Query 033301
Match_columns 122
No_of_seqs 125 out of 1081
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:24:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.9 8.8E-24 3E-28 132.9 6.6 89 24-113 3-93 (94)
2 1jm7_A BRCA1, breast cancer ty 99.2 2.9E-11 1E-15 77.1 6.5 87 24-121 19-110 (112)
3 2ecv_A Tripartite motif-contai 99.1 6.9E-11 2.4E-15 71.5 5.4 59 24-90 17-75 (85)
4 2ct2_A Tripartite motif protei 99.1 6.8E-11 2.3E-15 72.2 4.5 62 24-92 13-74 (88)
5 2ecw_A Tripartite motif-contai 99.1 1.4E-10 4.6E-15 70.2 4.4 59 24-90 17-75 (85)
6 2ysl_A Tripartite motif-contai 99.1 7.8E-11 2.7E-15 69.7 3.0 55 24-89 18-72 (73)
7 1t1h_A Gspef-atpub14, armadill 99.1 2.2E-10 7.4E-15 68.7 5.0 67 24-103 6-73 (78)
8 2ecy_A TNF receptor-associated 99.1 1.5E-10 5.1E-15 67.4 4.1 53 24-89 13-65 (66)
9 2xeu_A Ring finger protein 4; 99.0 1.1E-10 3.9E-15 67.1 3.3 57 25-92 2-62 (64)
10 2egp_A Tripartite motif-contai 99.0 2.2E-11 7.4E-16 73.1 0.1 60 24-90 10-69 (79)
11 3ng2_A RNF4, snurf, ring finge 99.0 1.2E-10 4.1E-15 68.4 3.1 59 23-92 7-69 (71)
12 2djb_A Polycomb group ring fin 99.0 3.2E-10 1.1E-14 67.1 4.7 57 24-93 13-69 (72)
13 2ecm_A Ring finger and CHY zin 99.0 1.8E-10 6.3E-15 64.4 3.4 52 24-85 3-54 (55)
14 1g25_A CDK-activating kinase a 99.0 1.8E-10 6.3E-15 66.8 3.3 59 26-93 3-62 (65)
15 3lrq_A E3 ubiquitin-protein li 99.0 8.5E-10 2.9E-14 69.4 5.8 69 24-104 20-89 (100)
16 3ztg_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 70.1 3.4 49 24-84 11-60 (92)
17 1e4u_A Transcriptional repress 98.9 5.3E-10 1.8E-14 67.6 3.5 57 24-89 9-65 (78)
18 2yu4_A E3 SUMO-protein ligase 98.9 1.4E-09 4.7E-14 67.8 5.2 61 24-90 5-67 (94)
19 2kiz_A E3 ubiquitin-protein li 98.9 7.9E-10 2.7E-14 64.7 3.8 54 22-86 10-63 (69)
20 2ysj_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 63.0 4.2 44 24-76 18-61 (63)
21 2csy_A Zinc finger protein 183 98.9 1.8E-09 6.2E-14 65.1 5.3 49 23-85 12-60 (81)
22 2y43_A E3 ubiquitin-protein li 98.9 8.6E-10 2.9E-14 69.0 3.8 68 25-105 21-89 (99)
23 3fl2_A E3 ubiquitin-protein li 98.9 8.3E-10 2.8E-14 71.8 3.8 49 25-86 51-99 (124)
24 1v87_A Deltex protein 2; ring- 98.9 5.4E-10 1.8E-14 71.5 2.7 59 23-86 22-94 (114)
25 2d8t_A Dactylidin, ring finger 98.9 2.5E-10 8.4E-15 67.4 0.8 54 24-91 13-66 (71)
26 1x4j_A Ring finger protein 38; 98.9 3.1E-10 1.1E-14 67.6 1.1 52 24-86 21-72 (75)
27 2ect_A Ring finger protein 126 98.9 4.5E-10 1.5E-14 67.3 1.5 58 23-91 12-69 (78)
28 2ea6_A Ring finger protein 4; 98.9 1.5E-09 5.2E-14 63.1 3.2 52 24-86 13-68 (69)
29 2ep4_A Ring finger protein 24; 98.8 1.4E-09 4.9E-14 64.4 3.1 52 24-86 13-64 (74)
30 3hct_A TNF receptor-associated 98.8 1.7E-09 5.8E-14 69.8 3.2 53 24-89 16-68 (118)
31 1rmd_A RAG1; V(D)J recombinati 98.8 4.8E-09 1.6E-13 67.3 5.3 54 26-92 23-76 (116)
32 2yur_A Retinoblastoma-binding 98.8 1.9E-09 6.5E-14 64.1 3.1 50 24-85 13-63 (74)
33 2kr4_A Ubiquitin conjugation f 98.8 8.5E-09 2.9E-13 63.1 5.6 66 24-103 12-78 (85)
34 1iym_A EL5; ring-H2 finger, ub 98.8 2.9E-09 9.9E-14 59.5 2.6 50 25-85 4-54 (55)
35 1z6u_A NP95-like ring finger p 98.8 7.4E-09 2.5E-13 69.7 5.0 50 25-87 77-126 (150)
36 2ecj_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 59.5 2.9 44 24-76 13-56 (58)
37 3knv_A TNF receptor-associated 98.8 4E-10 1.4E-14 75.2 -1.4 52 24-88 29-80 (141)
38 4ayc_A E3 ubiquitin-protein li 98.8 7.7E-09 2.6E-13 68.5 4.8 47 26-86 53-99 (138)
39 1jm7_B BARD1, BRCA1-associated 98.8 1.7E-09 5.6E-14 69.8 1.2 65 24-104 20-86 (117)
40 2ckl_A Polycomb group ring fin 98.7 2.1E-09 7E-14 68.3 1.5 51 24-87 13-63 (108)
41 2l0b_A E3 ubiquitin-protein li 98.7 2.6E-09 8.9E-14 66.0 1.6 52 24-86 38-89 (91)
42 4ap4_A E3 ubiquitin ligase RNF 98.7 2.4E-09 8.2E-14 69.6 1.4 58 24-92 5-66 (133)
43 3htk_C E3 SUMO-protein ligase 98.7 5.3E-09 1.8E-13 76.2 2.7 74 24-106 179-253 (267)
