Query 033298
Match_columns 122
No_of_seqs 23 out of 25
Neff 2.1
Searched_HMMs 13730
Date Mon Mar 25 20:20:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033298.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033298hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f2la1 d.118.1.1 (A:355-520) 35.2 6.3 0.00046 26.2 1.2 29 66-99 1-29 (166)
2 d1kf6d_ f.21.2.2 (D:) Fumarate 29.2 1.8 0.00013 30.1 -2.5 9 69-78 8-16 (119)
3 d1oysa2 d.101.1.1 (A:152-237) 21.7 16 0.0012 21.9 1.2 12 87-98 2-13 (86)
4 d1udsa2 d.101.1.1 (A:151-255) 20.9 18 0.0013 22.7 1.4 13 86-98 2-14 (105)
5 d2hafa1 d.310.1.1 (A:15-192) H 20.4 25 0.0018 23.3 2.1 18 71-88 161-178 (178)
6 d1q90d_ f.32.1.1 (D:) Subunit 20.0 20 0.0014 24.7 1.5 35 84-118 61-112 (156)
7 d1uz5a1 b.85.6.1 (A:329-402) M 19.3 21 0.0015 20.9 1.3 16 106-121 40-55 (74)
8 d2pmra1 a.8.11.1 (A:3-77) Unch 18.1 10 0.00076 24.0 -0.3 13 106-118 54-66 (75)
9 d1x4ka1 g.39.1.3 (A:35-66) Fou 17.8 15 0.0011 20.3 0.3 13 60-72 8-20 (32)
10 d1lucb_ c.1.16.1 (B:) Bacteria 16.9 29 0.0021 24.0 1.8 32 87-118 161-192 (320)
No 1
>d2f2la1 d.118.1.1 (A:355-520) Peptidoglycan-recognition protein-LC {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.22 E-value=6.3 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=19.5
Q ss_pred ccccccCchHHHhhhhhhcCCCCCCCccceeeee
Q 033298 66 FVTREEEPDEFWQTAGEREGENPMKTPIPYIIIF 99 (122)
Q Consensus 66 fItRE~EpEqyW~s~gEReG~NPmktPLp~I~i~ 99 (122)
||+|++ |....-+.--.+|..|..+|+|-
T Consensus 1 ~V~R~~-----WgA~~p~~~~~~~~~pv~~vviH 29 (166)
T d2f2la1 1 FVERQQ-----WLAQPPQKEIPDLELPVGLVIAL 29 (166)
T ss_dssp EECGGG-----GTCCCCSSCCCBCCSSEEEEEEE
T ss_pred CcChHH-----HCcCCCCCCCCccCCCCCEEEEE
Confidence 788865 85433333335688899999885
No 2
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=29.21 E-value=1.8 Score=30.11 Aligned_cols=9 Identities=56% Similarity=1.335 Sum_probs=7.4
Q ss_pred cccCchHHHh
Q 033298 69 REEEPDEFWQ 78 (122)
Q Consensus 69 RE~EpEqyW~ 78 (122)
|.+||- ||.
T Consensus 8 RS~EPi-~Wg 16 (119)
T d1kf6d_ 8 RSDEPV-FWG 16 (119)
T ss_dssp CCSHHH-HHH
T ss_pred CCCCCc-hhe
Confidence 788888 886
No 3
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]}
Probab=21.70 E-value=16 Score=21.88 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=10.1
Q ss_pred CCCCCccceeee
Q 033298 87 NPMKTPIPYIII 98 (122)
Q Consensus 87 NPmktPLp~I~i 98 (122)
|||++|.+-+-+
T Consensus 2 ~P~~~~Vaavsv 13 (86)
T d1oysa2 2 NPITDFLAAISV 13 (86)
T ss_dssp CCBCSCEEEEEE
T ss_pred CCccCcccEEEE
Confidence 899999987754
No 4
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=20.87 E-value=18 Score=22.68 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=10.4
Q ss_pred CCCCCCccceeee
Q 033298 86 ENPMKTPIPYIII 98 (122)
Q Consensus 86 ~NPmktPLp~I~i 98 (122)
+|||++|++-|-+
T Consensus 2 ~~P~~~~VaAVsv 14 (105)
T d1udsa2 2 ETPIKDFVAAVSV 14 (105)
T ss_dssp SCCBCCCEEEEEE
T ss_pred CCCccCCceEEEE
Confidence 7999999886644
No 5
>d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]}
Probab=20.42 E-value=25 Score=23.31 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.7
