BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033301
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana
GN=ARI3 PE=2 SV=1
Length = 537
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECR 81
+S + C++C+E S + C H F DC + VK+ + + +I C EC+
Sbjct: 114 TSKKTMKCDVCMEDDLPSN-VMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECK 172
Query: 82 HDLDPFSCEPIVPASLFSKWCDVLCEDYV 110
D +V L ++ L E YV
Sbjct: 173 AICDEDVVRKLVSPELADRYDRFLIESYV 201
>sp|Q9JI90|RNF14_MOUSE E3 ubiquitin-protein ligase RNF14 OS=Mus musculus GN=Rnf14 PE=2
SV=2
Length = 485
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 48 CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIVPASLFSKWCDVLCE 107
C H + + C+ Y +++++D + CP +C P + +V A LF+++ +L +
Sbjct: 239 CKHVYCKACLKDYFEIQIKDGQVKCLNCPEPQCPSVATPGQVKELVEADLFARYDRLLLQ 298
Query: 108 DYV-LGFERSYCPN 120
+ L + YCP
Sbjct: 299 STLDLMADVVYCPR 312
>sp|Q9UBS8|RNF14_HUMAN E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1
SV=1
Length = 474
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 48 CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIVPASLFSKWCDVLCE 107
C H + + C+ Y +++++D + CP +C P + +V A LF+++ +L +
Sbjct: 238 CRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQVKELVEAELFARYDRLLLQ 297
Query: 108 DYV-LGFERSYCPN 120
+ L + YCP
Sbjct: 298 SSLDLMADVVYCPR 311
>sp|Q9LVW9|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana
GN=ARI4 PE=5 SV=2
Length = 529
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85
+ C+IC+E SK + C H F DC ++ V++ + +I C +C D
Sbjct: 116 TMKCDICMEE-DLSKYAMTRMECGHRFCNDCWKEHFTVRINEGEGKRIRCMAYKCNTICD 174
Query: 86 PFSCEPIVPASLFSKWCDVLCEDYVLGFER-SYCPNT 121
+V L K+ L E YV +CP+T
Sbjct: 175 E--ARQLVSTELAEKFDRFLIESYVEDNNMVKWCPST 209
>sp|P0C8K8|ARI6_ARATH Putative E3 ubiquitin-protein ligase ARI6 OS=Arabidopsis thaliana
GN=ARI6 PE=5 SV=1
Length = 552
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 19/99 (19%)
Query: 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHD 83
G FTC IC E + C HPF C YI + D C L+C
Sbjct: 128 GREFTCGICFESYPLEETISVS--CGHPFCATCWTGYISTSINDGPG----CLMLKC--- 178
Query: 84 LDPFSCEPIVPASLFSKWCDVLC-----EDYVLGFERSY 117
P+ C PA++ D LC E Y F RSY
Sbjct: 179 --PYPC---CPAAIGRDMIDNLCSKEDKERYYRYFLRSY 212
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 8 PKENLAKEEEEEEESS--GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKV 65
P+ E ++ G S C IC+ A ++ + LC H F +CI K++
Sbjct: 79 PRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECIDKWL---- 134
Query: 66 QDDNTAKIECPGLECRHDLDPFSCE 90
++ CP CR L P C+
Sbjct: 135 ----VSRSSCP--SCRRILTPVRCD 153
>sp|Q9BRZ2|TRI56_HUMAN E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1
SV=3
Length = 755
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLE 79
E S C+IC+E + A K C H + QDC+A Q + ++ CP E
Sbjct: 12 EALSSDFLACKICLEQLRAPKTLP----CLHTYCQDCLA-------QLADGGRVRCP--E 58
Query: 80 CR 81
CR
Sbjct: 59 CR 60
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDL 84
SS C ICI + ++ + LC+H F CI K++ T++ CP CR L
Sbjct: 109 SSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWL--------TSRSSCP--SCRRIL 158
Query: 85 DPFSCE 90
P C+
Sbjct: 159 VPVKCD 164