44 1bor_A Transcription factor PM 98.7 3E-09 1E-13 60.1 1.0 46 24-86 4-49 (56)
45 3l11_A E3 ubiquitin-protein li 98.7 1.3E-09 4.3E-14 70.0 -1.2 48 26-86 15-62 (115)
46 2ecg_A Baculoviral IAP repeat- 98.7 1.6E-08 5.4E-13 60.3 3.6 45 24-86 23-68 (75)
47 2ecn_A Ring finger protein 141 98.6 1.7E-09 5.9E-14 63.4 -1.3 51 24-89 13-63 (70)
48 1wgm_A Ubiquitin conjugation f 98.6 2E-08 6.7E-13 63.1 3.4 52 24-89 20-72 (98)
49 2kre_A Ubiquitin conjugation f 98.6 1.2E-08 4E-13 64.4 2.3 52 24-89 27-78 (100)
50 1chc_A Equine herpes virus-1 r 98.6 2E-08 6.7E-13 58.4 2.7 50 24-86 3-52 (68)
51 3hcs_A TNF receptor-associated 98.6 4.6E-08 1.6E-12 66.6 4.3 53 24-89 16-68 (170)
52 2ckl_B Ubiquitin ligase protei 98.5 4.8E-08 1.7E-12 66.3 3.6 49 26-86 54-102 (165)
53 4ic3_A E3 ubiquitin-protein li 98.5 2.6E-08 9E-13 59.2 1.5 45 25-87 23-68 (74)
54 4ap4_A E3 ubiquitin ligase RNF 98.4 1.3E-07 4.5E-12 61.2 3.5 60 23-92 69-131 (133)
55 2c2l_A CHIP, carboxy terminus 98.4 1.5E-07 5.3E-12 67.9 3.9 53 24-89 206-258 (281)
56 2ecl_A Ring-box protein 2; RNF 98.4 3E-08 1E-12 60.0 0.1 56 24-89 13-79 (81)
57 2f42_A STIP1 homology and U-bo 98.4 4.8E-07 1.6E-11 62.6 5.2 53 24-89 104-156 (179)
58 2y1n_A E3 ubiquitin-protein li 98.4 5.1E-07 1.8E-11 69.1 5.9 54 24-90 330-383 (389)
59 2vje_B MDM4 protein; proto-onc 98.2 4.5E-07 1.5E-11 52.2 2.3 52 23-86 4-56 (63)
60 2yho_A E3 ubiquitin-protein li 98.2 1.8E-07 6.1E-12 56.4 0.2 45 25-87 17-62 (79)
61 2vje_A E3 ubiquitin-protein li 98.2 8.2E-07 2.8E-11 51.3 2.6 51 24-86 6-57 (64)
62 2d8s_A Cellular modulator of i 98.1 2.1E-06 7.3E-11 51.8 4.0 55 24-88 13-72 (80)
63 2ea5_A Cell growth regulator w 98.1 1.3E-06 4.3E-11 51.1 2.4 45 24-86 13-58 (68)
64 3dpl_R Ring-box protein 1; ubi 98.1 1.8E-06 6.1E-11 54.8 3.0 52 24-86 35-101 (106)
65 4a0k_B E3 ubiquitin-protein li 97.8 3.4E-06 1.1E-10 54.5 0.4 52 24-85 46-111 (117)
66 3t6p_A Baculoviral IAP repeat- 97.8 5.7E-06 2E-10 62.5 1.0 45 25-87 294-339 (345)
67 2ct0_A Non-SMC element 1 homol 97.7 1.8E-05 6.1E-10 47.1 2.2 53 22-85 11-63 (74)
68 2jmo_A Parkin; IBR, E3 ligase, 97.5 9.5E-07 3.2E-11 53.4 -5.0 31 92-122 2-32 (80)
69 2bay_A PRE-mRNA splicing facto 97.5 9.7E-05 3.3E-09 42.1 3.7 53 26-92 3-56 (61)
70 3k1l_B Fancl; UBC, ring, RWD, 97.5 7E-05 2.4E-09 56.6 3.4 62 24-87 306-374 (381)
71 3vk6_A E3 ubiquitin-protein li 96.6 0.00099 3.4E-08 41.6 2.1 46 28-85 3-48 (101)
72 1vyx_A ORF K3, K3RING; zinc-bi 96.5 0.0053 1.8E-07 34.6 4.6 51 23-85 3-58 (60)
73 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0038 1.3E-07 38.4 2.3 33 26-59 3-35 (101)
74 3nw0_A Non-structural maintena 94.8 0.017 5.9E-07 41.2 2.7 54 23-87 177-230 (238)
75 2cs3_A Protein C14ORF4, MY039 94.8 0.052 1.8E-06 32.5 4.3 51 24-81 13-68 (93)
76 2ct7_A Ring finger protein 31; 91.3 0.0025 8.5E-08 38.6 -5.4 26 94-119 3-29 (86)
77 2d8v_A Zinc finger FYVE domain 89.9 0.078 2.7E-06 30.4 0.5 32 25-61 7-39 (67)
78 2o35_A Hypothetical protein DU 84.9 0.64 2.2E-05 28.7 2.5 16 52-67 43-58 (105)
79 3fyb_A Protein of unknown func 83.1 0.59 2E-05 28.9 1.8 16 52-67 42-57 (104)
80 2ko5_A Ring finger protein Z; 80.6 0.59 2E-05 28.7 1.1 71 1-87 1-74 (99)
81 1weo_A Cellulose synthase, cat 74.2 11 0.00038 22.7 5.5 53 23-84 13-68 (93)
82 1z60_A TFIIH basal transcripti 72.3 1.7 5.9E-05 24.2 1.5 30 27-57 16-45 (59)
83 3mjh_B Early endosome antigen 65.8 1.2 4.1E-05 22.0 -0.1 17 24-40 3-19 (34)
84 3a1b_A DNA (cytosine-5)-methyl 62.7 4 0.00014 27.2 2.0 38 21-62 74-113 (159)
85 1z2q_A LM5-1; membrane protein 61.2 3.4 0.00012 24.3 1.3 36 24-59 19-54 (84)
86 2yw8_A RUN and FYVE domain-con 61.0 3.4 0.00012 24.2 1.3 36 24-59 17-52 (82)
87 3t7l_A Zinc finger FYVE domain 60.7 3 0.0001 24.9 1.0 36 25-60 19-54 (90)
