Query 033298
Match_columns 122
No_of_seqs 23 out of 25
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 20:20:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxx_A Geminin; coiled-coil, c 38.5 10 0.00035 25.9 1.0 17 67-83 8-24 (79)
2 3eir_A Putative ATP/GTP bindin 32.4 9.4 0.00032 31.4 0.0 15 79-93 10-24 (281)
3 1gqp_A DOC1/APC10; cell cycle, 26.1 8.8 0.0003 30.1 -1.2 15 68-82 75-89 (221)
4 1jhj_A APC10; beta sandwich, j 25.7 7.8 0.00027 28.9 -1.5 18 64-82 41-58 (171)
5 1wlq_A Geminin; coiled-coil; 2 23.1 27 0.00092 24.2 1.0 17 67-83 12-28 (83)
6 1uii_A Geminin; human, DNA rep 16.7 41 0.0014 23.2 0.8 16 68-83 21-36 (83)
7 2xz8_A Peptidoglycan-recogniti 14.3 63 0.0022 23.3 1.3 30 65-99 8-37 (150)
8 1kcq_A Gelsolin, brevin, ADF, 14.0 1.1E+02 0.0038 19.7 2.3 18 66-83 76-93 (104)
9 3arc_T Photosystem II reaction 12.8 48 0.0016 19.5 0.2 20 93-112 4-23 (32)
10 2f2l_A Peptidoglycan-recogniti 11.9 82 0.0028 22.5 1.3 29 66-99 2-30 (167)
No 1
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.50 E-value=10 Score=25.90 Aligned_cols=17 Identities=18% Similarity=0.790 Sum_probs=12.9
Q ss_pred cccccCchHHHhhhhhh
Q 033298 67 VTREEEPDEFWQTAGER 83 (122)
Q Consensus 67 ItRE~EpEqyW~s~gER 83 (122)
.+.|+-++|||+.-+|+
T Consensus 8 ~~~e~Pse~YWk~lAE~ 24 (79)
T 2zxx_A 8 ISKENPSSQYWKEVAEQ 24 (79)
T ss_dssp --CCCTTCTHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHH
Confidence 46678899999988876
No 2
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=32.41 E-value=9.4 Score=31.41 Aligned_cols=15 Identities=60% Similarity=0.966 Sum_probs=0.0
Q ss_pred hhhhhcCCCCCCCcc
Q 033298 79 TAGEREGENPMKTPI 93 (122)
Q Consensus 79 s~gEReG~NPmktPL 93 (122)
|...|.|+|||-||+
T Consensus 10 ~~~~~~~~~~~~~~~ 24 (281)
T 3eir_A 10 SNTNRTGENPMITPI 24 (281)
T ss_dssp ---------------
T ss_pred cccCcCCCCCcccce
Confidence 345789999999985
No 3
>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9
Probab=26.14 E-value=8.8 Score=30.12 Aligned_cols=15 Identities=33% Similarity=0.824 Sum_probs=11.6
Q ss_pred ccccCchHHHhhhhh
Q 033298 68 TREEEPDEFWQTAGE 82 (122)
Q Consensus 68 tRE~EpEqyW~s~gE 82 (122)
.|++.++.||||.|.
T Consensus 75 L~D~s~~TyWQSDG~ 89 (221)
T 1gqp_A 75 ALDDNYDTFWQSDGG 89 (221)
T ss_dssp GSSSCTTCCEECCSS
T ss_pred hcCCCccceeccCCC
Confidence 467788999999554
No 4
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9
Probab=25.65 E-value=7.8 Score=28.89 Aligned_cols=18 Identities=22% Similarity=0.723 Sum_probs=13.0
Q ss_pred ccccccccCchHHHhhhhh
Q 033298 64 RKFVTREEEPDEFWQTAGE 82 (122)
Q Consensus 64 kkfItRE~EpEqyW~s~gE 82 (122)
.+.+ ++..+|.||||.|.
