Your job contains 1 sequence.
>033297
MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT
DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK
RV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033297
(122 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044029 - symbol:AT2G43640 "AT2G43640" species... 320 9.1e-29 1
MGI|MGI:107169 - symbol:Srp14 "signal recognition particl... 188 8.8e-15 1
RGD|1308506 - symbol:Srp14 "signal recognition particle 1... 188 8.8e-15 1
UNIPROTKB|P37108 - symbol:SRP14 "Signal recognition parti... 182 3.8e-14 1
UNIPROTKB|F1SS29 - symbol:LOC100620327 "Uncharacterized p... 179 7.9e-14 1
UNIPROTKB|A6QQL9 - symbol:SRP14 "Signal recognition parti... 177 1.3e-13 1
UNIPROTKB|J9P615 - symbol:SRP14 "Signal recognition parti... 177 1.3e-13 1
UNIPROTKB|P16255 - symbol:SRP14 "Signal recognition parti... 177 1.3e-13 1
UNIPROTKB|Q5ZIE3 - symbol:SRP14 "Uncharacterized protein"... 175 2.1e-13 1
ZFIN|ZDB-GENE-050913-131 - symbol:srp14 "signal recogniti... 173 3.4e-13 1
UNIPROTKB|F1PJ50 - symbol:F1PJ50 "Uncharacterized protein... 171 5.6e-13 1
UNIPROTKB|H0YLA2 - symbol:SRP14 "Signal recognition parti... 152 5.8e-11 1
UNIPROTKB|E2QS25 - symbol:SRP14 "Uncharacterized protein"... 145 3.2e-10 1
DICTYBASE|DDB_G0273977 - symbol:srp14-2 "signal recogniti... 142 6.6e-10 1
DICTYBASE|DDB_G0272590 - symbol:srp14-1 "signal recogniti... 142 6.6e-10 1
WB|WBGene00017799 - symbol:F25G6.8 species:6239 "Caenorha... 101 1.5e-05 1
>TAIR|locus:2044029 [details] [associations]
symbol:AT2G43640 "AT2G43640" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA;ISS] [GO:0006605
"protein targeting" evidence=ISS] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0045900
"negative regulation of translational elongation" evidence=IEA]
[GO:0048500 "signal recognition particle" evidence=IEA]
InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0045900 EMBL:AC002333
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10
SUPFAM:SSF54762 EMBL:Y10116 EMBL:BT003088 EMBL:AK227403
EMBL:AY088850 IPI:IPI00534281 PIR:F84868 RefSeq:NP_001078050.1
RefSeq:NP_181892.1 UniGene:At.20529 UniGene:At.46807
ProteinModelPortal:O04421 SMR:O04421 IntAct:O04421 STRING:O04421
PaxDb:O04421 PRIDE:O04421 EnsemblPlants:AT2G43640.1
EnsemblPlants:AT2G43640.2 GeneID:818966 KEGG:ath:AT2G43640
TAIR:At2g43640 eggNOG:NOG237715 HOGENOM:HOG000184883
InParanoid:O04421 KO:K03104 OMA:SFEPADN PhylomeDB:O04421
ProtClustDB:CLSN2683081 Genevestigator:O04421 GermOnline:AT2G43640
GO:GO:0030942 PANTHER:PTHR12013 Uniprot:O04421
Length = 121
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 61/93 (65%), Positives = 73/93 (78%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAGEPVEYRCLIRAT 60
M LLQ DPFLNELTSMFE++++KGSVWVT +++ GE +EYRCLIRAT
Sbjct: 1 MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60
Query: 61 DGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
DGK+ +ST+VGAKDHQRFQASYAT+LKAHM AL
Sbjct: 61 DGKKTVSTSVGAKDHQRFQASYATILKAHMTAL 93
>MGI|MGI:107169 [details] [associations]
symbol:Srp14 "signal recognition particle 14" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=ISO] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=ISO] [GO:0045047 "protein
targeting to ER" evidence=ISO] [GO:0048500 "signal recognition
particle" evidence=IEA] InterPro:IPR003210 InterPro:IPR009018
Pfam:PF02290 ProDom:PD009170 MGI:MGI:107169 GO:GO:0042493
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 PDB:1914 PDBsum:1914
eggNOG:NOG237715 HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN
GO:GO:0030942 PANTHER:PTHR12013 CTD:6727
GeneTree:ENSGT00390000008496 HOVERGEN:HBG057435 OrthoDB:EOG415GG0
EMBL:M29264 EMBL:AK019310 EMBL:AK156845 EMBL:AK167821 EMBL:AK168144
EMBL:BC021537 IPI:IPI00132418 PIR:B34501 RefSeq:NP_033299.1
RefSeq:XP_003086285.1 UniGene:Mm.363404 ProteinModelPortal:P16254