88 1joc_A EEA1, early endosomal a 60.3 3 0.0001 26.5 1.0 35 26-60 69-103 (125)
89 1zbd_B Rabphilin-3A; G protein 58.6 3.6 0.00012 26.6 1.2 33 24-57 53-87 (134)
90 1vfy_A Phosphatidylinositol-3- 56.8 4.1 0.00014 23.2 1.1 32 27-58 12-43 (73)
91 2pv0_B DNA (cytosine-5)-methyl 54.3 7 0.00024 29.8 2.3 36 22-61 89-126 (386)
92 2vpb_A Hpygo1, pygopus homolog 54.1 7.8 0.00027 21.7 2.0 36 23-58 5-41 (65)
93 3lqh_A Histone-lysine N-methyl 54.0 1.8 6.1E-05 29.5 -0.9 76 27-105 3-84 (183)
94 1x4u_A Zinc finger, FYVE domai 52.5 5.3 0.00018 23.4 1.1 35 24-58 12-46 (84)
95 1wfk_A Zinc finger, FYVE domai 51.9 5 0.00017 23.9 1.0 35 25-59 8-42 (88)
96 2lbm_A Transcriptional regulat 50.9 48 0.0016 21.5 5.8 52 22-82 59-116 (142)
97 2hu9_A MERP, mercuric transpor 49.4 7.5 0.00026 25.0 1.6 38 73-122 2-42 (130)
98 1y02_A CARP2, FYVE-ring finger 48.3 6.2 0.00021 25.0 1.0 36 26-61 19-54 (120)
99 2jvx_A NF-kappa-B essential mo 45.2 4.1 0.00014 19.1 -0.1 18 25-42 2-19 (28)
100 2k16_A Transcription initiatio 43.9 10 0.00035 21.5 1.4 35 23-58 15-49 (75)
101 1dvp_A HRS, hepatocyte growth 43.3 6.3 0.00021 27.2 0.5 35 26-60 161-195 (220)
102 2jx1_A Myelin transcription fa 43.0 11 0.00038 18.1 1.2 13 72-84 1-13 (31)
103 3zyq_A Hepatocyte growth facto 42.9 7.1 0.00024 27.2 0.8 35 26-60 164-198 (226)
104 2zet_C Melanophilin; complex, 42.1 8.9 0.0003 25.3 1.1 33 25-57 67-100 (153)
105 2cur_A Skeletal muscle LIM-pro 41.7 20 0.00068 19.4 2.4 38 21-61 26-63 (69)
106 1x61_A Thyroid receptor intera 40.7 22 0.00074 19.4 2.5 39 21-62 28-66 (72)
107 4fo9_A E3 SUMO-protein ligase 40.4 15 0.0005 27.7 2.2 83 27-120 216-299 (360)
108 2d8x_A Protein pinch; LIM doma 38.7 18 0.0006 19.7 1.9 39 21-62 26-64 (70)
109 1wig_A KIAA1808 protein; LIM d 38.5 9.3 0.00032 21.3 0.7 39 20-60 25-63 (73)
110 2xb1_A Pygopus homolog 2, B-ce 37.2 9.9 0.00034 23.3 0.7 82 25-108 2-92 (105)
111 3ql9_A Transcriptional regulat 36.7 27 0.00091 22.3 2.7 36 22-61 53-88 (129)
112 3oj3_I Tumor necrosis factor a 35.7 22 0.00075 18.8 1.8 14 50-63 35-48 (49)
113 2ffw_A Midline-1; B-BOX, ring 35.6 20 0.00068 20.5 1.8 37 24-61 28-65 (78)
114 2jyp_A Aragonite protein AP7; 35.4 24 0.00082 16.8 1.7 29 22-54 5-33 (36)
115 3f6q_B LIM and senescent cell 34.4 17 0.00058 19.7 1.3 37 21-60 34-70 (72)
116 1x6a_A LIMK-2, LIM domain kina 34.3 29 0.00099 19.4 2.4 42 20-62 35-76 (81)
117 3mpx_A FYVE, rhogef and PH dom 34.0 8.6 0.00029 28.9 0.0 39 24-63 373-412 (434)
118 2iyb_E Testin, TESS, TES; LIM 33.7 13 0.00044 20.1 0.7 33 24-59 30-63 (65)
119 1x4s_A Protein FON, zinc finge 32.5 25 0.00086 19.4 1.8 34 26-60 11-45 (59)
120 2l3k_A Rhombotin-2, linker, LI 32.2 23 0.00078 21.8 1.8 44 20-65 30-73 (123)
121 2dar_A PDZ and LIM domain prot 31.4 29 0.001 19.9 2.1 36 22-60 47-82 (90)
122 1we9_A PHD finger family prote 30.3 15 0.0005 20.1 0.6 35 23-57 3-37 (64)
123 1f62_A Transcription factor WS 29.6 34 0.0012 17.5 2.0 31 28-59 2-32 (51)
124 2gmg_A Hypothetical protein PF 29.5 29 0.00098 21.5 1.9 23 45-82 70-92 (105)
125 2d8z_A Four and A half LIM dom 28.7 36 0.0012 18.3 2.1 37 21-60 26-62 (70)
126 2a20_A Regulating synaptic mem 28.5 21 0.0007 19.8 0.9 14 23-36 6-19 (62)
127 1wfl_A Zinc finger protein 216 28.4 16 0.00055 21.2 0.5 27 25-54 24-50 (74)
128 1wep_A PHF8; structural genomi 28.2 64 0.0022 18.2 3.2 61 24-91 10-71 (79)
129 2ri7_A Nucleosome-remodeling f 27.6 15 0.0005 24.2 0.3 76 23-105 5-81 (174)
130 3i2d_A E3 SUMO-protein ligase 27.6 60 0.0021 24.5 3.7 55 27-90 250-304 (371)
131 2xjy_A Rhombotin-2; oncoprotei 26.8 23 0.00077 21.8 1.1 39 23-63 91-129 (131)
132 2das_A Zinc finger MYM-type pr 26.1 30 0.001 19.2 1.4 40 21-60 15-55 (62)
133 1nyp_A Pinch protein; LIM doma 25.7 26 0.00088 18.7 1.1 37 21-60 26-62 (66)
134 3v43_A Histone acetyltransfera 25.2 85 0.0029 19.0 3.6 48 25-76 4-59 (112)
