Query 033297
Match_columns 122
No_of_seqs 102 out of 189
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e8o_B SRP14, signal recogniti 100.0 4.3E-49 1.5E-53 280.3 9.7 104 2-105 1-105 (106)
2 1914_A Signal recognition part 100.0 3.6E-45 1.2E-49 289.5 10.4 109 1-109 20-129 (232)
3 2w9j_A Signal recognition part 100.0 1.6E-44 5.6E-49 250.9 6.6 88 2-99 1-91 (91)
4 1914_A Signal recognition part 73.3 14 0.00047 28.9 7.4 72 1-92 147-221 (232)
5 2cay_A VPS36 PH domain, vacuol 36.3 49 0.0017 23.5 4.4 70 21-90 50-136 (145)
6 1zxk_A Cadherin-8; strand dime 32.8 26 0.00089 22.7 2.3 12 51-62 69-80 (98)
7 1zvn_A Mn-cadherin; strand dim 32.5 26 0.0009 22.7 2.3 12 51-62 70-81 (99)
8 1bm4_A Protein (moloney murine 32.0 18 0.00061 20.1 1.1 15 5-19 14-28 (32)
9 2ee0_A Protocadherin-9; Ca dom 30.7 46 0.0016 21.7 3.3 38 13-63 61-98 (114)
10 1y6z_A Heat shock protein, put 29.9 24 0.00083 27.6 2.0 21 71-91 143-163 (263)
11 2omz_B Epithelial-cadherin; le 28.8 37 0.0013 22.1 2.5 13 51-63 76-88 (105)
12 3fxt_A Nucleoside diphosphate- 27.7 32 0.0011 23.8 2.1 29 4-32 48-78 (113)
13 2yst_A Protocadherin-7; BH-PCD 27.3 52 0.0018 21.5 3.1 36 14-62 61-96 (119)
14 1usu_A Heat shock protein HSP8 26.6 26 0.0009 27.5 1.6 21 71-91 140-160 (260)
15 2izy_A CAMP-dependent protein 26.4 37 0.0013 20.3 2.0 23 71-93 25-47 (54)
16 3pry_A Heat shock protein HSP 25.4 28 0.00097 27.5 1.6 21 71-91 140-160 (268)
17 1hk7_A Heat shock protein HSP8 24.8 30 0.001 27.7 1.6 21 71-91 138-158 (288)
18 2gq0_A Chaperone protein HTPG; 24.5 25 0.00085 28.3 1.2 21 71-91 139-159 (303)
19 3k6i_A T-cadherin; cell adhesi 23.7 44 0.0015 21.4 2.1 13 51-63 71-83 (99)
20 3k6d_A T-cadherin; cell adhesi 23.4 54 0.0018 21.0 2.5 13 51-63 71-83 (99)
21 2k53_A A3DK08 protein; NESG, C 22.2 47 0.0016 20.9 2.0 16 4-19 50-65 (76)
22 3hjc_A Heat shock protein 83-1 22.1 35 0.0012 28.8 1.6 21 71-91 156-176 (444)
23 3k6f_A T-cadherin; cell adhesi 22.1 65 0.0022 20.6 2.7 13 51-63 72-84 (100)
24 2cge_A ATP-dependent molecular 22.0 35 0.0012 28.2 1.6 21 71-91 138-158 (405)
25 1m3w_A H10H24; four-helix bund 21.9 46 0.0016 18.0 1.6 13 6-18 10-22 (32)
26 2r18_A Capsid assembly protein 20.4 64 0.0022 23.3 2.5 19 6-24 102-120 (139)
No 1
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=100.00 E-value=4.3e-49 Score=280.25 Aligned_cols=104 Identities=44% Similarity=0.729 Sum_probs=74.3
Q ss_pred CCCCchHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccC-CCCCCCceeeEEEEeCCCceEEEEeccccHHHHHH
Q 033297 2 GLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQA 80 (122)
Q Consensus 2 vlL~ndeFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~-~~~~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F~~ 80 (122)
||||||+||++|++||+.++++||||||||||++.+.+.++... ...++.||+||||||||++||||||+++||++||+
