 105 (122)
.++++|+++.|. +..+|+++||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y~------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 4 ALHIGHLSKSFQ------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCB
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccc
Confidence 588899988773 357999999999999999999999999999999999999994 99999999976 1
Q ss_pred --CCCCceEEEEe
Q 033293 106 --TNRRDIVSINL 116 (122)
Q Consensus 106 --~~~~~i~~v~~ 116 (122)
..++.++||+|
T Consensus 75 ~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 75 LPVRERRLGYLVQ 87 (359)
T ss_dssp CCGGGSCCEEECT
T ss_pred cchhhCCEEEEeC
Confidence 12467999987
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.81 E-value=1.3e-19 Score=137.37 Aligned_cols=79 Identities=29% Similarity=0.389 Sum_probs=68.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++++++.+. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 10 ~~l~~~~l~~~~~------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 10 ALLEASHLHYHVQ------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQP 80 (266)
T ss_dssp CEEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCH
T ss_pred ceEEEEeEEEEeC------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCH
Confidence 4688999988773 357999999999999999999999999999999999999984 99999999997542
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++|+++-
T Consensus 81 ~~~~~~i~~v~q~ 93 (266)
T 4g1u_C 81 KALARTRAVMRQY 93 (266)
T ss_dssp HHHHHHEEEECSC
T ss_pred HHHhheEEEEecC
Confidence 2358888763
No 14
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.81 E-value=1.1e-19 Score=136.44 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=66.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++.+. +....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 7 ~~~~~~l~~~y~----~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYK----PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESS----TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeC----CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 467777777652 11357999999999999999999999999999999999999984 99999999987532
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|||+-
T Consensus 80 ~~~~~i~~v~Q~ 91 (247)
T 2ff7_A 80 WLRRQVGVVLQD 91 (247)
T ss_dssp HHHHHEEEECSS
T ss_pred HHHhcEEEEeCC
Confidence 2458999873
No 15
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.80 E-value=1.5e-19 Score=143.64 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=67.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++|+++.|. +..+|+++||++++||+++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~yg------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 3 SVQLQNVTKAWG------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGG
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHH
Confidence 478889988773 357999999999999999999999999999999999999984 9999999998743 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
.+.++||+|
T Consensus 74 ~r~ig~VfQ 82 (381)
T 3rlf_A 74 ERGVGMVFQ 82 (381)
T ss_dssp GSCEEEECT
T ss_pred HCCEEEEec
Confidence 467999987
No 16
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.80 E-value=7.8e-20 Score=136.55 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=65.4
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT----- 106 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~----- 106 (122)
++++|+++.+. ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 l~~~~l~~~y~-----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 2 LSARHVDFAYD-----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73 (243)
T ss_dssp EEEEEEEECSS-----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSC
T ss_pred EEEEEEEEEeC-----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHH
Confidence 56778877652 1356999999999999999999999999999999999999984 9999999998632
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|+|+-
T Consensus 74 ~~~~i~~v~q~ 84 (243)
T 1mv5_A 74 WRSQIGFVSQD 84 (243)
T ss_dssp CTTTCCEECCS
T ss_pred HHhhEEEEcCC
Confidence 24568999873
No 17
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.80 E-value=1.2e-19 Score=140.28 Aligned_cols=80 Identities=21% Similarity=0.354 Sum_probs=69.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|. ....+|+++||.|++|+++||+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 52 ~~i~~~~vs~~y~-----~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYA-----DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESS-----TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcC-----CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCH
Confidence 4588899988763 2357999999999999999999999999999999999999984 99999999997542
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 124 ~~~r~~i~~v~Q~ 136 (306)
T 3nh6_A 124 ASLRSHIGVVPQD 136 (306)
T ss_dssp HHHHHTEEEECSS
T ss_pred HHHhcceEEEecC
Confidence 3469999873
No 18
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.80 E-value=2.7e-19 Score=141.10 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=67.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++|+++.|. +..+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 3 SIRVVNLKKYFG------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEEEEEEEC------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChh
Confidence 478888888763 356999999999999999999999999999999999999984 9999999998743 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 74 ~r~ig~v~Q~ 83 (359)
T 2yyz_A 74 YREVGMVFQN 83 (359)
T ss_dssp GTTEEEECSS
T ss_pred hCcEEEEecC
Confidence 4679999873
No 19
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.80 E-value=2.1e-19 Score=136.04 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=67.4
Q ss_pred eeEEeeEEEEEeeeecccc--ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAK--KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~--~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+.. +.. +.+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~---~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~ 75 (266)
T 2yz2_A 2 RIEVVNVSHIFHR---GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYE 75 (266)
T ss_dssp CEEEEEEEEEEST---TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHH
T ss_pred EEEEEEEEEEecC---CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHH
Confidence 4788898887731 011 46999999999999999999999999999999999999984 9999999998642
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++|||+-
T Consensus 76 ~~~~i~~v~q~ 86 (266)
T 2yz2_A 76 IRRNIGIAFQY 86 (266)
T ss_dssp HGGGEEEECSS
T ss_pred hhhhEEEEecc
Confidence 24569999874
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.79 E-value=3.6e-19 Score=140.90 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=67.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC----
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---- 106 (122)
.++++|+++.|. +..+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 3 GVRLVDVWKVFG------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKG 73 (372)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGT
T ss_pred EEEEEeEEEEEC------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECcccccc
Confidence 478888888763 356999999999999999999999999999999999999984 9999999987522
Q ss_pred -----CCCceEEEEee
Q 033293 107 -----NRRDIVSINLI 117 (122)
Q Consensus 107 -----~~~~i~~v~~~ 117 (122)
.++.++||+|-
T Consensus 74 ~~~~~~~r~ig~v~Q~ 89 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQS 89 (372)
T ss_dssp EECCGGGSSEEEECSC
T ss_pred ccCCHhHCCEEEEeCC
Confidence 24679999873
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.79 E-value=1.5e-19 Score=137.27 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=67.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ .....+|+++||+|++|++++|+|||||||||||++|+|+++|. +|+|.++|+++...
T Consensus 15 ~~l~~~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~ 88 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN---HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDH 88 (271)
T ss_dssp CCEEEEEEEECCTT---CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCH
T ss_pred ceEEEEEEEEEeCC---CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCH
Confidence 35888898886631 01246999999999999999999999999999999999999984 99999999986431
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 89 ~~~~~~i~~v~Q~ 101 (271)
T 2ixe_A 89 HYLHTQVAAVGQE 101 (271)
T ss_dssp HHHHHHEEEECSS
T ss_pred HHHhccEEEEecC
Confidence 2459999873
No 22
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.79 E-value=4.1e-19 Score=140.60 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=67.6
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++|+++.|. +..+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 11 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 11 EVKLENLTKRFG------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred eEEEEEEEEEEC------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChh
Confidence 488899988773 356999999999999999999999999999999999999984 9999999998743 2
Q ss_pred CCceEEEEee
Q 033293 108 RRDIVSINLI 117 (122)
Q Consensus 108 ~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 82 ~r~ig~v~Q~ 91 (372)
T 1v43_A 82 DRNISMVFQS 91 (372)
T ss_dssp GGTEEEEEC-
T ss_pred hCcEEEEecC
Confidence 4679999873
No 23
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.79 E-value=3.6e-19 Score=140.51 Aligned_cols=77 Identities=26% Similarity=0.385 Sum_probs=66.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---C
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---N 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~ 107 (122)
.++++|+++.+. ...+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 3 EIKLENIVKKFG------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CEEEEEEEEESS------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGG
T ss_pred EEEEEeEEEEEC------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHh
Confidence 477888887663 356999999999999999999999999999999999999984 9999999998743 2
Q ss_pred CCceEEEEe
Q 033293 108 RRDIVSINL 116 (122)
Q Consensus 108 ~~~i~~v~~ 116 (122)
++.++||+|
T Consensus 74 ~r~ig~v~Q 82 (362)
T 2it1_A 74 DRNVGLVFQ 82 (362)
T ss_dssp GTTEEEECT
T ss_pred HCcEEEEec
Confidence 467999987
No 24
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.79 E-value=2.8e-19 Score=140.89 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=68.0
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+. .+..+|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++..
T Consensus 13 ~~l~~~~l~~~y~-----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 13 MTIEFVGVEKIYP-----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp EEEEEEEEEECCT-----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred ceEEEEEEEEEEc-----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 5688888887651 1346999999999999999999999999999999999999984 9999999998743
Q ss_pred CCCceEEEEee
Q 033293 107 NRRDIVSINLI 117 (122)
Q Consensus 107 ~~~~i~~v~~~ 117 (122)
.++.++||+|-
T Consensus 85 ~~r~ig~v~Q~ 95 (355)
T 1z47_A 85 QKRNVGLVFQN 95 (355)
T ss_dssp GGSSEEEECGG
T ss_pred hhCcEEEEecC
Confidence 24679999873
No 25
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.79 E-value=3e-19 Score=140.48 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=66.9
Q ss_pred eeEEeeEEEEEeeeeccccce--eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--
Q 033293 31 HLVWEEVKVEAKNLRNGAKKK--LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~--il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-- 106 (122)
.++++|+++.+. +.. +|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFK------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEG------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETT
T ss_pred EEEEEeEEEEEC------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccc
Confidence 478889888773 245 999999999999999999999999999999999999984 9999999987522
Q ss_pred ------CCCceEEEEee
Q 033293 107 ------NRRDIVSINLI 117 (122)
Q Consensus 107 ------~~~~i~~v~~~ 117 (122)
.++.++||+|-
T Consensus 74 ~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 74 KLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EESSCGGGSCEEEEETT
T ss_pred cccCChhhCCEEEEeCC
Confidence 34679999873
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.78 E-value=5.5e-19 Score=131.00 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=61.1
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.. ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++| .
T Consensus 6 ~l~~~~l~~~y~~----~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~ 70 (229)
T 2pze_A 6 EVVMENVTAFWEE----GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 70 (229)
T ss_dssp EEEEEEEEECSST----TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------E
Confidence 5778888876531 1356999999999999999999999999999999999999984 99999987 3
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 71 i~~v~q 76 (229)
T 2pze_A 71 ISFCSQ 76 (229)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 788876
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.77 E-value=5.6e-19 Score=133.79 Aligned_cols=79 Identities=33% Similarity=0.429 Sum_probs=65.4
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCCccccEEEECCEECCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNVILTGSVQLNRKKGGTN 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~~~~G~i~~~g~~~~~~ 107 (122)
..++++|+++.+. ++.+|+++||+|++|++++|+||||||||||+++|+|++ +| .+|+|.++|+++...
T Consensus 19 ~~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~i~~~ 89 (267)
T 2zu0_C 19 HMLSIKDLHVSVE------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVEFKGKDLLAL 89 (267)
T ss_dssp -CEEEEEEEEEET------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEEGGGS
T ss_pred ceEEEEeEEEEEC------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEEECCEECCcC
Confidence 4588999998773 357999999999999999999999999999999999984 45 489999999986431
Q ss_pred ------CCceEEEEee
Q 033293 108 ------RRDIVSINLI 117 (122)
Q Consensus 108 ------~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 90 ~~~~~~~~~i~~v~Q~ 105 (267)
T 2zu0_C 90 SPEDRAGEGIFMAFQY 105 (267)
T ss_dssp CHHHHHHHTEEEECSS
T ss_pred CHHHHhhCCEEEEccC
Confidence 1248898763
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.77 E-value=5.2e-19 Score=132.68 Aligned_cols=77 Identities=23% Similarity=0.332 Sum_probs=64.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC--cCCCCccccEEEECCEECCCC-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR--LSKNVILTGSVQLNRKKGGTN- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl--~~~~~~~~G~i~~~g~~~~~~- 107 (122)
.++++|+++.+. +..+|+++||++++|++++|+||||||||||+++|+|+ ++| .+|+|.++|+++...
T Consensus 3 ~l~~~~l~~~y~------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASID------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEEC------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCC
Confidence 478889988773 25699999999999999999999999999999999998 566 499999999987432
Q ss_pred -----CCceEEEEe
Q 033293 108 -----RRDIVSINL 116 (122)
Q Consensus 108 -----~~~i~~v~~ 116 (122)
+..++|+||
T Consensus 74 ~~~~~~~~i~~v~q 87 (250)
T 2d2e_A 74 PDERARKGLFLAFQ 87 (250)
T ss_dssp HHHHHHTTBCCCCC
T ss_pred HHHHHhCcEEEecc
Confidence 123677765
No 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=131.09 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=61.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.+ .+..+|+++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++| .
