BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033298
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 32 SLSSPPKPRAHGQF---KVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENP 88
S+S+P P A + + G D E P K + + E+P+E W +A ++G
Sbjct: 112 SVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVG 171
Query: 89 MKTPIPYIIIFGMSTP 104
M P+PY+ S+P
Sbjct: 172 M-IPVPYVEKLVRSSP 186
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 32 SLSSPPKPRAHGQF---KVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENP 88
S+S+P P A + + G D E P K + + E+P+E W +A ++G
Sbjct: 112 SVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVG 171
Query: 89 MKTPIPYIIIFGMSTP 104
M P+PY+ S+P
Sbjct: 172 M-IPVPYVEKLVRSSP 186
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 43 GQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFG 100
G + + G D E P K + ++P+E W A + EG+ M P+PY+ +G
Sbjct: 2 GYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYVEKYG 58
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 142 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 187
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 144 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 189
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N-
Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFG 100
+ G D E P K + ++P+E W A + EG+ M P+PY+ +G
Sbjct: 8 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYVEKYG 57
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene
Protein C-Crk
Length = 58
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFG 100
+ G D E P K + ++P+E W A + EG+ M P+PY+ +G
Sbjct: 9 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYVEKYG 58
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 142 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 187
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFG 100
+ G D E P K + ++P+E W A + EG+ M P+PY+ +G
Sbjct: 11 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYVEKYG 60
>pdb|3EHB|A Chain A, A D-Pathway Mutation Decouples The Paracoccus
Denitrificans Cytochrome C Oxidase By Altering The Side
Chain Orientation Of A Distant, Conserved Glutamate
Length = 558
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 VALYSSLSGKASTWPSSWSHNPFTQQYSLSSPP 37
+ Y+ +GK P+ W+ + T +++L SPP
Sbjct: 506 IVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPP 538
>pdb|1AR1|A Chain A, Structure At 2.7 Angstrom Resolution Of The Paracoccus
Denitrificans Two-Subunit Cytochrome C Oxidase Complexed
With An Antibody Fv Fragment
pdb|3HB3|A Chain A, High Resolution Crystal Structure Of Paracoccus
Denitrificans Cytochrome C Oxidase
Length = 558
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 VALYSSLSGKASTWPSSWSHNPFTQQYSLSSPP 37
+ Y+ +GK P+ W+ + T +++L SPP
Sbjct: 506 IVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPP 538
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + +G+ M P+PY+
Sbjct: 9 DFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGM-IPVPYV 54
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 22 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 67
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 11 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 56
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 50 NLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYI 96
+ G D E P K + ++P+E W A + EG+ M P+PY+
Sbjct: 9 DFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM-IPVPYV 54
>pdb|1QLE|A Chain A, Cryo-structure Of The Paracoccus Denitrificans
Four-subunit Cytochrome C Oxidase In The Completely
Oxidized State Complexed With An Antibody Fv Fragment
Length = 538
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 5 VALYSSLSGKASTWPSSWSHNPFTQQYSLSSPP 37
+ Y+ +GK P+ W+ + T +++L SPP
Sbjct: 490 IVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPP 522
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 41 AHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREG 85
AHG VY +G +GEV P + + R FW T REG
Sbjct: 209 AHGGRLVY--IGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREG 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,078,016
Number of Sequences: 62578
Number of extensions: 168940
Number of successful extensions: 530
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 20
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)