T Consensus 1 vlL~nd~FL~~L~~Lf~~~k~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~~e~~cLiRAt~GkkKiSTvV~~~dl~~F~~ 80 (106)
T 1e8o_B 1 VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRATDGKKKISTVVSSKEVNKFQM 80 (106)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTTCCEEEEEEEEC-------------------CEEEEEEESSSSEEEEEEETTTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCCccccCCCCCCCCCcEEEEeeCCCCCEEEEECHHHHHHHHH
Confidence 79999999999999999999999999999999998776655432 22345689999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccccccccCC
Q 033297 81 SYATLLKAHMAALKKRERKDKKKGV 105 (122)
Q Consensus 81 ~Y~~vlK~~M~~LkKrdKkk~K~k~ 105 (122)
+|++|||+||+||+||||+++|+++
T Consensus 81 ~Y~~v~K~~M~gLKkrdkkkkkk~~ 105 (106)
T 1e8o_B 81 AYSNLLRANMDGLKKRDKKNKTKKT 105 (106)
T ss_dssp HHHHHHHHHCCCCC-----------
T ss_pred HHHHHHHhcccccCccccccccccC
Confidence 9999999999999999998887665
No 2
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=100.00 E-value=3.6e-45 Score=289.51 Aligned_cols=109 Identities=44% Similarity=0.717 Sum_probs=82.1
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccC-CCCCCCceeeEEEEeCCCceEEEEeccccHHHHH
Q 033297 1 MGLLQPDPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMA-TAGEPVEYRCLIRATDGKQKISTTVGAKDHQRFQ 79 (122)
Q Consensus 1 MvlL~ndeFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~-~~~~~~ey~~LiRAt~Gk~KiSTvV~~~~l~~F~ 79 (122)
||||+||+||++|++||+.++++||||||||||++.+.+.++... ...++.+|+||||||||++||||||+|+||++||
T Consensus 20 MVlLsNdeFL~eLtkLf~~~k~~GSV~lT~KR~~~~~~~~p~k~~~~~~~~~e~~cLIRAT~GkkKiSTvV~~~dl~~F~ 99 (232)
T 1914_A 20 MVLLESEQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKRKISTVVSSKEVNKFQ 99 (232)
T ss_dssp CCEECHHHHHHHHHHHHHHTSSSCCEEEEEEEEC------------CCCCCCCCEEEEEEESSSCEEEEEEETTSHHHHH
T ss_pred eEEeCHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCCcccCCCCCCCCCccEEEEEeCCCccEEEEECHHHHHHHH
Confidence 999999999999999999999999999999999988776655432 2335678999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccCCcCCC
Q 033297 80 ASYATLLKAHMAALKKRERKDKKKGVDGDR 109 (122)
Q Consensus 80 ~~Y~~vlK~~M~~LkKrdKkk~K~k~~~~~ 109 (122)
++|++|||+||+|||||||+++|+++++.+
T Consensus 100 ~~Ya~VlKa~M~gLKKrdKKkkKk~~~~~k 129 (232)
T 1914_A 100 MAYSNLLRANMDGLKKRDKKNKSKKSKPAQ 129 (232)
T ss_dssp HHHHHHHHHHSCCSBCC-----------CC
T ss_pred HHHHHHHHhcccccCccccchhhhhhhhhh
Confidence 999999999999999999988876655554
No 3
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-44 Score=250.89 Aligned_cols=88 Identities=36% Similarity=0.532 Sum_probs=67.6
Q ss_pred CCCCchHHHHHHHHHHhhcC--CCceEEEEEecCCCCCcccccccCCCCCCCceeeEEEEeCCCc-eEEEEeccccHHHH
Q 033297 2 GLLQPDPFLNELTSMFERNR--DKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQ-KISTTVGAKDHQRF 78 (122)