Q ss_pred cCchHHHhhhhhhcCCCC
Q 033298 71 EEPDEFWQTAGEREGENP 88 (122)
Q Consensus 71 ~EpEqyW~s~gEReG~NP 88 (122)
.++++.|+.+.++-|-||
T Consensus 161 ~~~~~~W~~~l~~lGidp 178 (178)
T d2hafa1 161 TPVHEKWQKAIQKLGISP 178 (178)
T ss_dssp SCGGGHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHcCCCC
Confidence 457889999999999988
No 6
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.01 E-value=20 Score=24.66 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=23.0
Q ss_pred cCCCCCCCcccee---------e--------eehhhhHHHHHHHHhhcCeee
Q 033298 84 EGENPMKTPIPYI---------I--------IFGMSTPFVILAIAFANGWIK 118 (122)
Q Consensus 84 eG~NPmktPLp~I---------~--------i~gi~~PFviLAiA~AnGwIk 118 (122)
|=+|||+||..+- . +.|+..++.+.++-+..-|++
T Consensus 61 epANP~~TP~hI~PEWYFL~~yaiLR~iP~kl~GVi~~~~~i~~L~~lP~l~ 112 (156)
T d1q90d_ 61 EPANPFATPLEILPEWYFYPVFQILRVVPNKLLGVLLMAAVPAGLITVPFIE 112 (156)
T ss_dssp CBCCTTCCCSSCCCCGGGHHHHHHHHHCSCHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCCCCCCCCCCCCcchhhHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHc
Confidence 3479999997541 1 456677766666666666665
No 7
>d1uz5a1 b.85.6.1 (A:329-402) Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=19.30 E-value=21 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=13.0
Q ss_pred HHHHHHhhcCeeeccC
Q 033298 106 VILAIAFANGWIKMPV 121 (122)
Q Consensus 106 viLAiA~AnGwIk~pv 121 (122)
++-.++-|||||-+|-
T Consensus 40 ~lssl~~Angli~lp~ 55 (74)
T d1uz5a1 40 AVTSFIDADGFVEIPE 55 (74)
T ss_dssp HHHHHHHCCEEEEECS
T ss_pred HHHHHHhCCEEEEcCC
Confidence 4667899999999873
No 8
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=18.13 E-value=10 Score=23.97 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=11.0
Q ss_pred HHHHHHhhcCeee
Q 033298 106 VILAIAFANGWIK 118 (122)
Q Consensus 106 viLAiA~AnGwIk 118 (122)
.|.+|.+|-|||+
T Consensus 54 A~~~i~YA~g~lD 66 (75)
T d2pmra1 54 SFGCITYAHGLLD 66 (75)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999987
No 9
>d1x4ka1 g.39.1.3 (A:35-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.76 E-value=15 Score=20.35 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=10.2
Q ss_pred CCCcccccccccC
Q 033298 60 PKGKRKFVTREEE 72 (122)
Q Consensus 60 ~~~kkkfItRE~E 72 (122)
+-|-|.||.||+|
T Consensus 8 PIGtksfipk~~~ 20 (32)
T d1x4ka1 8 PIGTKSFIPKDNQ 20 (32)
T ss_dssp CCCSSSEEEETTE
T ss_pred cccccccccCCCC
Confidence 3467889999987
No 10
>d1lucb_ c.1.16.1 (B:) Bacterial luciferase beta chain, LuxB {Vibrio harveyi [TaxId: 669]}
Probab=16.92 E-value=29 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=25.2
Q ss_pred CCCCCccceeeeehhhhHHHHHHHHhhcCeee
Q 033298 87 NPMKTPIPYIIIFGMSTPFVILAIAFANGWIK 118 (122)
Q Consensus 87 NPmktPLp~I~i~gi~~PFviLAiA~AnGwIk 118 (122)
-|++.|.|.|.+.|.+=.-+-+|--.+.||+-
T Consensus 161 ~P~q~~~Ppi~~aa~sp~~~~~Aa~~g~~~~~ 192 (320)
T d1lucb_ 161 HAFTEGGPAQFVNATSKEVVEWAAKLGLPLVF 192 (320)
T ss_dssp CCSSTTSSCEEEECCSHHHHHHHHHHTCCEEE
T ss_pred cccCCCCccceeccCCHHHHHHHHHhCCeEEE
Confidence 38899999888888877777777777777763
Done!