SMR:P16254 STRING:P16254 PhosphoSite:P16254 PaxDb:P16254
PRIDE:P16254 Ensembl:ENSMUST00000009693 GeneID:100504988
GeneID:20813 KEGG:mmu:100504988 KEGG:mmu:20813 InParanoid:P16254
EvolutionaryTrace:P16254 NextBio:299537 Bgee:P16254
CleanEx:MM_SRP14 Genevestigator:P16254
GermOnline:ENSMUSG00000009549 Uniprot:P16254
Length = 110
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 40/94 (42%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP E +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>RGD|1308506 [details] [associations]
symbol:Srp14 "signal recognition particle 14" species:10116
"Rattus norvegicus" [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA;ISO] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] [GO:0042493 "response to drug" evidence=IEA;ISO]
[GO:0045047 "protein targeting to ER" evidence=ISO]
InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170
RGD:1308506 GO:GO:0042493 EMBL:CH473949 GO:GO:0045900 GO:GO:0008312
GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10 SUPFAM:SSF54762
eggNOG:NOG237715 HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN
GO:GO:0030942 PANTHER:PTHR12013 CTD:6727
GeneTree:ENSGT00390000008496 HOVERGEN:HBG057435 OrthoDB:EOG415GG0
EMBL:BC166931 IPI:IPI00373109 RefSeq:NP_001099967.1 UniGene:Rn.1668
SMR:B2RYW7 STRING:B2RYW7 Ensembl:ENSRNOT00000009866 GeneID:296076
KEGG:rno:296076 UCSC:RGD:1308506 NextBio:640528
Genevestigator:B2RYW7 Uniprot:B2RYW7
Length = 110
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 40/94 (42%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP E +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|P37108 [details] [associations]
symbol:SRP14 "Signal recognition particle 14 kDa protein"
species:9606 "Homo sapiens" [GO:0008312 "7S RNA binding"
evidence=IEA] [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IDA] [GO:0042493
"response to drug" evidence=IDA] [GO:0045047 "protein targeting to
ER" evidence=IMP] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=TAS] [GO:0006613 "cotranslational
protein targeting to membrane" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0005829
GO:GO:0042493 GO:GO:0006412 TCDB:3.A.5.9.1 EMBL:CH471125
GO:GO:0045900 EMBL:AC025168 GO:GO:0008312 GO:GO:0006614 PDB:1RY1
PDBsum:1RY1 GO:GO:0005786 Gene3D:3.30.720.10 SUPFAM:SSF54762
PDB:1E8O PDB:1E8S PDBsum:1E8O PDBsum:1E8S eggNOG:NOG237715
HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN GO:GO:0030942
PANTHER:PTHR12013 CTD:6727 HOVERGEN:HBG057435 OrthoDB:EOG415GG0
EMBL:X73459 EMBL:U07857 EMBL:AB061546 EMBL:AB451391 EMBL:BC035495
EMBL:BC071716 EMBL:BC100031 IPI:IPI00293434 PIR:A56062 PIR:S34196
RefSeq:NP_003125.3 UniGene:Hs.533732 ProteinModelPortal:P37108
SMR:P37108 DIP:DIP-6152N IntAct:P37108 MINT:MINT-1413971
STRING:P37108 PhosphoSite:P37108 DMDM:116242801 SWISS-2DPAGE:P37108
PaxDb:P37108 PeptideAtlas:P37108 PRIDE:P37108 DNASU:6727
Ensembl:ENST00000267884 GeneID:6727 KEGG:hsa:6727 UCSC:uc001zkq.2
GeneCards:GC15M040327 HGNC:HGNC:11299 MIM:600708 neXtProt:NX_P37108
PharmGKB:PA36123 InParanoid:P37108 PhylomeDB:P37108 ChiTaRS:SRP14
EvolutionaryTrace:P37108 GenomeRNAi:6727 NextBio:26240 Bgee:P37108
CleanEx:HS_SRP14 Genevestigator:P37108 GermOnline:ENSG00000140319
Uniprot:P37108
Length = 136
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|F1SS29 [details] [associations]
symbol:LOC100620327 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0045900
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10
SUPFAM:SSF54762 KO:K03104 OMA:SFEPADN GO:GO:0030942
PANTHER:PTHR12013 GeneTree:ENSGT00390000008496 EMBL:CU407289
EMBL:FP565907 RefSeq:XP_003121650.1 RefSeq:XP_003353455.1
Ensembl:ENSSSCT00000005284 Ensembl:ENSSSCT00000029256
GeneID:100522176 GeneID:100620327 KEGG:ssc:100522176
KEGG:ssc:100620327 Uniprot:F1SS29
Length = 110