>sp|Q9SKC3|ARI9_ARATH Probable E3 ubiquitin-protein ligase ARI9 OS=Arabidopsis thaliana
GN=ARI9 PE=2 SV=1
Length = 543
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 29 CEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDD-NTAKIECPGLECRHDLDPF 87
C IC E + +++ + C HP+ + C A YI K++D +++CP C +
Sbjct: 128 CGICFE--SYTREEIARVSCGHPYCKTCWAGYITTKIEDGPGCLRVKCPEPSCSAAVGKD 185
Query: 88 SCEPIVPASLFSKWCDVLCEDYVL-GFERSYCPN 120
E + + K+ + YV G + +CP+
Sbjct: 186 MIEDVTETKVNEKYSRYILRSYVEDGKKIKWCPS 219
>sp|E1BD59|TRI56_BOVIN E3 ubiquitin-protein ligase TRIM56 OS=Bos taurus GN=TRIM56 PE=3
SV=1
Length = 732
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 19/78 (24%)
Query: 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLE 79
E S C+IC+E + K C H + QDC+A+ + +++ CP E
Sbjct: 12 EALSSDFLACKICLEQLRVPKTLP----CLHTYCQDCLAQLAE-------GSRLRCP--E 58
Query: 80 CRHDLDPFSCEPIVPASL 97
CR + P+ PA +
Sbjct: 59 CRESV------PVPPAGV 70
>sp|Q80VI1|TRI56_MOUSE E3 ubiquitin-protein ligase TRIM56 OS=Mus musculus GN=Trim56 PE=1
SV=1
Length = 734
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLE 79
E S C+IC+E + K C H + QDC+A Q D ++ CP E
Sbjct: 12 EALSSDFLACKICLEQLHTPKTLP----CLHTYCQDCLA-------QLDIGGQVRCP--E 58
Query: 80 CR 81
CR
Sbjct: 59 CR 60
>sp|Q5REG4|DTX3_PONAB Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii GN=DTX3
PE=2 SV=1
Length = 347
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 15 EEEEEEESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVK 64
EE EE+ES TC IC+ + +K + C H F + CI + +QVK
Sbjct: 155 EEAEEQES-----TCPICLGEIQNAKTLEK---CRHSFCEGCITRALQVK 196
>sp|Q8N9I9|DTX3_HUMAN Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens GN=DTX3
PE=1 SV=2
Length = 347
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 15 EEEEEEESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVK 64
EE EE+ES TC IC+ + +K + C H F + CI + +QVK
Sbjct: 155 EEAEEQES-----TCPICLGEIQNAKTLEK---CRHSFCEGCITRALQVK 196
>sp|Q4KLT0|RN217_XENLA Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis
GN=rnf217 PE=2 SV=1
Length = 282
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85
+C +C+E + K C P +C+ +Y+ +VQ A+I+CP EC LD
Sbjct: 1 MSCRVCLE----DRSIKPLPCCKKPVCDECLKRYLSSQVQLGQ-AEIQCPITECNKHLD 54
>sp|Q84RQ8|ARI15_ARATH Probable E3 ubiquitin-protein ligase ARI15 OS=Arabidopsis thaliana
GN=ARI15 PE=2 SV=1
Length = 452
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 47 LCTHPFSQDCIAKYIQ---VKVQDDNTAKIECPGLECRHDLDPFSCEPIV--PASLFSKW 101
C+H F + C +KY++ V+ ++TA I CP +CR + P + E + +++ +
Sbjct: 53 FCSHKFCKACWSKYLKKNFFSVEKNHTA-ISCPDRDCRAAVGPETVEKLTVRDQAMYELY 111
Query: 102 CDVLCEDYVLGFERSYCP 119
+ LG++ CP
Sbjct: 112 ILKSYREKYLGWKLKLCP 129
>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium
discoideum GN=rbrA PE=3 SV=1
Length = 520
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDD-NTAKIECPGLE 79
E SG+ +C IC+E ++ F +C H + C Y+++KV + CP +
Sbjct: 132 EKSGN-VSCLICLEDYPPTQTFAL--ICNHRYCLPCYKNYLEIKVSEGPECIYTPCPAPK 188
Query: 80 CRHDLDPFSCEPIVPASLFSKWCDVLCEDYV 110
C+ + + + IV +F ++ + + + YV
Sbjct: 189 CKVIVHQDAFKQIVSPEVFERFNNFILKSYV 219
>sp|Q8L829|ARI5_ARATH Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana
GN=ARI5 PE=2 SV=1
Length = 552
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 35/100 (35%), Gaps = 21/100 (21%)
Query: 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDD-NTAKIECPGLECRH 82
G FTC IC + + C HPF C YI + D ++CP
Sbjct: 127 GREFTCGICFDSYTLEEIVSVS--CGHPFCATCWTGYISTTINDGPGCLMLKCP------ 178
Query: 83 DLDPFSCEPIVPASLFSKWCDVLC-----EDYVLGFERSY 117
+P PA++ D L E Y F RSY
Sbjct: 179 -------DPSCPAAIGRDMIDKLASKEDKEKYYRYFLRSY 211
>sp|Q949V6|ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana
GN=ARI1 PE=2 SV=1
Length = 597
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Query: 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDL 84
S +C++C+E + + C H F +C ++ V++ + + +I C +C
Sbjct: 119 SQMSCDVCMEDLPGDHMTRMD--CGHCFCNNCWTEHFTVQINEGQSKRIRCMAHQCNAIC 176
Query: 85 DPFSCEPIVPAS---LFSKWCDVLCEDYVLGFER-SYCPNT 121
D +V L +K+ L E Y+ +CP+T
Sbjct: 177 DEDIVRSLVSKKRPDLAAKFDRYLLESYIEDNRMVKWCPST 217
>sp|Q8W468|ARI8_ARATH Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana
GN=ARI8 PE=2 SV=1
Length = 567
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 29 CEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDD-NTAKIECPGLECRHDLDPF 87
C IC E + K + C HPF C YI + D + CP CR +
Sbjct: 128 CGICFETFLSDKL--HAAACGHPFCDSCWEGYITTAINDGPGCLTLRCPDPSCRAAVGQD 185
Query: 88 SCEPIVPASLFSKWCDVLCEDYVLGFERS-YCP 119
+ P K+ YV ++ +CP
Sbjct: 186 MINLLAPDKDKQKYTSYFVRSYVEDNRKTKWCP 218
>sp|Q9US46|ITT1_SCHPO E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=itt1 PE=4 SV=1
Length = 435
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHD--- 83
F C +C + + F+ C H Q C+ Y + +Q+ ++I+C L+C D
Sbjct: 172 FQCNVCFDEFNGTDCFQLTR-CGHVSCQSCLRDYYTMCIQEGMFSQIKCIDLDCGKDAPV 230
Query: 84 LDPFSCEPIVPASLFSKW 101
L E IV L +++
Sbjct: 231 LTLKELESIVGVQLTNRY 248
>sp|Q6CJM4|RAD5_KLULA DNA repair protein RAD5 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAD5 PE=3 SV=1
Length = 1114
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 26 SFTCEIC----IEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECP 76
SF C IC IEP++A + C H F + C+A+YI+ Q + I CP
Sbjct: 855 SFECAICTTECIEPLSAVSITE----CLHTFCEPCLAEYIE--FQQNKKLSINCP 903
>sp|A6NCQ9|RN222_HUMAN RING finger protein 222 OS=Homo sapiens GN=RNF222 PE=4 SV=1
Length = 220
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 16 EEEEEESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY-IQVKVQDDNTAKIE 74
E E ++SSGS C +C E + C H F DC+ KY + +V +
Sbjct: 3 EGESKDSSGSE--CPVCYEKFRDLEGASRTLSCGHVFCHDCLVKYLLSTRVDGQVQRTLV 60
Query: 75 CP 76
CP
Sbjct: 61 CP 62
>sp|Q80V91|DTX3_MOUSE Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus GN=Dtx3
PE=2 SV=2
Length = 347
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 15 EEEEEEESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVK 64
E+ EE+E+ TC IC+ + +K + C H F + CI + +QVK
Sbjct: 155 EDAEEQET-----TCPICLGEIQNAKTLEK---CRHSFCEGCITRALQVK 196
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 2 GNTLQTPKENLAKEEEE-------EEESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQ 54
GN+L T + L+KE E +E + C +C+ + K + +C H F
Sbjct: 66 GNSLSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHM 125