T Consensus 3 ~l~~~~l~~~y~~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g--------~ 67 (237)
T 2cbz_A 3 SITVRNATFTWAR----SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG--------S 67 (237)
T ss_dssp CEEEEEEEEESCT----TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS--------C
T ss_pred eEEEEEEEEEeCC----CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC--------E
Confidence 4788888887631 125699999999999999999999999999999999999988 499999998 3
Q ss_pred eEEEEe
Q 033293 111 IVSINL 116 (122)
Q Consensus 111 i~~v~~ 116 (122)
++|+|+
T Consensus 68 i~~v~Q 73 (237)
T 2cbz_A 68 VAYVPQ 73 (237)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 788876
No 30
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.77 E-value=3.9e-19 Score=139.62 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=64.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++|+++.|. +. +|+++||++++|++++|+|||||||||||++|+|+++|. +|+|.++|+++.. .+
T Consensus 2 l~~~~l~~~y~------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 2 IEIESLSRKWK------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp EEEEEEEEECS------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHH
T ss_pred EEEEEEEEEEC------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhh
Confidence 67788887653 24 999999999999999999999999999999999999984 9999999998743 23
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
+.++||+|
T Consensus 72 r~ig~v~Q 79 (348)
T 3d31_A 72 HDIAFVYQ 79 (348)
T ss_dssp HTCEEECT
T ss_pred CcEEEEec
Confidence 56999987
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.77 E-value=7.1e-19 Score=132.79 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=66.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ .....+|+++||++++|++++|+||||||||||+++|+|++++ +|+|.++|+++...
T Consensus 16 ~~l~i~~l~~~y~~---~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK---QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CCEEEEEEEECCTT---CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCH
T ss_pred CeEEEEEEEEEeCC---CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCH
Confidence 45888898887632 0013599999999999999999999999999999999999875 79999999986421
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 89 ~~~~~~i~~v~Q~ 101 (260)
T 2ghi_A 89 NSIRSIIGIVPQD 101 (260)
T ss_dssp HHHHTTEEEECSS
T ss_pred HHHhccEEEEcCC
Confidence 3569999873
No 32
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.76 E-value=1.5e-18 Score=129.89 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=62.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---CC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT---NR 108 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~---~~ 108 (122)
++++|+++.+. . +|+++||++++ ++++|+||||||||||+++|+|+++|. +|+|.++|+++.. .+
T Consensus 2 l~~~~l~~~y~-------~-~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 2 FLKVRAEKRLG-------N-FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPER 69 (240)
T ss_dssp CEEEEEEEEET-------T-EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTT
T ss_pred EEEEEEEEEeC-------C-EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhh
Confidence 57788887662 2 59999999999 999999999999999999999999984 9999999998642 34
Q ss_pred CceEEEEe
Q 033293 109 RDIVSINL 116 (122)
Q Consensus 109 ~~i~~v~~ 116 (122)
+.++|+|+
T Consensus 70 ~~i~~v~q 77 (240)
T 2onk_A 70 RGIGFVPQ 77 (240)
T ss_dssp SCCBCCCS
T ss_pred CcEEEEcC
Confidence 56889876
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.76 E-value=2e-18 Score=130.85 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=64.5
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRR 109 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~ 109 (122)
++++|+++.+.+- ...+.+|+++||+++ |++++|+|||||||||||++|+|++ |. +|+|.++|+++.. .++
T Consensus 2 l~~~~l~~~y~~~--~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~ 74 (263)
T 2pjz_A 2 IQLKNVGITLSGK--GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYI 74 (263)
T ss_dssp EEEEEEEEEEEEE--TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCT
T ss_pred EEEEEEEEEeCCC--CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhh
Confidence 6788888877420 001469999999999 9999999999999999999999999 84 9999999987531 245
Q ss_pred ceE-EEEee
Q 033293 110 DIV-SINLI 117 (122)
Q Consensus 110 ~i~-~v~~~ 117 (122)
.++ |+|+-
T Consensus 75 ~i~~~v~Q~ 83 (263)
T 2pjz_A 75 RYSTNLPEA 83 (263)
T ss_dssp TEEECCGGG
T ss_pred heEEEeCCC
Confidence 788 88763
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.75 E-value=4.9e-18 Score=127.81 Aligned_cols=71 Identities=27% Similarity=0.327 Sum_probs=60.7
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRD 110 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~ 110 (122)
.++++|+++.+.. +..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.+ ++.
T Consensus 4 ~l~i~~l~~~y~~-----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~ 67 (253)
T 2nq2_C 4 ALSVENLGFYYQA-----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQS 67 (253)
T ss_dssp EEEEEEEEEEETT-----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSC
T ss_pred eEEEeeEEEEeCC-----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------ecc
Confidence 4788898887631 257999999999999999999999999999999999999984 999983 346
Q ss_pred eEEEEee
Q 033293 111 IVSINLI 117 (122)
Q Consensus 111 i~~v~~~ 117 (122)
++|+|+-
T Consensus 68 i~~v~q~ 74 (253)
T 2nq2_C 68 IGFVPQF 74 (253)
T ss_dssp EEEECSC
T ss_pred EEEEcCC
Confidence 8898873
No 35
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.74 E-value=2.6e-18 Score=129.21 Aligned_cols=73 Identities=26% Similarity=0.366 Sum_probs=61.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC---
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN--- 107 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~--- 107 (122)
.++++|+++. .+|+++||++++|++++|+||||||||||+++|+|+++| . |+|.++|+++...
T Consensus 4 ~l~~~~l~~~----------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET----------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE----------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHH
Confidence 3666666652 589999999999999999999999999999999999988 6 9999999986421
Q ss_pred --CCceEEEEee
Q 033293 108 --RRDIVSINLI 117 (122)
Q Consensus 108 --~~~i~~v~~~ 117 (122)
++.++|+|+-
T Consensus 70 ~~~~~i~~v~q~ 81 (249)
T 2qi9_C 70 KLALHRAYLSQQ 81 (249)
T ss_dssp HHHHHEEEECSC
T ss_pred HHhceEEEECCC
Confidence 2458999873
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=136.55 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=67.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|.. ....+|+++||+|++|++++|+|||||||||||++|+|+++ . +|+|.++|+++...
T Consensus 18 ~~i~~~~l~~~y~~----~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE----GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSS----SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecC----CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCCh
Confidence 45889999987731 23569999999999999999999999999999999999986 3 89999999987532
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||+|-
T Consensus 90 ~~~rr~ig~v~Q~ 102 (390)
T 3gd7_A 90 EQWRKAFGVIPQK 102 (390)
T ss_dssp HHHHHTEEEESCC
T ss_pred HHHhCCEEEEcCC
Confidence 3579999874
No 37
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.71 E-value=1.2e-17 Score=137.76 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ ....+|+++||++++|+++||+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 338 ~~i~~~~v~~~y~~----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 410 (578)
T 4a82_A 338 GRIDIDHVSFQYND----NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLT 410 (578)
T ss_dssp CCEEEEEEEECSCS----SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEcCC----CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCH
Confidence 45888888887642 1346999999999999999999999999999999999999984 99999999987532
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 411 ~~~r~~i~~v~Q~ 423 (578)
T 4a82_A 411 GSLRNQIGLVQQD 423 (578)
T ss_dssp HHHHHTEEEECSS
T ss_pred HHHhhheEEEeCC
Confidence 3469999873
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.71 E-value=2.1e-17 Score=136.40 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=68.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC---
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--- 106 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--- 106 (122)
..++++|+++.+.+ ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++..
T Consensus 340 ~~i~~~~v~~~y~~----~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG----KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCC----CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCH
Confidence 35888999887742 1256999999999999999999999999999999999999984 9999999998643
Q ss_pred --CCCceEEEEee
Q 033293 107 --NRRDIVSINLI 117 (122)
Q Consensus 107 --~~~~i~~v~~~ 117 (122)
.++.++||||-
T Consensus 413 ~~~~~~i~~v~Q~ 425 (582)
T 3b5x_A 413 TNLRRHFALVSQN 425 (582)
T ss_pred HHHhcCeEEEcCC
Confidence 24579999873
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.71 E-value=1.8e-17 Score=137.05 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=67.8
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC----
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN---- 107 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~---- 107 (122)
++++|+++.+.+ ..+..+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 342 i~~~~v~~~y~~---~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPA---RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSS---CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCC---CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHH
Confidence 889999987742 11246999999999999999999999999999999999999984 99999999997542
Q ss_pred -CCceEEEEee
Q 033293 108 -RRDIVSINLI 117 (122)
Q Consensus 108 -~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 416 ~~~~i~~v~Q~ 426 (595)
T 2yl4_A 416 LRSKIGTVSQE 426 (595)
T ss_dssp HHHSEEEECSS
T ss_pred HHhceEEEccC
Confidence 3469999873
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.71 E-value=1.8e-17 Score=136.81 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=68.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ ....+|+++||++++|++++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 340 ~~i~~~~v~~~y~~----~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 340 GDLEFRNVTFTYPG----REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTL 412 (582)
T ss_dssp CCEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCH
T ss_pred CcEEEEEEEEEcCC----CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCH
Confidence 35888888886631 1256999999999999999999999999999999999999984 99999999997542
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 413 ~~~~~~i~~v~Q~ 425 (582)
T 3b60_A 413 ASLRNQVALVSQN 425 (582)
T ss_dssp HHHHHTEEEECSS
T ss_pred HHHHhhCeEEccC
Confidence 3469999873
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=1.6e-17 Score=137.49 Aligned_cols=80 Identities=23% Similarity=0.416 Sum_probs=68.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+.+ ....+|+++||++++||+++|+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 340 ~~i~~~~v~~~y~~----~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~ 412 (587)
T 3qf4_A 340 GSVSFENVEFRYFE----NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKL 412 (587)
T ss_dssp CCEEEEEEEECSSS----SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCH
T ss_pred CcEEEEEEEEEcCC----CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCH
Confidence 46888888887642 2356999999999999999999999999999999999999984 99999999986432
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++||||
T Consensus 413 ~~~r~~i~~v~Q 424 (587)
T 3qf4_A 413 KDLRGHISAVPQ 424 (587)
T ss_dssp HHHHHHEEEECS
T ss_pred HHHHhheEEECC
Confidence 356999987
No 42
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=1.9e-17 Score=127.00 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=51.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++. ...+|+++||+|++|++++|+||||||||||+++|+|+++| .+|+|.++|
T Consensus 39 ~~l~~~~l~~~--------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g-------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLL--------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG-------- 99 (290)
T ss_dssp -------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS--------
T ss_pred ceEEEEEEEEc--------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC--------
Confidence 34667776652 24699999999999999999999999999999999999988 499999987
Q ss_pred ceEEEEe
Q 033293 110 DIVSINL 116 (122)
Q Consensus 110 ~i~~v~~ 116 (122)
.++|+|+
T Consensus 100 ~i~~v~Q 106 (290)
T 2bbs_A 100 RISFCSQ 106 (290)
T ss_dssp CEEEECS
T ss_pred EEEEEeC
Confidence 3788876
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=2.3e-17 Score=136.66 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=67.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.+. .+..+|+++||++++|+++||+||||||||||+++|+|+++|. +|+|.++|+++...
T Consensus 353 ~~i~~~~v~~~y~-----~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYD-----KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECCSS-----SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEECC-----CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCH
Confidence 3578888877653 2356999999999999999999999999999999999999984 99999999987532
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++||||
T Consensus 425 ~~~r~~i~~v~Q 436 (598)
T 3qf4_B 425 SSLRSSIGIVLQ 436 (598)
T ss_dssp HHHHHHEEEECT
T ss_pred HHHHhceEEEeC
Confidence 346999987
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.68 E-value=6.6e-17 Score=143.80 Aligned_cols=81 Identities=22% Similarity=0.411 Sum_probs=70.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|.+ +.+..+|+++||+|++||.+||+|+||||||||+++|.|++.|. +|+|.+||.++..-
T Consensus 1075 g~I~f~nVsf~Y~~---~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~ 1148 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPE---RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNP 1148 (1321)
T ss_dssp CCEEEEEEEECCTT---SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCH
T ss_pred CeEEEEEEEEeCCC---CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCH
Confidence 46899999987742 12346999999999999999999999999999999999999994 99999999998652
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.+++|||
T Consensus 1149 ~~lR~~i~~V~Q 1160 (1321)
T 4f4c_A 1149 EHTRSQIAIVSQ 1160 (1321)
T ss_dssp HHHHTTEEEECS
T ss_pred HHHHhheEEECC
Confidence 567999987
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.62 E-value=1.1e-15 Score=136.00 Aligned_cols=82 Identities=17% Similarity=0.300 Sum_probs=70.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|.. ..+..+|+|+||++++|+.+||+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 414 g~I~~~nvsF~Y~~---~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~ 487 (1321)
T 4f4c_A 414 GDITVENVHFTYPS---RPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINL 487 (1321)
T ss_dssp CCEEEEEEEECCSS---STTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCH
T ss_pred CcEEEEEeeeeCCC---CCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccH
Confidence 46889999987752 12457999999999999999999999999999999999999994 99999999998653
Q ss_pred ---CCceEEEEee
Q 033293 108 ---RRDIVSINLI 117 (122)
Q Consensus 108 ---~~~i~~v~~~ 117 (122)
++.++||||-
T Consensus 488 ~~lr~~i~~v~Q~ 500 (1321)
T 4f4c_A 488 EFLRKNVAVVSQE 500 (1321)
T ss_dssp HHHHHHEEEECSS
T ss_pred HHHhhcccccCCc
Confidence 3469999873
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.60 E-value=8.3e-16 Score=136.49 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=68.3
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|.. .....+|+++||++++|+++||+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~---~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~ 459 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS---RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINV 459 (1284)
T ss_dssp CCEEEEEEEECCSS---TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEEcCC---CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCH
Confidence 45888998887642 11246999999999999999999999999999999999999984 99999999987432
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++||||
T Consensus 460 ~~~r~~i~~v~Q 471 (1284)
T 3g5u_A 460 RYLREIIGVVSQ 471 (1284)
T ss_dssp HHHHHHEEEECS
T ss_pred HHHHhheEEEcC
Confidence 345999987
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.59 E-value=9.4e-16 Score=136.15 Aligned_cols=81 Identities=22% Similarity=0.296 Sum_probs=68.6
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCC--
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTN-- 107 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~-- 107 (122)
..++++|+++.|.+ .....+|+++||++++||++||+||||||||||+++|+|+++|. +|+|.++|.++...