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 39/94 (41%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|A6QQL9 [details] [associations]
symbol:SRP14 "Signal recognition particle 14 kDa protein"
species:9913 "Bos taurus" [GO:0042493 "response to drug"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0042493
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 eggNOG:NOG237715
HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN GO:GO:0030942
PANTHER:PTHR12013 EMBL:BC149893 IPI:IPI00707433
RefSeq:NP_001093820.1 UniGene:Bt.47373 ProteinModelPortal:A6QQL9
STRING:A6QQL9 Ensembl:ENSBTAT00000019085 GeneID:512792
KEGG:bta:512792 CTD:6727 GeneTree:ENSGT00390000008496
HOVERGEN:HBG057435 InParanoid:A6QQL9 OrthoDB:EOG415GG0
NextBio:20870559 Uniprot:A6QQL9
Length = 110
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 39/94 (41%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|J9P615 [details] [associations]
symbol:SRP14 "Signal recognition particle 14 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0005786 "signal
recognition particle, endoplasmic reticulum targeting"
evidence=IEA] InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290
ProDom:PD009170 GO:GO:0045900 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 Gene3D:3.30.720.10 SUPFAM:SSF54762 OMA:SFEPADN
GO:GO:0030942 PANTHER:PTHR12013 GeneTree:ENSGT00390000008496
EMBL:AAEX03016063 ProteinModelPortal:J9P615
Ensembl:ENSCAFT00000050158 Uniprot:J9P615
Length = 110
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 39/94 (41%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|P16255 [details] [associations]
symbol:SRP14 "Signal recognition particle 14 kDa protein"
species:9615 "Canis lupus familiaris" [GO:0005829 "cytosol"
evidence=TAS] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] Reactome:REACT_86357
InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170
GO:GO:0005829 GO:GO:0045900 GO:GO:0008312 GO:GO:0006614
GO:GO:0005786 Gene3D:3.30.720.10 SUPFAM:SSF54762
Reactome:REACT_146484 eggNOG:NOG237715 HOGENOM:HOG000184883
KO:K03104 GO:GO:0030942 PANTHER:PTHR12013 CTD:6727
HOVERGEN:HBG057435 OrthoDB:EOG415GG0 EMBL:U57440 EMBL:M29265
PIR:A34501 RefSeq:NP_001003251.1 UniGene:Cfa.3792
ProteinModelPortal:P16255 SMR:P16255 STRING:P16255 GeneID:403930
KEGG:cfa:403930 InParanoid:P16255 NextBio:20817421 Uniprot:P16255
Length = 110
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 39/94 (41%), Positives = 58/94 (61%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>UNIPROTKB|Q5ZIE3 [details] [associations]
symbol:SRP14 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0006614 "SRP-dependent
cotranslational protein targeting to membrane" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0042493
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 eggNOG:NOG237715
HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN GO:GO:0030942
PANTHER:PTHR12013 CTD:6727 GeneTree:ENSGT00390000008496
HOVERGEN:HBG057435 OrthoDB:EOG415GG0 EMBL:AADN02003199
EMBL:AJ720841 IPI:IPI00573985 RefSeq:NP_001006478.1
UniGene:Gga.5601 SMR:Q5ZIE3 STRING:Q5ZIE3
Ensembl:ENSGALT00000015631 GeneID:423284 KEGG:gga:423284
InParanoid:Q5ZIE3 NextBio:20825775 Uniprot:Q5ZIE3
Length = 110
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 38/94 (40%), Positives = 57/94 (60%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXX-XXXMATAGEPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T + EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVFITLKKYDGRTKPVPRKGHVESFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>ZFIN|ZDB-GENE-050913-131 [details] [associations]
symbol:srp14 "signal recognition particle 14"
species:7955 "Danio rerio" [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0030942 "endoplasmic
reticulum signal peptide binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0048500 "signal recognition particle"