T Consensus 41 v~~L-~D~~~~TyWqSdg~ 58 (171)
T 1jhj_A 41 VDQL-RDDNLETYWQSDGS 58 (171)
T ss_dssp THHH-HSSCTTCCEECCSS
T ss_pred hHHc-CCCCCCeeEccCCC
Confidence 3345 56778889999874
No 5
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.14 E-value=27 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.790 Sum_probs=12.7
Q ss_pred cccccCchHHHhhhhhh
Q 033298 67 VTREEEPDEFWQTAGER 83 (122)
Q Consensus 67 ItRE~EpEqyW~s~gER 83 (122)
.+.|+-++|||+.-+|+
T Consensus 12 ~~~e~pse~YWk~lAE~ 28 (83)
T 1wlq_A 12 ISKENPSSQYWKEVAEQ 28 (83)
T ss_dssp --CCCTTCTHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHH
Confidence 35688899999987775
No 6
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=16.70 E-value=41 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.756 Sum_probs=11.5
Q ss_pred ccccCchHHHhhhhhh
Q 033298 68 TREEEPDEFWQTAGER 83 (122)
Q Consensus 68 tRE~EpEqyW~s~gER 83 (122)
+.+.-+++||+.-+|+
T Consensus 21 ~~e~Pse~YWk~lAE~ 36 (83)
T 1uii_A 21 IKENPSSQYWKEVAEK 36 (83)
T ss_dssp --CCHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHH
Confidence 4667789999987775
No 7
>2xz8_A Peptidoglycan-recognition protein LF; immune system, innate immunity, PGRP-LF; HET: PG4; 1.94A {Drosophila melanogaster}
Probab=14.28 E-value=63 Score=23.28 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=20.7
Q ss_pred cccccccCchHHHhhhhhhcCCCCCCCccceeeee
Q 033298 65 KFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIF 99 (122)
Q Consensus 65 kfItRE~EpEqyW~s~gEReG~NPmktPLp~I~i~ 99 (122)
.+|+|.+ |-...-+.-..||..|+.||+|-
T Consensus 8 ~iv~R~~-----WgA~~~~~~~~~~~~pv~~vvIH 37 (150)
T 2xz8_A 8 KIVTRPY-----WLAQPPIVPLTPLKLPIESVRFV 37 (150)
T ss_dssp CEECGGG-----GTCCCCSSCCCBCCSSEEEEEEE
T ss_pred eEEEecc-----cCCCCCCCCCccccCCcCEEEEE
Confidence 4777765 85443333345799999999985
No 8
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=14.05 E-value=1.1e+02 Score=19.69 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=13.5
Q ss_pred ccccccCchHHHhhhhhh
Q 033298 66 FVTREEEPDEFWQTAGER 83 (122)
Q Consensus 66 fItRE~EpEqyW~s~gER 83 (122)
.|...+||++||.-=|.+
T Consensus 76 ~v~eG~E~~~Fw~~LGg~ 93 (104)
T 1kcq_A 76 VSEEGTEPEAMLQVLGPK 93 (104)
T ss_dssp EEETTCCCHHHHHHHCSC
T ss_pred EEeCCCCCHHHHHHcCCC
Confidence 455667999999977644
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=12.83 E-value=48 Score=19.48 Aligned_cols=20 Identities=35% Similarity=0.678 Sum_probs=13.8
Q ss_pred cceeeeehhhhHHHHHHHHh
Q 033298 93 IPYIIIFGMSTPFVILAIAF 112 (122)
Q Consensus 93 Lp~I~i~gi~~PFviLAiA~ 112 (122)
+.|+.++....=.++.||+|
T Consensus 4 ~vYt~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 4 ITYVFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 45666666666667888876
No 10
>2f2l_A Peptidoglycan-recognition protein-LC isoform LCA; protein-peptidoglycan complex, membrane protein, immune SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila melanogaster} SCOP: d.118.1.1 PDB: 1z6i_A*
Probab=11.94 E-value=82 Score=22.45 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=18.6
Q ss_pred ccccccCchHHHhhhhhhcCCCCCCCccceeeee
Q 033298 66 FVTREEEPDEFWQTAGEREGENPMKTPIPYIIIF 99 (122)
Q Consensus 66 fItRE~EpEqyW~s~gEReG~NPmktPLp~I~i~ 99 (122)
+|+|.+ |-...-+.-..||..|+.||+|=
T Consensus 2 iv~R~~-----WgA~~~~~~~~~~~~pv~~vvIH 30 (167)
T 2f2l_A 2 FVERQQ-----WLAQPPQKEIPDLELPVGLVIAL 30 (167)
T ss_dssp EECGGG-----GTCCCCSSCCCBCCSSEEEEEEE
T ss_pred eeehhh-----hCCCCCCCcccccCCCCCEEEEE
Confidence 455553 75443333346799999999985
Done!