Query 033295
Match_columns 122
No_of_seqs 126 out of 1864
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 12:10:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.7E-33 3.7E-38 218.2 5.6 111 1-119 30-157 (371)
2 PRK14296 chaperone protein Dna 99.9 3.8E-28 8.2E-33 190.2 5.4 109 1-118 30-163 (372)
3 PRK14288 chaperone protein Dna 99.9 7.7E-28 1.7E-32 188.3 6.8 109 1-117 29-153 (369)
4 PRK14286 chaperone protein Dna 99.9 1.2E-27 2.5E-32 187.4 5.7 111 1-119 30-165 (372)
5 PRK14285 chaperone protein Dna 99.9 4.4E-27 9.6E-32 183.8 6.0 111 1-119 29-161 (365)
6 PRK14287 chaperone protein Dna 99.9 4.5E-27 9.7E-32 184.1 5.5 109 1-118 30-152 (371)
7 PRK14298 chaperone protein Dna 99.9 8.8E-27 1.9E-31 182.8 5.4 110 1-119 31-156 (377)
8 PRK14276 chaperone protein Dna 99.9 1.2E-26 2.7E-31 182.1 5.9 110 1-119 30-161 (380)
9 PRK14297 chaperone protein Dna 99.9 1.3E-26 2.9E-31 181.9 6.0 110 1-118 30-162 (380)
10 PRK14279 chaperone protein Dna 99.9 1.6E-26 3.4E-31 182.2 5.3 110 1-118 35-187 (392)
11 PRK14278 chaperone protein Dna 99.9 2.2E-26 4.7E-31 180.6 6.0 110 1-119 29-154 (378)
12 KOG0712 Molecular chaperone (D 99.9 7.8E-27 1.7E-31 179.1 3.1 108 1-120 30-143 (337)
13 PRK14301 chaperone protein Dna 99.9 5.9E-26 1.3E-30 177.9 7.1 110 1-118 30-158 (373)
14 PRK14277 chaperone protein Dna 99.9 4.7E-26 1E-30 179.2 6.0 110 1-118 31-169 (386)
15 PRK14280 chaperone protein Dna 99.9 4E-26 8.7E-31 179.0 5.5 109 1-118 30-157 (376)
16 PRK14294 chaperone protein Dna 99.9 1E-25 2.2E-30 176.2 5.9 110 1-118 30-158 (366)
17 PRK14282 chaperone protein Dna 99.9 9.3E-26 2E-30 176.6 5.7 111 1-118 30-166 (369)
18 PRK14295 chaperone protein Dna 99.9 1.3E-25 2.8E-30 176.8 5.1 111 1-119 35-181 (389)
19 PTZ00037 DnaJ_C chaperone prot 99.9 1.8E-25 3.8E-30 177.4 5.8 105 1-117 54-163 (421)
20 PRK10767 chaperone protein Dna 99.9 2.2E-25 4.9E-30 174.5 6.0 110 1-118 30-156 (371)
21 PRK14284 chaperone protein Dna 99.9 2.2E-25 4.7E-30 175.6 4.7 111 1-119 27-173 (391)
22 TIGR02349 DnaJ_bact chaperone 99.9 9.3E-25 2E-29 170.0 5.9 109 1-118 26-157 (354)
23 PRK14291 chaperone protein Dna 99.9 1E-24 2.2E-29 171.4 6.1 110 1-119 29-171 (382)
24 PRK14290 chaperone protein Dna 99.9 2E-24 4.3E-29 168.9 7.2 111 1-118 29-163 (365)
25 PRK14283 chaperone protein Dna 99.9 7.4E-25 1.6E-29 171.9 4.4 109 1-118 31-160 (378)
26 PRK14281 chaperone protein Dna 99.9 1.5E-24 3.2E-29 171.2 5.9 110 1-118 29-177 (397)
27 PRK14292 chaperone protein Dna 99.9 9.3E-24 2E-28 165.4 6.2 109 1-118 28-153 (371)
28 PRK14300 chaperone protein Dna 99.9 9.8E-24 2.1E-28 165.3 5.6 109 1-118 29-159 (372)
29 PRK14289 chaperone protein Dna 99.9 1.7E-23 3.7E-28 164.7 5.5 109 1-117 31-167 (386)
30 PRK14293 chaperone protein Dna 99.9 2.6E-23 5.6E-28 163.0 6.1 109 1-118 29-157 (374)
31 KOG0715 Molecular chaperone (D 99.8 2.5E-20 5.4E-25 141.8 4.5 111 1-120 69-180 (288)
32 KOG0713 Molecular chaperone (D 99.8 2.5E-20 5.4E-25 142.4 3.3 89 1-93 42-146 (336)
33 PRK14299 chaperone protein Dna 99.8 1E-19 2.2E-24 138.6 4.8 94 1-99 30-155 (291)
34 PRK10266 curved DNA-binding pr 99.8 3.6E-19 7.9E-24 136.4 4.3 96 1-101 30-145 (306)
35 KOG0691 Molecular chaperone (D 99.5 1.1E-14 2.5E-19 110.8 3.4 44 1-48 31-74 (296)
36 KOG0717 Molecular chaperone (D 99.5 1.1E-14 2.3E-19 115.3 1.4 42 1-45 34-75 (508)
37 KOG0719 Molecular chaperone (D 99.4 1.3E-13 2.7E-18 101.3 3.8 63 1-65 40-104 (264)
38 KOG0718 Molecular chaperone (D 99.4 2E-13 4.4E-18 108.3 2.4 48 2-50 36-83 (546)
39 KOG0716 Molecular chaperone (D 99.4 2.3E-13 4.9E-18 101.7 1.8 42 1-46 57-98 (279)
40 PTZ00341 Ring-infected erythro 99.3 1.1E-12 2.4E-17 111.6 3.8 45 1-50 599-643 (1136)
41 PF00226 DnaJ: DnaJ domain; I 99.1 2.1E-11 4.5E-16 73.0 1.5 39 1-42 26-64 (64)
42 PHA03102 Small T antigen; Revi 99.1 7.3E-11 1.6E-15 82.4 3.1 58 1-66 33-90 (153)
43 TIGR03835 termin_org_DnaJ term 99.0 3.1E-10 6.8E-15 95.1 3.6 44 1-49 28-71 (871)
44 COG2214 CbpA DnaJ-class molecu 98.9 3.2E-10 6.9E-15 80.9 2.1 41 1-44 32-72 (237)
45 PRK01356 hscB co-chaperone Hsc 98.9 2.5E-10 5.5E-15 80.8 1.0 43 1-44 30-72 (166)
46 PRK00294 hscB co-chaperone Hsc 98.9 4.8E-10 1E-14 79.9 2.0 43 1-43 32-75 (173)
47 PRK05014 hscB co-chaperone Hsc 98.9 5.5E-10 1.2E-14 79.4 2.1 44 1-44 29-73 (171)
48 TIGR00714 hscB Fe-S protein as 98.9 9E-10 1.9E-14 77.3 2.3 44 1-44 17-61 (157)
49 KOG0624 dsRNA-activated protei 98.8 1.3E-09 2.9E-14 84.9 1.6 45 1-46 420-464 (504)
50 KOG0720 Molecular chaperone (D 98.8 2.6E-09 5.6E-14 85.0 2.9 41 2-47 262-302 (490)
51 PRK03578 hscB co-chaperone Hsc 98.8 2.4E-09 5.3E-14 76.4 1.8 43 1-43 34-77 (176)
52 KOG0714 Molecular chaperone (D 98.8 4.2E-09 9.2E-14 78.3 2.4 43 1-46 29-71 (306)
53 COG5269 ZUO1 Ribosome-associat 98.7 1.6E-08 3.4E-13 76.4 5.2 67 1-69 72-143 (379)
54 smart00271 DnaJ DnaJ molecular 98.6 2.6E-08 5.6E-13 58.5 2.6 34 1-37 27-60 (60)
55 KOG0550 Molecular chaperone (D 98.6 2.2E-08 4.7E-13 79.3 2.6 42 1-45 399-440 (486)
56 cd06257 DnaJ DnaJ domain or J- 98.5 4.4E-08 9.5E-13 56.4 2.1 30 1-34 26-55 (55)
57 KOG0721 Molecular chaperone (D 98.5 5.6E-08 1.2E-12 71.0 2.9 45 1-49 125-169 (230)
58 KOG0722 Molecular chaperone (D 98.4 6.7E-08 1.4E-12 72.4 0.7 40 1-45 59-98 (329)
59 PRK01773 hscB co-chaperone Hsc 98.4 1.2E-07 2.6E-12 67.6 1.8 42 2-43 31-73 (173)
60 PHA02624 large T antigen; Prov 98.1 2.4E-06 5.2E-11 71.0 3.2 33 1-41 39-71 (647)
61 COG5407 SEC63 Preprotein trans 97.6 3.3E-05 7.2E-10 62.1 2.7 49 1-49 124-173 (610)
62 KOG1789 Endocytosis protein RM 97.0 0.00043 9.4E-09 61.0 2.2 27 1-34 1311-1337(2235)
63 KOG3192 Mitochondrial J-type c 96.8 0.00078 1.7E-08 47.2 2.1 41 2-43 37-79 (168)
64 KOG1150 Predicted molecular ch 96.6 0.0018 3.8E-08 47.4 3.0 36 2-40 80-115 (250)
65 COG1076 DjlA DnaJ-domain-conta 95.8 0.0032 7E-08 44.7 0.8 46 1-46 29-75 (174)
66 TIGR03835 termin_org_DnaJ term 89.4 0.19 4.1E-06 43.5 1.4 27 75-101 658-684 (871)
67 KOG0568 Molecular chaperone (D 88.6 0.29 6.4E-06 36.8 1.8 28 2-34 74-102 (342)
68 PF07709 SRR: Seven Residue Re 83.5 0.86 1.9E-05 19.0 1.2 13 21-33 2-14 (14)
69 PF07092 DUF1356: Protein of u 79.1 1 2.2E-05 33.7 1.2 15 105-119 39-53 (238)
70 PF14687 DUF4460: Domain of un 77.4 1.6 3.4E-05 29.0 1.5 36 1-36 20-55 (112)
71 COG5216 Uncharacterized conser 73.7 1.5 3.3E-05 25.9 0.7 21 80-111 31-51 (67)
72 PF06975 DUF1299: Protein of u 62.9 2.5 5.5E-05 23.1 0.1 11 26-36 10-20 (47)
73 PLN03165 chaperone protein dna 60.8 7.1 0.00015 25.9 1.9 14 105-118 42-55 (111)
74 PF01556 CTDII: DnaJ C termina 56.9 3 6.6E-05 25.5 -0.3 21 76-96 2-22 (81)
75 KOG0724 Zuotin and related mol 56.2 7.4 0.00016 30.1 1.7 26 18-43 35-60 (335)
76 PF15288 zf-CCHC_6: Zinc knuck 55.3 8.2 0.00018 20.9 1.3 18 105-122 2-19 (40)
77 KOG2813 Predicted molecular ch 53.9 7.1 0.00015 30.8 1.2 17 105-121 246-262 (406)
78 PRK06835 DNA replication prote 50.0 9.1 0.0002 29.9 1.3 16 106-121 100-115 (329)
79 KOG2923 Uncharacterized conser 48.8 10 0.00023 22.7 1.1 21 80-111 31-51 (67)
80 PRK09430 djlA Dna-J like membr 47.5 18 0.0004 27.3 2.6 9 1-9 226-234 (267)
81 PF04949 Transcrip_act: Transc 47.5 19 0.0004 25.3 2.3 25 16-40 62-86 (159)
82 PRK14291 chaperone protein Dna 47.2 9.3 0.0002 30.4 1.0 25 73-97 274-298 (382)
83 PRK14284 chaperone protein Dna 46.7 9.2 0.0002 30.5 0.9 25 73-97 277-301 (391)
84 COG0484 DnaJ DnaJ-class molecu 46.3 14 0.00029 29.6 1.7 14 105-118 184-197 (371)
85 PRK14282 chaperone protein Dna 45.0 10 0.00022 30.0 0.9 25 73-97 275-299 (369)
86 PRK14299 chaperone protein Dna 41.5 12 0.00026 28.6 0.7 25 73-97 200-224 (291)
87 PF00684 DnaJ_CXXCXGXG: DnaJ c 40.0 21 0.00046 21.0 1.5 13 105-117 42-54 (66)
88 PRK14279 chaperone protein Dna 39.8 14 0.0003 29.6 0.9 25 73-97 292-316 (392)
89 PRK14295 chaperone protein Dna 39.4 15 0.00033 29.3 1.1 24 73-96 285-308 (389)
90 TIGR02642 phage_xxxx uncharact 38.6 15 0.00033 26.5 0.8 12 105-116 100-111 (186)
91 PRK14276 chaperone protein Dna 37.5 16 0.00034 29.0 0.9 25 73-97 269-293 (380)
92 TIGR02349 DnaJ_bact chaperone 37.4 16 0.00034 28.6 0.8 23 73-95 266-288 (354)
93 PRK14287 chaperone protein Dna 37.0 18 0.00039 28.7 1.1 25 73-97 261-285 (371)
94 PRK14300 chaperone protein Dna 37.0 17 0.00037 28.8 1.0 25 73-97 264-288 (372)
95 PRK14280 chaperone protein Dna 36.8 17 0.00037 28.8 1.0 24 73-96 266-289 (376)
96 cd01390 HMGB-UBF_HMG-box HMGB- 36.6 26 0.00057 19.8 1.6 25 18-42 28-52 (66)
97 PRK14294 chaperone protein Dna 36.1 18 0.00038 28.6 1.0 24 73-96 263-286 (366)
98 PRK14285 chaperone protein Dna 35.9 18 0.0004 28.6 1.0 25 73-97 265-289 (365)
99 cd01388 SOX-TCF_HMG-box SOX-TC 35.6 29 0.00062 20.5 1.6 26 18-43 29-54 (72)
100 TIGR00757 RNaseEG ribonuclease 35.5 24 0.00051 28.6 1.6 14 105-118 391-404 (414)
101 PRK14281 chaperone protein Dna 34.3 19 0.00042 28.8 0.9 25 73-97 285-309 (397)
102 PRK14288 chaperone protein Dna 34.2 18 0.0004 28.6 0.8 24 73-96 257-280 (369)
103 PRK14298 chaperone protein Dna 34.1 18 0.00039 28.7 0.7 25 73-97 264-288 (377)
104 PRK14290 chaperone protein Dna 33.9 19 0.00042 28.4 0.9 25 73-97 269-293 (365)
105 KOG3960 Myogenic helix-loop-he 33.9 28 0.00062 26.5 1.7 13 20-32 128-140 (284)
106 PF08094 Toxin_24: Conotoxin T 33.4 25 0.00055 17.7 0.9 13 110-122 2-14 (33)
107 PRK14297 chaperone protein Dna 32.6 21 0.00045 28.3 0.9 25 73-97 271-295 (380)
108 PRK14278 chaperone protein Dna 32.3 23 0.00049 28.2 1.0 24 73-96 262-285 (378)
109 PRK10266 curved DNA-binding pr 32.3 21 0.00046 27.4 0.8 25 73-97 208-232 (306)
110 PF14369 zf-RING_3: zinc-finge 32.2 51 0.0011 17.0 2.0 22 91-112 8-29 (35)
111 PRK14286 chaperone protein Dna 31.9 21 0.00046 28.2 0.8 24 73-96 269-292 (372)
112 PRK10767 chaperone protein Dna 31.6 23 0.00049 28.0 0.9 23 73-95 261-283 (371)
113 PRK11712 ribonuclease G; Provi 31.3 35 0.00076 28.3 2.0 14 105-118 403-416 (489)
114 PRK14277 chaperone protein Dna 30.8 25 0.00054 28.0 1.0 24 73-96 278-301 (386)
115 PRK14292 chaperone protein Dna 30.0 28 0.0006 27.5 1.1 24 73-96 261-284 (371)
116 PRK14301 chaperone protein Dna 29.9 26 0.00056 27.8 1.0 24 73-96 263-286 (373)
117 PTZ00037 DnaJ_C chaperone prot 29.7 23 0.00051 28.7 0.7 24 73-96 273-296 (421)
118 PRK14289 chaperone protein Dna 29.7 28 0.0006 27.7 1.1 25 73-97 277-301 (386)
119 PRK14293 chaperone protein Dna 27.8 27 0.00059 27.6 0.8 25 73-97 266-290 (374)
120 PRK14283 chaperone protein Dna 27.5 30 0.00065 27.4 0.9 24 73-96 269-292 (378)
121 PRK14296 chaperone protein Dna 26.5 33 0.00071 27.2 1.0 23 74-96 274-296 (372)
122 KOG2577 Transcription factor E 26.3 31 0.00068 27.4 0.8 18 25-43 94-111 (354)
123 PF02319 E2F_TDP: E2F/DP famil 26.1 24 0.00052 21.1 0.1 18 26-43 28-49 (71)
124 COG0178 UvrA Excinuclease ATPa 25.7 33 0.00071 30.6 0.9 20 94-116 723-742 (935)
125 TIGR00630 uvra excinuclease AB 23.6 37 0.0008 30.4 0.9 22 93-117 728-749 (924)
126 cd00084 HMG-box High Mobility 23.4 61 0.0013 18.0 1.6 25 18-42 28-52 (66)
127 cd08071 MPN_DUF2466 Mov34/MPN/ 22.0 1.5E+02 0.0033 19.2 3.4 28 3-33 68-95 (113)
128 PF07710 P53_tetramer: P53 tet 21.7 76 0.0016 17.3 1.6 17 17-33 19-35 (42)
129 PF12098 DUF3574: Protein of u 21.4 1.1E+02 0.0024 20.0 2.6 21 3-31 66-86 (104)
130 smart00398 HMG high mobility g 21.3 74 0.0016 17.9 1.6 25 18-42 29-53 (70)
131 PRK06921 hypothetical protein; 20.7 40 0.00087 25.4 0.5 12 105-116 33-44 (266)