T Consensus 1029 g~i~~~~v~~~y~~---~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~ 1102 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT---RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNV 1102 (1284)
T ss_dssp CCEEEEEEEBCCSC---GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCH
T ss_pred CcEEEEEEEEECCC---CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCH
Confidence 45888888887642 11236999999999999999999999999999999999999984 99999999987542
Q ss_pred ---CCceEEEEe
Q 033293 108 ---RRDIVSINL 116 (122)
Q Consensus 108 ---~~~i~~v~~ 116 (122)
++.++||||
T Consensus 1103 ~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1103 QWLRAQLGIVSQ 1114 (1284)
T ss_dssp HHHTTSCEEEES
T ss_pred HHHHhceEEECC
Confidence 467999987
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.56 E-value=4.5e-15 Score=129.03 Aligned_cols=75 Identities=25% Similarity=0.365 Sum_probs=62.2
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++|+++.|.+ ..+.+|+++||++.+|++++|+||||||||||+++|+|+++|. +|+|.+++. .
T Consensus 670 ~mL~v~nLs~~Y~g----~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~ 736 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG----TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------C 736 (986)
T ss_dssp EEEEEEEEEECCTT----CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------C
T ss_pred ceEEEEeeEEEeCC----CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------c
Confidence 45888888776521 1246899999999999999999999999999999999999984 999999752 2
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|++|-
T Consensus 737 ~I~yv~Q~ 744 (986)
T 2iw3_A 737 RIAYIKQH 744 (986)
T ss_dssp CEEEECHH
T ss_pred ceEeeccc
Confidence 58888763
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.51 E-value=2.1e-14 Score=119.60 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=57.9
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+. ...|+.++|++.+||+++|+||||||||||+++|+|+++|. +|+|.+ ..
T Consensus 356 ~~l~~~~l~~~~~-------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~--------~~ 417 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW--------DL 417 (607)
T ss_dssp EEEEECCEEEECS-------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC--------CC
T ss_pred eEEEEeceEEEec-------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE--------ee
Confidence 4577777766542 24689999999999999999999999999999999999984 899876 24
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+||-
T Consensus 418 ~i~~v~Q~ 425 (607)
T 3bk7_A 418 TVAYKPQY 425 (607)
T ss_dssp CEEEECSS
T ss_pred EEEEEecC
Confidence 68998874
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.50 E-value=2.3e-14 Score=117.75 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=58.1
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..++++++++.+. ...|+.++|.+++||+++|+||||||||||+++|+|+++|. +|+|.+ ..
T Consensus 286 ~~l~~~~l~~~~~-------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~--------~~ 347 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW--------DL 347 (538)
T ss_dssp EEEEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC--------CC
T ss_pred eEEEEeeEEEEEC-------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE--------Cc
Confidence 4577777776552 24689999999999999999999999999999999999984 899875 23
Q ss_pred ceEEEEee
Q 033293 110 DIVSINLI 117 (122)
Q Consensus 110 ~i~~v~~~ 117 (122)
.++|+||-
T Consensus 348 ~i~~v~Q~ 355 (538)
T 1yqt_A 348 TVAYKPQY 355 (538)
T ss_dssp CEEEECSS
T ss_pred eEEEEecC
Confidence 68888873
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.48 E-value=6.8e-14 Score=115.10 Aligned_cols=70 Identities=23% Similarity=0.400 Sum_probs=56.5
Q ss_pred eeeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCC
Q 033293 30 AHLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRR 109 (122)
Q Consensus 30 ~~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~ 109 (122)
..+++++++..+. ...+..++|++++||+++|+||||||||||+++|+|+++|. +|+|.+++.
T Consensus 268 ~~l~~~~l~~~~~-------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~~------- 330 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQ------- 330 (538)
T ss_dssp EEEEECCEEEEET-------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSCC-------
T ss_pred ceEEEcceEEEEC-------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCe-------
Confidence 3566666665542 34678889999999999999999999999999999999984 999987543
Q ss_pred ceEEEEe
Q 033293 110 DIVSINL 116 (122)
Q Consensus 110 ~i~~v~~ 116 (122)
.++|+|+
T Consensus 331 ~i~~~~q 337 (538)
T 3ozx_A 331 ILSYKPQ 337 (538)
T ss_dssp CEEEECS
T ss_pred eeEeech
Confidence 4677765
No 52
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.46 E-value=2.7e-15 Score=105.81 Aligned_cols=51 Identities=20% Similarity=0.141 Sum_probs=46.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+++++||.+++|++++|+||||||||||+++|+|++ |. +|+|.++|.++
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i 70 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTL 70 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTC
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEee
Confidence 45889999999999999999999999999999999998 73 89999988654
No 53
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.44 E-value=1.5e-14 Score=105.87 Aligned_cols=46 Identities=24% Similarity=0.219 Sum_probs=30.9
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.-|+++||.+++|++++|+||||||||||+++|+|++ | |.|.+ |.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~ 56 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVS 56 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCC
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eec
Confidence 4689999999999999999999999999999999987 3 66777 543
No 54
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.33 E-value=2.8e-13 Score=110.33 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=47.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..+|++++|.+++ ++++|+|||||||||||++|+|+++|. +|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEcc
Confidence 3579999999999 999999999999999999999999984 899999997653
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.31 E-value=8.2e-13 Score=108.53 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=39.7
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i 97 (122)
.+++++| .+++||+++|+||||||||||+++|+|+++|. +|++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~ 78 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGD 78 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTT
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcc
Confidence 4899999 99999999999999999999999999999884 7774
No 56
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=6.2e-13 Score=110.77 Aligned_cols=43 Identities=30% Similarity=0.494 Sum_probs=39.8
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i 97 (122)
.+++++| .+++|++++|+|||||||||||++|+|+++|. +|++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~ 148 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCED 148 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTT
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC---CCcc
Confidence 4899999 99999999999999999999999999999884 7774
No 57
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.28 E-value=6.3e-14 Score=102.64 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=44.1
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC--EECCCCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR--KKGGTNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g--~~~~~~~~~i~~v~~ 116 (122)
+.+|+++ ++|++++|+||||||||||+++|+|+ +| .+|+|.... .+....++.++|+|+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I~~~~~~~~~~~~~~~ig~v~q 73 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQVSRIILTRPAVEAGEKLGFLPG 73 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSCSEEEEEECSCCTTCCCCSSCC
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC---cCCeeeeEEecCCchhhhcceEEecC
Confidence 4578885 89999999999999999999999999 87 478774211 111123456888876
No 58
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.1e-13 Score=110.36 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc-E-EEECC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG-S-VQLNR 101 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G-~-i~~~g 101 (122)
.+++|.+++|++++|+||||||||||+|+|+|+..+ .+| + |.++|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p---~~G~~pI~vdg 175 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK---FNAYQPLYINL 175 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH---HHCCCCEEEEC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc---cCCceeEEEcC
Confidence 478899999999999999999999999999999987 489 8 99987
No 59
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.26 E-value=1e-12 Score=94.77 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=26.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++++ ..+++|++++|+||||||||||+++|+|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46777 6899999999999999999999999999985
No 60
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.26 E-value=3.7e-13 Score=107.77 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=46.0
Q ss_pred ceeEeeceEEEcCCc--------------------EEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDR--------------------IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~--------------------~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+++++++.+++|+ ++||+||||||||||+++|+|+.+|. +|+|.++|.+.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~ 107 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEV 107 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeec
Confidence 468999999999999 99999999999999999999999884 89999988764
No 61
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.24 E-value=6.3e-13 Score=102.22 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=44.3
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
.+++|.+++|++++|+||||||||||++.|+|++.+. .|+|.+.|.+..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~ 139 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTF 139 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCS
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeeccc
Confidence 5788999999999999999999999999999999874 899999987753
No 62
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.24 E-value=1.3e-12 Score=102.41 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=49.9
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC-CC--CCCceEEEE
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG-GT--NRRDIVSIN 115 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~-~~--~~~~i~~v~ 115 (122)
++++++.+++|++++|+||||||||||+++|+|++++. +|.|.++|..- .. .+..+++++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~ 227 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFY 227 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEEC
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEee
Confidence 38999999999999999999999999999999999884 89999987531 11 234567775
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.24 E-value=8.9e-12 Score=103.87 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=45.6
Q ss_pred ceeEeeceEEEcCC-----cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPD-----RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g-----~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
..++++++|++.+| |+++|+||||||||||+++|+|+++|. +|+. + ....++|+|+
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~--~~~~i~~~~q 420 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I--PKLNVSMKPQ 420 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C--CSCCEEEECS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c--cCCcEEEecc
Confidence 35788999999888 789999999999999999999999984 7752 1 2335777776
No 64
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.23 E-value=1.1e-12 Score=101.83 Aligned_cols=49 Identities=16% Similarity=0.318 Sum_probs=45.9
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+++++++.+++|++++|+||||||||||+++|+|+++|. +|.|.++|.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~ 208 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee
Confidence 688999999999999999999999999999999999884 8999999865
No 65
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.23 E-value=7.5e-13 Score=106.51 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=60.2
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE---ECCC-
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK---KGGT- 106 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~---~~~~- 106 (122)
.+++++++..+. .+..+|+++ |.+.+|++++|+||||||||||+++|+|+..+. .|.|.++|+ ++..
T Consensus 131 ~l~~~~v~~~~~-----tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 131 PLQRTPIEHVLD-----TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDF 201 (438)
T ss_dssp TTTSCCCCSBCC-----CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred ceEEeccceecC-----CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHH
Confidence 355555554432 135699999 999999999999999999999999999999884 899999987 3211
Q ss_pred ---------CCCceEEEEee
Q 033293 107 ---------NRRDIVSINLI 117 (122)
Q Consensus 107 ---------~~~~i~~v~~~ 117 (122)
..+.++|+++.
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECT
T ss_pred HHhhccccccCceEEEEECC
Confidence 23457888873
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.21 E-value=4.6e-13 Score=103.50 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=46.3
Q ss_pred eEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC
Q 033293 32 LVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN 100 (122)
Q Consensus 32 l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~ 100 (122)
++++++++.+ ...+|++++|.|++|++++|+||||||||||+++|+|++ +|+|...
T Consensus 102 i~~~~vs~~y-------~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~~~ 157 (305)
T 2v9p_A 102 FNYQNIELIT-------FINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVLSF 157 (305)
T ss_dssp HHHTTCCHHH-------HHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEECG
T ss_pred EEEEEEEEEc-------ChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEEEE
Confidence 5555665543 245899999999999999999999999999999999987 5777654
No 67
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.20 E-value=1.3e-12 Score=102.29 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=52.5
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.++.++++..+. .+.++++++ |.+.+|++++|+||||||||||+++|+|+..+. .|.+.+.|++
T Consensus 45 ~i~~~~l~~~~~-----tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFI-----LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGER 108 (347)
T ss_dssp STTCCCCCSEEC-----CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCC
T ss_pred CeeecccceecC-----CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEeccc
Confidence 355566655442 135689999 999999999999999999999999999999884 7888887754
No 68
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.20 E-value=4e-12 Score=93.95 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=26.1
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+|+++||++++|+++||+||||||||||+++|+|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456999999999999999999999999999999999975
No 69
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.19 E-value=1.4e-12 Score=98.30 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=44.5
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
.+|++++ +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.++.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE 65 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce
Confidence 4788898 8999999999999999999999999998761 2799999887653
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.19 E-value=7.3e-12 Score=104.39 Aligned_cols=44 Identities=32% Similarity=0.559 Sum_probs=38.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i 97 (122)
...+++++ .+++|++++|+|||||||||||++|+|+++|. +|+|
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~---~G~i 134 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN---LGRF 134 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTT
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC---CceE
Confidence 34667766 58999999999999999999999999999985 7876
No 71
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.18 E-value=4.9e-12 Score=93.11 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=42.6
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-CCCceEEEEe
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-NRRDIVSINL 116 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-~~~~i~~v~~ 116 (122)
.-..++|++++|+||||||||||+++|+|+.+|. ...|.|.+.+++... ....++|+++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq 69 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFV 69 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEEC
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEEC
Confidence 3457899999999999999999999999998752 257888887765432 2334677776
No 72
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.17 E-value=6.1e-11 Score=103.30 Aligned_cols=49 Identities=35% Similarity=0.398 Sum_probs=41.8
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.+...++++.|. ++.+|+++||.+++|++++|+|||||||||||++|+|
T Consensus 435 ~L~~~~ls~~yg------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYG------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEET------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEEC------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 455557777653 3579999999999999999999999999999999994
No 73
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.17 E-value=1.6e-11 Score=102.69 Aligned_cols=54 Identities=22% Similarity=0.336 Sum_probs=37.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHH---------------------HHHhcCcCCCCc----cccEEEECCEE
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLL---------------------DALAGRLSKNVI----LTGSVQLNRKK 103 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl---------------------~~L~gl~~~~~~----~~G~i~~~g~~ 103 (122)
..+|++|||+|++|++++|+||||||||||+ ++++++..|... ..+.+.+++..