Q Consensus 2 vlL~ndeFL~~L~~Lf~~~~--~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~ey~~LiRAt~Gk~-KiSTvV~~~~l~~F 78 (122)
|+||||+||++|++||+.++ ++||||||||||++++. .+.+||||||||+|++ ||||+|+|+||++|
T Consensus 1 vlL~nd~FL~~L~~lf~~~~~~~~gSV~lT~KR~~~~~~----------~~~~~pcLiRAt~gkK~KiSTvV~~~~l~~F 70 (91)
T 2w9j_A 1 MLLSNEEFLKKLTDLLQTHQSKGTGSVYLSQKXNPVDEG----------EGSSASVLIRAKSGAAEKISTVVELDYFTDF 70 (91)
T ss_dssp CCBCHHHHHHHHHHHHHCC-------CCCEEEEEEECC---------------CEEEEEEECTTSCEEEEEEEGGGHHHH
T ss_pred CcCCHHHHHHHHHHHHHhcccCCCceEEEEEEecCCCcc----------CCCCCCEEEEEecCCCCEEEEEECHHHHHHH
Confidence 79999999999999999976 89999999999987764 1237889999999997 99999999999999
Q ss_pred HHHHHHHHHhhcccccccccc
Q 033297 79 QASYATLLKAHMAALKKRERK 99 (122)
Q Consensus 79 ~~~Y~~vlK~~M~~LkKrdKk 99 (122)
|++|++|||+||+||+||||+
T Consensus 71 ~~~Y~~v~K~~M~~LKkrdkk 91 (91)
T 2w9j_A 71 FQSYAEVXKGQIVGLKKRDRK 91 (91)
T ss_dssp HHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhCCcccccCCCC
Confidence 999999999999999999985
No 4
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=73.34 E-value=14 Score=28.89 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=42.6
Q ss_pred CCCCCc-hHHHHHHHHHHhhcCCCceEEEEEecCCCCCcccccccCCCCCCCceeeEEEEeCCCc--eEEEEeccccHHH
Q 033297 1 MGLLQP-DPFLNELTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGKQ--KISTTVGAKDHQR 77 (122)
Q Consensus 1 MvlL~n-deFL~~L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~ey~~LiRAt~Gk~--KiSTvV~~~~l~~ 77 (122)
||.+.+ +||+.+-..||..+.. ..++|+| |.... .-+.+-+||... |+-|--. .||.+
T Consensus 147 M~y~~sw~eF~~~s~~Ly~a~P~--~tRy~~K-Y~~~~---------------g~LvLKvTD~~~cLkYrT~ka-~dl~r 207 (232)
T 1914_A 147 MPQFQTWEEFSRAAEKLYLADPM--KVRVVLK-YRHVD---------------GNLCIKVTDDLVCLVYRTDQA-QDVKK 207 (232)
T ss_dssp ---CCSHHHHHHHHHHHHHHCTT--TCEEEEE-EETTT---------------TEEEEEEECSSSEEEEEECBG-GGHHH
T ss_pred eeeeCCHHHHHHHHHHHHHhCCC--ceEEEEE-EEcCC---------------ceEEEEEeeCCeEEEEECchH-HHHHH
Confidence 788886 9999999999998764 5788888 22221 237777887753 6666543 44555
Q ss_pred HHHHHHHHHHhhccc
Q 033297 78 FQASYATLLKAHMAA 92 (122)
Q Consensus 78 F~~~Y~~vlK~~M~~ 92 (122)
|-+ +...|-..|.+
T Consensus 208 le~-l~~~lm~~Ma~ 221 (232)
T 1914_A 208 IEK-FHSQLMRLMVA 221 (232)
T ss_dssp HHH-HHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHhC
Confidence 442 23333334444
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=36.33 E-value=49 Score=23.49 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=42.7
Q ss_pred CCCceEEEEEecCCCCCccccc------c---c-----CCCCCCCceeeEEEEe---CCCceEEEEeccccHHHHHHHHH
Q 033297 21 RDKGSVWVTFKRSSMKSKSQKN------K---M-----ATAGEPVEYRCLIRAT---DGKQKISTTVGAKDHQRFQASYA 83 (122)
Q Consensus 21 ~~~gSV~lT~KR~~~~~~~~~~------~---~-----~~~~~~~ey~~LiRAt---~Gk~KiSTvV~~~~l~~F~~~Y~ 83 (122)
...|.||||--|+.+-+...+. + + ..+.=.....+.|++. .|...+.-+....--+.|.+.|.