132 KOG1559 Gamma-glutamyl hydrola 20.5 58 0.0013 25.0 1.3 8 2-9 265-272 (340)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.7e-33 Score=218.17 Aligned_cols=111 Identities=30% Similarity=0.386 Sum_probs=92.2
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-c--------ch-hHHHHHHHHhhhcc--
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-E--------DE-DFYGFVQEMVSMMN-- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-~--------~~-~~~~~f~~~f~~~~-- 68 (122)
+|||||+|+.++ +|+++|++|++||||||||+||+.||+++...+.+ + +. +|.|+|++||++..
T Consensus 30 ~kyHPD~n~g~~----~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g~~~fgg~~~DIF~~~FgGg~~~ 105 (371)
T COG0484 30 KKYHPDRNPGDK----EAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGDIFEDFFGGGGGG 105 (371)
T ss_pred HHhCCCCCCCCH----HHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCCcCCCCCCHHHHHHHhhcCCCcc
Confidence 589999976544 89999999999999999999999999987765431 1 11 47899999995332
Q ss_pred -----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 69 -----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 69 -----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
+++++.|+.+.|+|||+|||.|++++|.+++.. .|+.|.|+|+++++
T Consensus 106 ~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~----~C~~C~GsGak~gt 157 (371)
T COG0484 106 RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSV----TCSTCHGSGAKPGT 157 (371)
T ss_pred cCCCCCcccCCceEEEEEeEhhhhccCceeeEecceee----ECCcCCCCCCCCCC
Confidence 233566899999999999999999999997776 99999999999884
No 2
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=3.8e-28 Score=190.20 Aligned_cols=109 Identities=21% Similarity=0.277 Sum_probs=84.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------------------cchhHHHH
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------------------EDEDFYGF 59 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------------------~~~~~~~~ 59 (122)
++||||+|+ ++ +|+++|++|++||+|||||+||+.||+++...+.. +..+|.++
T Consensus 30 ~~~HPD~n~-~~----~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~d~ 104 (372)
T PRK14296 30 KQYHPDLNK-SP----DAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSSNFGDFEDLFSNMGSSGFSSFTNI 104 (372)
T ss_pred HHHCcCCCC-Cc----hHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCcCCCccccccccccccccccchhh
Confidence 589999975 34 68999999999999999999999999976532110 01235577
Q ss_pred HHHHhhhcc----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 60 VQEMVSMMN----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 60 f~~~f~~~~----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
|++||++.. +..++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..+
T Consensus 105 f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~ 163 (372)
T PRK14296 105 FSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLT----NCSKCFGSGAESN 163 (372)
T ss_pred hhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeee----ccCCCCCCccCCC
Confidence 888886421 123456899999999999999999999997766 8888888887654
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=7.7e-28 Score=188.31 Aligned_cols=109 Identities=31% Similarity=0.442 Sum_probs=82.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--c--------chhHHHHHHHHhhhcc--
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--E--------DEDFYGFVQEMVSMMN-- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~--------~~~~~~~f~~~f~~~~-- 68 (122)
++||||+|+.++ +|+++|++|++||+|||||+||++||++|...+.. + ...|.++|+++|++.+
T Consensus 29 ~k~HPD~~~~~~----~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~~~~~~~~f~~~~~~F~~~fg~g~~~ 104 (369)
T PRK14288 29 LKYHPDRNAGDK----EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQSDFSDFFEDLGSFFEDAFGFGARG 104 (369)
T ss_pred HHHCCCCCCCcc----HHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCCccccccchhhHHHHHHhhcCCCCcc
Confidence 589999975433 68999999999999999999999999977643321 0 1123445666665321
Q ss_pred ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295 69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR 117 (122)
Q Consensus 69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~ 117 (122)
+.+++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..
T Consensus 105 ~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~ 153 (369)
T PRK14288 105 SKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQS----VCESCDGTGAKD 153 (369)
T ss_pred cCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeec----cCCCCCCcccCC
Confidence 113456889999999999999999999997765 788888888765
No 4
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=1.2e-27 Score=187.45 Aligned_cols=111 Identities=22% Similarity=0.340 Sum_probs=86.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-------c--------chhHHHHHHHHhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-------E--------DEDFYGFVQEMVS 65 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-------~--------~~~~~~~f~~~f~ 65 (122)
++||||+|+.++ +|+++|++|++||+|||||+||+.||+++...+.. + ..+|.++|..||+
T Consensus 30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ffg 105 (372)
T PRK14286 30 IKYHPDKNKGNK----ESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFGQGAYTDFSDIFGDFGDIFGDFFG 105 (372)
T ss_pred HHHCcCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCCCCCcccccccccchhhHHHHhhC
Confidence 589999976433 78999999999999999999999999976543210 0 1245688888887
Q ss_pred hcc----------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 66 MMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 66 ~~~----------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
+.. ...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..+.
T Consensus 106 g~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~~ 165 (372)
T PRK14286 106 GGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLE----SCVDCNGSGASKGS 165 (372)
T ss_pred CCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccc----cCCCCcCCCcCCCC
Confidence 421 122456899999999999999999999997776 88999998876543
No 5
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.94 E-value=4.4e-27 Score=183.81 Aligned_cols=111 Identities=27% Similarity=0.366 Sum_probs=86.3
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------c-------chhHHHHHHHHh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------E-------DEDFYGFVQEMV 64 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------~-------~~~~~~~f~~~f 64 (122)
++||||+|+.++ +|.++|++|++||+|||||+||+.||+++...+.. + ..+|.++|++||
T Consensus 29 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~f~~~f 104 (365)
T PRK14285 29 IKYHPDKNKGNK----EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFF 104 (365)
T ss_pred HHHCCCCCCCCH----HHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccccCCCccccccccccHHHHHHHhh
Confidence 589999976433 78899999999999999999999999976543210 1 123668888888
Q ss_pred hhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 65 SMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 65 ~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
++.. ...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..+.
T Consensus 105 gg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~ 161 (365)
T PRK14285 105 TGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNM----LCESCLGKKSEKGT 161 (365)
T ss_pred cCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecc----cCCCCCCcccCCCC
Confidence 7421 123456899999999999999999999997776 88888888876543
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=4.5e-27 Score=184.10 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=86.0
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c---chhHHHHHHHHhhhcc----
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E---DEDFYGFVQEMVSMMN---- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~---~~~~~~~f~~~f~~~~---- 68 (122)
++||||+|+ ++ +|+++|++|++||+|||||+||++||+++...+.. + ..+|.++|+.||++.+
T Consensus 30 ~~~HpD~~~-~~----~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~~f~~~~d~f~~~fgg~~~~~~ 104 (371)
T PRK14287 30 RKYHPDVNK-AP----DAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRN 104 (371)
T ss_pred HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCccccchHHHHHhhhccccCCCC
Confidence 489999965 33 68899999999999999999999999977643221 1 1346688998887421
Q ss_pred --cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 --NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 --~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
...++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..+
T Consensus 105 ~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 152 (371)
T PRK14287 105 PNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREE----TCGTCHGSGAKPG 152 (371)
T ss_pred CCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeec----cCCCCCCcccCCC
Confidence 122456899999999999999999999997776 8888888887654
No 7
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=8.8e-27 Score=182.78 Aligned_cols=110 Identities=30% Similarity=0.417 Sum_probs=87.0
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----------cchhHHHHHHHHhhhcc-
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----------EDEDFYGFVQEMVSMMN- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----------~~~~~~~~f~~~f~~~~- 68 (122)
++||||+|+ ++ +|+++|++|++||+|||||+||+.||+++...... +..+|.++|+.||++..
T Consensus 31 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~d~f~~~Fgg~~~ 105 (377)
T PRK14298 31 MKYHPDKNK-EP----DAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFEMFFGGGGR 105 (377)
T ss_pred HHhCccccC-Ch----hHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccccccCCcCcchhhhHhhhcCCCc
Confidence 589999965 33 68899999999999999999999999976543221 11246688999987421
Q ss_pred ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..++
T Consensus 106 ~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~ 156 (377)
T PRK14298 106 RGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAE----RCSTCSGTGAKPGT 156 (377)
T ss_pred cCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeec----cCCCCCCCcccCCC
Confidence 123456899999999999999999999997776 89999998887654
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=1.2e-26 Score=182.09 Aligned_cols=110 Identities=26% Similarity=0.353 Sum_probs=86.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----------------cchhHHHHHHHHh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----------------EDEDFYGFVQEMV 64 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----------------~~~~~~~~f~~~f 64 (122)
++||||+|+ ++ +|+++|++|++||+|||||+||+.||+++...+.. +..+|.++|+.||
T Consensus 30 ~~~HpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~f 104 (380)
T PRK14276 30 KKYHPDINK-EP----GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGGFEDIFSSFF 104 (380)
T ss_pred HHHCcCCCC-Cc----CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCCCCCCccccccccchhhHHHHHh
Confidence 589999975 34 68899999999999999999999999976543210 0124668888888
Q ss_pred hhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 65 SMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 65 ~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
++.. ..+++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..+.