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 4689999999999999999999999999998 888888776411 14566676654
No 74
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.16 E-value=2.8e-12 Score=100.98 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=44.1
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
..++|.+++|++++|+||||||||||++.|+|++.+. .|+|.+.+.+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~ 196 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTF 196 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEeccccc
Confidence 4688899999999999999999999999999999874 899999988753
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.16 E-value=1.3e-11 Score=86.81 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=26.3
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHH
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLD 81 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~ 81 (122)
++||.+++|++++|+||||||||||++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHH
Confidence 589999999999999999999999999
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=92.66 Aligned_cols=49 Identities=24% Similarity=0.221 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC--CCCceEEEEe
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT--NRRDIVSINL 116 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~--~~~~i~~v~~ 116 (122)
.++|+||||||||||+++|+|+..|. +|+|.++|+++.. ..+.++|+++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q 54 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIE 54 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEee
Confidence 47999999999999999999999884 8999999987643 2355777765
No 77
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.12 E-value=4.8e-12 Score=103.47 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=43.8
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++++|.+.+|++++|+|+||||||||+++|+|++.+. .|+|.+.+.+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcc
Confidence 36889999999999999999999999999999998874 89999976654
No 78
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.11 E-value=5.4e-12 Score=102.87 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=47.1
Q ss_pred cceeEeeceE-EEcCCcEEEEEcCCCCcHHHHHHH--HhcCcCCCCccccEEEECCEE
Q 033293 49 KKKLINGLTG-YAQPDRIMAIMGPSGSGKSTLLDA--LAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 49 ~~~il~~is~-~i~~g~~~~IiG~nGsGKSTLl~~--L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+..+|+++++ .+++|++++|+||||||||||+++ ++|+.+|. +|.|+++|.+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~ 78 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEE 78 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSS
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeC
Confidence 4568999999 999999999999999999999999 78998864 8999998875
No 79
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.11 E-value=2.2e-11 Score=88.88 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=22.9
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh-cCcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA-GRLS 88 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~-gl~~ 88 (122)
.+..+++||.+++|++++|+||||||||||+++|+ ++++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34678999999999999999999999999999999 9873
No 80
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.11 E-value=3.5e-12 Score=94.78 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=39.9
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-------------CCCceEEEEee
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-------------NRRDIVSINLI 117 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-------------~~~~i~~v~~~ 117 (122)
++.+.+ ++++|+|||||||||||++|+|++.|. +|.|.++|.++.. .+..++|+++.
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999885 8999999876511 13468888864
No 81
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.09 E-value=4.1e-11 Score=100.17 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=32.2
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
..+|+++||+|++|++++|+||||||||||+++|+
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 45899999999999999999999999999998754
No 82
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=5e-11 Score=91.10 Aligned_cols=56 Identities=23% Similarity=0.160 Sum_probs=35.6
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE---CCEECCCCC-----CceEEEEe
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL---NRKKGGTNR-----RDIVSINL 116 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~---~g~~~~~~~-----~~i~~v~~ 116 (122)
|.+..|++++|+||||||||||+++|+|+..|. +|+|.+ +|+.+.... +.++||++
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q 227 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 227 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEES
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEE
Confidence 345679999999999999999999999999884 899999 887754321 23566654
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.07 E-value=2.2e-11 Score=100.19 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=32.3
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV 97 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i 97 (122)
.++|+++||+||||||||||+++|+|+++|. +|+|
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~---~G~i 56 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPN---FGDP 56 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCC---TTCT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCcc
Confidence 4689999999999999999999999999985 7887
No 84
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.05 E-value=4e-11 Score=94.08 Aligned_cols=37 Identities=32% Similarity=0.348 Sum_probs=34.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++++++|.+.+| +++|+|||||||||||++|.++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999 999999999999999999977664
No 85
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.05 E-value=7.4e-11 Score=83.80 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.5
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
|+.+.+|++++|+||||||||||+++|+|+.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56778999999999999999999999999863
No 86
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.04 E-value=1.7e-10 Score=81.23 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=34.5
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.+++|++++|+||||||||||+++|+++ + ..|.|.+++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~---~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--P---GVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--S---SSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--c---CCCeEEEcccc
Confidence 4788999999999999999999999998 3 27889998754
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.04 E-value=6.3e-11 Score=91.18 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+|++++|+||||||||||+++|+|++.|. .|+|.+.|.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCC
Confidence 68999999999999999999999999884 899999998753
No 88
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.04 E-value=1.3e-11 Score=96.01 Aligned_cols=52 Identities=27% Similarity=0.308 Sum_probs=47.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+++++++.+.+|++++|+|+||||||||+++|+|++.+. .|+|.+.+.+.
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~ 93 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDP 93 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcC
Confidence 46899999999999999999999999999999999998773 89999988764
No 89
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.03 E-value=3.8e-11 Score=86.62 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=40.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC---CCCCceEEEEee
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG---TNRRDIVSINLI 117 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~---~~~~~i~~v~~~ 117 (122)
|++++|+||||||||||+++|+|+++ . +| |.++|.... ...+.++|+++-
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEe
Confidence 68899999999999999999999987 4 67 877776542 235667888764
No 90
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.01 E-value=2.8e-11 Score=92.69 Aligned_cols=50 Identities=30% Similarity=0.271 Sum_probs=43.9
Q ss_pred eeEeeceEEE-------------------cCCcEEEEEcCCCCcHHHHHHHHhcCcC--CCCccccEEEE---CCEE
Q 033293 51 KLINGLTGYA-------------------QPDRIMAIMGPSGSGKSTLLDALAGRLS--KNVILTGSVQL---NRKK 103 (122)
Q Consensus 51 ~il~~is~~i-------------------~~g~~~~IiG~nGsGKSTLl~~L~gl~~--~~~~~~G~i~~---~g~~ 103 (122)
.+++++++.+ .+|+++||+||||||||||+++|+|++. |. +|+|.+ +|..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFL 122 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGB
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCcc
Confidence 5778888877 8999999999999999999999999887 63 899998 7754
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.99 E-value=2.4e-10 Score=82.10 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=35.1
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCC----ccccEEEECCEE
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNV----ILTGSVQLNRKK 103 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~----~~~G~i~~~g~~ 103 (122)
.-+++|++++|+||||||||||+++|+|+..+.. ...+.+++++..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4689999999999999999999999999544310 023467776643
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.97 E-value=1.4e-10 Score=89.49 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=28.8
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+++|+++||+||||||||||+++|+|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 789999999999999999999999999877
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.96 E-value=2.1e-10 Score=83.40 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=33.0
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHh--cCcCCCCccccEEEECCE
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALA--GRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~--gl~~~~~~~~G~i~~~g~ 102 (122)
.+++|++++|+||||||||||+++|+ ++..+. .+.+.+.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~ 68 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEcc
Confidence 78999999999999999999999999 663332 555666543
No 94
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.95 E-value=1.3e-10 Score=83.72 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=36.2
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.++|++++|+||||||||||+++|+|++.+.....|.|.++|...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 578999999999999999999999999874111367888777543
No 95
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.93 E-value=6.1e-10 Score=87.71 Aligned_cols=60 Identities=30% Similarity=0.300 Sum_probs=38.2
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC-CCCccccEEEEC-CEEC-CCCCCceEEEEe
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS-KNVILTGSVQLN-RKKG-GTNRRDIVSINL 116 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~-~~~~~~G~i~~~-g~~~-~~~~~~i~~v~~ 116 (122)
++++++. .+|++++|+||||||||||+++|+|+.. + .+|+|.++ |+.. ......++++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q 268 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPH 268 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECC
Confidence 3455543 4799999999999999999999999988 7 48999886 6543 223445666643
No 96
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=1.2e-10 Score=95.30 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=45.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.+++++++.+++|+.++|+|||||||||||++|+|+++|. +|.|.+.|..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcc
Confidence 4678899999999999999999999999999999999884 8999998764
No 97
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.92 E-value=1.1e-10 Score=91.82 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=43.4
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCC-CCCceEEEEe
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGT-NRRDIVSINL 116 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~-~~~~i~~v~~ 116 (122)
+++|++++|+||||||||||+++|++++.+. .+|.|.+.+.++.. .+..+++|++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQ 188 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEe
Confidence 7899999999999999999999999998761 16999776655432 2345677877
No 98
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.91 E-value=1.1e-10 Score=88.03 Aligned_cols=48 Identities=29% Similarity=0.256 Sum_probs=41.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc-EEEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG-SVQLN 100 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G-~i~~~ 100 (122)
..+|+++++.+++|++++|+||||||||||++.|++...+. +| .+.+.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~ 70 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLA 70 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEE
Confidence 35789999999999999999999999999999999998763 46 56543
No 99
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.90 E-value=1e-09 Score=83.94 Aligned_cols=54 Identities=24% Similarity=0.188 Sum_probs=37.5
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE---CCEECCCCC-----CceEEEEe
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL---NRKKGGTNR-----RDIVSINL 116 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~---~g~~~~~~~-----~~i~~v~~ 116 (122)
.+..|++++|+||||||||||+++|+ +..+. +|+|.+ +|+...... +.++|+++
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d 222 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGD 222 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEES
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEE
Confidence 34578999999999999999999999 88874 899999 887654321 24567753
No 100
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=2.3e-10 Score=91.98 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=33.0
Q ss_pred EeeceEEEcCCcE--EEEEcCCCCcHHHHHHHHhcCc
Q 033293 53 INGLTGYAQPDRI--MAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 53 l~~is~~i~~g~~--~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++++|.+++|++ ++|+||||||||||+++|+|+.
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 9999999999999 9999999999999999999984
No 101
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.89 E-value=3.6e-10 Score=87.85 Aligned_cols=42 Identities=26% Similarity=0.307 Sum_probs=38.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
++|++++|+||||||||||++.|+|++.+. .|+|.+.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeeccc
Confidence 689999999999999999999999999874 899999988753
No 102
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.89 E-value=1.4e-09 Score=76.09 Aligned_cols=35 Identities=31% Similarity=0.306 Sum_probs=31.5
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+++++.+.+| +++|+||||||||||+++|++++.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5788899998 9999999999999999999987654
No 103
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=2.9e-10 Score=87.81 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=26.8
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE---CCEECC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL---NRKKGG 105 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~---~g~~~~ 105 (122)
+.+.+|++++|+||||+|||||+++|+|+..+. .|+|.+ +|+...
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt 215 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTT 215 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------C
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccc
Confidence 566789999999999999999999999998874 899998 776554
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.84 E-value=2.3e-10 Score=81.25 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=33.4
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++++++++.+. ..++++ |.+.+|..++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~-------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 366777777653 245666 888999999999999999999999999987
No 105
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.84 E-value=1.3e-09 Score=93.76 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=33.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHH-HhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDA-LAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~-L~gl~ 87 (122)
.|+++||.|++|++++|+|+||||||||+++ |+|++
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999996 77654
No 106
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.83 E-value=1.8e-09 Score=82.61 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=22.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC-cCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR-LSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl-~~~~~~~~G~i~~~g~~~ 104 (122)
+.++++++|.| +|+||||+|||||+++|+|. +.+. +| +.++|.+.
T Consensus 11 ~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~ 56 (301)
T 2qnr_A 11 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKI 56 (301)
T ss_dssp -------CEEE------EEEEETTSSHHHHHHHHHC--------------------
T ss_pred EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCccc
Confidence 56899999988 99999999999999999997 6553 67 76666543
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.83 E-value=4e-10 Score=93.65 Aligned_cols=42 Identities=29% Similarity=0.273 Sum_probs=30.7
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
+.++. +||+|||||||||||++|+|+..|. .+|.|.++|.++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~~i 84 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPLVL 84 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEE
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCEEE
Confidence 55554 9999999999999999999998662 389999999873
No 108
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.83 E-value=2.8e-10 Score=88.64 Aligned_cols=44 Identities=30% Similarity=0.440 Sum_probs=39.2
Q ss_pred EeeceEEEcC--CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccc----cEEEE
Q 033293 53 INGLTGYAQP--DRIMAIMGPSGSGKSTLLDALAGRLSKNVILT----GSVQL 99 (122)
Q Consensus 53 l~~is~~i~~--g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~----G~i~~ 99 (122)
...|++.+.+ |+.++|+||||||||||+++|+|++.+. + |++.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHH
Confidence 4668999999 9999999999999999999999999873 6 77765
No 109
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.83 E-value=2e-09 Score=86.15 Aligned_cols=49 Identities=29% Similarity=0.318 Sum_probs=40.9
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG 105 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~ 105 (122)
+|+++ + ..+|++++|+|||||||||||++|+|++.+. +|+|.+.+.++.