T Consensus 50 ~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~fg~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~ 129 (145)
T 2cay_A 50 RQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGFLTRSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATE 129 (145)
T ss_dssp CSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSSSSSSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHH
T ss_pred CCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCccccCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHH
Confidence 3689999999998764322111 0 0 0000011245666774 45556666666666799999999
Q ss_pred HHHHhhc
Q 033297 84 TLLKAHM 90 (122)
Q Consensus 84 ~vlK~~M 90 (122)
+++....
T Consensus 130 ~al~~~~ 136 (145)
T 2cay_A 130 RALENIL 136 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 6
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=32.75 E-value=26 Score=22.67 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=10.1
Q ss_pred CceeeEEEEeCC
Q 033297 51 VEYRCLIRATDG 62 (122)
Q Consensus 51 ~ey~~LiRAt~G 62 (122)
..|-+.|+|+++
T Consensus 69 ~~y~l~v~A~D~ 80 (98)
T 1zxk_A 69 AEYTLTAQAVDF 80 (98)
T ss_dssp SEEEEEEEEEET
T ss_pred CeEEEEEEEEEC
Confidence 379999999985
No 7
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=32.46 E-value=26 Score=22.73 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=9.9
Q ss_pred CceeeEEEEeCC
Q 033297 51 VEYRCLIRATDG 62 (122)
Q Consensus 51 ~ey~~LiRAt~G 62 (122)
..|-+.|.|+++
T Consensus 70 ~~y~l~V~A~D~ 81 (99)
T 1zvn_A 70 SQYTLRAQALDR 81 (99)
T ss_dssp SEEEEEEEEEET
T ss_pred CeEEEEEEEEEC
Confidence 378999999975
No 8
>1bm4_A Protein (moloney murine leukemia virus capsid); moloney murine leukemia virus capsid protein, momlv, MU-MLV, MHR, major homology region; NMR {Synthetic} SCOP: j.47.1.1
Probab=31.97 E-value=18 Score=20.09 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHhh
Q 033297 5 QPDPFLNELTSMFER 19 (122)
Q Consensus 5 ~ndeFL~~L~~Lf~~ 19 (122)
++.+||..|-+.|..
T Consensus 14 sPs~FlerL~eayR~ 28 (32)
T 1bm4_A 14 SPSAFLERLKEAYRR 28 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 367899999998864
No 9
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.75 E-value=46 Score=21.72 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCceEEEEEecCCCCCcccccccCCCCCCCceeeEEEEeCCC
Q 033297 13 LTSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDGK 63 (122)
Q Consensus 13 L~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~ey~~LiRAt~Gk 63 (122)
-..+|.-....|.|++. +.|++.. ...|-+.|+|+++-
T Consensus 61 ~~~~F~Id~~tG~I~~~-~~LD~E~------------~~~y~l~V~A~D~g 98 (114)
T 2ee0_A 61 TKRLFALNNTTGLITVQ-RSLDREE------------TAIHKVTVLASDGS 98 (114)
T ss_dssp HHHHEEECTTTCEEEEC-SCCCTTT------------CSEEEEEEEEESSS
T ss_pred ccceEEEeCCeeEEEEC-ccCCccc------------CcEEEEEEEEEECC
Confidence 35677777677877654 3333322 24799999999864
No 10
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=29.92 E-value=24 Score=27.65 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.1
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
+++...+||..|+.++|.|+-
T Consensus 143 d~e~y~kf~~~fg~~lK~G~~ 163 (263)
T 1y6z_A 143 GGDKWTKFLNTFGKYLKIGVV 163 (263)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHccccc
Confidence 478999999999999999985
No 11
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=28.82 E-value=37 Score=22.11 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.6
Q ss_pred CceeeEEEEeCCC
Q 033297 51 VEYRCLIRATDGK 63 (122)