T Consensus 105 gg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~~ 161 (380)
T PRK14276 105 GGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREA----TCHTCNGSGAKPGT 161 (380)
T ss_pred CccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccc----cCCCCcCcccCCCC
Confidence 7421 122456899999999999999999999997776 89999999987643
No 9
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=1.3e-26 Score=181.91 Aligned_cols=110 Identities=27% Similarity=0.376 Sum_probs=85.2
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-------c--------chhHHHHHHHHhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-------E--------DEDFYGFVQEMVS 65 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-------~--------~~~~~~~f~~~f~ 65 (122)
++||||+|+.++ +|+++|++|++||+||+||++|+.||+++...+.. + ..+|.++|+.||+
T Consensus 30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg 105 (380)
T PRK14297 30 IKYHPDKNKGNK----EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFG 105 (380)
T ss_pred HHHCcCCCCCcH----HHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCCCCCCcCcccccchhHHHHHHhc
Confidence 489999975333 78999999999999999999999999976543210 0 0135688888887
Q ss_pred hc--c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 66 MM--N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 66 ~~--~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
+. + ...++.|+.++|.|||+|+|+|++++|.+++.+ .|..|+|+|...+
T Consensus 106 g~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 162 (380)
T PRK14297 106 GGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNE----NCETCNGTGAKPG 162 (380)
T ss_pred cCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeec----cCCCcccccccCC
Confidence 41 1 112455899999999999999999999997776 7888888887654
No 10
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=1.6e-26 Score=182.17 Aligned_cols=110 Identities=24% Similarity=0.319 Sum_probs=81.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC----CCc----------cc--------ch----
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD----PLE----------EE--------DE---- 54 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~----~~~----------~~--------~~---- 54 (122)
++||||+|+.++ +|+++|++|++||+|||||+||++||+++.. .+. .+ ..
T Consensus 35 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~d~~~ 110 (392)
T PRK14279 35 RELHPDANPGDP----AAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLND 110 (392)
T ss_pred HHHCcCCCCCCh----HHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccccCCCCCCCccccccccCcChhh
Confidence 589999976443 7899999999999999999999999996431 110 00 00
Q ss_pred -----------hHHHHHHHHhhhcc------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295 55 -----------DFYGFVQEMVSMMN------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR 117 (122)
Q Consensus 55 -----------~~~~~f~~~f~~~~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~ 117 (122)
.|.++|+.||++.. ...++.|+.++|.|||+|+|+|++++|.+++.+ .|+.|+|+|+..
T Consensus 111 ~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~----~C~~C~G~G~~~ 186 (392)
T PRK14279 111 LFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPA----PCTTCHGSGARP 186 (392)
T ss_pred hhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccc----cCCCCccccccC
Confidence 13355566665211 122456899999999999999999999997776 888888888765
Q ss_pred C
Q 033295 118 G 118 (122)
Q Consensus 118 ~ 118 (122)
+
T Consensus 187 ~ 187 (392)
T PRK14279 187 G 187 (392)
T ss_pred C
Confidence 4
No 11
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=2.2e-26 Score=180.64 Aligned_cols=110 Identities=23% Similarity=0.282 Sum_probs=86.5
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------cchhHHHHHHHHhhhcc---
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------EDEDFYGFVQEMVSMMN--- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------~~~~~~~~f~~~f~~~~--- 68 (122)
++||||+|+ ++ +|+++|++|++||+|||||++|+.||+++...... +..+|.++|..||++.+
T Consensus 29 ~~~hpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~~~f~~~~d~f~~ffgg~g~~~ 103 (378)
T PRK14278 29 RELHPDVNP-DE----EAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFEAFFGGGAASR 103 (378)
T ss_pred HHHCCCCCC-cH----HHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCCcCcCchhHHHHHHhCCCCCCC
Confidence 589999965 33 78999999999999999999999999977532110 11236688889987432
Q ss_pred ----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 69 ----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 69 ----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
..+++.|+.+.|.+||+|+|+|++++|.+++.+ .|..|+|+|++.++
T Consensus 104 ~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~----~C~~C~G~G~~~~~ 154 (378)
T PRK14278 104 GPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAV----LCDRCHGKGTAGDS 154 (378)
T ss_pred CCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeec----cCCCCcCccCCCCC
Confidence 122456899999999999999999999997776 89999999987653
No 12
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=7.8e-27 Score=179.11 Aligned_cols=108 Identities=28% Similarity=0.443 Sum_probs=86.1
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccc--hhHHHHHHHHhhhc--c--cccccC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEED--EDFYGFVQEMVSMM--N--NVKDEG 74 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~--~~~~~~f~~~f~~~--~--~~~~~~ 74 (122)
|+||||| || .|.++|++|+.||||||||+||++||++|++....++ .++.. |..||++. . ...++.
T Consensus 30 ~k~HpDk---n~----~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~~-f~~~F~~g~~~~~~~~rg~ 101 (337)
T KOG0712|consen 30 LKYHPDK---NP----DAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFGG-FSQFFGFGGNGGRGRQRGK 101 (337)
T ss_pred HHhCCCC---Cc----cHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCcc-HHHhccCCCcCccccccCC
Confidence 5899999 55 4789999999999999999999999998876654321 12222 55555422 2 223467
Q ss_pred CchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCCC
Q 033295 75 DSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS 120 (122)
Q Consensus 75 ~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~ 120 (122)
|+.+++.++|+|+|.|.++.+.+++++ .|+.|.|.|.++++.
T Consensus 102 ~~~~~~~~~Le~~y~G~s~kl~l~~~~----iCs~C~GsGgksg~~ 143 (337)
T KOG0712|consen 102 DVVHQLKVTLEELYMGKSKKLFLSRNF----ICSKCSGSGGKSGSA 143 (337)
T ss_pred CceEEEEEEHHHhhcCCccceecccCc----cCCcCCCCCCCCCCC
Confidence 999999999999999999999998776 999999999998876
No 13
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.93 E-value=5.9e-26 Score=177.91 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=84.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c-------chhHHHHHHHHhhhcc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E-------DEDFYGFVQEMVSMMN 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~-------~~~~~~~f~~~f~~~~ 68 (122)
++||||+|++++ +|+++|++|++||+||+||.+|+.||+++..+... + .+.|.++|+.||++..
T Consensus 30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~~~~~~~~~~f~d~f~~~fg~g~ 105 (373)
T PRK14301 30 LQYHPDRNPDNP----EAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFSHFSDIFGDLFGFSG 105 (373)
T ss_pred HHhCCCcCCCCh----HHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCcccccccccchHHHHHHHhhccC
Confidence 589999976433 78899999999999999999999999976543211 0 1235677888776211
Q ss_pred -------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 -------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 -------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
+..++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..+
T Consensus 106 ~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~ 158 (373)
T PRK14301 106 GGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNV----TCDDCGGSGAAPG 158 (373)
T ss_pred cccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecc----cCCCCCCcccCCC
Confidence 112456899999999999999999999997776 8888888887654
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=4.7e-26 Score=179.16 Aligned_cols=110 Identities=27% Similarity=0.394 Sum_probs=82.9
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-----------cc---------chhHHHHH
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-----------EE---------DEDFYGFV 60 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-----------~~---------~~~~~~~f 60 (122)
++||||+|+.++ +|+++|++|++||+|||||+||+.||+++...+. .+ ..+|.++|
T Consensus 31 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~f 106 (386)
T PRK14277 31 KKYHPDLNPGDK----EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIF 106 (386)
T ss_pred HHHCCCcCCCch----HHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccCCcCCCCccccCccccccchhHHH
Confidence 589999976433 6899999999999999999999999996643221 00 02244566
Q ss_pred HHHhhhc---c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 61 QEMVSMM---N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 61 ~~~f~~~---~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
.+||+.+ + ...++.|+..+|.|||+|+|+|++++|.+++.+ .|..|+|+|...+
T Consensus 107 ~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~ 169 (386)
T PRK14277 107 EDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFE----KCDVCKGSGAKPG 169 (386)
T ss_pred HHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeec----cCCCCCCCCcCCC
Confidence 6666521 1 122456899999999999999999999997766 8999999887653
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=4e-26 Score=179.01 Aligned_cols=109 Identities=27% Similarity=0.337 Sum_probs=85.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c-----ch---hHHHHHHHHhhhc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E-----DE---DFYGFVQEMVSMM 67 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~-----~~---~~~~~f~~~f~~~ 67 (122)
++||||+|+ ++ +|+++|++|++||+|||||++|+.||+++...+.. + .. +|.++|+.||++.
T Consensus 30 ~~~HpD~~~-~~----~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fgg~ 104 (376)
T PRK14280 30 KKYHPDINK-EE----GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGG 104 (376)
T ss_pred HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCCCCCccccccchhhHHHHhCCc
Confidence 489999975 44 68999999999999999999999999976543211 0 01 3568888888642
Q ss_pred cc------ccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 68 NN------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 68 ~~------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
+. .+++.|+.++|.|||+|+|+|++++|.+++.+ .|+.|+|+|+..+
T Consensus 105 ~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 157 (376)
T PRK14280 105 GRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEE----TCDTCHGSGAKPG 157 (376)
T ss_pred cccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeec----cCCCCCCcccCCC
Confidence 21 22456899999999999999999999997776 8999999987654
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=1e-25 Score=176.20 Aligned_cols=110 Identities=28% Similarity=0.393 Sum_probs=84.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----c-------chhHHHHHHHHhh-hcc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----E-------DEDFYGFVQEMVS-MMN 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----~-------~~~~~~~f~~~f~-~~~ 68 (122)
++||||+|+.++ +|+++|++|++||+||+||.+|+.||++|...+.. + ...|.++|.+||+ +..
T Consensus 30 ~~~HPD~~~~~~----~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~~~~~~~~~~~d~f~~~fg~g~~ 105 (366)
T PRK14294 30 MKYHPDRNPGDK----EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGG 105 (366)
T ss_pred HHHCCCCCCCch----HHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcCccccchhhhhhhHHHhhccCCC
Confidence 589999976433 68899999999999999999999999977543211 0 1235677888887 211
Q ss_pred -------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 -------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 -------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|.|+|...+
T Consensus 106 ~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 158 (366)
T PRK14294 106 RRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLE----TCEECHGSGCEPG 158 (366)
T ss_pred cCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecc----cCCCCCCccccCC
Confidence 112456899999999999999999999997766 7888888887654
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=9.3e-26 Score=176.58 Aligned_cols=111 Identities=30% Similarity=0.501 Sum_probs=83.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-------ccc---h----hH-----HHHHH
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-------EED---E----DF-----YGFVQ 61 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-------~~~---~----~~-----~~~f~ 61 (122)
++||||+|+.+ ..+|+++|++|++||+|||||+||+.||+.+..... .++ . .| .++|.
T Consensus 30 ~~~HPD~~~~~---~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~f~ 106 (369)
T PRK14282 30 KEWHPDRHPEN---RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFD 106 (369)
T ss_pred HHHCCCCCccc---hhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCCCCCcccccccccccccccchhhh
Confidence 47999996432 246899999999999999999999999997654321 000 1 12 26677
Q ss_pred HHhhhcc-------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 62 EMVSMMN-------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 62 ~~f~~~~-------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
.||++.. ...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..+
T Consensus 107 ~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 166 (369)
T PRK14282 107 IFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYE----TCPHCGGTGVEPG 166 (369)
T ss_pred HhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecc----cCCCCCccCCCCC
Confidence 7776421 112456899999999999999999999997776 8888888887654
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=1.3e-25 Score=176.84 Aligned_cols=111 Identities=26% Similarity=0.382 Sum_probs=82.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccC----CCCCCCcc----c--c-----------------
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDA----GLYDPLEE----E--D----------------- 53 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~----~~~~~~~~----~--~----------------- 53 (122)
++||||+|+.++ +|+++|++|++||+||+||++|+.||+ ++...+.. + .
T Consensus 35 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 110 (389)
T PRK14295 35 REYHPDANKGDA----KAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGG 110 (389)
T ss_pred HHHCCCcCCCch----hHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCCCCCCCCCCCcccccccccccccc
Confidence 589999976433 689999999999999999999999998 55432210 0 0
Q ss_pred ------hhHHHHHHHHhhhcc---cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 54 ------EDFYGFVQEMVSMMN---NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 54 ------~~~~~~f~~~f~~~~---~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
..|.++|+.||++.. ..+++.|+.++|.|||+|+|+|++++|.+++.+ .|..|+|+|+..++
T Consensus 111 ~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~~ 181 (389)
T PRK14295 111 GGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTSQA----PCPACSGTGAKNGT 181 (389)
T ss_pred cccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeeccc----cCCCCcccccCCCC
Confidence 013345555554321 123456899999999999999999999997776 88888888887653
No 19
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.92 E-value=1.8e-25 Score=177.38 Aligned_cols=105 Identities=23% Similarity=0.337 Sum_probs=83.5
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--cchhHHHHHHHHhhhcc---cccccCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--EDEDFYGFVQEMVSMMN---NVKDEGD 75 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~~~~~~~~f~~~f~~~~---~~~~~~~ 75 (122)
|+||||+| ++ .++|++|++||+|||||+||++||+++...+.. +..+|.++|..||++.. ..+++.|
T Consensus 54 ~k~HPDk~---~~-----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d~~d~f~~~Fggg~~~~~~~rg~d 125 (421)
T PTZ00037 54 IKHHPDKG---GD-----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADASDLFDLIFGGGRKPGGKKRGED 125 (421)
T ss_pred HHHCCCCC---ch-----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcchhhhHHHhhccccccccccCCCC
Confidence 58999995 41 379999999999999999999999977654321 22356788888887532 1234568
Q ss_pred chhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295 76 SFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR 117 (122)
Q Consensus 76 ~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~ 117 (122)
+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..
T Consensus 126 i~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~ 163 (421)
T PTZ00037 126 IVSHLKVTLEQIYNGAMRKLAINKDV----ICANCEGHGGPK 163 (421)
T ss_pred EEEEeeeeHHHHhCCCceEEEeeccc----cccccCCCCCCC
Confidence 99999999999999999999997776 888888888754
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.92 E-value=2.2e-25 Score=174.48 Aligned_cols=110 Identities=29% Similarity=0.420 Sum_probs=83.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c------c-hhHHHHHHHHhhhc-
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E------D-EDFYGFVQEMVSMM- 67 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~------~-~~~~~~f~~~f~~~- 67 (122)
++||||+|+.++ +|+++|++|++||+||+||.+|+.||+.+...... + . +.|.++|+.||++.