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie 206 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIE 206 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCC
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccch
Confidence 45555 3 3789999999999999999999999998874 899999887654
No 110
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.82 E-value=2.6e-09 Score=76.01 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=30.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECC--CCCCceEEEEe
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGG--TNRRDIVSINL 116 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~--~~~~~i~~v~~ 116 (122)
+++|+||||||||||+++|+|++.. ...|... +... ...+.++|+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~ 50 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRII 50 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEee
Confidence 5899999999999999999998752 2334221 1111 23456788765
No 111
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.81 E-value=2.5e-09 Score=75.73 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=27.4
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+++.+|++++|+|||||||||++++|++++.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 35789999999999999999999999998855
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.81 E-value=1e-09 Score=78.78 Aligned_cols=28 Identities=46% Similarity=0.605 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999764
No 113
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.80 E-value=1.4e-09 Score=77.86 Aligned_cols=29 Identities=41% Similarity=0.527 Sum_probs=25.6
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++|++++|+||||||||||+++|+|++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999999999865
No 114
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.79 E-value=2.7e-10 Score=85.53 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=36.0
Q ss_pred eeeEEeeE-EEEEeeeeccccceeEeeceEEEcC---CcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 30 AHLVWEEV-KVEAKNLRNGAKKKLINGLTGYAQP---DRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 30 ~~l~~~~l-~~~~~~~~~~~~~~il~~is~~i~~---g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..++++++ ++.+. ....+|++++|.+.+ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~-----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ---------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEec-----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788888 77652 135699999999999 99999999999999999999998543
No 115
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=1.6e-09 Score=76.68 Aligned_cols=27 Identities=48% Similarity=0.721 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999998863
No 116
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=5e-09 Score=74.79 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=24.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...++++||.+.++.+++|+|++||||||+.+.|+..+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45889999999999999999999999999999999754
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.72 E-value=5.5e-09 Score=73.68 Aligned_cols=29 Identities=14% Similarity=0.432 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+|++++|+||||||||||+++|+++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 36899999999999999999999998753
No 118
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.72 E-value=4.5e-09 Score=75.07 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=30.1
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
...+..++|++++|+||||||||||+++|++.+ |.+.+++.+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~ 62 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADA 62 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccc
Confidence 334566789999999999999999999999864 556676654
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.71 E-value=1.5e-09 Score=77.62 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=39.5
Q ss_pred ceeEeeceE-EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 50 KKLINGLTG-YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 50 ~~il~~is~-~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
...|+++.+ .+++|++++|+||||||||||++.|++...+ ..|.+.+.+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~ 58 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVT 58 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEE
Confidence 346777776 7999999999999999999999999987654 256666544
No 120
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.70 E-value=2e-09 Score=76.54 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=31.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
++++|+|+||||||||+++|++++.+.....|.|.+++.++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCccc
Confidence 57999999999999999999999876322379999998773
No 121
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.69 E-value=6.7e-09 Score=90.93 Aligned_cols=52 Identities=21% Similarity=0.228 Sum_probs=39.5
Q ss_pred eeEEee-----EEEEEeeeeccccceeEeeceEEEcC-------CcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 31 HLVWEE-----VKVEAKNLRNGAKKKLINGLTGYAQP-------DRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 31 ~l~~~~-----l~~~~~~~~~~~~~~il~~is~~i~~-------g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+++++ +...+. ....++++++|.+.+ |++++|+||||||||||||++ |++.
T Consensus 750 ~l~i~~~rHP~l~~~~~-----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CEEEEEECCCC-----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred eEEEEeccccEEEEEec-----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 467777 554431 135699999999987 899999999999999999999 8764
No 122
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.69 E-value=7.9e-09 Score=88.51 Aligned_cols=37 Identities=30% Similarity=0.292 Sum_probs=34.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..++++++|. ++|++++|+||||||||||||+|+|+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4689999999 999999999999999999999999964
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.69 E-value=4.5e-09 Score=91.15 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=34.9
Q ss_pred cceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 49 KKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 49 ~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
...++++++|.+++|++++|+|||||||||||++++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 35689999999999999999999999999999999854
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.68 E-value=2.9e-09 Score=76.08 Aligned_cols=50 Identities=30% Similarity=0.319 Sum_probs=40.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEE--EECCEEC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSV--QLNRKKG 104 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i--~~~g~~~ 104 (122)
...+..++..++|++++|+|||||||||++++|++++.. .|.+ ++++..+
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 344567777789999999999999999999999998752 5666 7776543
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.67 E-value=3.7e-09 Score=82.94 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=34.5
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
...+|++++|+|||||||||||++|+|++.+. ..|.|...+.++
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~ 162 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPI 162 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSC
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcH
Confidence 56788899999999999999999999998762 146665544333
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.67 E-value=6.6e-09 Score=73.16 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
|++++|+||||||||||+++|++ + ..|.+.+++.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~---~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---Q---LDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---H---SSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---c---cCCeEEEcccc
Confidence 57899999999999999999997 2 26778887754
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.64 E-value=2.6e-08 Score=79.64 Aligned_cols=35 Identities=23% Similarity=0.160 Sum_probs=32.9
Q ss_pred EeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 53 INGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 53 l~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-+++++.++.++.++|+|+|||||||||++|++..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 46899999999999999999999999999999974
No 128
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.64 E-value=2.7e-09 Score=78.47 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCcCCCCccccEEEECC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALA---GRLSKNVILTGSVQLNR 101 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~---gl~~~~~~~~G~i~~~g 101 (122)
++++++|+||||||||||+++|+ |+..+ ..|++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHH
Confidence 46899999999999999999999 98876 367776654
No 129
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.63 E-value=3.3e-09 Score=80.01 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=40.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
..+++++++.+++| ++|+||||||||||+++|++...+ +.+.++|.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l 80 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPEL 80 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHH
Confidence 34788999999999 899999999999999999998753 5788877654
No 130
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.62 E-value=1.9e-08 Score=87.43 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=32.5
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDAL 83 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L 83 (122)
..++++++|.+.+|++++|+||||||||||||++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999999999999999999999
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.62 E-value=2.1e-08 Score=72.20 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=27.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999998865
No 132
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=8e-09 Score=82.68 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=34.0
Q ss_pred eeEEeeEEEEEeeeeccccceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 31 HLVWEEVKVEAKNLRNGAKKKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 31 ~l~~~~l~~~~~~~~~~~~~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+.+++++..+. ...++++++|.| +|+|+||||||||+++|+|...+
T Consensus 11 ~l~~~~l~~~y~------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 11 YVGFANLPNQVY------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp ----CCCCCCTT------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred cEEEEecceeEC------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC
Confidence 355555554331 356899999998 99999999999999999998753
No 133
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.62 E-value=1e-08 Score=75.00 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=33.4
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
-++..++|++++|.|+||||||||+++|+++ .|+|.+.+.+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~ 53 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEP 53 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCT
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecC
Confidence 3445578999999999999999999999997 3567776654
No 134
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.61 E-value=1.3e-08 Score=86.86 Aligned_cols=36 Identities=31% Similarity=0.282 Sum_probs=33.1
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..++++++|. |++++|+||||||||||||+|+|+..
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 5689999998 99999999999999999999999753
No 135
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.61 E-value=3.3e-08 Score=71.43 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=35.5
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhc--CcCCC--CccccEEEECCEE
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG--RLSKN--VILTGSVQLNRKK 103 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~g--l~~~~--~~~~G~i~~~g~~ 103 (122)
.-+++|++++|+||||||||||++.|++ ..++. ....|.+++++..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4689999999999999999999999999 44330 0025778887654
No 136
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.59 E-value=5.2e-09 Score=77.78 Aligned_cols=41 Identities=29% Similarity=0.367 Sum_probs=35.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHh---cCcCCCCccccEEE--------ECCEEC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALA---GRLSKNVILTGSVQ--------LNRKKG 104 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~---gl~~~~~~~~G~i~--------~~g~~~ 104 (122)
.+|++++|+|||||||||++++|+ |+..+ .+|.+. .+|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCc
Confidence 789999999999999999999999 88766 488887 777655
No 137
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.58 E-value=2.5e-08 Score=78.35 Aligned_cols=34 Identities=26% Similarity=0.282 Sum_probs=31.4
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
+.++++++.+.+| +++|+||||||||||+++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3567899999999 999999999999999999997
No 138
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.57 E-value=2.3e-08 Score=76.76 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=34.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc--------CCCCccccEEEECCEECCC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL--------SKNVILTGSVQLNRKKGGT 106 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~--------~~~~~~~G~i~~~g~~~~~ 106 (122)
++++|+|+||||||||++.|+|+. .+ ..|+|.++|.++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~ 52 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGD 52 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECT
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhC
Confidence 589999999999999999999986 44 48999999887643
No 139
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.55 E-value=6.4e-08 Score=74.18 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=28.6
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++.+.+| +++|+||||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 567888888 99999999999999999999654
No 140
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.55 E-value=2.5e-08 Score=87.04 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=31.2
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
+|+++||.|++|++++|+|+||||||||+++|+
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999853
No 141
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.55 E-value=1.5e-08 Score=83.92 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=53.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEECCCCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKGGTNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~~~~~~~i~~v~~ 116 (122)
..+++.+++.+.+|+.++|+||||+|||||+++|++++.+. ..|.+.+.+.+.......+.++|.
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~p~i~~~p~ 111 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENMPRIKTVPA 111 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTSCEEEEEET
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccCCcEEEEec
Confidence 45889999999999999999999999999999999998774 247888877766555556777764
No 142
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.52 E-value=8.6e-08 Score=67.58 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCCC--------ccccEEEECCEE
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKNV--------ILTGSVQLNRKK 103 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~~--------~~~G~i~~~g~~ 103 (122)
.++|+|+||||||||++.+++...+.. ...|.+.++|++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 689999999999999999999764310 136888888864
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=3.3e-08 Score=68.34 Aligned_cols=38 Identities=24% Similarity=0.448 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc--EEEECCEE
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG--SVQLNRKK 103 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G--~i~~~g~~ 103 (122)
+|+.++|+||||+|||||++++++...+ .| .+++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE----AGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT----TTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh----cCCcEEEEcHHH
Confidence 8999999999999999999999998765 45 56665543
No 144
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.51 E-value=2.5e-08 Score=86.80 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=31.7
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
..|+++||.|++|++++|+|+||||||||+++|+
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3699999999999999999999999999999864
No 145
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.51 E-value=3.1e-08 Score=77.21 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=39.8
Q ss_pred eEeec-eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc--CCCC-ccccE-EEECCEE
Q 033293 52 LINGL-TGYAQPDRIMAIMGPSGSGKSTLLDALAGRL--SKNV-ILTGS-VQLNRKK 103 (122)
Q Consensus 52 il~~i-s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~--~~~~-~~~G~-i~~~g~~ 103 (122)
.|+.+ .+.+++|++++|+||||||||||++.|++.. +|.. ...|. +++++..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 34444 5889999999999999999999999999987 3320 01267 7887754
No 146
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.50 E-value=1.5e-08 Score=74.44 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=38.3
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
.+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~ 83 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 83 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH
Confidence 4788899999999 89999999999999999999764 566777654
No 147
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.49 E-value=1.9e-08 Score=72.02 Aligned_cols=39 Identities=31% Similarity=0.290 Sum_probs=32.1
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEEC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLN 100 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~ 100 (122)
...++.+++|+|+||||||||+++|++++.+. .|.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~ 56 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVF 56 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEe
Confidence 35678999999999999999999999987652 5666654
No 148
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.49 E-value=7.5e-08 Score=75.36 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=29.4
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++++++.+.+| +++|+|||||||||||.+|+..
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 456778889988 8999999999999999999843
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.49 E-value=3.1e-08 Score=69.26 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.8
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++.+.+|+.++|+||||+|||||+++|++.+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999999999875
No 150
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.48 E-value=2e-08 Score=79.38 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=34.6
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++++++.+++|++++|+||||||||||+++|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999999999999999999853
No 151
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.48 E-value=1.8e-08 Score=75.27 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=38.4
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRK 102 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~ 102 (122)
.+++++++.+++| ++|+||||||||||+++|++... .|.+.+++.
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~ 107 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS 107 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH
Confidence 4678899999998 89999999999999999999764 567777654
No 152
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.45 E-value=1.2e-07 Score=82.31 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=28.7
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
..|+++||.|++|++++|+|+||||||||+
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 479999999999999999999999999997
No 153
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.44 E-value=1.4e-09 Score=83.74 Aligned_cols=68 Identities=25% Similarity=0.410 Sum_probs=46.8
Q ss_pred ceeEeeceEEEcCC-------cEEEEEcCCCCcHHHHHHHHhcCcCCCC-ccccEEEECCEECC-----CCCCceEEEEe
Q 033293 50 KKLINGLTGYAQPD-------RIMAIMGPSGSGKSTLLDALAGRLSKNV-ILTGSVQLNRKKGG-----TNRRDIVSINL 116 (122)
Q Consensus 50 ~~il~~is~~i~~g-------~~~~IiG~nGsGKSTLl~~L~gl~~~~~-~~~G~i~~~g~~~~-----~~~~~i~~v~~ 116 (122)
..+++++++.+.+| +.++|+||||+|||||+++|++.+.... ..+|.+..++.++. .....+.+++.
