BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033297
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04421|SRP14_ARATH Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana
GN=SRP14 PE=2 SV=2
Length = 121
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 103/120 (85%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
M LLQ DPFLNELTSMFE++++KGSVWVT KRSS+KSK QK K+++ GE +EYRCLIRAT
Sbjct: 1 MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60
Query: 61 DGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDKKKGVDGDRKDGAGSTKKPK 120
DGK+ +ST+VGAKDHQRFQASYAT+LKAHM ALKKRERKD+KK + ++K+ +TK K
Sbjct: 61 DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEKKESTSTTKSKK 120
>sp|O04433|SRP14_ORYSJ Signal recognition particle 14 kDa protein OS=Oryza sativa subsp.
japonica GN=SRP14 PE=2 SV=1
Length = 132
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 78/93 (83%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
M +LQPDPFL+ELTSM+ER+ +KGSVWVT KRSSMK +++ KMA GE VEYRCL+RAT
Sbjct: 1 MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60
Query: 61 DGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
DGK+ I T + AK++ +FQASYAT+LKAHM AL
Sbjct: 61 DGKKNICTALSAKEYLKFQASYATVLKAHMHAL 93
>sp|Q4R5C7|SRP14_MACFA Signal recognition particle 14 kDa protein OS=Macaca fascicularis
GN=SRP14 PE=2 SV=1
Length = 144
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKDK 101
TDGK+KIST V +K+ +FQ +Y+ LL+A+M LKKR++K+K
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNK 102
>sp|Q5RBX7|SRP14_PONAB Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14
PE=2 SV=1
Length = 136
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKD 100
TDGK+KIST V +K+ +FQ +Y+ LL+A+M LKKR++K+
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKN 101
>sp|P37108|SRP14_HUMAN Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14
PE=1 SV=2
Length = 136
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALKKRERKD 100
TDGK+KIST V +K+ +FQ +Y+ LL+A+M LKKR++K+
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKN 101
>sp|P16254|SRP14_MOUSE Signal recognition particle 14 kDa protein OS=Mus musculus
GN=Srp14 PE=1 SV=1
Length = 110
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K + G EP E +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKRKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>sp|A6QQL9|SRP14_BOVIN Signal recognition particle 14 kDa protein OS=Bos taurus GN=SRP14
PE=3 SV=1
Length = 110
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>sp|P16255|SRP14_CANFA Signal recognition particle 14 kDa protein OS=Canis familiaris
GN=SRP14 PE=1 SV=2
Length = 110
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAG-EPVEYRCLIRA 59
M LL+ + FL ELT +F++ R GSV++T K+ ++K K + G EP + +CL+RA
Sbjct: 1 MVLLESEQFLTELTRLFQKCRLSGSVFITLKKYDGRTKPIPRKGSVEGFEPSDNKCLLRA 60
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
TDGK+KIST V +K+ +FQ +Y+ LL+A+M L
Sbjct: 61 TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGL 94
>sp|Q556L1|SRP14_DICDI Signal recognition particle 14 kDa protein OS=Dictyostelium
discoideum GN=srp14-1 PE=3 SV=1
Length = 123
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 3 LLQPDPFLNELTSMFERNRDKGSVWVTFKR---SSMKSKSQKNKMATAGEPVEYRCLIRA 59
LL D FL+ L +++ KG+VWVT K+ S +K + E E +CL+RA
Sbjct: 2 LLDNDAFLSALNKLYQTTSKKGTVWVTMKKYVDSDSNFSRKKAERIKESEEEENKCLVRA 61
Query: 60 TDGKQKISTTVGAKDHQRFQASYATLLKAHMAALK 94
T+GK+KIST V AKD F+ +Y +L ++ LK
Sbjct: 62 TNGKKKISTIVLAKDKSMFEKNYKNVLLINLDNLK 96
>sp|O16927|SRP14_CAEEL Signal recognition particle 14 kDa protein OS=Caenorhabditis
elegans GN=F25G6.8 PE=3 SV=1
Length = 116
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 7 DPFLNELTSMFERNRDKG--SVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQ 64
D FL +LT+ + ++ +G SV+VT K ++K+ K +T E E C+ RA G +
Sbjct: 11 DQFLQKLTAFYRDSKIRGPKSVYVTMKPYDGRTKAMP-KGSTFKEGDEISCIFRAKWGSK 69
Query: 65 KISTTVGAKDHQRFQASYATLLKAHMAALK 94
KI+T V AK+ +F Y+ ++ A M L+
Sbjct: 70 KIATEVKAKEVNKFHTQYSAIIVAQMVNLE 99
>sp|O18881|SRP14_MACRA Signal recognition particle 14 kDa protein (Fragment) OS=Macaca
radiata GN=SRP14 PE=3 SV=1
Length = 74
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 67 STTVGAKDHQRFQASYATLLKAHMAALKKRERKD 100
ST V +K+ +FQ +Y+ LL+A+M LKKR++K+
Sbjct: 1 STVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKN 34
>sp|Q9P372|SRP14_SCHPO Signal recognition particle subunit srp14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=srp14 PE=1 SV=1
Length = 106
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 3 LLQPDPFLNELTSMFERNRDK--GSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRAT 60
LL + FL +LT + + ++ K GSV++ SQK GE LIRA
Sbjct: 2 LLSNEEFLKKLTDLLQTHQSKGTGSVYL----------SQKCNPVDEGEGSSASVLIRAK 51
Query: 61 DG-KQKISTTVGAKDHQRFQASYATLLKAHMAAL 93
G +KIST V F SYA + K + L
Sbjct: 52 SGAAEKISTVVELDYFTDFFQSYAEVCKGQIVGL 85
>sp|Q8IS44|DRD2L_DROME Dopamine D2-like receptor OS=Drosophila melanogaster GN=D2R PE=2
SV=1
Length = 506
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 73 KDHQRFQASYATLLKAHMAALKKRERKDKKK 103
KD + QAS T+ K H A+ KKRE+ KK
Sbjct: 394 KDKKNSQASRFTIYKVHKASKKKREKSSAKK 424
>sp|O75054|IGSF3_HUMAN Immunoglobulin superfamily member 3 OS=Homo sapiens GN=IGSF3 PE=2
SV=3
Length = 1194
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 19 RNRDKGSV---WVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATD 61
R R +G+V T K +++ +++K ++ T GEPVE+RC++ A +
Sbjct: 264 RKRSEGAVVNVQPTDKEFTVRLETEK-RLHTVGEPVEFRCILEAQN 308
>sp|Q6ZQA6|IGSF3_MOUSE Immunoglobulin superfamily member 3 OS=Mus musculus GN=Igsf3 PE=1
SV=2
Length = 1194
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 19 RNRDKGSV---WVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATD 61
R R +G+V T K +++ ++ K ++ T GEPVE+RC++ A +
Sbjct: 264 RKRSEGAVVNVQPTDKEFTVRLETDK-RLHTVGEPVEFRCILEAQN 308
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,766,793
Number of Sequences: 539616
Number of extensions: 1473727
Number of successful extensions: 3419
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3394
Number of HSP's gapped (non-prelim): 30
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)