T Consensus 30 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~fgg~~ 105 (371)
T PRK10767 30 MKYHPDRNPGDK----EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGDIFGDIFGGGR 105 (371)
T ss_pred HHHCCCCCCCcH----HHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCCCCCccccccchhhhhhhhccCCc
Confidence 489999976433 68899999999999999999999999976543221 0 0 12556777777531
Q ss_pred ----ccccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 68 ----NNVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 68 ----~~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
....++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|.|+|...+
T Consensus 106 ~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~ 156 (371)
T PRK10767 106 GGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLV----TCDTCHGSGAKPG 156 (371)
T ss_pred cccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecc----cCCCCCCcccCCC
Confidence 1123456899999999999999999999997765 7888888887654
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=2.2e-25 Score=175.62 Aligned_cols=111 Identities=23% Similarity=0.335 Sum_probs=82.9
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc--------ccch------------------
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE--------EEDE------------------ 54 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~--------~~~~------------------ 54 (122)
++||||+|++++ .|+++|++|++||+||+||+||+.||+++...+. .+..
T Consensus 27 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~~g~~~~~~~~~~~~~~f~~~~~ 102 (391)
T PRK14284 27 VKYHPDKNPGDA----EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFG 102 (391)
T ss_pred HHHCcCCCCCch----HHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCCCCcCcccchhhhcccccccccc
Confidence 479999976433 7899999999999999999999999997654220 0000
Q ss_pred hHHHHHHHHhhhcc----------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 55 DFYGFVQEMVSMMN----------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 55 ~~~~~f~~~f~~~~----------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
.+.++|+.||++.+ ...++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|+|+|+..++
T Consensus 103 ~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~ 173 (391)
T PRK14284 103 GGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYK----SCDACSGSGANSSQ 173 (391)
T ss_pred ccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeec----cCCCCcccccCCCC
Confidence 01356677775311 112456899999999999999999999997765 88888888877643
No 22
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.91 E-value=9.3e-25 Score=170.03 Aligned_cols=109 Identities=31% Similarity=0.401 Sum_probs=84.9
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---------------cchhHHHHHHHHhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---------------EDEDFYGFVQEMVS 65 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---------------~~~~~~~~f~~~f~ 65 (122)
++||||+|+ ++ +|+++|++|++||+||+|+.+|+.||..+...... +...|.++|..||+
T Consensus 26 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~fg 100 (354)
T TIGR02349 26 KKYHPDRNK-DK----EAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGDFGDIFGDFFG 100 (354)
T ss_pred HHHCCCCCC-Cc----cHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCCcCCccccCcCchhhhHHHHhc
Confidence 579999975 33 68899999999999999999999999966543211 01245678888887
Q ss_pred hcc--------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 66 MMN--------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 66 ~~~--------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
+.. ...++.|+.++|.+||+|+|+|++++|.+++.+ .|..|+|+|+..+
T Consensus 101 ~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 157 (354)
T TIGR02349 101 GGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKE----SCETCHGTGAKPG 157 (354)
T ss_pred cCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCC----cCCCCCCCCCCCC
Confidence 421 122455899999999999999999999997776 8999999987654
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.91 E-value=1e-24 Score=171.43 Aligned_cols=110 Identities=24% Similarity=0.393 Sum_probs=81.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--------------cchhHHHHHHHHhhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--------------EDEDFYGFVQEMVSM 66 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--------------~~~~~~~~f~~~f~~ 66 (122)
++||||+|+ ++ +|+++|++|++||+|||||.+|+.||+++...... ...++.++|.+||+.
T Consensus 29 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~f~~ 103 (382)
T PRK14291 29 RKYHPDFNK-NP----EAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDI 103 (382)
T ss_pred HHHCCCCCC-Cc----cHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccccccccccccCCCHHHHHHHHHHh
Confidence 589999976 34 68899999999999999999999999966532210 012345666666311
Q ss_pred ------ccc-------------ccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCC
Q 033295 67 ------MNN-------------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGT 119 (122)
Q Consensus 67 ------~~~-------------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~ 119 (122)
+.. ..++.|+.+.|.+||+|+|+|++++|.+++.+ .|..|+|+|+..++
T Consensus 104 fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~~ 171 (382)
T PRK14291 104 FGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYV----PCEACGGTGYDPGS 171 (382)
T ss_pred ccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeec----cCCCCccccCCCCC
Confidence 110 11345888999999999999999999997766 88888888876543
No 24
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=2e-24 Score=168.86 Aligned_cols=111 Identities=27% Similarity=0.394 Sum_probs=84.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc---c--------chhHHHHHHHHhhhc-c
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE---E--------DEDFYGFVQEMVSMM-N 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~---~--------~~~~~~~f~~~f~~~-~ 68 (122)
++||||+|+ ++.++|.++|++|++||+|||||.+|++||.++..++.. + ..+|.++|..||++. .
T Consensus 29 ~~~HPD~~~---~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~ 105 (365)
T PRK14290 29 KKWHPDLHP---GNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFG 105 (365)
T ss_pred HHHCcCCCC---CchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCccccccccccchhHHHHHHhcCccc
Confidence 589999964 333479999999999999999999999999977543321 0 124567888887641 0
Q ss_pred ----------ccc--ccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 ----------NVK--DEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 ----------~~~--~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
... ++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|.|+|+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~----~C~~C~G~g~~~~ 163 (365)
T PRK14290 106 SDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNA----MCPDCSGTGAKNG 163 (365)
T ss_pred cccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecc----cCCCCccccCCCC
Confidence 111 145899999999999999999999997765 7888888887543
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=7.4e-25 Score=171.95 Aligned_cols=109 Identities=25% Similarity=0.373 Sum_probs=79.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc----------c-c---h----hHHHHHHH
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE----------E-D---E----DFYGFVQE 62 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~----------~-~---~----~~~~~f~~ 62 (122)
++||||+|+ ++ +|+++|++|++||+|||||.+|++||+.+..++.. . . . +|.++|..
T Consensus 31 ~~~HPD~~~-~~----~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 105 (378)
T PRK14283 31 RKYHPDVSE-EE----GAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDIFNNINFEDIFQGFGFGIGNIFDM 105 (378)
T ss_pred HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccccccccccCccccccccccchhhhccc
Confidence 589999965 33 78999999999999999999999999976533210 0 0 0 12233333
Q ss_pred H-hhhcc--cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 63 M-VSMMN--NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 63 ~-f~~~~--~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
| |++.. ...++.|+.++|.+||+|+|+|++++|.+++.+ .|+.|.|+|...+
T Consensus 106 ~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 160 (378)
T PRK14283 106 FGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTK----KCPVCNGSRAEPG 160 (378)
T ss_pred cccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeec----cCCCCCccccCCC
Confidence 3 33211 123456899999999999999999999997765 8999999887654
No 26
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.90 E-value=1.5e-24 Score=171.21 Aligned_cols=110 Identities=25% Similarity=0.374 Sum_probs=81.9
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc------------cchhHHHHH---HHHhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE------------EDEDFYGFV---QEMVS 65 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~------------~~~~~~~~f---~~~f~ 65 (122)
++||||+|+.++ +|+++|++|++||+||+||.+|+.||+.+...+.. ...+|.++| .+||+
T Consensus 29 ~~~HPD~~~~~~----~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~d~f~~f~~~Fg 104 (397)
T PRK14281 29 LKYHPDKNPDNK----EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFG 104 (397)
T ss_pred HHHCCCcCCCch----HHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCCCCCCcCCCCHHHHHHHHHHHhC
Confidence 589999976333 68899999999999999999999999976532210 111344554 36665
Q ss_pred hc-----------------c-c-c-----cccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 66 MM-----------------N-N-V-----KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 66 ~~-----------------~-~-~-----~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
+. . . . .++.|+.+.|.|||+|+|+|++++|.+++.+ .|..|+|+|+..+
T Consensus 105 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~~ 177 (397)
T PRK14281 105 GGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKKQV----PCKECNGTGSKTG 177 (397)
T ss_pred CCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEeee----cCCCCCCcccCCC
Confidence 31 0 0 0 1345889999999999999999999997765 8999998887654
No 27
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=9.3e-24 Score=165.38 Aligned_cols=109 Identities=25% Similarity=0.324 Sum_probs=84.1
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--c-------chhHHHHHHHHhhhcc---
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--E-------DEDFYGFVQEMVSMMN--- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--~-------~~~~~~~f~~~f~~~~--- 68 (122)
++||||+|+ + .+|.++|++|++||+|||||.+|+.||++|...... + ..++.++|..||++..
T Consensus 28 ~~~hpD~~~-~----~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~~~~~d~~d~f~~~fg~~~~~~ 102 (371)
T PRK14292 28 LKYHPDRNK-E----KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGG 102 (371)
T ss_pred HHHCCCCCC-C----hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccCccCCChHHHHHHhhCCCCcCC
Confidence 479999965 3 368999999999999999999999999977543110 0 0123478888887421
Q ss_pred -----cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 -----NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 -----~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
...++.++...+.+||+|+|+|+++++.+++.+ .|+.|+|+|...+
T Consensus 103 ~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~----~C~~C~G~G~~~~ 153 (371)
T PRK14292 103 GRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLT----ECEHCHGSRTEPG 153 (371)
T ss_pred CCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeee----cCCCCcccccCCC
Confidence 122455899999999999999999999997765 8999999887654
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.89 E-value=9.8e-24 Score=165.34 Aligned_cols=109 Identities=25% Similarity=0.420 Sum_probs=79.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----------c-chh----HHHHHHHHh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----------E-DED----FYGFVQEMV 64 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----------~-~~~----~~~~f~~~f 64 (122)
++||||+|+ ++ .|+++|++|++||+||+|+.+|+.||+++...+.. + ..+ |.++|+.+|
T Consensus 29 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~g~~~~~~~~~~~~f~~~f~~~~ 103 (372)
T PRK14300 29 KQYHPDTTD-AK----DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFM 103 (372)
T ss_pred HHHCcCCCC-Cc----CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCCCCCCccccchhhhHHHHHHhhc
Confidence 589999975 33 58889999999999999999999999976532210 0 012 334444444
Q ss_pred hhccc--c----cccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 65 SMMNN--V----KDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 65 ~~~~~--~----~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
++... . .++.++.+.|.+||+|+|+|++++|.+++.+ .|..|.|+|+..+
T Consensus 104 gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~----~C~~C~G~g~~~~ 159 (372)
T PRK14300 104 GGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEV----KCDTCHGSGSEKG 159 (372)
T ss_pred CCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeecc----ccCCCCCcccCCC
Confidence 32111 1 2445899999999999999999999997776 8888888887544
No 29
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=1.7e-23 Score=164.65 Aligned_cols=109 Identities=23% Similarity=0.316 Sum_probs=78.9
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc-----c----chhHHHHH---HHHhhh--
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE-----E----DEDFYGFV---QEMVSM-- 66 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~-----~----~~~~~~~f---~~~f~~-- 66 (122)
++||||+|++++ +|+++|++|++||+||+||++|+.||+++...... + ..++.++| .++|+.
T Consensus 31 ~~~HpD~~~~~~----~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~fg~~~ 106 (386)
T PRK14289 31 IQYHPDKNPGDK----EAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHG 106 (386)
T ss_pred HHHCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCCCCCCCcChhhhhHHhhhhhcccc
Confidence 479999976433 69999999999999999999999999976533210 0 11223333 222331
Q ss_pred --c------c------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCC
Q 033295 67 --M------N------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKR 117 (122)
Q Consensus 67 --~------~------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~ 117 (122)
+ . ...++.++.+.|.|||+|+|+|++++|.+++.+ .|..|.|+|+..
T Consensus 107 gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~----~C~~C~G~G~~~ 167 (386)
T PRK14289 107 GGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYV----PCSHCHGTGAEG 167 (386)
T ss_pred cCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeec----ccCCCCCCCCCC
Confidence 1 0 112345889999999999999999999997765 888888888764
No 30
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.88 E-value=2.6e-23 Score=163.04 Aligned_cols=109 Identities=28% Similarity=0.376 Sum_probs=83.2
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcc--------cchhHHHHHHHHhhhc---c-
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEE--------EDEDFYGFVQEMVSMM---N- 68 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~--------~~~~~~~~f~~~f~~~---~- 68 (122)
++||||+|+ ++ .|+++|++|++||+||+||.+|+.||.++...... ...+|.++|..||+++ .
T Consensus 29 ~~~HPD~~~-~~----~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~ 103 (374)
T PRK14293 29 RKYHPDVNK-EP----GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFPDMGDMGGFADIFETFFSGFGGAGG 103 (374)
T ss_pred HHHCCCCCC-Cc----CHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcCCcccccchHHHHHHHhcccCCCCC
Confidence 479999965 33 58899999999999999999999999976543211 0123567788887531 1
Q ss_pred --------cccccCCchhhhhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCC
Q 033295 69 --------NVKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRG 118 (122)
Q Consensus 69 --------~~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~ 118 (122)
...++.++..+|.+||+|+|+|++++|.+++.+ .|..|.|+|...+
T Consensus 104 ~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~----~C~~C~G~G~~~~ 157 (374)
T PRK14293 104 QGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLE----TCETCRGSGAKPG 157 (374)
T ss_pred CCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccc----cCCCCCCcCCCCC
Confidence 012345788999999999999999999997765 8888888887653
No 31
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-20 Score=141.79 Aligned_cols=111 Identities=31% Similarity=0.430 Sum_probs=87.3
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccchhHHHHHHHHhhh-cccccccCCchhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSM-MNNVKDEGDSFED 79 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~~~~~~~f~~~f~~-~~~~~~~~~~~~~ 79 (122)
++||||.|. ++ +|.++|++|.+|||||+|++||+.||..+............++|..+|++ +.+.-...+..+.