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35778888888766 7899999999999999999999873211 13555554443321 12346777765
Q ss_pred e
Q 033293 117 I 117 (122)
Q Consensus 117 ~ 117 (122)
+
T Consensus 111 ~ 111 (334)
T 1in4_A 111 I 111 (334)
T ss_dssp G
T ss_pred h
Confidence 4
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.44 E-value=7.5e-08 Score=66.47 Aligned_cols=28 Identities=39% Similarity=0.593 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+.+++|+|+|||||||++++|++.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3678999999999999999999997653
No 155
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=2.9e-08 Score=76.78 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=41.6
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.+++|.+.++++++|+|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~ 143 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADT 143 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 6788989999999999999999999999999988763 67888866554
No 156
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.42 E-value=1.3e-07 Score=75.05 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=28.8
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+.+.++++++|+|||||||||||++|++++.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45678999999999999999999999998765
No 157
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.41 E-value=5.1e-08 Score=80.47 Aligned_cols=42 Identities=38% Similarity=0.437 Sum_probs=35.4
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc-EEE-ECCEE
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG-SVQ-LNRKK 103 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G-~i~-~~g~~ 103 (122)
.+.+|++++|+|+||||||||+++|++++.+. .| .+. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 46799999999999999999999999998773 54 674 77754
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.40 E-value=1.4e-07 Score=65.40 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+|++++|+|+|||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999853
No 159
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.40 E-value=1.3e-07 Score=68.80 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=26.1
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
...+|++++|+||||||||||++.|++..+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999999998764
No 160
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.38 E-value=6.2e-08 Score=74.56 Aligned_cols=47 Identities=26% Similarity=0.328 Sum_probs=38.8
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
.+++...++++++|+|+|||||||++..|++++.+. .|+|.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~ 142 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADT 142 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECT
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccc
Confidence 345566789999999999999999999999998763 67888876653
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.36 E-value=3.1e-07 Score=72.95 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=33.6
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcC------------cCCCCccccEEEECC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGR------------LSKNVILTGSVQLNR 101 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl------------~~~~~~~~G~i~~~g 101 (122)
.+..|..++|+|+||+|||||+++|+|. +.| ..|.+.+.|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCC
Confidence 4578999999999999999999999992 233 478888876
No 162
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.36 E-value=5.4e-08 Score=75.50 Aligned_cols=39 Identities=28% Similarity=0.257 Sum_probs=32.7
Q ss_pred ceeEeeceEEEcCCc------EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 50 KKLINGLTGYAQPDR------IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 50 ~~il~~is~~i~~g~------~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
...+++++..+..+. ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346667777776665 999999999999999999999876
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.34 E-value=3.8e-07 Score=64.33 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC-----CCC---ccccEEEECCEE
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS-----KNV---ILTGSVQLNRKK 103 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~-----~~~---~~~G~i~~~g~~ 103 (122)
.++|+|+||||||||++.|+|... |.. ...|.+.++|++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999753 211 125788888864
No 164
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.33 E-value=2.7e-07 Score=65.77 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=27.2
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.+.++.+++|+|++||||||+++.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356788999999999999999999999976
No 165
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.33 E-value=9.2e-08 Score=77.85 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=30.7
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
++.+++|++++|+||||||||||+++++|...+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999999999999999998766
No 166
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.33 E-value=3e-07 Score=63.47 Aligned_cols=29 Identities=41% Similarity=0.479 Sum_probs=23.3
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
..+.+.+| +++|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34445544 999999999999999999873
No 167
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.32 E-value=3e-07 Score=65.35 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=29.8
Q ss_pred eEeeceE-EEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 52 LINGLTG-YAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 52 il~~is~-~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.|+.+.. -+++|++++|+||||||||||++.|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4555553 689999999999999999999999998
No 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.32 E-value=1.1e-07 Score=72.61 Aligned_cols=46 Identities=20% Similarity=0.065 Sum_probs=39.3
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEEC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKKG 104 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~~ 104 (122)
++++|. +|++++|+|+||+||||++..|++++.+. .|++.+.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~ 136 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCS
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCc
Confidence 677887 89999999999999999999999998763 67888876654
No 169
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.29 E-value=3.8e-07 Score=68.11 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=27.2
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
-+++|++++|+||||||||||++.+++.+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999999998653
No 170
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.24 E-value=2.8e-07 Score=64.25 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=24.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+|.+++|+|++||||||++++|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 171
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.23 E-value=9.6e-07 Score=70.22 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=33.7
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHH--hcCcCCCC--ccccEEEECCEE
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDAL--AGRLSKNV--ILTGSVQLNRKK 103 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L--~gl~~~~~--~~~G~i~~~g~~ 103 (122)
.-|++|++++|+||||||||||++.| ++..++.. ...+.++|++..
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 56899999999999999999999954 45554310 013467777654
No 172
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.18 E-value=1.4e-07 Score=72.99 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=35.4
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..+++++++.+..+.+++|+|++|+|||||++.|++.+.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3577888998999999999999999999999999987643
No 173
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.16 E-value=7.2e-07 Score=63.97 Aligned_cols=37 Identities=35% Similarity=0.567 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
+.+++|+|++||||||++++|++.+.-.....|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999865211113566554
No 174
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.15 E-value=6.7e-07 Score=68.26 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc-EEEECCE
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG-SVQLNRK 102 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G-~i~~~g~ 102 (122)
.+|++++|+|+||+||||++..|++.+.+. .| +|.+-+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cCCEEEEEec
Confidence 478999999999999999999999988642 56 5655433
No 175
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.15 E-value=8e-07 Score=65.26 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=26.6
Q ss_pred eEeeceEEEc---CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 52 LINGLTGYAQ---PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 52 il~~is~~i~---~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
-|.++++.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3556666665 899999999999999999999998765
No 176
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.14 E-value=1.6e-06 Score=66.91 Aligned_cols=28 Identities=43% Similarity=0.535 Sum_probs=22.6
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
..+.+.+| +++|+||||||||||+.+|.
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455554 99999999999999999874
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.12 E-value=1.5e-06 Score=61.69 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+++|+|++||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 178
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.11 E-value=1.6e-06 Score=62.46 Aligned_cols=28 Identities=43% Similarity=0.522 Sum_probs=22.8
Q ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 56 LTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 56 is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
.++.+.+ .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 499999999999999999886
No 179
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.10 E-value=6.8e-07 Score=69.53 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
.++.+++|+|++|||||||++.|++.+.+. .|+|.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~ 109 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLA 109 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEe
Confidence 346799999999999999999999976542 45555443
No 180
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=4.3e-07 Score=74.47 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=38.0
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
++.++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.+.+.+
T Consensus 98 ~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 98 AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 556777777 89999999999999999999999988652 66666655
No 181
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.07 E-value=1.9e-06 Score=61.49 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.4
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+|.+++|+||||||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35688899999999999999999998765
No 182
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.05 E-value=5.9e-07 Score=72.95 Aligned_cols=34 Identities=32% Similarity=0.340 Sum_probs=30.7
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++++++.+.+| +++|+|+|||||||||.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 567889999999 9999999999999999999665
No 183
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.05 E-value=2.2e-06 Score=60.24 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=26.1
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
++|+....+.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46778888999999999999999999999875
No 184
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.04 E-value=5.7e-07 Score=71.98 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=31.4
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
No 185
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.04 E-value=9.7e-07 Score=63.29 Aligned_cols=43 Identities=28% Similarity=0.234 Sum_probs=34.4
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCcccc--EEEECCEE
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTG--SVQLNRKK 103 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G--~i~~~g~~ 103 (122)
+.+.+|.+++|+|++||||||+.+.|++.+.+ ..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVR---DRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHH---HHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhcc---ccCCcEEEECChH
Confidence 34578899999999999999999999998764 256 67776543
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.5e-06 Score=66.13 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHhc-CcCCCCccccEEEECCEE
Q 033293 66 MAIMGPSGSGKSTLLDALAG-RLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 66 ~~IiG~nGsGKSTLl~~L~g-l~~~~~~~~G~i~~~g~~ 103 (122)
+.|.||||+|||||+++|++ +..+. .|.+.++|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEeccee
Confidence 89999999999999999999 66663 7888877654
No 187
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.02 E-value=2.4e-06 Score=60.42 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 188
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.01 E-value=3.2e-06 Score=58.45 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+|..++|+|++|+|||||++.|++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999864
No 189
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.01 E-value=2.1e-06 Score=65.40 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=26.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.++.+++|+|++|||||||++.|++++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46789999999999999999999998764
No 190
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.00 E-value=6.9e-06 Score=64.00 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=25.3
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
.+..+.+.+| +++|+|+|||||||+|.+|.
T Consensus 17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4566666664 99999999999999999986
No 191
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.98 E-value=4.4e-06 Score=60.11 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=27.3
Q ss_pred eEeec-eEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 52 LINGL-TGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 52 il~~i-s~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.|+.+ ..-+++|++++|.||||||||||+..++.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45555 66789999999999999999999655543
No 192
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.94 E-value=3.2e-06 Score=65.47 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=26.6
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+|+++++.++ .++|+|++|||||||++.|.|.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 47888888888 8999999999999999999994
No 193
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.94 E-value=1e-05 Score=64.34 Aligned_cols=39 Identities=28% Similarity=0.402 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC------CC---CccccEEEECCEE
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS------KN---VILTGSVQLNRKK 103 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~------~~---~~~~G~i~~~g~~ 103 (122)
.++|+|+||+|||||++.|+|... ++ ....|.+.++|++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 799999999999999999999753 00 0136788888875
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.93 E-value=2e-06 Score=70.22 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=37.6
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.+++++++.++.| +.|+||+|+|||||+++|++... .+.+.+++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~ 99 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSD 99 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGG
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhH
Confidence 4677888888888 89999999999999999999764 4566666543
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.91 E-value=3.7e-06 Score=58.80 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.4
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..+|.+++|+|++||||||+.+.|+..+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999987653
No 196
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.90 E-value=6.9e-06 Score=56.08 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 197
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.90 E-value=5.1e-06 Score=58.94 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
.+++|+|+||||||||++.|++.+......-|.+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 57899999999999999999987543211235666544
No 198
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.89 E-value=3.1e-06 Score=67.87 Aligned_cols=45 Identities=20% Similarity=0.075 Sum_probs=37.6
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
+++++. ++++++++|++||||||++..|++.+.+. .+++.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567776 88999999999999999999999998763 6778776554
No 199
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.89 E-value=6.4e-06 Score=57.66 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=20.5
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4778888887776 679999999999999999997
No 200
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.88 E-value=1.2e-05 Score=62.88 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcCCC--------CccccEEEECCEE
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLSKN--------VILTGSVQLNRKK 103 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~~~--------~~~~G~i~~~g~~ 103 (122)
+++|+|++|||||||++.|+|..... ....+.+.++|.+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE
Confidence 49999999999999999999975410 0246788888764
No 201
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.86 E-value=4.6e-06 Score=63.41 Aligned_cols=25 Identities=44% Similarity=0.612 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3489999999999999999999863
No 202
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.85 E-value=6.1e-06 Score=58.40 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+++|+|++||||||+.+.|+..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 203
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.83 E-value=1e-05 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 204
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.83 E-value=8.9e-06 Score=56.46 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.|.+++|+|++||||||+.+.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
No 205
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.82 E-value=5.9e-06 Score=64.83 Aligned_cols=32 Identities=34% Similarity=0.391 Sum_probs=28.5
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.-+++|+++.|.||+|||||||+..++....+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999999999987654
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.81 E-value=2.4e-06 Score=65.24 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=36.6
Q ss_pred ee-ceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECCEE
Q 033293 54 NG-LTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNRKK 103 (122)
Q Consensus 54 ~~-is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g~~ 103 (122)
.+ +++..+ +.+++++|++|+||||++..|++.+.+. .+++.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 45 677766 8999999999999999999999987652 5677765544
No 207
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.81 E-value=1.4e-05 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999997653
No 208
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.81 E-value=1.2e-05 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 209
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.80 E-value=1.3e-05 Score=55.27 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.79 E-value=1.6e-06 Score=68.22 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.0
Q ss_pred eeEeeceEEEcCCcE--EEEEcCCCCcHHHHHHHHhcCc
Q 033293 51 KLINGLTGYAQPDRI--MAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 51 ~il~~is~~i~~g~~--~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467788888899988 9999999999999999999865
No 211
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.76 E-value=1.6e-05 Score=57.83 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=23.4
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.-.++.+++|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999999996
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=2.3e-06 Score=65.48 Aligned_cols=40 Identities=23% Similarity=0.529 Sum_probs=34.6
Q ss_pred ceeEeeceEEEcCCcE--EEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 50 KKLINGLTGYAQPDRI--MAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 50 ~~il~~is~~i~~g~~--~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..+++.++..+..|++ +.|.||+|+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3477788888899988 999999999999999999997643
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.73 E-value=2.1e-05 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998744
No 214
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.73 E-value=3e-06 Score=59.86 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=29.3
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.+++++++..++. .++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4778888877776 578999999999999999987
No 215
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.70 E-value=2.2e-05 Score=53.12 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 033293 65 IMAIMGPSGSGKSTLLDAL 83 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L 83 (122)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 216
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.69 E-value=2.4e-05 Score=62.23 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=24.6
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+..+..++|+|++|+|||||+++|++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567788999999999999999999997
No 217
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.69 E-value=2.2e-05 Score=54.54 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998643
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.68 E-value=1.3e-05 Score=58.73 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=23.5
Q ss_pred eeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 54 NGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 54 ~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+.+.++.| +.|.||+|+|||||+++|++...