evidence=IEA] InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290
ProDom:PD009170 ZFIN:ZDB-GENE-050913-131 GO:GO:0045900
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10
SUPFAM:SSF54762 HOGENOM:HOG000184883 KO:K03104 GO:GO:0030942
PANTHER:PTHR12013 CTD:6727 GeneTree:ENSGT00390000008496
HOVERGEN:HBG057435 EMBL:CABZ01086288 EMBL:CABZ01086289
EMBL:BC096882 IPI:IPI00613215 RefSeq:NP_001028913.1
UniGene:Dr.87571 SMR:Q4V9I5 Ensembl:ENSDART00000122683
GeneID:619260 KEGG:dre:619260 InParanoid:Q4V9I5 NextBio:20901477
Uniprot:Q4V9I5
Length = 110
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXX-XXXMATAGEPVEYRCLIRA 59
M LL+ D FL ELT +F++ R GSV +T EP + +CL+RA
Sbjct: 1 MVLLENDAFLTELTRLFQKCRSSGSVLITLKKYDGRTKPVPRKGHPETFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
+DGK+KIST V K+ +FQ +Y+ LL+AHM L
Sbjct: 61 SDGKRKISTVVSTKEVIKFQMAYSNLLRAHMDGL 94
>UNIPROTKB|F1PJ50 [details] [associations]
symbol:F1PJ50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0045900
GO:GO:0008312 GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10
SUPFAM:SSF54762 GO:GO:0030942 PANTHER:PTHR12013
GeneTree:ENSGT00390000008496 OMA:FMKSKMD EMBL:AAEX03011367
ProteinModelPortal:F1PJ50 Ensembl:ENSCAFT00000010910 Uniprot:F1PJ50
Length = 110
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/94 (40%), Positives = 57/94 (60%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GS+++T + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSMFITLKKYNGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNTFQMAYSNLLRANMDGL 94
>UNIPROTKB|H0YLA2 [details] [associations]
symbol:SRP14 "Signal recognition particle 14 kDa protein"
species:9606 "Homo sapiens" [GO:0005786 "signal recognition
particle, endoplasmic reticulum targeting" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0030942 "endoplasmic reticulum signal peptide binding"
evidence=IEA] InterPro:IPR003210 InterPro:IPR009018 Pfam:PF02290
ProDom:PD009170 GO:GO:0045900 EMBL:AC025168 GO:GO:0008312
GO:GO:0006614 GO:GO:0005786 Gene3D:3.30.720.10 SUPFAM:SSF54762
GO:GO:0030942 PANTHER:PTHR12013 HGNC:HGNC:11299 ChiTaRS:SRP14
ProteinModelPortal:H0YLA2 SMR:H0YLA2 Ensembl:ENST00000559081
Bgee:H0YLA2 Uniprot:H0YLA2
Length = 115
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQ 79
TDGK+KIST V +K+ +FQ
Sbjct: 61 TDGKKKISTVVSSKEVNKFQ 80
>UNIPROTKB|E2QS25 [details] [associations]
symbol:SRP14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030942 "endoplasmic reticulum signal peptide
binding" evidence=IEA] [GO:0008312 "7S RNA binding" evidence=IEA]
[GO:0006614 "SRP-dependent cotranslational protein targeting to
membrane" evidence=IEA] [GO:0005786 "signal recognition particle,
endoplasmic reticulum targeting" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 GO:GO:0042493
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 GO:GO:0030942 PANTHER:PTHR12013
GeneTree:ENSGT00390000008496 OMA:VDSDSNF EMBL:AAEX03002995
Ensembl:ENSCAFT00000026549 Uniprot:E2QS25
Length = 109
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 36/94 (38%), Positives = 55/94 (58%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATAG-EPVEYRCLIRA 59
M LL+ FL ELT +F++ + S+++T + G EP + +CL+RA
Sbjct: 1 MVLLERKQFLMELTRLFQKCQLSVSMFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGK-KISTVVSSKEVNKFQMAYSNLLRANMDGL 93
>DICTYBASE|DDB_G0273977 [details] [associations]
symbol:srp14-2 "signal recognition particle 14 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0048500
"signal recognition particle" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170
dictyBase:DDB_G0273977 dictyBase:DDB_G0272590
GenomeReviews:CM000151_GR EMBL:AAFI02000011 EMBL:AAFI02000009
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 eggNOG:NOG237715 KO:K03104
GO:GO:0030942 PANTHER:PTHR12013 RefSeq:XP_644347.1