T Consensus 69 KkyHPD~n~-~~----~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d 143 (288)
T KOG0715|consen 69 KKYHPDVNK-DK----EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNPFDVFLEFFGGKMNKRVPDKDQYYD 143 (288)
T ss_pred HhhCCCCCC-Cc----chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCccchHHHhhcccccccccCcccccc
Confidence 479999976 33 79999999999999999999999999977654222222345667777766 4444445577778
Q ss_pred hhhHHHHHhcCceeeEeecCCCcccccccCCCccccCCCCC
Q 033295 80 LQRMFVEMVDGMSFDFNYDPTDAQRACVNTSKGKAAKRGTS 120 (122)
Q Consensus 80 l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~G~G~~~~~~ 120 (122)
+.++|.++..|+.+.++++... .|.+|.|.|...+..
T Consensus 144 ~~~~f~~A~~g~~~~~~~~~~~----~~~t~~~~~~~~~~~ 180 (288)
T KOG0715|consen 144 LSLDFKEAVRGSKKRISFNVLS----DCETCFGSGAEEGAK 180 (288)
T ss_pred cccCHHHHhhccccceEEEeec----ccccccCcCcccccc
Confidence 9999999999999999997665 999999999776653
No 32
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.5e-20 Score=142.38 Aligned_cols=89 Identities=28% Similarity=0.464 Sum_probs=64.1
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCccc----chhH--HHHHHHHhhhc-----cc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEE----DEDF--YGFVQEMVSMM-----NN 69 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~----~~~~--~~~f~~~f~~~-----~~ 69 (122)
||||||||++|| .|.+.|++|+.||||||||+||+.||..|+.+.... ..+. .++|+.+|+-+ +.
T Consensus 42 Lk~HPDkNpddp----~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~g~~~~~~f~~~f~dfg~~~~g~ 117 (336)
T KOG0713|consen 42 LKYHPDKNPDDP----NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEGGGGGNDIFSAFFGDFGVTVGGN 117 (336)
T ss_pred HHhCCCCCCCCH----HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcccccccccCCcccchHHHhhcccccccCCC
Confidence 689999998887 899999999999999999999999999876554421 1111 24455554422 11
Q ss_pred -----ccccCCchhhhhhHHHHHhcCcee
Q 033295 70 -----VKDEGDSFEDLQRMFVEMVDGMSF 93 (122)
Q Consensus 70 -----~~~~~~~~~~l~~~l~e~~~G~~~ 93 (122)
...+.++...+..+++++|.|...
T Consensus 118 ~~~e~~~~g~~V~~~~e~~~~h~y~~~~~ 146 (336)
T KOG0713|consen 118 PLEEALPKGSDVSSDLEKQLEHFYMGNFV 146 (336)
T ss_pred cccCCCCCCceEEeehhhchhhhhcccHH
Confidence 233456778888889988866544
No 33
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1e-19 Score=138.65 Aligned_cols=94 Identities=29% Similarity=0.390 Sum_probs=71.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc-------------cc-----chhHHHHHHH
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE-------------EE-----DEDFYGFVQE 62 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~-------------~~-----~~~~~~~f~~ 62 (122)
++||||+|+ ++ +|+++|++|++||+|||||++|+.||+.+..... .+ ..+|.++|..
T Consensus 30 ~~~HPD~~~-~~----~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~ 104 (291)
T PRK14299 30 RKYHPDVNK-SP----GAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQ 104 (291)
T ss_pred HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCCCCCCCCCccccCcCCHHHHHHH
Confidence 489999975 44 6899999999999999999999999986543100 00 1246688888
Q ss_pred Hhhhcc---c-----------ccccCCchhhhhhHHHHHhcCceeeEeecC
Q 033295 63 MVSMMN---N-----------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDP 99 (122)
Q Consensus 63 ~f~~~~---~-----------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~ 99 (122)
||++.+ . .+++.|+..++.|||+|+|.|+++.++++.
T Consensus 105 ~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~g 155 (291)
T PRK14299 105 LFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVAG 155 (291)
T ss_pred HhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeCC
Confidence 887421 1 123458899999999999999999988754
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.76 E-value=3.6e-19 Score=136.41 Aligned_cols=96 Identities=26% Similarity=0.427 Sum_probs=72.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC----CCc------c----cchhHHHHHHHHhhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD----PLE------E----EDEDFYGFVQEMVSM 66 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~----~~~------~----~~~~~~~~f~~~f~~ 66 (122)
++||||+|+ ++ +|+++|++|++||+||+||.+|+.||..+.. .+. . ...+|.++|+.||++
T Consensus 30 ~k~HPD~~~-~~----~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~g~ 104 (306)
T PRK10266 30 RKYHPDVSK-EP----DAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIFSSIFGQ 104 (306)
T ss_pred HHHCcCCCC-Cc----cHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccccCCCCCCCCCCHHHHHHHHhCC
Confidence 589999965 33 6899999999999999999999999985421 110 0 112467888888874
Q ss_pred ccc------ccccCCchhhhhhHHHHHhcCceeeEeecCCC
Q 033295 67 MNN------VKDEGDSFEDLQRMFVEMVDGMSFDFNYDPTD 101 (122)
Q Consensus 67 ~~~------~~~~~~~~~~l~~~l~e~~~G~~~~~~~~~~~ 101 (122)
.++ .+++.|+..++.|||+|++.|+.+++.+++.+
T Consensus 105 ~~~~~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~~ 145 (306)
T PRK10266 105 HARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPV 145 (306)
T ss_pred CCCCCCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEeccc
Confidence 221 12345899999999999999999999996653
No 35
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-14 Score=110.82 Aligned_cols=44 Identities=41% Similarity=0.738 Sum_probs=39.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP 48 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~ 48 (122)
|+||||||++|| .|.++|+.|++||+||+|+++|+.||..+...
T Consensus 31 L~~HPDKNp~dP----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 31 LQYHPDKNPGDP----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred HhcCCCCCCCCh----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 589999988888 59999999999999999999999999966543
No 36
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.1e-14 Score=115.30 Aligned_cols=42 Identities=48% Similarity=0.779 Sum_probs=37.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 45 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~ 45 (122)
|+||||| ||...++|+++|+.|+.||+|||||+.|++||...
T Consensus 34 Lq~HPDk---npd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 34 LQYHPDK---NPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred HhhCCCC---CCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 7899999 45555799999999999999999999999999853
No 37
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.3e-13 Score=101.28 Aligned_cols=63 Identities=37% Similarity=0.548 Sum_probs=48.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC--cccchhHHHHHHHHhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL--EEEDEDFYGFVQEMVS 65 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~--~~~~~~~~~~f~~~f~ 65 (122)
|+||||+| +.+++.+|+++|+.|+.||+||||.++|+.||..|.-.. +.-..++-+||..+|-
T Consensus 40 l~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d~~~~~~e~~~~iyk 104 (264)
T KOG0719|consen 40 LRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGDIDEDWLEFWRAIYK 104 (264)
T ss_pred HHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccchhhhHHHHHHHHHHh
Confidence 68999997 345678999999999999999999999999999765432 2223456666666654
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2e-13 Score=108.33 Aligned_cols=48 Identities=42% Similarity=0.649 Sum_probs=43.9
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295 2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 50 (122)
Q Consensus 2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~ 50 (122)
-|||||.. +|+.|+.|++.|+.|.+||||||||++|++||..|..++.
T Consensus 36 lfHPDkh~-dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 36 LFHPDKHT-DPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hcCCcccC-ChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 48999987 7888999999999999999999999999999998876654
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-13 Score=101.69 Aligned_cols=42 Identities=45% Similarity=0.808 Sum_probs=38.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 46 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~ 46 (122)
|+||||++++|| ++.++|++||+||+|||||.||..||..|.
T Consensus 57 ~k~HPD~~gd~P----~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 57 LKYHPDKNGDNP----EATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred HHhCCCcCCCCc----hhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 479999988778 799999999999999999999999999654
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.31 E-value=1.1e-12 Score=111.61 Aligned_cols=45 Identities=31% Similarity=0.582 Sum_probs=38.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLE 50 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~ 50 (122)
++||||+|+ ++ .|.++|++|++||+|||||.+|+.||..|..+..
T Consensus 599 lkyHPDKN~-~~----~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 599 ENYYPPKRS-GN----EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred HHhCCCCCC-Cc----hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 589999965 22 5788999999999999999999999998876543
No 41
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.12 E-value=2.1e-11 Score=72.97 Aligned_cols=39 Identities=41% Similarity=0.808 Sum_probs=33.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhccc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYD 42 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD 42 (122)
++||||++..++ +.+.+.|+.|++||++|+||.+|+.||
T Consensus 26 ~~~HPD~~~~~~---~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 26 KQYHPDKNSGDE---AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHTSTTTGTSTH---HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hccccccchhhh---hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 369999976332 468999999999999999999999998
No 42
>PHA03102 Small T antigen; Reviewed
Probab=99.08 E-value=7.3e-11 Score=82.41 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=43.2
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCCcccchhHHHHHHHHhhh
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPLEEEDEDFYGFVQEMVSM 66 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~~~~~~~~~~~f~~~f~~ 66 (122)
++||||++. ..++|++|++||+||+|+.+|..||..+.+..........++|..+||+
T Consensus 33 ~~~HPDkgg--------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~~~f~~~fg~ 90 (153)
T PHA03102 33 LEFHPDKGG--------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEEDVPSGYVGATFGD 90 (153)
T ss_pred HHHCcCCCc--------hhHHHHHHHHHHHHHhhHHHhccccccCCcccccccccHHHHhhhhcCC
Confidence 479999953 2369999999999999999999999988765433333355666666653
No 43
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.98 E-value=3.1e-10 Score=95.06 Aligned_cols=44 Identities=43% Similarity=0.627 Sum_probs=37.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 49 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~ 49 (122)
++||||++. ++ .|..+|++|++||+||+||.+|+.||..+..+.
T Consensus 28 KKyHPDKn~-~~----eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 28 KKYHPDRNK-AP----DAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred HHHCcCCCC-Ch----hHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 479999975 33 688999999999999999999999999776543
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.2e-10 Score=80.86 Aligned_cols=41 Identities=44% Similarity=0.818 Sum_probs=35.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~ 44 (122)
++||||+|+.++. .|.++|++|++||+||+|+.+|+.||..
T Consensus 32 ~~~HPD~~~~~~~---~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 32 LKYHPDRNPGDPK---VAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred HHhCCCCCCCchh---HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 5799999775441 4899999999999999999999999973
No 45
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=2.5e-10 Score=80.81 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=34.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~ 44 (122)
++||||+++ ++.++..+...|..|++||+||+||.+|+.|+..
T Consensus 30 ~~~HPDk~~-~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 30 VKYHPDKAK-TLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred HHHCcCCCC-CHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 479999976 3333445666799999999999999999999863
No 46
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=4.8e-10 Score=79.86 Aligned_cols=43 Identities=33% Similarity=0.388 Sum_probs=36.2
Q ss_pred CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295 1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
++||||++.+.++ ++..|.+.|..|++||+||+||.+|+.|+.
T Consensus 32 ~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 32 REVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred HHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 3799999875543 344578889999999999999999999996
No 47
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=5.5e-10 Score=79.43 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=35.8
Q ss_pred CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295 1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44 (122)
Q Consensus 1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~ 44 (122)
++||||+..+.++ ++..|.+.|..|++||+||+||.+|+.|+..
T Consensus 29 ~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 29 RQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred HHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 3799999774432 3345778999999999999999999999863
No 48
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.88 E-value=9e-10 Score=77.34 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=36.0
Q ss_pred CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCC
Q 033295 1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAG 44 (122)
Q Consensus 1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~ 44 (122)
++||||+....++ ++..|...|+.|++||+||+||.+|+.|+..
T Consensus 17 ~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 17 RQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred HHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 3799999764332 3446888999999999999999999999974
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.82 E-value=1.3e-09 Score=84.87 Aligned_cols=45 Identities=38% Similarity=0.567 Sum_probs=40.0
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 46 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~ 46 (122)
++||||-.. +.+++..|+++|-.|..|-||||||+||+.||.+..
T Consensus 420 qkWHPDNFq-dEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 420 QKWHPDNFQ-DEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred HhcCCcccc-CHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 489999876 666778999999999999999999999999999753
No 50
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.6e-09 Score=85.00 Aligned_cols=41 Identities=37% Similarity=0.579 Sum_probs=36.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCC
Q 033295 2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYD 47 (122)
Q Consensus 2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~ 47 (122)
-.|||||. +| .|.+.|+.|+.||+||+|++||.+||.....
T Consensus 262 LVhPDKn~-~~----~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k 302 (490)
T KOG0720|consen 262 LVHPDKNM-IP----RAEEAFKKLQVAFEVIGDSVKRKEYDLELKK 302 (490)
T ss_pred EeCCCccC-Ch----hHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 36999997 65 8999999999999999999999999986653
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.78 E-value=2.4e-09 Score=76.43 Aligned_cols=43 Identities=33% Similarity=0.299 Sum_probs=34.1
Q ss_pred CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295 1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
++||||++...++ ++..+.+.+..|++||+||+||.+|+.|..
T Consensus 34 ~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 34 AQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred HHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 3799999875442 223355668999999999999999999995
No 52
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.2e-09 Score=78.34 Aligned_cols=43 Identities=42% Similarity=0.694 Sum_probs=36.2
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 46 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~ 46 (122)
|+||||+|+.+ +..|..+|++|++||+||+|+.+|..||+.+.