T Consensus 38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 3344444444 88999999999999999998764
No 219
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.68 E-value=1.6e-05 Score=58.67 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
....+.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456678999999999999999999998654
No 220
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.67 E-value=2.5e-05 Score=54.57 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 221
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.67 E-value=2.4e-05 Score=67.47 Aligned_cols=31 Identities=29% Similarity=0.451 Sum_probs=28.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
..=|+||++.|+.+.+++|.|.||||||||.
T Consensus 23 ~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 23 QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 3468999999999999999999999999997
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.64 E-value=1.9e-05 Score=67.52 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=28.7
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
+.+.+++.+.|+||+|||||||+++|++.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 36789999999999999999999999998754
No 223
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.63 E-value=2.8e-05 Score=55.77 Aligned_cols=23 Identities=52% Similarity=0.758 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
No 224
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.63 E-value=3.6e-05 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999999998643
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.63 E-value=2.7e-05 Score=57.69 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|+||+|||||||.+.|+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.61 E-value=3.6e-05 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 227
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.60 E-value=4.3e-05 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999765
No 228
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.60 E-value=4.1e-05 Score=54.71 Aligned_cols=23 Identities=48% Similarity=0.642 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
+-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 229
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.60 E-value=3.6e-05 Score=57.08 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999984
No 230
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.59 E-value=3.8e-05 Score=55.66 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999654
No 231
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.59 E-value=1.5e-05 Score=56.40 Aligned_cols=24 Identities=42% Similarity=0.775 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987664
No 232
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.59 E-value=3.8e-05 Score=53.23 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..+.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999843
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.57 E-value=3.9e-05 Score=53.02 Aligned_cols=23 Identities=52% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 234
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.57 E-value=4.6e-05 Score=53.47 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999987554
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.56 E-value=5.3e-05 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45779999999999999999999864
No 236
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.56 E-value=4.4e-05 Score=52.73 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 237
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.55 E-value=5.2e-05 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++.+++|+|++||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
No 238
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.55 E-value=4.6e-05 Score=53.32 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
No 239
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.53 E-value=4.7e-05 Score=56.48 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 240
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.52 E-value=6.3e-05 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999864
No 241
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.51 E-value=5.1e-05 Score=66.43 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=28.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
..=|+||++.|+.+++++|.|.||||||||.
T Consensus 33 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 4468999999999999999999999999986
No 242
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.51 E-value=5.2e-05 Score=66.21 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=28.8
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
..=|+||++.|+.+++++|.|.||||||||.
T Consensus 31 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 4468999999999999999999999999986
No 243
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.50 E-value=5.2e-05 Score=57.29 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998644
No 244
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.50 E-value=6.9e-05 Score=56.54 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.5
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+.++..+.|.||+|+|||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467888999999999999999999998653
No 245
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.49 E-value=6.5e-05 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.48 E-value=7.1e-05 Score=58.26 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=26.0
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.-+++|+++.|.||+|+|||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999988887543
No 247
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.48 E-value=4.2e-05 Score=66.49 Aligned_cols=31 Identities=35% Similarity=0.489 Sum_probs=28.9
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHH
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLL 80 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl 80 (122)
..=|+||++.|+.+++++|.|+||||||||.
T Consensus 11 ~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp STTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 4468999999999999999999999999996
No 248
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.46 E-value=7.4e-05 Score=51.98 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 249
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.44 E-value=7.2e-05 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 250
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.43 E-value=7.8e-05 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 251
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.43 E-value=8.7e-05 Score=52.06 Aligned_cols=23 Identities=48% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999998743
No 252
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=3.3e-05 Score=60.23 Aligned_cols=32 Identities=34% Similarity=0.402 Sum_probs=26.7
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.++++++|.| +|+|++|+|||||++.|.+..
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 34667787766 999999999999999998754
No 253
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.42 E-value=9.4e-05 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47999999999999999999853
No 254
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.42 E-value=9e-05 Score=51.64 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=23.6
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..+.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456789999999999999999998643
No 255
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.42 E-value=5.6e-05 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998654
No 256
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.41 E-value=8.7e-05 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 257
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=0.0001 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 258
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.40 E-value=5.7e-05 Score=63.29 Aligned_cols=32 Identities=38% Similarity=0.438 Sum_probs=26.0
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++.++++..++|+|++|+|||||++.|++...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 34567889999999999999999999996543
No 259
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.40 E-value=9.8e-05 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 260
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.39 E-value=0.00011 Score=49.32 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998643
No 261
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.39 E-value=0.00012 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998643
No 262
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.38 E-value=9.3e-05 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.38 E-value=7e-05 Score=58.34 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEE
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQL 99 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~ 99 (122)
.+..++|+|++|||||||++.|+..... ..+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEE
Confidence 5667899999999999999999986543 2445554
No 264
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.38 E-value=9e-05 Score=49.33 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 265
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.38 E-value=0.00011 Score=50.83 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 266
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.37 E-value=9.7e-05 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999975
No 267
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.37 E-value=8e-05 Score=51.32 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=18.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998543
No 268
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.37 E-value=9.5e-05 Score=50.07 Aligned_cols=23 Identities=43% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 269
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.37 E-value=9.3e-05 Score=49.30 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 270
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.37 E-value=0.00011 Score=55.24 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999954
No 271
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.36 E-value=0.00011 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 272
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.36 E-value=4e-05 Score=61.21 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.5
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..|+.+..-+++|+++.|.|++|+|||||+..++....
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777887899999999999999999999999987654
No 273
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.36 E-value=0.00011 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
No 274
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.35 E-value=0.00016 Score=49.02 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.-.++|+|++|+|||||++.+.+-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447899999999999999999874
No 275
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.35 E-value=0.00012 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+.+++|+|++||||||+.+.|+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 276
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.35 E-value=0.00013 Score=49.94 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
No 277
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.35 E-value=0.00012 Score=50.31 Aligned_cols=23 Identities=48% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999999864
No 278
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.35 E-value=0.0001 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.35 E-value=0.00012 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 280
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.34 E-value=9.7e-05 Score=49.51 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 281
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.34 E-value=9.8e-05 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
No 282
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.34 E-value=0.0001 Score=49.26 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 283
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.34 E-value=0.00011 Score=49.27 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 284
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=0.00012 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+++|.|++||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 285
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.34 E-value=0.00011 Score=49.16 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.33 E-value=0.00014 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 287
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.32 E-value=0.00012 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
No 288
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.32 E-value=0.00011 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.32 E-value=9.4e-05 Score=60.61 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=27.6
Q ss_pred eceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 55 GLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 55 ~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.+.+.+..+..+.|.|++||||||++++|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4677788899999999999999999999875
No 290
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.32 E-value=0.00014 Score=49.86 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999853
No 291
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.31 E-value=0.00012 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998543
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.31 E-value=0.00017 Score=50.80 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+-+++|+|+.||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.31 E-value=0.00012 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 294
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.30 E-value=0.00013 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999985
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.30 E-value=6.5e-05 Score=60.35 Aligned_cols=37 Identities=32% Similarity=0.274 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcCCCCccccEEEECC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLSKNVILTGSVQLNR 101 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~~~~~~~G~i~~~g 101 (122)
++.+++++|++|+||||++..|+..+.+. .+++.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 47899999999999999999999877642 45565533
No 296
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.00016 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999843
No 297
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.29 E-value=0.00013 Score=48.78 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 298
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.29 E-value=9.5e-05 Score=53.64 Aligned_cols=25 Identities=24% Similarity=0.492 Sum_probs=21.6
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
+..|+.++++||+||||||++..++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4578999999999999999887665
No 299
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.28 E-value=0.00013 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 300
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.28 E-value=0.00016 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+|+|||||++.|.|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999999854
No 301
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.28 E-value=0.00015 Score=53.15 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-+++|.|++||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 302
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.28 E-value=0.00011 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~g 85 (122)
-.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.28 E-value=0.00017 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47999999999999999998743
No 304
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.28 E-value=0.00019 Score=50.79 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998754
No 305
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.27 E-value=0.00015 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 306
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.27 E-value=0.00016 Score=49.66 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++|+|++|+|||||++.+.+...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998654
No 307
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.26 E-value=0.00016 Score=54.86 Aligned_cols=23 Identities=48% Similarity=0.686 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+++|+|++|+|||||++.|.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 38999999999999999999985
No 308
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.26 E-value=0.00016 Score=48.52 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
No 309
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.00016 Score=55.82 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.3
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.-+++|+++.|.||+|+|||||+..++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999988874
No 310
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.26 E-value=0.00017 Score=54.84 Aligned_cols=22 Identities=50% Similarity=0.730 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+++|+|.+|+|||||++.|.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 311
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.25 E-value=0.00014 Score=50.33 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998643
No 312
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.25 E-value=0.00016 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 313
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00016 Score=55.86 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..-.++|+|++|+|||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34479999999999999999999864
No 314
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.24 E-value=0.00018 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999864
No 315
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.23 E-value=0.00018 Score=48.07 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++|+|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 316
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.23 E-value=0.00014 Score=55.01 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998653
No 317
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.23 E-value=0.00017 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.23 E-value=6.2e-05 Score=61.07 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=27.9
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.++++.++.| +.|+||+|+|||||++++++..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 445566666766 7899999999999999999864
No 319
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.23 E-value=0.00016 Score=50.75 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+++.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
No 320
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00019 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998743
No 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.22 E-value=0.00016 Score=55.11 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCc--EEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 62 PDR--IMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 62 ~g~--~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
.+. .+.|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 446 8999999999999999999987754
No 322
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.22 E-value=0.00019 Score=49.44 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++++|+.|+|||||++.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999875
No 323
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.22 E-value=0.0002 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++.-+.|.||+|+|||||++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56788999999999999999999854
No 324
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.22 E-value=0.00019 Score=48.42 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 325
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.21 E-value=0.00024 Score=54.27 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=26.1
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.-+++|+++.|.||+|+|||||+..++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 46899999999999999999999988864
No 326
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00022 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 327
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.20 E-value=0.00017 Score=53.59 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998774
No 328
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.19 E-value=0.00021 Score=53.01 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999863
No 329
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.19 E-value=0.00039 Score=53.75 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=30.3
Q ss_pred ceeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 50 KKLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 50 ~~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
...++...+.+ .|.-++|+|+||+|||||...|...
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 34678877777 6788999999999999999999873
No 330
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.19 E-value=0.00028 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
....+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999998754
No 331
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.19 E-value=0.00021 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999875
No 332
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.18 E-value=0.00022 Score=51.38 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
No 333
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.18 E-value=0.00023 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-+++|.|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
No 334
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.18 E-value=0.00019 Score=49.81 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 335
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.18 E-value=0.00021 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999854
No 336
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.18 E-value=0.00021 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~g 85 (122)
-+++|.|++||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 337
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.17 E-value=0.00021 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998643
No 338
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.17 E-value=0.00025 Score=48.59 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
No 339
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.00022 Score=49.52 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+++-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999766653
No 340
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.16 E-value=0.00022 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 341
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.16 E-value=0.00024 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 342
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00019 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 343
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.16 E-value=0.00023 Score=48.99 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
No 344
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.16 E-value=0.00022 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 345
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.16 E-value=0.00038 Score=54.69 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-.++|+|.+|+|||||++.|++-
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999983
No 346
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.16 E-value=0.00023 Score=52.98 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..+.|.||+|+||||++++|+..+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 57899999999999999999987644
No 347
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.15 E-value=0.00021 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 348
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.15 E-value=0.00026 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
No 349
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.14 E-value=0.00025 Score=48.40 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 350
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.14 E-value=0.00015 Score=54.95 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=18.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.-+++|.|++||||||+.+.|+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
No 351
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.14 E-value=0.00026 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999853
No 352
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00029 Score=51.63 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
++-+++|.|++||||||+.+.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455899999999999999999974
No 353
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.13 E-value=0.00026 Score=49.57 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++|+|++|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 354
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.13 E-value=0.00027 Score=50.35 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999863
No 355
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.00023 Score=49.17 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 356
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.12 E-value=0.00028 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 357
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.12 E-value=0.00025 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 358
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.12 E-value=0.00025 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 359
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00025 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.601 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-.++|+|+.|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999875
No 360
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.12 E-value=0.00029 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
No 361
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.11 E-value=0.00027 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 362
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.11 E-value=0.00028 Score=52.52 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.11 E-value=0.00026 Score=49.48 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 364
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.10 E-value=0.00014 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 365
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.10 E-value=0.0003 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 366
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.10 E-value=0.00027 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 367
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.10 E-value=0.00035 Score=48.98 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+.|.||+|+|||||+++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997653
No 368
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00032 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 369
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00028 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 370
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.09 E-value=0.00029 Score=49.36 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 371
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.09 E-value=0.00029 Score=48.57 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 372
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.09 E-value=0.0003 Score=52.47 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 373
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.0003 Score=48.25 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.08 E-value=0.00033 Score=50.12 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998643
No 375
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.07 E-value=0.00032 Score=48.57 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 376
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.07 E-value=0.00028 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 377
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.07 E-value=0.0003 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 378
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.07 E-value=0.00025 Score=55.70 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
No 379
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.07 E-value=0.00037 Score=49.08 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
No 380
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.06 E-value=0.0003 Score=49.13 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 381
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.06 E-value=0.00033 Score=48.47 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 382
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.05 E-value=0.0003 Score=48.88 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 383
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.05 E-value=0.00034 Score=48.34 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 384
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.04 E-value=0.00034 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|..|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 385
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.04 E-value=0.00033 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
No 386
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.04 E-value=0.00035 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998743
No 387
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.04 E-value=0.00042 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.03 E-value=0.0004 Score=54.97 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999864
No 389
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.03 E-value=0.00045 Score=46.85 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.03 E-value=0.00041 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999999854
No 391
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.02 E-value=0.00025 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 392
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00044 Score=50.94 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=24.6
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+.++.-+.|.||+|+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566789999999999999999997653
No 393
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.02 E-value=0.0005 Score=49.72 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
No 394
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00036 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.00 E-value=0.00043 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 396
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.00 E-value=0.00039 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 397
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.00 E-value=0.00038 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999753
No 398
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.00 E-value=0.0004 Score=48.11 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5899999999999999888764
No 399
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.99 E-value=0.00057 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.5
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHh
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALA 84 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~ 84 (122)
.=+++|+++.|.|++|+|||||+-.++
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 358999999999999999999976544
No 400
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.99 E-value=0.00037 Score=47.33 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
....+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35567899999999999999998754
No 401
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.00056 Score=47.77 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.|.||+|+|||||++.++..+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
No 402
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.98 E-value=0.00048 Score=52.20 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=25.4
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.-+++|+++.|.|++|+|||||+..++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999988874
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.98 E-value=0.00043 Score=54.02 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999754
No 404
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.00033 Score=52.85 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..+.|.||+|+|||||+++++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4578899999999999999999865
No 405
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.97 E-value=0.00058 Score=53.27 Aligned_cols=27 Identities=33% Similarity=0.662 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+.+++|+||+|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999997653
No 406
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.97 E-value=0.00044 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999763
No 407
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.96 E-value=0.00053 Score=49.75 Aligned_cols=27 Identities=44% Similarity=0.618 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.|-+++|.|++||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 408
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.96 E-value=0.00027 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=9.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.95 E-value=0.00077 Score=49.22 Aligned_cols=35 Identities=29% Similarity=0.177 Sum_probs=27.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++.....+ .|..++|+||+|+|||||...|+...