Q Consensus 51 ~ey~~LiRAt~Gk 63 (122)
..|-+.|+|+++-
T Consensus 76 ~~y~l~V~A~D~g 88 (105)
T 2omz_B 76 ATYTLFSHAVSSN 88 (105)
T ss_dssp CEEEEEEEEECTT
T ss_pred CeEEEEEEEEECC
Confidence 3799999999863
No 12
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=27.70 E-value=32 Score=23.84 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCchHHHHHHHHHHhhcCC--CceEEEEEec
Q 033297 4 LQPDPFLNELTSMFERNRD--KGSVWVTFKR 32 (122)
Q Consensus 4 L~ndeFL~~L~~Lf~~~~~--~gSV~lT~KR 32 (122)
.++++|-..|....+.-+. ...|||.+--
T Consensus 48 ~d~~~F~~~L~~SL~~Wr~~gk~~IWlklpi 78 (113)
T 3fxt_A 48 LDAAAFQKGLQAAVQQWRSEGRTAVWLHIPI 78 (113)
T ss_dssp BCHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeeEEEEcCH
Confidence 4679999999998887654 3489998754
No 13
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.30 E-value=52 Score=21.48 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=23.2
Q ss_pred HHHHhhcCCCceEEEEEecCCCCCcccccccCCCCCCCceeeEEEEeCC
Q 033297 14 TSMFERNRDKGSVWVTFKRSSMKSKSQKNKMATAGEPVEYRCLIRATDG 62 (122)
Q Consensus 14 ~~Lf~~~~~~gSV~lT~KR~~~~~~~~~~~~~~~~~~~ey~~LiRAt~G 62 (122)
..+|.-....|.|+++ +.|++.. ...|-+.|+|+++
T Consensus 61 ~~~F~Id~~tG~I~~~-~~LD~E~------------~~~y~l~V~A~D~ 96 (119)
T 2yst_A 61 RRLLRLDETSGWLSVL-HRIDREE------------VNQLRFTVMARDR 96 (119)
T ss_dssp HHHEEECTTTCEEEEC-SCCCTTT------------CSEEEEEEEECCS
T ss_pred ccEEEEeCCceEEEEC-ccCCccc------------CCEEEEEEEEEEC
Confidence 4567766667777654 3343322 2379999999986
No 14
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=26.59 E-value=26 Score=27.51 Aligned_cols=21 Identities=10% Similarity=0.360 Sum_probs=19.2
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||.+|+.++|.|+-
T Consensus 140 d~e~y~~f~~~fg~~lK~G~~ 160 (260)
T 1usu_A 140 DSEQFEKFYSAFSKNIKLGVH 160 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcchhc
Confidence 678899999999999999985
No 15
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=26.40 E-value=37 Score=20.30 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=18.6
Q ss_pred ccccHHHHHHHHHHHHHhhcccc
Q 033297 71 GAKDHQRFQASYATLLKAHMAAL 93 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~~L 93 (122)
.|+|+-.|.++|.+-+....+.|
T Consensus 25 qP~Di~~Faa~YF~~L~~~~~~~ 47 (54)
T 2izy_A 25 QPPDLVDFAVEYFTRLREARRGL 47 (54)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhHHHH
Confidence 58899999999999887655444
No 16
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=25.42 E-value=28 Score=27.46 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=18.5
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||.+|+.++|.|+-
T Consensus 140 d~e~Y~~f~~~fg~~lK~G~~ 160 (268)
T 3pry_A 140 DKENYKKFYEAFSKNLKLGIH 160 (268)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhh
Confidence 567889999999999999974
No 17
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=24.81 E-value=30 Score=27.67 Aligned_cols=21 Identities=10% Similarity=0.360 Sum_probs=19.3
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||.+|+.++|.|+-
T Consensus 138 d~e~Y~kf~~~fg~~lK~Gi~ 158 (288)
T 1hk7_A 138 DSEQFEKFYSAFSKNIKLGVH 158 (288)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHHHhhhhc
Confidence 678999999999999999975
No 18
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=24.53 E-value=25 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||.+|+.++|.|+-
T Consensus 139 d~e~Y~kF~~~fg~~lK~Gi~ 159 (303)
T 2gq0_A 139 DAEKYQTFWQQFGLVLKEGPA 159 (303)
T ss_dssp CHHHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhh
Confidence 467899999999999999985
No 19
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=23.71 E-value=44 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=10.5
Q ss_pred CceeeEEEEeCCC
Q 033297 51 VEYRCLIRATDGK 63 (122)
Q Consensus 51 ~ey~~LiRAt~Gk 63 (122)
..|-+.|+|+++-
T Consensus 71 ~~y~l~v~A~D~g 83 (99)
T 3k6i_A 71 ANYELEVEVTDLS 83 (99)
T ss_dssp CEEEEEEEEEETT
T ss_pred CEEEEEEEEEECC
Confidence 3789999999863
No 20
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=23.38 E-value=54 Score=20.98 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=10.7
Q ss_pred CceeeEEEEeCCC
Q 033297 51 VEYRCLIRATDGK 63 (122)
Q Consensus 51 ~ey~~LiRAt~Gk 63 (122)
..|-+.|.|++|-
T Consensus 71 ~~y~l~V~A~D~g 83 (99)
T 3k6d_A 71 PSYQLQVETTDEN 83 (99)
T ss_dssp CEEEEEEEEECTT
T ss_pred ceEEEEEEEEECC
Confidence 3789999999864
No 21
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=22.16 E-value=47 Score=20.92 Aligned_cols=16 Identities=31% Similarity=0.710 Sum_probs=14.1
Q ss_pred CCchHHHHHHHHHHhh
Q 033297 4 LQPDPFLNELTSMFER 19 (122)
Q Consensus 4 L~ndeFL~~L~~Lf~~ 19 (122)
||.|+|+.+|.++++.
T Consensus 50 iD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 50 IDADKLVKELNEYFEK 65 (76)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6889999999999865
No 22
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=22.11 E-value=35 Score=28.77 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=19.1
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||.+|+.++|.|+-
T Consensus 156 d~e~Y~kFw~~fg~~lK~G~~ 176 (444)
T 3hjc_A 156 NKEDYKQFYEQFGKNIKLGIH 176 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhHHHhcccc
Confidence 678899999999999999985
No 23
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=22.11 E-value=65 Score=20.61 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.5
Q ss_pred CceeeEEEEeCCC
Q 033297 51 VEYRCLIRATDGK 63 (122)
Q Consensus 51 ~ey~~LiRAt~Gk 63 (122)
..|-+.|.|+++-
T Consensus 72 ~~y~l~V~A~D~g 84 (100)
T 3k6f_A 72 ATYQLYVETTDAS 84 (100)
T ss_dssp SEEEEEEEEECTT
T ss_pred CEEEEEEEEEECC
Confidence 3789999999863
No 24
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=21.98 E-value=35 Score=28.20 Aligned_cols=21 Identities=10% Similarity=0.360 Sum_probs=19.1
Q ss_pred ccccHHHHHHHHHHHHHhhcc
Q 033297 71 GAKDHQRFQASYATLLKAHMA 91 (122)
Q Consensus 71 ~~~~l~~F~~~Y~~vlK~~M~ 91 (122)
++++..+||..|+.++|.|+-
T Consensus 138 ~~e~y~kf~~~fg~~lK~G~~ 158 (405)
T 2cge_A 138 DSEQFEKFYSAFSKNIKLGVH 158 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhhcchhc
Confidence 578899999999999999985
No 25
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=21.91 E-value=46 Score=18.01 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHh
Q 033297 6 PDPFLNELTSMFE 18 (122)
Q Consensus 6 ndeFL~~L~~Lf~ 18 (122)
+++||.+..+|..
T Consensus 10 heeflkkfeellk 22 (32)
T 1m3w_A 10 HEEFLKKFEELLK 22 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899988887764
No 26
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=20.35 E-value=64 Score=23.26 Aligned_cols=19 Identities=32% Similarity=0.852 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHhhcCCCc
Q 033297 6 PDPFLNELTSMFERNRDKG 24 (122)
Q Consensus 6 ndeFL~~L~~Lf~~~~~~g 24 (122)
|++|..+|+.+|..+...|
T Consensus 102 peef~dava~v~~eN~GRG 120 (139)
T 2r18_A 102 PQAFIDEVAKVYEINHGRG 120 (139)
T ss_dssp CHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 7999999999999876554
Done!