T Consensus 29 ~~~hpdk~~~~---~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 29 LKYHPDKNPSP---KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred HhhCCCCCCCc---hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 58999996533 24566699999999999999999999999774
No 53
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-08 Score=76.39 Aligned_cols=67 Identities=27% Similarity=0.406 Sum_probs=46.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCC-----CcccchhHHHHHHHHhhhccc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDP-----LEEEDEDFYGFVQEMVSMMNN 69 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~-----~~~~~~~~~~~f~~~f~~~~~ 69 (122)
++||||+... .+. ....+-|+.|+.||+||+|+.+|..||..-.+. .-.....|.+.+...|....+
T Consensus 72 ~kyHPDk~aa-~g~-~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advppp~~~t~~~Ffe~w~pvFe~ear 143 (379)
T COG5269 72 YKYHPDKTAA-GGN-KGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPPPRIYTPDEFFEVWEPVFEREAR 143 (379)
T ss_pred HHhCccchhc-cCC-CCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCCccCCCchhHHHHHHHHHHhhhh
Confidence 4799999741 111 146688999999999999999999999854321 122345677777777764433
No 54
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.62 E-value=2.6e-08 Score=58.47 Aligned_cols=34 Identities=47% Similarity=0.842 Sum_probs=27.8
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccch
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENK 37 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~k 37 (122)
++||||++... ...+.+.|++|++||++|+||.+
T Consensus 27 ~~~HPD~~~~~---~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 27 LKYHPDKNPGD---KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHCcCCCCCc---hHHHHHHHHHHHHHHHHHcCCCC
Confidence 47999997532 25789999999999999999853
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.2e-08 Score=79.28 Aligned_cols=42 Identities=40% Similarity=0.742 Sum_probs=37.3
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 45 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~ 45 (122)
|.||||+|..+ +.+|+.+|++|.+||.||+||.+|..||.+.
T Consensus 399 L~~Hpd~~ags---q~eaE~kFkevgeAy~il~d~~kr~r~dsg~ 440 (486)
T KOG0550|consen 399 LVHHPDKNAGS---QKEAEAKFKEVGEAYTILSDPMKRVRFDSGQ 440 (486)
T ss_pred HHhCCCcCcch---hHHHHHHHHHHHHHHHHhcCHHHHhhccccc
Confidence 46999997755 3589999999999999999999999999964
No 56
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.54 E-value=4.4e-08 Score=56.43 Aligned_cols=30 Identities=50% Similarity=0.927 Sum_probs=25.1
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 34 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd 34 (122)
++||||++... +.+.+.|++|++||+||+|
T Consensus 26 ~~~HPD~~~~~----~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 26 LKYHPDKNPDD----PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHCcCCCCCc----HHHHHHHHHHHHHHHHhcC
Confidence 47999996521 3789999999999999986
No 57
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.6e-08 Score=70.99 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=38.6
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 49 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~ 49 (122)
++|||||++ ++ ++.++.|..|+.||+.|+|+..|..|-.+|....
T Consensus 125 ik~HPDK~~-~~---~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 125 IKYHPDKQP-PE---EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hhhCCCcCC-Cc---chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 589999987 44 3778899999999999999999999999876543
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=6.7e-08 Score=72.37 Aligned_cols=40 Identities=43% Similarity=0.759 Sum_probs=35.4
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcccCCC
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGL 45 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~ 45 (122)
++||||+++ +| ++.+.|..|..||++|.|.+.|..||-..
T Consensus 59 RrhHPDr~r-~~----e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 59 RRHHPDRNR-DP----ESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred HHhCCcccC-Cc----hhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 589999987 55 57799999999999999999999999644
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.40 E-value=1.2e-07 Score=67.58 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=34.4
Q ss_pred ccCCCCCCCCC-CChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295 2 KWHPDRSAKNP-GVAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 2 k~HPDkn~~~~-~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
++|||+....+ .++..|.+.-..||+||.||+||-+|+.|=.
T Consensus 31 ~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 31 SLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred HhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 68999986543 2445677788999999999999999999865
No 60
>PHA02624 large T antigen; Provisional
Probab=98.09 E-value=2.4e-06 Score=70.98 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=29.0
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhcc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSMY 41 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~Y 41 (122)
++||||++ . +.++|++|++||++|+|+.+|..|
T Consensus 39 kkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 39 KEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 57999994 2 347999999999999999999999
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.64 E-value=3.3e-05 Score=62.14 Aligned_cols=49 Identities=27% Similarity=0.439 Sum_probs=41.0
Q ss_pred CccCCCCCCC-CCCChhHHHHHHHHHHHHHhcccccchhhcccCCCCCCC
Q 033295 1 MKWHPDRSAK-NPGVAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLYDPL 49 (122)
Q Consensus 1 lk~HPDkn~~-~~~~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~~~~ 49 (122)
+||||||.++ -++.+.+.+++..+|+.||+.|+|...|+.|=.+|....
T Consensus 124 ~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 124 MKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred eecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 4899999764 245677999999999999999999999999988765443
No 62
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.00043 Score=60.99 Aligned_cols=27 Identities=44% Similarity=0.928 Sum_probs=24.0
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSD 34 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd 34 (122)
.|||||| || +..++|..+++|||.|+.
T Consensus 1311 ~kYHPDK---NP----EGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1311 AKYHPDK---NP----EGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHhCCCC---Cc----hHHHHHHHHHHHHHHHHH
Confidence 4899999 77 678999999999999983
No 63
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00078 Score=47.17 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=31.9
Q ss_pred ccCCCCCCCCCC--ChhHHHHHHHHHHHHHhcccccchhhcccC
Q 033295 2 KWHPDRSAKNPG--VAGEAKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 2 k~HPDkn~~~~~--~~~~a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
+.|||+.. ++. +...|.+.-.++++||.+|.||-+|+.|=.
T Consensus 37 kL~~d~~~-~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 37 KLHPDRPG-LSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hhCccccc-ccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56888744 222 223788889999999999999999999975
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0018 Score=47.37 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccchhhc
Q 033295 2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDENKRSM 40 (122)
Q Consensus 2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~kR~~ 40 (122)
-.|||| ||++.+-|+..|--|..||..|-|+.-|..
T Consensus 80 lVHPDK---N~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 80 LVHPDK---NPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred eecCCC---CcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 479999 555556899999999999999999985443
No 65
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0032 Score=44.73 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=35.6
Q ss_pred CccCCCCCCCCCC-ChhHHHHHHHHHHHHHhcccccchhhcccCCCC
Q 033295 1 MKWHPDRSAKNPG-VAGEAKCRFQQIQEAYSVLSDENKRSMYDAGLY 46 (122)
Q Consensus 1 lk~HPDkn~~~~~-~~~~a~~~F~~i~~AYevLsd~~kR~~YD~~~~ 46 (122)
++||||+..+.+. ++..+...+..++.||.+|.||-+|+.|=....
T Consensus 29 ~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 29 RAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred HhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 3699999875443 222355789999999999999999999876544
No 66
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=89.40 E-value=0.19 Score=43.48 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=24.4
Q ss_pred CchhhhhhHHHHHhcCceeeEeecCCC
Q 033295 75 DSFEDLQRMFVEMVDGMSFDFNYDPTD 101 (122)
Q Consensus 75 ~~~~~l~~~l~e~~~G~~~~~~~~~~~ 101 (122)
++.+++.++|+++|+|++++|++.|.+
T Consensus 658 dI~y~l~vtLEeLY~G~tKkIKitR~V 684 (871)
T TIGR03835 658 NLVYEEEVPQILFFNNQIKEIKYTRHT 684 (871)
T ss_pred ceEEecccCHHHHhCCCeEEEEEEEee
Confidence 577889999999999999999997765
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.56 E-value=0.29 Score=36.78 Aligned_cols=28 Identities=39% Similarity=0.679 Sum_probs=22.0
Q ss_pred ccCCCCCCCCCCChhHHHHHHHHHHHHHh-cccc
Q 033295 2 KWHPDRSAKNPGVAGEAKCRFQQIQEAYS-VLSD 34 (122)
Q Consensus 2 k~HPDkn~~~~~~~~~a~~~F~~i~~AYe-vLsd 34 (122)
++|||... + ++..++|..|-+||. ||+.
T Consensus 74 q~hpdsgs-~----~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 74 QVHPDSGS-E----EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HcCCCCCC-c----cccHHHHHHHHHHHHHHHHH
Confidence 79999853 2 256689999999999 8863
No 68
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=83.51 E-value=0.86 Score=18.97 Aligned_cols=13 Identities=38% Similarity=0.859 Sum_probs=11.0
Q ss_pred HHHHHHHHHhccc
Q 033295 21 RFQQIQEAYSVLS 33 (122)
Q Consensus 21 ~F~~i~~AYevLs 33 (122)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 5888999999875
No 69
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=79.06 E-value=1 Score=33.73 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=12.8
Q ss_pred ccccCCCccccCCCC
Q 033295 105 ACVNTSKGKAAKRGT 119 (122)
Q Consensus 105 ~~C~~C~G~G~~~~~ 119 (122)
+.|++|+|+|..+..
T Consensus 39 vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 39 VTCPTCQGTGRIPRE 53 (238)
T ss_pred CcCCCCcCCccCCcc
Confidence 489999999988764
No 70
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=77.36 E-value=1.6 Score=29.00 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=28.7
Q ss_pred CccCCCCCCCCCCChhHHHHHHHHHHHHHhcccccc
Q 033295 1 MKWHPDRSAKNPGVAGEAKCRFQQIQEAYSVLSDEN 36 (122)
Q Consensus 1 lk~HPDkn~~~~~~~~~a~~~F~~i~~AYevLsd~~ 36 (122)
++.|||.....|++++..++-++.|+.-.+.|..+.
T Consensus 20 ~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 20 FAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred HHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 367999888889887777888999998887776554
No 71
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=73.72 E-value=1.5 Score=25.87 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=16.6
Q ss_pred hhhHHHHHhcCceeeEeecCCCcccccccCCC
Q 033295 80 LQRMFVEMVDGMSFDFNYDPTDAQRACVNTSK 111 (122)
Q Consensus 80 l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~ 111 (122)
++|+|+|+.+|-.+. +|++|.
T Consensus 31 FeIsLeDl~~GE~VA-----------rCPSCS 51 (67)
T COG5216 31 FEISLEDLRNGEVVA-----------RCPSCS 51 (67)
T ss_pred eEEEHHHhhCCceEE-----------EcCCce
Confidence 568999999997643 788884
No 72
>PF06975 DUF1299: Protein of unknown function (DUF1299); InterPro: IPR010725 This entry represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be specific to Arabidopsis thaliana. Note that many proteins contain multiple copies of this region.
Probab=62.90 E-value=2.5 Score=23.14 Aligned_cols=11 Identities=64% Similarity=1.002 Sum_probs=9.7
Q ss_pred HHHHhcccccc
Q 033295 26 QEAYSVLSDEN 36 (122)
Q Consensus 26 ~~AYevLsd~~ 36 (122)
++||-+|||.+
T Consensus 10 qeayvilsdde 20 (47)
T PF06975_consen 10 QEAYVILSDDE 20 (47)
T ss_pred hhheeeccccc
Confidence 78999999875
No 73
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=60.77 E-value=7.1 Score=25.89 Aligned_cols=14 Identities=14% Similarity=0.026 Sum_probs=7.5
Q ss_pred ccccCCCccccCCC
Q 033295 105 ACVNTSKGKAAKRG 118 (122)
Q Consensus 105 ~~C~~C~G~G~~~~ 118 (122)
..|..|+|+|+...
T Consensus 42 v~C~~C~GsG~~~C 55 (111)
T PLN03165 42 QPCFPCSGTGAQVC 55 (111)
T ss_pred CCCCCCCCCCCcCC
Confidence 45666666665433
No 74
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=56.93 E-value=3 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=16.6
Q ss_pred chhhhhhHHHHHhcCceeeEe
Q 033295 76 SFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 76 ~~~~l~~~l~e~~~G~~~~~~ 96 (122)
...++.|+|.||+.|++..|.
T Consensus 2 L~~~~~I~l~~al~G~~i~i~ 22 (81)
T PF01556_consen 2 LYCTIPISLKEALLGGTISIP 22 (81)
T ss_dssp EEEEEEEEHHHHHH-EEEEEE
T ss_pred eEEEEEeCHHHHhCCCEEEEE
Confidence 456788999999999998873
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=56.17 E-value=7.4 Score=30.07 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcccccchhhcccC
Q 033295 18 AKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 18 a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
-.+.|++|.+||.||++..+|..+|.
T Consensus 35 ~~~~~k~i~ka~~i~~~~~~~~t~~~ 60 (335)
T KOG0724|consen 35 TEEEFKKIEKALAILDDDEPRRTPDS 60 (335)
T ss_pred HHHHHHHHHHHHHHHhccccccchhh
Confidence 45669999999999999777667665
No 76
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=55.29 E-value=8.2 Score=20.92 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=13.9
Q ss_pred ccccCCCccccCCCCCCC
Q 033295 105 ACVNTSKGKAAKRGTSRC 122 (122)
Q Consensus 105 ~~C~~C~G~G~~~~~~~~ 122 (122)
++|..|.+.|=+..+..|
T Consensus 2 ~kC~~CG~~GH~~t~k~C 19 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRC 19 (40)
T ss_pred ccccccccccccccCccC
Confidence 589999999877766554
No 77
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=7.1 Score=30.83 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=10.5
Q ss_pred ccccCCCccccCCCCCC
Q 033295 105 ACVNTSKGKAAKRGTSR 121 (122)
Q Consensus 105 ~~C~~C~G~G~~~~~~~ 121 (122)
..|.+|+|.|-++.++|
T Consensus 246 ~~C~tC~grG~k~C~TC 262 (406)
T KOG2813|consen 246 KECHTCKGRGKKPCTTC 262 (406)
T ss_pred ccCCcccCCCCcccccc
Confidence 45666666666666555
No 78
>PRK06835 DNA replication protein DnaC; Validated
Probab=50.00 E-value=9.1 Score=29.93 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=13.4
Q ss_pred cccCCCccccCCCCCC
Q 033295 106 CVNTSKGKAAKRGTSR 121 (122)
Q Consensus 106 ~C~~C~G~G~~~~~~~ 121 (122)
.|+.|+++|...+..|
T Consensus 100 ~Cp~C~dtG~i~~~~C 115 (329)
T PRK06835 100 TCPKCKDTGFINGKKC 115 (329)
T ss_pred CCCCCCCCCCcCCccc
Confidence 7999999999876544
No 79
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.79 E-value=10 Score=22.69 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=16.6
Q ss_pred hhhHHHHHhcCceeeEeecCCCcccccccCCC
Q 033295 80 LQRMFVEMVDGMSFDFNYDPTDAQRACVNTSK 111 (122)
Q Consensus 80 l~~~l~e~~~G~~~~~~~~~~~~~~~~C~~C~ 111 (122)
.+|+++|+.+|-.+. +|++|.