RefSeq:XP_645067.1 ProteinModelPortal:Q556L1 STRING:Q556L1
PRIDE:Q556L1 EnsemblProtists:DDB0232380 EnsemblProtists:DDB0266782
GeneID:8618742 GeneID:8619234 KEGG:ddi:DDB_G0272590
KEGG:ddi:DDB_G0273977 OMA:VDSDSNF ProtClustDB:CLSZ2431064
Uniprot:Q556L1
Length = 123
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 3 LLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATA---GEPVEYRCLIRA 59
LL D FL+ L +++ KG+VWVT A E E +CL+RA
Sbjct: 2 LLDNDAFLSALNKLYQTTSKKGTVWVTMKKYVDSDSNFSRKKAERIKESEEEENKCLVRA 61
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLL 86
T+GK+KIST V AKD F+ +Y +L
Sbjct: 62 TNGKKKISTIVLAKDKSMFEKNYKNVL 88
>DICTYBASE|DDB_G0272590 [details] [associations]
symbol:srp14-1 "signal recognition particle 14 kDa
subunit" species:44689 "Dictyostelium discoideum" [GO:0048500
"signal recognition particle" evidence=IEA] [GO:0030942
"endoplasmic reticulum signal peptide binding" evidence=IEA]
[GO:0008312 "7S RNA binding" evidence=IEA] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=IEA] [GO:0005786 "signal recognition particle, endoplasmic
reticulum targeting" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170
dictyBase:DDB_G0273977 dictyBase:DDB_G0272590
GenomeReviews:CM000151_GR EMBL:AAFI02000011 EMBL:AAFI02000009
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 eggNOG:NOG237715 KO:K03104
GO:GO:0030942 PANTHER:PTHR12013 RefSeq:XP_644347.1
RefSeq:XP_645067.1 ProteinModelPortal:Q556L1 STRING:Q556L1
PRIDE:Q556L1 EnsemblProtists:DDB0232380 EnsemblProtists:DDB0266782
GeneID:8618742 GeneID:8619234 KEGG:ddi:DDB_G0272590
KEGG:ddi:DDB_G0273977 OMA:VDSDSNF ProtClustDB:CLSZ2431064
Uniprot:Q556L1
Length = 123
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 3 LLQPDPFLNELTSMFERNRDKGSVWVTFXXXXXXXXXXXXXMATA---GEPVEYRCLIRA 59
LL D FL+ L +++ KG+VWVT A E E +CL+RA
Sbjct: 2 LLDNDAFLSALNKLYQTTSKKGTVWVTMKKYVDSDSNFSRKKAERIKESEEEENKCLVRA 61
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLL 86
T+GK+KIST V AKD F+ +Y +L
Sbjct: 62 TNGKKKISTIVLAKDKSMFEKNYKNVL 88
>WB|WBGene00017799 [details] [associations]
symbol:F25G6.8 species:6239 "Caenorhabditis elegans"
[GO:0005786 "signal recognition particle, endoplasmic reticulum
targeting" evidence=IEA] [GO:0006614 "SRP-dependent cotranslational
protein targeting to membrane" evidence=IEA] [GO:0008312 "7S RNA
binding" evidence=IEA] [GO:0030942 "endoplasmic reticulum signal
peptide binding" evidence=IEA] InterPro:IPR003210
InterPro:IPR009018 Pfam:PF02290 ProDom:PD009170 EMBL:FO080489
GO:GO:0045900 GO:GO:0008312 GO:GO:0006614 GO:GO:0005786
Gene3D:3.30.720.10 SUPFAM:SSF54762 eggNOG:NOG237715
HOGENOM:HOG000184883 KO:K03104 OMA:SFEPADN GO:GO:0030942
PANTHER:PTHR12013 GeneTree:ENSGT00390000008496 PIR:G89134
RefSeq:NP_505208.1 ProteinModelPortal:O16927 SMR:O16927
DIP:DIP-26264N MINT:MINT-1040410 STRING:O16927 PaxDb:O16927
EnsemblMetazoa:F25G6.8.1 EnsemblMetazoa:F25G6.8.2 GeneID:179236
KEGG:cel:CELE_F25G6.8 UCSC:F25G6.8.2 CTD:179236 WormBase:F25G6.8
InParanoid:O16927 NextBio:904502 Uniprot:O16927
Length = 116
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 7 DPFLNELTSMFERNRDKG--SVWVTFXXXXXXXXXXXXXMATAGEPVEYRCLIRATDGKQ 64
D FL +LT+ + ++ +G SV+VT +T E E C+ RA G +
Sbjct: 11 DQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMPKG-STFKEGDEISCIFRAKWGSK 69
Query: 65 KISTTVGAKDHQRFQASYATLLKAHMAAL 93
KI+T V AK+ +F Y+ ++ A M L
Sbjct: 70 KIATEVKAKEVNKFHTQYSAIIVAQMVNL 98
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.130 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 122 90 0.00091 102 3 11 22 0.46 29
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 554 (59 KB)
Total size of DFA: 106 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.78u 0.14s 7.92t Elapsed: 00:00:00
Total cpu time: 7.79u 0.14s 7.93t Elapsed: 00:00:00
Start: Fri May 10 22:20:42 2013 End: Fri May 10 22:20:42 2013