135 2yqq_A Zinc finger HIT domain- 24.8 72 0.0025 17.2 2.8 34 25-63 11-45 (56)
136 2kzy_A ZNF216-A20, zfand5 prot 24.8 65 0.0022 17.9 2.6 21 50-70 29-49 (62)
137 2l4z_A DNA endonuclease RBBP8, 24.4 55 0.0019 20.2 2.6 34 24-59 86-120 (123)
138 1x4l_A Skeletal muscle LIM-pro 24.2 48 0.0016 17.9 2.1 36 21-59 30-65 (72)
139 2rgt_A Fusion of LIM/homeobox 23.4 57 0.002 21.1 2.6 42 21-63 88-129 (169)
140 1x62_A C-terminal LIM domain p 23.0 35 0.0012 19.0 1.4 36 23-61 38-73 (79)
141 2jyd_A F5 domain of myelin tra 22.5 39 0.0013 17.7 1.3 15 70-84 7-21 (46)
142 1ef4_A Subunit N, DNA-directed 22.5 1E+02 0.0035 16.6 3.2 14 71-86 2-15 (55)
143 1wd2_A Ariadne-1 protein homol 22.0 30 0.001 18.8 0.9 35 25-59 5-43 (60)
144 2apo_B Ribosome biogenesis pro 21.8 63 0.0021 17.8 2.1 37 72-110 18-54 (60)
145 1x4k_A Skeletal muscle LIM-pro 21.4 34 0.0011 18.5 1.0 37 21-60 28-64 (72)
146 2d8y_A Eplin protein; LIM doma 21.3 73 0.0025 18.1 2.6 34 23-59 39-72 (91)
147 2egq_A FHL1 protein; LIM domai 21.3 52 0.0018 18.0 1.9 36 21-59 41-76 (77)
148 2xqn_T Testin, TESS; metal-bin 20.8 76 0.0026 19.2 2.7 51 21-86 25-75 (126)
149 1m3v_A FLIN4, fusion of the LI 20.5 63 0.0022 19.6 2.3 80 22-120 28-108 (122)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.89 E-value=8.8e-24 Score=132.87 Aligned_cols=89 Identities=18% Similarity=0.418 Sum_probs=79.2
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCC--CChhhcccCCCHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHD--LDPFSCEPIVPASLFSKW 101 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~--i~~~~i~~~l~~~~~~ky 101 (122)
...++|+||++++..+..+ .+.+|||.||++||..|+..+|.+|...+++||.++|+.. ++++.++.+|+++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~-~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMT-TIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEE-EETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccce-EcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 4578999999999877655 2457999999999999999999987667999999999999 999999999999999999
Q ss_pred HHHHHhhhhcCC
Q 033301 102 CDVLCEDYVLGF 113 (122)
Q Consensus 102 ~~~~~~~~i~~~ 113 (122)
++++++.++..+
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999999998543
No 2
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=2.9e-11 Score=77.10 Aligned_cols=87 Identities=20% Similarity=0.423 Sum_probs=54.9
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC-CCHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI-VPASLFSKWC 102 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~-l~~~~~~ky~ 102 (122)
.....|+||++.+..+ +.++|||.||..|+..|+... .....|| .|+..+....+... .-.++.+.+.
T Consensus 19 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEP----VSTKCDHIFCKFCMLKLLNQK-----KGPSQCP--LCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSC----CBCTTSCCCCSHHHHHHHHSS-----SSSCCCT--TTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCe----EECCCCCHHHHHHHHHHHHhC-----CCCCCCc--CCCCcCCHhhcCccHHHHHHHHHHH
Confidence 3457899999998544 367999999999999998743 2357999 69999988776543 2345555555
Q ss_pred HHHH----hhhhcCCCceecCCC
Q 033301 103 DVLC----EDYVLGFERSYCPNT 121 (122)
Q Consensus 103 ~~~~----~~~i~~~~~~~CP~~ 121 (122)
+.+. +..+...+..++|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~ 110 (112)
T 1jm7_A 88 KIICAFQLDTGLEYANSYNFAKK 110 (112)
T ss_dssp HHHHHHHHHTCCCCCC-------
T ss_pred HHHHHhccCcccccccccccccC
Confidence 4433 333333344667754
No 3
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.9e-11 Score=71.54 Aligned_cols=59 Identities=27% Similarity=0.620 Sum_probs=47.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE 90 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 90 (122)
.....|+||++.+..+ + .++|||.||..|+..|+..+... ...+.|| .|+..+...++.