T Consensus 31 f~It~edL~~ge~Va-----------~CpsCS 51 (67)
T KOG2923|consen 31 FQITLEDLENGEDVA-----------RCPSCS 51 (67)
T ss_pred eeecHHHHhCCCeee-----------cCCCce
Confidence 678999999997643 688874
No 80
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.54 E-value=18 Score=27.35 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=7.4
Q ss_pred CccCCCCCC
Q 033295 1 MKWHPDRSA 9 (122)
Q Consensus 1 lk~HPDkn~ 9 (122)
++||||++.
T Consensus 226 ~~~HPDk~~ 234 (267)
T PRK09430 226 SEHHPDKLV 234 (267)
T ss_pred HHhCcCCCC
Confidence 479999975
No 81
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=47.53 E-value=19 Score=25.25 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhcccccchhhc
Q 033295 16 GEAKCRFQQIQEAYSVLSDENKRSM 40 (122)
Q Consensus 16 ~~a~~~F~~i~~AYevLsd~~kR~~ 40 (122)
++.+.+...|.++.++|.||-++.+
T Consensus 62 eEetkrLa~ireeLE~l~dP~RkEv 86 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADPMRKEV 86 (159)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHH
Confidence 4778889999999999999977654
No 82
>PRK14291 chaperone protein DnaJ; Provisional
Probab=47.21 E-value=9.3 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.6
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|+..++.|+|.||+.|+++.|..
T Consensus 274 G~DL~~~~~Isl~eAl~G~~~~i~~ 298 (382)
T PRK14291 274 GDNLYLDVNITVAEAVLGTELEVPL 298 (382)
T ss_pred cCCeEEEEEeeHHHHhCCCEEEEec
Confidence 4478889999999999999988765
No 83
>PRK14284 chaperone protein DnaJ; Provisional
Probab=46.71 E-value=9.2 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.4
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++.++.|+|.+|+.|.++.|..
T Consensus 277 G~DL~~~~~Isl~eAl~G~~~~v~t 301 (391)
T PRK14284 277 GDDLILELPIGFVDAALGMKKEIPT 301 (391)
T ss_pred cCCEEEEEEecHHHHhCCCeEEEee
Confidence 4578889999999999999988853
No 84
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=14 Score=29.64 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=9.0
Q ss_pred ccccCCCccccCCC
Q 033295 105 ACVNTSKGKAAKRG 118 (122)
Q Consensus 105 ~~C~~C~G~G~~~~ 118 (122)
+.|++|+|+|-.-.
T Consensus 184 ~~C~~C~G~G~~i~ 197 (371)
T COG0484 184 QTCPTCNGTGKIIK 197 (371)
T ss_pred EECCCCccceeECC
Confidence 46777777776543
No 85
>PRK14282 chaperone protein DnaJ; Provisional
Probab=45.00 E-value=10 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=21.5
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|+..++.|+|.||+.|.++.|..
T Consensus 275 G~DL~~~~~Isl~eAl~G~~~~i~~ 299 (369)
T PRK14282 275 GSDLIYDVTIDYLQAILGTTVEVPL 299 (369)
T ss_pred cCCEEEEEEeCHHHHhCCCEEEEeC
Confidence 4578889999999999999988765
No 86
>PRK14299 chaperone protein DnaJ; Provisional
Probab=41.53 E-value=12 Score=28.60 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|+++.|..
T Consensus 200 G~DL~~~~~Isl~eAl~G~~~~v~t 224 (291)
T PRK14299 200 GDDLYATVDVPAPIAVVGGKVRVMT 224 (291)
T ss_pred CCEEEEEEecCHHHHhCCCEEEEEC
Confidence 4578899999999999999876654
No 87
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=39.97 E-value=21 Score=20.95 Aligned_cols=13 Identities=8% Similarity=-0.003 Sum_probs=8.7
Q ss_pred ccccCCCccccCC
Q 033295 105 ACVNTSKGKAAKR 117 (122)
Q Consensus 105 ~~C~~C~G~G~~~ 117 (122)
..|+.|+|+|..-
T Consensus 42 ~~C~~C~G~G~~i 54 (66)
T PF00684_consen 42 QTCPKCGGTGKII 54 (66)
T ss_dssp EE-TTTSSSSEE-
T ss_pred EECCCCcceeeEE
Confidence 4788888888764
No 88
>PRK14279 chaperone protein DnaJ; Provisional
Probab=39.82 E-value=14 Score=29.59 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=21.0
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 292 G~DL~~~~~Isl~eAl~G~~~~v~~ 316 (392)
T PRK14279 292 GDDLTVTVPVSFTELALGSTLSVPT 316 (392)
T ss_pred cCcEEEEEEccHHHHcCCceEEEEc
Confidence 4578889999999999999877644
No 89
>PRK14295 chaperone protein DnaJ; Provisional
Probab=39.43 E-value=15 Score=29.29 Aligned_cols=24 Identities=13% Similarity=0.052 Sum_probs=20.7
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++.++.|+|.+|+.|.++.|.
T Consensus 285 G~DL~~~~~Isl~eAl~G~~~~I~ 308 (389)
T PRK14295 285 GDNLTVTVPVTFPEAALGAEVRVP 308 (389)
T ss_pred cCCEEEEEeecHHHHhCCCeEEEE
Confidence 457888999999999999988773
No 90
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=38.60 E-value=15 Score=26.54 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=7.1
Q ss_pred ccccCCCccccC
Q 033295 105 ACVNTSKGKAAK 116 (122)
Q Consensus 105 ~~C~~C~G~G~~ 116 (122)
..|+.|+|+|..
T Consensus 100 ~~C~~C~G~G~~ 111 (186)
T TIGR02642 100 CKCPRCRGTGLI 111 (186)
T ss_pred CcCCCCCCeeEE
Confidence 356666666644
No 91
>PRK14276 chaperone protein DnaJ; Provisional
Probab=37.54 E-value=16 Score=29.04 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.||+.|.++.|..
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~v~t 293 (380)
T PRK14276 269 GSTIYYTLPISFVQAALGDTVEVPT 293 (380)
T ss_pred cceEEEEEecCHHHHhCCCeEEEEc
Confidence 4578889999999999999887754
No 92
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=37.37 E-value=16 Score=28.64 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.8
Q ss_pred cCCchhhhhhHHHHHhcCceeeE
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDF 95 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~ 95 (122)
+.|+...+.|+|.||+.|+++.|
T Consensus 266 g~DL~~~~~isl~eAl~G~~~~i 288 (354)
T TIGR02349 266 GNDLYIEVPISFTQAILGGEIEV 288 (354)
T ss_pred cCCEEEEEEeCHHHHhCCCeEEE
Confidence 44788899999999999998776
No 93
>PRK14287 chaperone protein DnaJ; Provisional
Probab=36.98 E-value=18 Score=28.67 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 261 G~DL~~~~~Isl~eAl~G~~~~i~~ 285 (371)
T PRK14287 261 GDDIYCEMPLTFPQVALGDEIEVPT 285 (371)
T ss_pred cCCeEEEEeccHHHHhCCCEEEEEc
Confidence 4578889999999999999887754
No 94
>PRK14300 chaperone protein DnaJ; Provisional
Probab=36.96 E-value=17 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.5
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 264 G~Dl~~~~~Isl~~Al~G~~~~i~~ 288 (372)
T PRK14300 264 GANLHCKLPISFVNAALGGEIEVPV 288 (372)
T ss_pred cCCEEEEEecCHHHHhCCCEEEEec
Confidence 4578889999999999999888765
No 95
>PRK14280 chaperone protein DnaJ; Provisional
Probab=36.83 E-value=17 Score=28.81 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.8
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.||+.|.++.|.
T Consensus 266 G~DL~~~~~Isl~eAl~G~~~~i~ 289 (376)
T PRK14280 266 GDDIYCEMPLTFAQAALGDEIEVP 289 (376)
T ss_pred cCCEEEEEecCHHHHhCCCEEEEe
Confidence 457888999999999999988765
No 96
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=36.55 E-value=26 Score=19.76 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcccccchhhccc
Q 033295 18 AKCRFQQIQEAYSVLSDENKRSMYD 42 (122)
Q Consensus 18 a~~~F~~i~~AYevLsd~~kR~~YD 42 (122)
..+..+.|.+.+..|++.+|....+
T Consensus 28 ~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 28 VTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4678899999999999887755433
No 97
>PRK14294 chaperone protein DnaJ; Provisional
Probab=36.12 E-value=18 Score=28.60 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.+|+.|.++.|.
T Consensus 263 G~DL~~~~~Isl~eAl~G~~~~i~ 286 (366)
T PRK14294 263 GNDVHCKVPISFVQAALGAQIEVP 286 (366)
T ss_pred CCCEEEEEEeCHHHHhCCCeEEEE
Confidence 457889999999999999998876
No 98
>PRK14285 chaperone protein DnaJ; Provisional
Probab=35.93 E-value=18 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++.++.|+|.+|+.|.++.|..
T Consensus 265 G~dL~~~~~Isl~eAl~G~~~~i~t 289 (365)
T PRK14285 265 GKDLYATLPISFTQAALGKEIKIQT 289 (365)
T ss_pred ccceEEEEecCHHHHhCCCEEEEEC
Confidence 4478889999999999999887655
No 99
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=35.57 E-value=29 Score=20.47 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcccccchhhcccC
Q 033295 18 AKCRFQQIQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 18 a~~~F~~i~~AYevLsd~~kR~~YD~ 43 (122)
..+.-+.|.+.+..|++.+|...++.
T Consensus 29 ~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 29 NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678889999999999888665443
No 100
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=35.53 E-value=24 Score=28.60 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=11.5
Q ss_pred ccccCCCccccCCC
Q 033295 105 ACVNTSKGKAAKRG 118 (122)
Q Consensus 105 ~~C~~C~G~G~~~~ 118 (122)
..|+.|+|+|....
T Consensus 391 ~~Cp~C~G~G~v~s 404 (414)
T TIGR00757 391 TVCPHCSGTGIVKT 404 (414)
T ss_pred CCCCCCcCeeEEcc
Confidence 57999999997643
No 101
>PRK14281 chaperone protein DnaJ; Provisional
Probab=34.33 E-value=19 Score=28.78 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 285 G~DL~~~~~Isl~eAl~G~~~~i~t 309 (397)
T PRK14281 285 GDDVIYNLAVSYPDLVLGTKVEVPT 309 (397)
T ss_pred cCCEEEEEEecHHHHhcCCeEEeec
Confidence 4578889999999999999887763
No 102
>PRK14288 chaperone protein DnaJ; Provisional
Probab=34.16 E-value=18 Score=28.59 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=20.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.||+.|.++.|.
T Consensus 257 G~DL~~~~~Isl~eAllG~~i~v~ 280 (369)
T PRK14288 257 GCDLFIEAPVFFTTIALGHTIKVP 280 (369)
T ss_pred CCEEEEEEecCHHHHhcCCEEEee
Confidence 457889999999999999986553
No 103
>PRK14298 chaperone protein DnaJ; Provisional
Probab=34.08 E-value=18 Score=28.75 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.||+.|.++.|..
T Consensus 264 G~DL~~~~~Isl~eAl~G~~~~i~t 288 (377)
T PRK14298 264 GDDIISEIPISFTQAALGADIMVPT 288 (377)
T ss_pred cCcEEEEEEeCHHHHhCCCeEEEec
Confidence 4578889999999999999887743
No 104
>PRK14290 chaperone protein DnaJ; Provisional
Probab=33.89 E-value=19 Score=28.38 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.5
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|+...+.|+|.+|+.|..+.|..
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~I~~ 293 (365)
T PRK14290 269 NDDLYVDQKINFPQAALGGEIEIKL 293 (365)
T ss_pred cCCEEEEEEeCHHHHhCCCEEEEEc
Confidence 4578889999999999999988764
No 105
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=33.86 E-value=28 Score=26.51 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcc
Q 033295 20 CRFQQIQEAYSVL 32 (122)
Q Consensus 20 ~~F~~i~~AYevL 32 (122)
.+.++||||+|+|
T Consensus 128 RRLkKVNEAFE~L 140 (284)
T KOG3960|consen 128 RRLKKVNEAFETL 140 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 4599999999987
No 106
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=33.38 E-value=25 Score=17.73 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=6.9
Q ss_pred CCccccCCCCCCC
Q 033295 110 SKGKAAKRGTSRC 122 (122)
Q Consensus 110 C~G~G~~~~~~~~ 122 (122)
|.|.|+.-+..||
T Consensus 2 csgr~srcpp~cc 14 (33)
T PF08094_consen 2 CSGRGSRCPPQCC 14 (33)
T ss_dssp -B-TTSSSSSSB-
T ss_pred CcCCCCCCCchhe
Confidence 6677776666665
No 107
>PRK14297 chaperone protein DnaJ; Provisional
Probab=32.55 E-value=21 Score=28.34 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 271 G~DL~~~~~Isl~eAl~G~~~~i~~ 295 (380)
T PRK14297 271 GFDIYIDKHISFAKAALGTEIKVPT 295 (380)
T ss_pred CCCEEEEEEeCHHHHhCCCcEEEEc
Confidence 4578888999999999999887654
No 108
>PRK14278 chaperone protein DnaJ; Provisional
Probab=32.34 E-value=23 Score=28.16 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.9
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.+|+.|.++.|.