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 455544443 56789999999999999999998754
No 410
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.94 E-value=0.00046 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 411
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.93 E-value=0.00051 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 412
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.93 E-value=0.00052 Score=48.66 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.++|+|.+|+|||||++.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988653
No 413
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.93 E-value=0.0006 Score=50.40 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.|.+++|.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
No 414
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.92 E-value=0.00059 Score=51.98 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=30.1
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
..|+.+..-+.+|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35666766799999999999999999999888774
No 415
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.92 E-value=0.00048 Score=47.55 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 416
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.92 E-value=0.00053 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++++|++|+|||||++.|.+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 417
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.91 E-value=0.0006 Score=49.09 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 418
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.89 E-value=0.00051 Score=50.52 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=22.0
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+|-+++|.|++||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999987654
No 419
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.89 E-value=0.00025 Score=50.01 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00056 Score=50.00 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.3
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+....++.|+||.||||+|..+.|+-.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455568899999999999999999854
No 421
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.87 E-value=0.00048 Score=54.89 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 422
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.86 E-value=0.00045 Score=47.53 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~g 85 (122)
-.++|+|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999975
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.86 E-value=0.00073 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
....-+.|.||+|+|||||+++++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344557899999999999999998754
No 424
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.86 E-value=0.00067 Score=49.18 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5688999999999999999999765
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.85 E-value=0.00076 Score=48.99 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.|.+++|.|++||||||+++.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987664
No 426
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.85 E-value=0.00063 Score=52.68 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999754
No 427
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.85 E-value=0.0006 Score=48.36 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-+++|+|++||||||+.+.|+..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998743
No 428
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.85 E-value=0.00067 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=28.6
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++.+ +.+-.|+.++|+|++|+|||||++.|+...
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 456789999999999999999999998754
No 429
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.00058 Score=48.58 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|+.|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 430
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.83 E-value=0.00064 Score=47.69 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999864
No 431
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.82 E-value=0.00047 Score=50.72 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 466799999999999999999998765
No 432
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.81 E-value=0.00027 Score=49.03 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=4.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.81 E-value=0.00078 Score=52.26 Aligned_cols=25 Identities=40% Similarity=0.686 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.+++|+||+|||||||...|+..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3478999999999999999998754
No 434
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.78 E-value=0.0008 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.585 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
-.++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998654
No 435
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.78 E-value=0.00073 Score=47.50 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998885
No 436
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.78 E-value=0.00093 Score=48.73 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcCC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLSK 89 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~~ 89 (122)
..|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999987653
No 437
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.77 E-value=0.00078 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 438
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.76 E-value=0.00098 Score=48.92 Aligned_cols=28 Identities=36% Similarity=0.391 Sum_probs=24.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..|.+++|.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577999999999999999999987553
No 439
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.0009 Score=48.30 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
++.|+||.||||+|..+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999854
No 440
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.76 E-value=0.00078 Score=47.22 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 441
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.76 E-value=0.00065 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999865
No 442
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.74 E-value=0.00024 Score=60.76 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=28.4
Q ss_pred eEEEcCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 57 TGYAQPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 57 s~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
++.+.++..+.|.||+|+|||||.++|++.+.
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 55678888999999999999999999998764
No 443
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.70 E-value=0.001 Score=46.05 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.|.||.|+|||||++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998753
No 444
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.69 E-value=0.0013 Score=51.37 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=25.1
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-+++|+++.|.|++|+|||||...++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999887754
No 445
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0009 Score=50.35 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=26.3
Q ss_pred eEeeceEEEcCC--cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPD--RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g--~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+++.+...+..| ..+.|.||+|+||||++++++..+
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 334444444444 338999999999999999999864
No 446
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.65 E-value=0.0009 Score=50.63 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999765
No 447
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.65 E-value=0.0012 Score=44.30 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+.-+.|.||+|+|||++.++|+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 455668899999999999999999764
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.64 E-value=0.0011 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++|+||+|||||||...|+..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 478999999999999999998654
No 449
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.62 E-value=0.0014 Score=48.64 Aligned_cols=26 Identities=38% Similarity=0.601 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++.-+.|.||+|+|||+|.++++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999888755
No 450
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.60 E-value=0.0012 Score=52.69 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+++|+||+|||||||...|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 451
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.59 E-value=0.0011 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 452
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.57 E-value=0.00054 Score=50.06 Aligned_cols=22 Identities=41% Similarity=0.806 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcCc
Q 033293 66 MAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 66 ~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.|.||+|+|||+|+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999743
No 453
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.55 E-value=0.00063 Score=52.91 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=30.2
Q ss_pred eeEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 51 KLINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 51 ~il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
..|+.+..-+.+|+++.|.|++|+|||||+..++..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345666667899999999999999999999888764
No 454
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.54 E-value=0.0018 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHH
Q 033293 62 PDRIMAIMGPSGSGKSTLL-DAL 83 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl-~~L 83 (122)
+|.++.+.||.|+||||++ +.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999997 444
No 455
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.54 E-value=0.0014 Score=51.99 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.|+.+..-+.+|+++.|.|++|+|||||+..++...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456666668999999999999999999998887643
No 456
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.53 E-value=0.001 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.51 E-value=0.0015 Score=48.00 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..-+.|.||+|+|||+|+++++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34468899999999999999998753
No 458
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.50 E-value=0.0018 Score=49.24 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.++..+.|.||+|+|||+|++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999997654
No 459
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.49 E-value=0.00031 Score=49.01 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998743
No 460
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.48 E-value=0.0016 Score=49.31 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
-.++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999998765
No 461
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.48 E-value=0.0017 Score=48.88 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+|+|||||++.|.|..
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEecCCCchHHHHHHHhcCc
Confidence 68999999999999999999864
No 462
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.48 E-value=0.00088 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.767 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHH-Hhc
Q 033293 65 IMAIMGPSGSGKSTLLDA-LAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~-L~g 85 (122)
.++|+|+.|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 544
No 463
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.47 E-value=0.0015 Score=50.41 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.-+++|+|+.|+|||||+..|+..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998654
No 464
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.47 E-value=0.0016 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+++|||||++.|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999854
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.46 E-value=0.0039 Score=44.65 Aligned_cols=33 Identities=24% Similarity=0.050 Sum_probs=24.6
Q ss_pred eEeeceEEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 52 LINGLTGYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 52 il~~is~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++..... ..|.-+.|.|+||+|||||...|..
T Consensus 6 ~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44444433 4466789999999999999988865
No 466
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.47 E-value=0.00046 Score=48.21 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 033293 65 IMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~g 85 (122)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988875
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0022 Score=48.88 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+..-+.|.||+|+|||+|+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678899999999999999999765
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.43 E-value=0.0018 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.-+.|.||+|+|||+|+++++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999765
No 469
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.002 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999754
No 470
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0018 Score=49.64 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
++.-+.|.||+|+|||++.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999755
No 471
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.40 E-value=0.0019 Score=50.27 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=25.1
Q ss_pred EEEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 58 GYAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 58 ~~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
.-+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5678888899999999999999999874
No 472
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.39 E-value=0.0023 Score=48.62 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999754
No 473
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.38 E-value=0.0024 Score=48.47 Aligned_cols=25 Identities=40% Similarity=0.534 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+.-+.|.||+|+|||+|+.+|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999998754
No 474
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.38 E-value=0.0018 Score=53.10 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.++|+|..|+|||||++.|.|..
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999853
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.36 E-value=0.0024 Score=45.95 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
|.+++|=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 476
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.36 E-value=0.0026 Score=48.13 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
+..-+.|.||+|+|||+|+++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568899999999999999999754
No 477
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.35 E-value=0.0027 Score=48.93 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+..-+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 345678999999999999999999754
No 478
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.31 E-value=0.0018 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
|-.++|+|++|+|||||++.|++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 445899999999999999999984
No 479
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.30 E-value=0.0023 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+.|.||+|+|||+|++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999987653
No 480
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.30 E-value=0.0028 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
|..+.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999998753
No 481
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.28 E-value=0.0022 Score=53.41 Aligned_cols=24 Identities=42% Similarity=0.638 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
-.++|+|+.++|||||++.|+|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999964
No 482
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.25 E-value=0.0032 Score=49.28 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=24.3
Q ss_pred EEcCCcEEEEEcCCCCcHHHHHHHHhc
Q 033293 59 YAQPDRIMAIMGPSGSGKSTLLDALAG 85 (122)
Q Consensus 59 ~i~~g~~~~IiG~nGsGKSTLl~~L~g 85 (122)
-+++|+++.|.|++|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999877764
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.23 E-value=0.003 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+||+|+.||||||+.+.|+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999764
No 484
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.22 E-value=0.0017 Score=43.60 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=22.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
..+.-+.|.||+|+|||++.++|+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 445568899999999999999998653
No 485
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.22 E-value=0.0029 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++++|+.|+|||||++.|.+..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999854
No 486
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.22 E-value=0.0023 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.+..++++|.+|+|||||++.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4557899999999999999999986
No 487
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.20 E-value=0.0028 Score=48.79 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
...+.|.||+|+||||+.++|+..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999999999765
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.20 E-value=0.0018 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 64 RIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 64 ~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+++|+|++|+||||++..|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998653
No 489
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.18 E-value=0.0027 Score=51.90 Aligned_cols=28 Identities=11% Similarity=0.022 Sum_probs=24.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+.|-.+.|+|.+||||||+-+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999998764
No 490
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.17 E-value=0.0031 Score=50.78 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
+..+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999996554
No 491
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.17 E-value=0.0031 Score=52.83 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+.++.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 492
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.16 E-value=0.0032 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+++|||||++.|.+-.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.15 E-value=0.0033 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCc
Q 033293 65 IMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.++|+|.+|+|||||++.|.+-.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 494
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.15 E-value=0.0031 Score=53.12 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCc
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRL 87 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~ 87 (122)
.+-.++|+|+.|+|||||+++|+|..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44469999999999999999999853
No 495
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.14 E-value=0.0034 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
.+-++.|.|.+||||||+.+.|+..+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999987643
No 496
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.14 E-value=0.0024 Score=49.75 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 62 PDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 62 ~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
++..++++|.+|+|||||++.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 4567899999999999999999985
No 497
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.12 E-value=0.0019 Score=55.02 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.5
Q ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 60 AQPDRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 60 i~~g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
+..|+.+.|+||+||||||++.+++..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999998888654
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.11 E-value=0.0033 Score=45.89 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHhcCcC
Q 033293 61 QPDRIMAIMGPSGSGKSTLLDALAGRLS 88 (122)
Q Consensus 61 ~~g~~~~IiG~nGsGKSTLl~~L~gl~~ 88 (122)
..+.-+.|.||+|+|||+|+++|+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3456788999999999999999997654
No 499
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.11 E-value=0.0037 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 033293 65 IMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 65 ~~~IiG~nGsGKSTLl~~L~gl 86 (122)
.++|+|.+++|||||++.|.+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 500
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.07 E-value=0.0024 Score=51.65 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=19.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q 033293 63 DRIMAIMGPSGSGKSTLLDALAGR 86 (122)
Q Consensus 63 g~~~~IiG~nGsGKSTLl~~L~gl 86 (122)
|=.++|+|++|+|||||++.|++.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335899999999999999999986
Done!