T Consensus 17 ~~~~~C~IC~~~~~~p--~--~~~CgH~fC~~Ci~~~~~~~~~~--~~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP--L--SLDCGHSFCQACLTANHKKSMLD--KGESSCP--VCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSC--B--CCSSSCCBCTTHHHHHHHHHHHT--TSCCCCT--TTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCc--e--eCCCCCHHHHHHHHHHHHHhhcC--CCCCcCC--CCCCccCHHhcC
Confidence 4568999999998644 2 67999999999999999987654 2378999 599988876553
No 4
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.8e-11 Score=72.23 Aligned_cols=62 Identities=19% Similarity=0.462 Sum_probs=47.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
.....|+||++.+...+.....++|||.||..||..|+... ...++|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-----INGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-----SSCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-----CCCcCCC--CCCCcccchhHHHH
Confidence 45678999999997643211478999999999999999753 2467999 69998877666544
No 5
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=1.4e-10 Score=70.22 Aligned_cols=59 Identities=25% Similarity=0.509 Sum_probs=46.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE 90 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 90 (122)
...+.|+||++.+..+ +.++|||.||..|+..|+..... ......|| .|+..+....+.
T Consensus 17 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~--~~~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP----VSADCNHSFCRACITLNYESNRN--TDGKGNCP--VCRVPYPFGNLK 75 (85)
T ss_dssp CTTTSCTTTCSCCSSC----EECTTSCCBCHHHHHHHHHHSBC--TTSCBCCT--TTCCCCCTTCCE
T ss_pred ccCCCCcCCChhhCcc----eeCCCCCHHHHHHHHHHHHhccC--CCCCCCCC--CCCCcCCHHhCC
Confidence 4567999999998654 26789999999999999987642 23478999 699988876543
No 6
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=7.8e-11 Score=69.69 Aligned_cols=55 Identities=20% Similarity=0.521 Sum_probs=43.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
.....|+||++.+... +.++|||.||.+|+..|+.. ......|| .|+..+...++
T Consensus 18 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP--~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGET-----SCGFFKCP--LCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSSE----EECTTCCEEEHHHHHHHCSS-----SCSCCCCS--SSCCCCCCCCC
T ss_pred ccCCEeccCCcccCCe----EEcCCCChhhHHHHHHHHHc-----CCCCCCCC--CCCCcCCcccC
Confidence 4568999999998643 25799999999999999862 23577999 69998887655
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=2.2e-10 Score=68.69 Aligned_cols=67 Identities=22% Similarity=0.451 Sum_probs=50.5
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc-cCCCHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE-PIVPASLFSKWC 102 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~-~~l~~~~~~ky~ 102 (122)
...+.|+||++.+..+ +.++|||.||+.|+..|+.. ...+|| .|+..+....+. ...-.+++++|.
T Consensus 6 ~~~~~C~IC~~~~~~P----v~~~CgH~fc~~Ci~~~~~~-------~~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP----VIVSTGQTYERSSIQKWLDA-------GHKTCP--KSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCCSSE----EEETTTEEEEHHHHHHHHTT-------TCCBCT--TTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccccCC----EEcCCCCeecHHHHHHHHHH-------CcCCCC--CCcCCCChhhCccCHHHHHHHHHHH
Confidence 4578999999998655 35799999999999999952 146899 599988866543 344466666665
Q ss_pred H
Q 033301 103 D 103 (122)
Q Consensus 103 ~ 103 (122)
+
T Consensus 73 ~ 73 (78)
T 1t1h_A 73 E 73 (78)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=67.38 Aligned_cols=53 Identities=19% Similarity=0.560 Sum_probs=42.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
.....|+||++.+..+ + .++|||.||..|+..|+. ....+|| .|+..+...++
T Consensus 13 ~~~~~C~IC~~~~~~p--~--~~~CgH~fC~~Ci~~~~~-------~~~~~CP--~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP--K--QTECGHRFCESCMAALLS-------SSSPKCT--ACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSC--C--CCSSSCCCCHHHHHHHHT-------TSSCCCT--TTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCe--e--ECCCCCHHHHHHHHHHHH-------hCcCCCC--CCCcCCChhhc
Confidence 4568999999998644 3 589999999999999986 1355899 69998887654
No 9
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=67.09 Aligned_cols=57 Identities=23% Similarity=0.642 Sum_probs=45.0
Q ss_pred Ccccccccccccccc----ccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 25 SSFTCEICIEPMAAS----KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
....|+||++.+... ..+ ..++|||.||.+|+..|+.. ..+|| .|+..+...++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP--~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLI-VSTECGHVFCSQCLRDSLKN--------ANTCP--TCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCE-EEETTSCEEEHHHHHHHHHH--------CSBCT--TTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCE-EeCCCCCchhHHHHHHHHHc--------CCCCC--CCCccCCccceeee
Confidence 457899999998643 122 37899999999999999875 23899 69999988877654
No 10
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-11 Score=73.12 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=46.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE 90 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 90 (122)
.....|+||++.+..+ +.++|||.||.+|+..|+...... ......|| .|+..+....+.
