BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033298
MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP
KGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMP
VR

High Scoring Gene Products

Symbol, full name Information P value
AT4G13500 protein from Arabidopsis thaliana 4.4e-36
AT2G05310 protein from Arabidopsis thaliana 9.2e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033298
        (122 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2140867 - symbol:AT4G13500 "AT4G13500" species...   389  4.4e-36   1
TAIR|locus:2051264 - symbol:AT2G05310 "AT2G05310" species...   386  9.2e-36   1


>TAIR|locus:2140867 [details] [associations]
            symbol:AT4G13500 "AT4G13500" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            EMBL:CP002687 GO:GO:0009534 EMBL:AL049656 EMBL:AL161536
            UniGene:At.33367 ProtClustDB:CLSN2685939 EMBL:BT026090
            IPI:IPI00545697 PIR:T06652 RefSeq:NP_193086.1 IntAct:Q9T0H1
            STRING:Q9T0H1 PRIDE:Q9T0H1 EnsemblPlants:AT4G13500.1 GeneID:826982
            KEGG:ath:AT4G13500 TAIR:At4g13500 InParanoid:Q9T0H1 OMA:KKRVHHF
            PhylomeDB:Q9T0H1 Genevestigator:Q9T0H1 Uniprot:Q9T0H1
        Length = 125

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 76/125 (60%), Positives = 95/125 (76%)

Query:     1 MAARVALYSS-LSGKAS--TWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGE 57
             MAA+  + SS  S +AS  +  SS S++          PP P    +FK++A LGG DGE
Sbjct:     1 MAAKFRISSSSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPLGFPEFKLHAKLGGGDGE 60

Query:    58 VKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWI 117
             VKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWI
Sbjct:    61 VKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWI 120

Query:   118 KMPVR 122
             K+P+R
Sbjct:   121 KVPIR 125


>TAIR|locus:2051264 [details] [associations]
            symbol:AT2G05310 "AT2G05310" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 EMBL:AC007018 IPI:IPI00520290
            PIR:A84467 RefSeq:NP_565324.1 UniGene:At.41202 STRING:Q9SJ31
            PRIDE:Q9SJ31 EnsemblPlants:AT2G05310.1 GeneID:815079
            KEGG:ath:AT2G05310 TAIR:At2g05310 HOGENOM:HOG000006200
            InParanoid:Q9SJ31 PhylomeDB:Q9SJ31 ProtClustDB:CLSN2685939
            ArrayExpress:Q9SJ31 Genevestigator:Q9SJ31 Uniprot:Q9SJ31
        Length = 125

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/125 (60%), Positives = 94/125 (75%)

Query:     1 MAARVAL-YSSLSGKA--STWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGE 57
             MAA++ +  SS S +   S   SS S++          PP P    QFK++A LGG DGE
Sbjct:     1 MAAKLCIPSSSFSHRTNDSITSSSSSYSSLLALPQFFCPPSPLGFPQFKLHAKLGGGDGE 60

Query:    58 VKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWI 117
             VKPK K+KF+T++EEP+++WQ+ GEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWI
Sbjct:    61 VKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWI 120

Query:   118 KMPVR 122
             K+P+R
Sbjct:   121 KVPIR 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.40    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.66u 0.20s 13.86t   Elapsed:  00:00:00
  Total cpu time:  13.66u 0.20s 13.86t   Elapsed:  00:00:00
  Start:  Fri May 10 22:21:18 2013   End:  Fri May 10 22:21:18 2013

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