Query: 55 DCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86
DCI ++ T+ CP CR L P
Sbjct: 126 DCIDLWL--------TSHTTCP--LCRLALIP 147
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus
GN=Ankib1 PE=1 SV=2
Length = 1085
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 48 CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLEC 80
C H F + C ++ +K+Q+ I CP EC
Sbjct: 352 CGHDFCRGCWEAFLNLKIQEGEAHNIFCPAYEC 384
>sp|Q43260|DHE3_MAIZE Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 SV=1
Length = 411
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 48 CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86
CT P +A Y+ +VQ DN G+ H++DP
Sbjct: 39 CTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDP 77
>sp|P32849|RAD5_YEAST DNA repair protein RAD5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD5 PE=1 SV=1
Length = 1169
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 22/105 (20%)
Query: 23 SGSSFTCEICI-EPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECR 81
S S C IC EPM K + C H F + C+ +YI+ Q+ ++CP CR
Sbjct: 908 SFQSLECSICTTEPMDLDKALFTE--CGHSFCEKCLFEYIE--FQNSKNLGLKCPN--CR 961
Query: 82 HDLDP---------------FSCEPIVPASLFSKWCDVLCEDYVL 111
+ +D +P PAS SK +L E +L
Sbjct: 962 NQIDACRLLALVQTNSNSKNLEFKPYSPASKSSKITALLKELQLL 1006
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=3
Length = 966
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 10 ENLAKEEEEEEESSGSSFTCEICIEPM 36
EN+A EE EE+ SG+ F CE I +
Sbjct: 631 ENIASVEEAEEDLSGTQFVCETVIRSL 657
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1
Length = 894
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 10 ENLAKEEEEEEESSGSSFTCEICIEPM 36
EN+A EE EE+ SG+ F CE I +
Sbjct: 561 ENIASVEEAEEDLSGTQFVCETVIRSL 587
>sp|Q1JPT7|THAP1_DANRE THAP domain-containing protein 1 OS=Danio rerio GN=thap1 PE=2
SV=2
Length = 225
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 30 EICIEPMAAS-----KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDL 84
E+C++ ++A K K N+C+ F+ DC + +V DN P L
Sbjct: 31 EVCVQWVSAMSRRNFKPTKYSNICSQHFTSDCFKQECNNRVLKDNAV----PSLFTLQTQ 86
Query: 85 DPFSCEPIVPASL 97
DPFS + P ++
Sbjct: 87 DPFSADVCFPLNV 99
>sp|Q9SKC2|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana
GN=ARI11 PE=2 SV=1
Length = 542
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 29 CEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDD-NTAKIECPGLEC 80
C IC E + ++K + C HP+ + C YI K++D +++CP C
Sbjct: 139 CGICFE--SYTRKEIARVSCGHPYCKTCWTGYITTKIEDGPGCLRVKCPEPSC 189
>sp|Q5ZA07|C3H41_ORYSJ E3 ubiquitin-protein ligase makorin OS=Oryza sativa subsp. japonica
GN=MKRN PE=2 SV=1
Length = 368
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 29 CEICIE-----PMAASKKFKNKNLCTHPFSQDCIAKYIQ---VKVQDDNTAKIECP 76
C +C++ P AA +KF + C HPF CI + D N+A CP
Sbjct: 216 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRNNSPTSGMDVNSALRACP 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,076,926
Number of Sequences: 539616
Number of extensions: 1937737
Number of successful extensions: 6918
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 6869
Number of HSP's gapped (non-prelim): 124
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)