T Consensus 10 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP--~Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELLTEP----LSLDCGHSLCRACITVSNKEAVTS-MGGKSSCP--VCGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEECSSC----CCCSSSCCCCHHHHSCCCCCCSSS-CCCCCCCS--SSCCCCCSSGGG
T ss_pred ccCCCCcCCCcccCCe----eECCCCCHHHHHHHHHHHHhcccC-CCCCCcCC--CCCCcCCHhhCC
Confidence 4568899999998654 367999999999999998764432 24578999 699988766543
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.03 E-value=1.2e-10 Score=68.43 Aligned_cols=59 Identities=22% Similarity=0.638 Sum_probs=46.2
Q ss_pred CCCcccccccccccccc----ccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 23 SGSSFTCEICIEPMAAS----KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
......|+||++.+..+ ... +.++|||.||.+|+..|+... .+|| .|+..+....+..+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLI-VSTECGHVFCSQCLRDSLKNA--------NTCP--TCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCE-EECTTSCEEEHHHHHHHHHHC--------SBCT--TTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCe-EeCCCCChHhHHHHHHHHHcC--------CCCC--CCCCccChhheeec
Confidence 45678999999998643 222 378999999999999998642 3899 69999988777654
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.2e-10 Score=67.11 Aligned_cols=57 Identities=19% Similarity=0.396 Sum_probs=44.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIV 93 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l 93 (122)
.....|+||++.+..+ + .+.+|||.||..|+..|+.. ...|| .|+..+...++...+
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP--~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--T-TITECLHTFCKSCIVRHFYY--------SNRCP--KCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSC--E-ECSSSCCEECHHHHHHHHHH--------CSSCT--TTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCc--C-EECCCCCHHHHHHHHHHHHc--------CCcCC--CcCcccCcccccccC
Confidence 4567999999998653 2 24599999999999999964 35899 699999887765544
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.02 E-value=1.8e-10 Score=64.44 Aligned_cols=52 Identities=23% Similarity=0.544 Sum_probs=40.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
.....|+||++.+...+.....++|+|.||.+|+..|+... .+|| .|+..|+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--------YRCP--LCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--------CCCT--TSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--------CcCC--CCCCcCC
Confidence 45678999999985432222478999999999999998763 5899 6987664
No 14
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01 E-value=1.8e-10 Score=66.79 Aligned_cols=59 Identities=19% Similarity=0.373 Sum_probs=43.6
Q ss_pred ccccccccc-cccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccCC
Q 033301 26 SFTCEICIE-PMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIV 93 (122)
Q Consensus 26 ~~~C~IC~~-~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l 93 (122)
...|+||++ .+..+......++|||.||..|+..++.. ...+|| .|+..+....++..+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP--~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-------GAGNCP--ECGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-------TSSSCT--TTCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-------CCCcCC--CCCCccccccceeec
Confidence 568999999 55444221125799999999999999762 146899 699999887776543
No 15
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=8.5e-10 Score=69.38 Aligned_cols=69 Identities=19% Similarity=0.426 Sum_probs=51.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC-CCHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI-VPASLFSKWC 102 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~-l~~~~~~ky~ 102 (122)
.....|+||++.+..+ + ..++|||.||..||..|+... ...|| .|+..+....+... +..++.+.+.
T Consensus 20 ~~~~~C~IC~~~~~~p--~-~~~~CgH~FC~~Ci~~~~~~~-------~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--R-LCPHCSKLCCFSCIRRWLTEQ-------RAQCP--HCRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HHHTBCTTTCSBCSSE--E-ECTTTCCEEEHHHHHHHHHHT-------CSBCT--TTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred CCCCCCccCCccccCc--c-ccCCCCChhhHHHHHHHHHHC-------cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHH
Confidence 4567899999999654 2 138999999999999999864 16899 69999988776554 3345555554
Q ss_pred HH
Q 033301 103 DV 104 (122)
Q Consensus 103 ~~ 104 (122)
++
T Consensus 88 ~l 89 (100)
T 3lrq_A 88 TL 89 (100)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 16
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.97 E-value=3e-10 Score=70.09 Aligned_cols=49 Identities=20% Similarity=0.550 Sum_probs=39.4
Q ss_pred CCccccccccccccccccccccCC-cCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNL-CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDL 84 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i 84 (122)
...+.|+||++.+..+ +.++ |||.||..||..|+... ....|| .|+..+
T Consensus 11 ~~~~~C~IC~~~~~~p----~~~~~CgH~fC~~Ci~~~~~~~------~~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA----VVIPCCGNSYCDECIRTALLES------DEHTCP--TCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSC----EECTTTCCEECHHHHHHHHHHC------TTCCCT--TTCCSS
T ss_pred CcCCCCCCCChhhcCc----eECCCCCCHHHHHHHHHHHHhc------CCCcCc--CCCCcC
Confidence 4568999999998654 3567 99999999999998742 246999 699886
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=5.3e-10 Score=67.60 Aligned_cols=57 Identities=18% Similarity=0.366 Sum_probs=41.2
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
....+|+||++.+...+.....+.|||.||+.||..++.. ....|| .|+..+....+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------~~~~CP--~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------ENGLCP--ACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------SCSBCT--TTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------CCCCCC--CCCCccCCCch
Confidence 4567899999988644332112359999999999988642 246899 69998876554
No 18
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=67.77 Aligned_cols=61 Identities=31% Similarity=0.616 Sum_probs=47.5
Q ss_pred CCccccccccccccccccccccC-CcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCC-CChhhcc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKN-LCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHD-LDPFSCE 90 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~-i~~~~i~ 90 (122)
...+.|+||++.+..+ +.+ .|||.||+.||..|+...- +.....+||..+|+.. +...++.
T Consensus 5 ~~~~~CPI~~~~~~dP----V~~~~cGh~f~r~cI~~~l~~~~--~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP----VKNKVCGHTYEEDAIVRMIESRQ--KRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBCSSE----EEESSSCCEEEHHHHHHHHHHHH--TTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchhcCC----EEcCCCCCeecHHHHHHHHHHcc--CcCCCCCCCcCcCcccccCHhhCc
Confidence 4568999999999765 356 5999999999999998652 1234679999999977 7766553
No 19
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=7.9e-10 Score=64.68 Aligned_cols=54 Identities=24% Similarity=0.688 Sum_probs=41.7
Q ss_pred hCCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.......|+||++.+...... ..++|+|.||..|+..|+... .+|| .|+..|..