T Consensus 262 G~DL~~~~~Isl~eAl~G~~~~i~ 285 (378)
T PRK14278 262 GDDLHCTVSVPMVDAALGTTVTVE 285 (378)
T ss_pred CCCEEEEEecCHHHHhcCCeEEEe
Confidence 447888999999999999988776
No 109
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=32.26 E-value=21 Score=27.40 Aligned_cols=25 Identities=12% Similarity=-0.183 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+++.|+++.|..
T Consensus 208 g~DL~~~~~Isl~~al~G~~~~i~~ 232 (306)
T PRK10266 208 GQDLEIVVPLAPWEAALGAKVTVPT 232 (306)
T ss_pred CCceEEEEecCHHHHhCCCEEEeeC
Confidence 3478889999999999999987755
No 110
>PF14369 zf-RING_3: zinc-finger
Probab=32.15 E-value=51 Score=17.04 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=12.4
Q ss_pred ceeeEeecCCCcccccccCCCc
Q 033295 91 MSFDFNYDPTDAQRACVNTSKG 112 (122)
Q Consensus 91 ~~~~~~~~~~~~~~~~C~~C~G 112 (122)
+.+.|.+.........|+.|+|
T Consensus 8 C~~~V~~~~~~~~~~~CP~C~~ 29 (35)
T PF14369_consen 8 CNRFVRIAPSPDSDVACPRCHG 29 (35)
T ss_pred CCCEeEeCcCCCCCcCCcCCCC
Confidence 4455565432222346999996
No 111
>PRK14286 chaperone protein DnaJ; Provisional
Probab=31.90 E-value=21 Score=28.25 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=20.5
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.+|+.|.++.|.
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~i~ 292 (372)
T PRK14286 269 GNDLILVRKISLAQAILGAEIEVP 292 (372)
T ss_pred cCCEEEEEEECHHHHhCCCEEEEe
Confidence 457888999999999999988773
No 112
>PRK10767 chaperone protein DnaJ; Provisional
Probab=31.57 E-value=23 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=20.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeE
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDF 95 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~ 95 (122)
+.|++..+.|+|.+|+.|.++.|
T Consensus 261 G~DL~~~~~Isl~eAl~G~~~~i 283 (371)
T PRK10767 261 GNDLYCEVPISFTTAALGGEIEV 283 (371)
T ss_pred cCCEEEEEEeCHHHHhCCCeEEE
Confidence 44788899999999999998877
No 113
>PRK11712 ribonuclease G; Provisional
Probab=31.35 E-value=35 Score=28.29 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=11.7
Q ss_pred ccccCCCccccCCC
Q 033295 105 ACVNTSKGKAAKRG 118 (122)
Q Consensus 105 ~~C~~C~G~G~~~~ 118 (122)
..|+.|+|+|....
T Consensus 403 ~~Cp~C~G~G~v~s 416 (489)
T PRK11712 403 GECPTCHGRGTVKT 416 (489)
T ss_pred CCCCCCCCCCCcCC
Confidence 68999999997654
No 114
>PRK14277 chaperone protein DnaJ; Provisional
Probab=30.75 E-value=25 Score=28.00 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=20.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.||+.|.++.|.
T Consensus 278 G~DL~~~~~Isl~eAl~G~~~~i~ 301 (386)
T PRK14277 278 GYNVYLEMPITFTDAALGGEIEIP 301 (386)
T ss_pred cCCEEEEEEcCHHHHhCCCEEEEE
Confidence 447888899999999999988773
No 115
>PRK14292 chaperone protein DnaJ; Provisional
Probab=29.98 E-value=28 Score=27.51 Aligned_cols=24 Identities=8% Similarity=0.027 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.||+.|..+.|.
T Consensus 261 g~dL~~~~~isl~eAl~G~~~~i~ 284 (371)
T PRK14292 261 QEHLIYEARIGFAKAALGGQITVP 284 (371)
T ss_pred hhceeEEeccCHHHHhCCCeEEEE
Confidence 447888999999999999998877
No 116
>PRK14301 chaperone protein DnaJ; Provisional
Probab=29.89 E-value=26 Score=27.80 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=20.7
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++.++.|+|.+|+.|.++.|.
T Consensus 263 G~DL~~~~~Isl~eAl~G~~~~v~ 286 (373)
T PRK14301 263 GQDLVVTQEISFVQAALGDRIEVP 286 (373)
T ss_pred cCcEEEEEEecHHHHhCCCeEEEe
Confidence 457888999999999999988774
No 117
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=29.71 E-value=23 Score=28.67 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.4
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.+|+.|.++.|.
T Consensus 273 G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 273 GGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred CCeEEEEEeCCHHHHhcCCEEEee
Confidence 457889999999999999987664
No 118
>PRK14289 chaperone protein DnaJ; Provisional
Probab=29.71 E-value=28 Score=27.70 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=21.2
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.|++..+.|+|.+|+.|.++.|..
T Consensus 277 g~DL~~~~~Isl~eAl~G~~~~i~~ 301 (386)
T PRK14289 277 ENDLIYNLLLSVPTAALGGAVEVPT 301 (386)
T ss_pred ccceeEEeccCHHHHhCCCeEEeec
Confidence 3478888999999999999988765
No 119
>PRK14293 chaperone protein DnaJ; Provisional
Probab=27.83 E-value=27 Score=27.62 Aligned_cols=25 Identities=4% Similarity=0.238 Sum_probs=21.1
Q ss_pred cCCchhhhhhHHHHHhcCceeeEee
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFNY 97 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~~ 97 (122)
+.+++.++.|+|.+|+.|.++.|..
T Consensus 266 g~DL~~~~~Isl~eAl~G~~~~i~~ 290 (374)
T PRK14293 266 GINILSEIKISYLQAILGDTLEVDT 290 (374)
T ss_pred hhceEEEeccCHHHHhCCCEEEecC
Confidence 3478889999999999999987765
No 120
>PRK14283 chaperone protein DnaJ; Provisional
Probab=27.45 E-value=30 Score=27.44 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=20.9
Q ss_pred cCCchhhhhhHHHHHhcCceeeEe
Q 033295 73 EGDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 73 ~~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
+.|++..+.|+|.+|+.|..+.|.
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~i~ 292 (378)
T PRK14283 269 GANLYYEKPISFVQAALGDTVDVP 292 (378)
T ss_pred cCCEEEEEecCHHHHhcCCeEEEE
Confidence 447888999999999999998776
No 121
>PRK14296 chaperone protein DnaJ; Provisional
Probab=26.50 E-value=33 Score=27.24 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=20.2
Q ss_pred CCchhhhhhHHHHHhcCceeeEe
Q 033295 74 GDSFEDLQRMFVEMVDGMSFDFN 96 (122)
Q Consensus 74 ~~~~~~l~~~l~e~~~G~~~~~~ 96 (122)
.|++.++.|||.||+.|.++.|.
T Consensus 274 ~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 274 NDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred CcEEEEEecCHHHHhCCCEEEee
Confidence 47889999999999999987765
No 122
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=26.26 E-value=31 Score=27.44 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=14.5
Q ss_pred HHHHHhcccccchhhcccC
Q 033295 25 IQEAYSVLSDENKRSMYDA 43 (122)
Q Consensus 25 i~~AYevLsd~~kR~~YD~ 43 (122)
|++|-++|- -+||++||-
T Consensus 94 Ln~aA~~L~-VqKRRIYDI 111 (354)
T KOG2577|consen 94 LNKAAEVLN-VQKRRIYDI 111 (354)
T ss_pred HHHHHHHhc-cccceeeeh
Confidence 577778885 569999996
No 123
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=26.08 E-value=24 Score=21.10 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=10.9
Q ss_pred HHHHhccc--c--cchhhcccC
Q 033295 26 QEAYSVLS--D--ENKRSMYDA 43 (122)
Q Consensus 26 ~~AYevLs--d--~~kR~~YD~ 43 (122)
.+|-+.|. + .++|+.||-
T Consensus 28 ~~ia~~l~~~~~k~~~RRlYDI 49 (71)
T PF02319_consen 28 NEIADKLISENVKTQRRRLYDI 49 (71)
T ss_dssp HHHHHHCHHHCCHHHCHHHHHH
T ss_pred HHHHHHHcccccccccchhhHH
Confidence 44445551 2 378999984
No 124
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=25.65 E-value=33 Score=30.58 Aligned_cols=20 Identities=10% Similarity=0.340 Sum_probs=15.4
Q ss_pred eEeecCCCcccccccCCCccccC
Q 033295 94 DFNYDPTDAQRACVNTSKGKAAK 116 (122)
Q Consensus 94 ~~~~~~~~~~~~~C~~C~G~G~~ 116 (122)
.|+++.+. .||..|+|-|..
T Consensus 723 rFSFNvkG---GRCe~C~GdG~i 742 (935)
T COG0178 723 RFSFNVKG---GRCEACQGDGVI 742 (935)
T ss_pred cccccCCC---cCCccccCCceE
Confidence 66777664 699999999864
No 125
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.61 E-value=37 Score=30.42 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=15.4
Q ss_pred eeEeecCCCcccccccCCCccccCC
Q 033295 93 FDFNYDPTDAQRACVNTSKGKAAKR 117 (122)
Q Consensus 93 ~~~~~~~~~~~~~~C~~C~G~G~~~ 117 (122)
..|+++.. ..+|+.|+|.|...
T Consensus 728 ~~FSfN~~---~G~C~~C~G~G~~~ 749 (924)
T TIGR00630 728 GRFSFNVK---GGRCEACQGDGVIK 749 (924)
T ss_pred hhcCCCCC---CCCCCCCccceEEE
Confidence 35566543 36899999999753
No 126
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.41 E-value=61 Score=17.97 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcccccchhhccc
Q 033295 18 AKCRFQQIQEAYSVLSDENKRSMYD 42 (122)
Q Consensus 18 a~~~F~~i~~AYevLsd~~kR~~YD 42 (122)
..+..+.|...+..|++.++...++
T Consensus 28 ~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 28 VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4578888999999999877755443
No 127
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=22.00 E-value=1.5e+02 Score=19.21 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.8
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033295 3 WHPDRSAKNPGVAGEAKCRFQQIQEAYSVLS 33 (122)
Q Consensus 3 ~HPDkn~~~~~~~~~a~~~F~~i~~AYevLs 33 (122)
.||.-+. .|+ .+....+++|.+|-++|.
T Consensus 68 NHPsG~~-~PS--~~D~~~T~~l~~~~~~l~ 95 (113)
T cd08071 68 NHPSGDP-TPS--REDIELTKRLKEAGELLG 95 (113)
T ss_pred eCCCCCC-CCC--HHHHHHHHHHHHHHHHCC
Confidence 5898877 666 356677888998888764
No 128
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=21.73 E-value=76 Score=17.32 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhccc
Q 033295 17 EAKCRFQQIQEAYSVLS 33 (122)
Q Consensus 17 ~a~~~F~~i~~AYevLs 33 (122)
+--+.|++|++|.|++.
T Consensus 19 e~yE~l~kine~LEL~d 35 (42)
T PF07710_consen 19 ERYEMLKKINEALELMD 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 55688999999999653
No 129
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=21.42 E-value=1.1e+02 Score=19.96 Aligned_cols=21 Identities=48% Similarity=0.830 Sum_probs=16.0
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033295 3 WHPDRSAKNPGVAGEAKCRFQQIQEAYSV 31 (122)
Q Consensus 3 ~HPDkn~~~~~~~~~a~~~F~~i~~AYev 31 (122)
+||+. | ++..+-.+|..||.-
T Consensus 66 ~~~~~----~----~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 66 VHPDT----P----AAEARIEAIREAYKQ 86 (104)
T ss_pred EeCCC----h----HHHHHHHHHHHHHHH
Confidence 57775 3 567889999999963
No 130
>smart00398 HMG high mobility group.
Probab=21.28 E-value=74 Score=17.85 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcccccchhhccc
Q 033295 18 AKCRFQQIQEAYSVLSDENKRSMYD 42 (122)
Q Consensus 18 a~~~F~~i~~AYevLsd~~kR~~YD 42 (122)
..+..+.|...+..|++.++....+
T Consensus 29 ~~~i~~~~~~~W~~l~~~ek~~y~~ 53 (70)
T smart00398 29 NAEISKKLGERWKLLSEEEKAPYEE 53 (70)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567788999999999877655433
No 131
>PRK06921 hypothetical protein; Provisional
Probab=20.71 E-value=40 Score=25.35 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=10.6
Q ss_pred ccccCCCccccC
Q 033295 105 ACVNTSKGKAAK 116 (122)
Q Consensus 105 ~~C~~C~G~G~~ 116 (122)
-.|+.|+++|..
T Consensus 33 ~~Cp~C~dtG~i 44 (266)
T PRK06921 33 YDCPKCKDRGII 44 (266)
T ss_pred CCCCCCCCCEEE
Confidence 369999999987
No 132
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=20.47 E-value=58 Score=24.99 Aligned_cols=8 Identities=50% Similarity=1.581 Sum_probs=7.1
Q ss_pred ccCCCCCC
Q 033295 2 KWHPDRSA 9 (122)
Q Consensus 2 k~HPDkn~ 9 (122)
+|||.||+
T Consensus 265 QWHPEKna 272 (340)
T KOG1559|consen 265 QWHPEKNA 272 (340)
T ss_pred eecCccCc
Confidence 79999976
Done!