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDV-RRLPCMHLFHQVCVDQWLITN--------KKCP--ICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCE-EECTTSCEEEHHHHHHHHHHC--------SBCT--TTCSBSCS
T ss_pred cCCCCCCCeeCCccccCCCcE-EEeCCCCHHHHHHHHHHHHcC--------CCCc--CcCccccC
Confidence 345567899999998654444 378999999999999998752 2599 69987654
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.1e-09 Score=63.04 Aligned_cols=44 Identities=23% Similarity=0.574 Sum_probs=35.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECP 76 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP 76 (122)
.....|+||++.+..+ +.++|||.||..|+..|+... ....+||
T Consensus 18 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP 61 (63)
T 2ysj_A 18 QEEVICPICLDILQKP----VTIDCGHNFCLKCITQIGETS-----CGFFKCP 61 (63)
T ss_dssp CCCCBCTTTCSBCSSC----EECTTSSEECHHHHHHHHHHC-----SSCCCCS
T ss_pred ccCCCCCcCCchhCCe----EEeCCCCcchHHHHHHHHHcC-----CCCCcCc
Confidence 4568999999998644 357999999999999999851 2356888
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.8e-09 Score=65.13 Aligned_cols=49 Identities=20% Similarity=0.492 Sum_probs=40.1
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
....+.|+||++.+..+ +.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~--------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRA--------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHH--------CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHC--------CCcCC--CcCcccc
Confidence 34568999999998654 36899999999999999964 34899 6998886
No 22
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.91 E-value=8.6e-10 Score=69.01 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=49.1
Q ss_pred CccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc-CCCHHHHHHHHH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP-IVPASLFSKWCD 103 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~-~l~~~~~~ky~~ 103 (122)
....|+||++.+..+ + .+.+|||.||..|+..|+.. ...|| .|+..+....+.. ..-.+++++|.+
T Consensus 21 ~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--M-IIPQCSHNYCSLCIRKFLSY--------KTQCP--TCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHTBCTTTCSBCSSE--E-ECTTTCCEEEHHHHHHHHTT--------CCBCT--TTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCcccCChhhCCc--C-EECCCCCHhhHHHHHHHHHC--------CCCCC--CCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 457899999998654 2 13599999999999999862 24899 6999888765432 333456666655
Q ss_pred HH
Q 033301 104 VL 105 (122)
Q Consensus 104 ~~ 105 (122)
..
T Consensus 88 ~~ 89 (99)
T 2y43_A 88 AR 89 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.91 E-value=8.3e-10 Score=71.80 Aligned_cols=49 Identities=29% Similarity=0.726 Sum_probs=39.9
Q ss_pred CccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....|| .|+..+..
T Consensus 51 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP----ITTVCQHNVCKDCLDRSFRA-------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCT--TTCCBCCT
T ss_pred cCCCCCcCChHHcCc----EEeeCCCcccHHHHHHHHhH-------CcCCCC--CCCccCCC
Confidence 346899999998654 36799999999999999971 245899 69998876
No 24
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.90 E-value=5.4e-10 Score=71.54 Aligned_cols=59 Identities=20% Similarity=0.485 Sum_probs=42.4
Q ss_pred CCCccccccccccccccc--------------cccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 23 SGSSFTCEICIEPMAASK--------------KFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~--------------~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
......|+||++++.... .....++|+|.||..||..|+.... ......|| .|+..+..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~---~~~~~~CP--~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN---KDGSLQCP--SCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC---CSSCCBCT--TTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc---CCCCCcCC--CCCCccCC
Confidence 345579999999985432 1112689999999999999995432 23467999 69987654
No 25
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.5e-10 Score=67.42 Aligned_cols=54 Identities=19% Similarity=0.389 Sum_probs=43.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP 91 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 91 (122)
.....|+||++.+... +.++|||.||..|+..|+.. ...|| .|+..|....+..
T Consensus 13 ~~~~~C~IC~~~~~~~----~~~~CgH~fC~~Ci~~~~~~--------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP----VSLPCKHVFCYLCVKGASWL--------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSCCBCSSSSSBCSSE----EEETTTEEEEHHHHHHCTTC--------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCccCCcccCCC----EEccCCCHHHHHHHHHHHHC--------CCcCc--CcCchhCHhhccC
Confidence 4567899999998544 36789999999999988742 15899 6999998877654
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=3.1e-10 Score=67.61 Aligned_cols=52 Identities=25% Similarity=0.696 Sum_probs=41.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++++...+.+ ..++|+|.||.+|+..|+... ..|| .|+..+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~--------~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKAN--------RTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHC--------SSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcC--------CcCc--CcCCcCCC
Confidence 4567899999998766555 378899999999999998642 3799 69987765
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.87 E-value=4.5e-10 Score=67.27 Aligned_cols=58 Identities=28% Similarity=0.653 Sum_probs=45.2
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP 91 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 91 (122)
......|+||++.+.....+ ..++|+|.||..|+..|+... ..|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~~~~C~H~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESV-RQLPCNHLFHDSCIVPWLEQH--------DSCP--VCRKSLTGQNTAT 69 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCE-EECTTSCEEETTTTHHHHTTT--------CSCT--TTCCCCCCSCSCC
T ss_pred CCCCCCCeeCCccccCCCCE-EEeCCCCeecHHHHHHHHHcC--------CcCc--CcCCccCCcccCC
Confidence 34568999999998766554 367999999999999998521 4899 6999888766543
No 28
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.5e-09 Score=63.14 Aligned_cols=52 Identities=21% Similarity=0.669 Sum_probs=40.1
Q ss_pred CCcccccccccccccc----ccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAAS----KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++.+... ..+ +.++|||.||.+|+..|+.. ...|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~--------~~~CP--~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLI-VSTECGHVFCSQCLRDSLKN--------ANTCP--TCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCE-EECSSSCEEEHHHHHHHHHH--------CSSCT--TTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCe-EeCCCCChhcHHHHHHHHHc--------CCCCC--CCCCccCc
Confidence 4568899999998643 112 37899999999999999875 23899 69987753
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=64.41 Aligned_cols=52 Identities=23% Similarity=0.652 Sum_probs=41.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++.+.....+ ..++|+|.||.+|+..|+... ..|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~-~~~~C~H~f~~~Ci~~~~~~~--------~~CP--~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDEL-GICPCKHAFHRKCLIKWLEVR--------KVCP--LCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCE-EEETTTEEEEHHHHHHHHHHC--------SBCT--TTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcE-EEcCCCCEecHHHHHHHHHcC--------CcCC--CcCccccc
Confidence 4567899999998766555 366999999999999999652 2799 69987654
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=1.7e-09 Score=69.84 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=41.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+..+ + .++|||.||..||..|+...- .+|| .|+..+....+
T Consensus 16 ~~~~~C~IC~~~~~~p--~--~~~CgH~fC~~Ci~~~~~~~~-------~~CP--~Cr~~~~~~~~ 68 (118)
T 3hct_A 16 ESKYECPICLMALREA--V--QTPCGHRFCKACIIKSIRDAG-------HKCP--VDNEILLENQL 68 (118)
T ss_dssp CGGGBCTTTCSBCSSE--E--ECTTSCEEEHHHHHHHHHHHC-------SBCT--TTCCBCCGGGC
T ss_pred CCCCCCCcCChhhcCe--E--ECCcCChhhHHHHHHHHhhCC-------CCCC--CCCCCcCHHhc
Confidence 4557999999998654 3 579999999999999997641 1788 58877776544
No 31
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.83 E-value=4.8e-09 Score=67.33 Aligned_cols=54 Identities=31% Similarity=0.623 Sum_probs=43.8
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
.+.|+||++.+..+ +.++|||.||..|+..|+... ...|| .|+..+...++...
T Consensus 23 ~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~-------~~~CP--~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 23 SISCQICEHILADP----VETSCKHLFCRICILRCLKVM-------GSYCP--SCRYPCFPTDLESP 76 (116)
T ss_dssp HTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT-------CSBCT--TTCCBCCGGGCBCC
T ss_pred CCCCCCCCcHhcCc----EEcCCCCcccHHHHHHHHhHC-------cCcCC--CCCCCCCHhhcccc
Confidence 57899999998654 357999999999999999762 34799 69999988776543
No 32
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.83 E-value=1.9e-09 Score=64.11 Aligned_cols=50 Identities=20% Similarity=0.535 Sum_probs=39.4
Q ss_pred CCccccccccccccccccccccCC-cCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNL-CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
.....|+||++.+..+ + .++ |||.||..|+..|+... ....|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p--~--~~~~CgH~fC~~Ci~~~~~~~------~~~~CP--~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDA--V--VIPCCGNSYCDECIRTALLES------DEHTCP--TCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTC--E--ECSSSCCEECTTHHHHHHHHS------SSSCCS--SSCCSSC
T ss_pred CCCCCCcCCChHHhCC--e--EcCCCCCHHHHHHHHHHHHhc------CCCcCC--CCCCcCC
Confidence 4568999999998654 3 567 99999999999999853 246899 6998643
No 33
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=8.5e-09 Score=63.07 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=48.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc-CCCHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP-IVPASLFSKWC 102 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~-~l~~~~~~ky~ 102 (122)
...+.|+||++.+..+ +.++|||.||+.||..|+.. ..+|| .|+..+....+.. ..-..+++.|.
T Consensus 12 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP--~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP----VRLPSGTVMDRSIILRHLLN--------SPTDP--FNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHH--------CSBCT--TTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred chheECcccCchhcCC----eECCCCCEECHHHHHHHHhc--------CCCCC--CCcCCCChHhcchHHHHHHHHHHHH
Confidence 4578999999999766 36789999999999999974 24799 5998888765432 12244555554
Q ss_pred H
Q 033301 103 D 103 (122)
Q Consensus 103 ~ 103 (122)
.
T Consensus 78 ~ 78 (85)
T 2kr4_A 78 R 78 (85)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.78 E-value=2.9e-09 Score=59.48 Aligned_cols=50 Identities=20% Similarity=0.644 Sum_probs=38.2
Q ss_pred CccccccccccccccccccccCC-cCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 25 SSFTCEICIEPMAASKKFKNKNL-CTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~-C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
....|+||++++..++... .++ |+|.||.+|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~-~~~~C~H~f~~~Ci~~w~~~--------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEAR-FLPRCGHGFHAECVDMWLGS--------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCE-ECSSSCCEECTTHHHHTTTT--------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceE-ECCCCCCcccHHHHHHHHHc--------CCcCc--CCCCEeE
Confidence 4578999999997655442 554 9999999999999742 23799 6987664
No 35
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.78 E-value=7.4e-09 Score=69.70 Aligned_cols=50 Identities=32% Similarity=0.719 Sum_probs=40.9
Q ss_pred CccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
..+.|+||++.+..+ +.++|||.||..|+..|+.. ....|| .|+..+...
T Consensus 77 ~~~~C~IC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~-------~~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP----VTTECFHNVCKDCLQRSFKA-------QVFSCP--ACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE----EECTTSCEEEHHHHHHHHHT-------TCCBCT--TTCCBCCTT
T ss_pred cCCEeecCChhhcCC----EEcCCCCchhHHHHHHHHHh-------CCCcCC--CCCccCCCC
Confidence 346899999998654 36899999999999999973 245899 699988876
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.7e-09 Score=59.53 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=34.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECP 76 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP 76 (122)
.....|+||++.+..+ +.++|||.||..|+..|+.. .....+||
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-----~~~~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWED-----LERDFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTS-----SCCSCCCS
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHh-----cCCCCCCC
Confidence 4567999999998654 36899999999999999753 12356788
No 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.77 E-value=4e-10 Score=75.23 Aligned_cols=52 Identities=19% Similarity=0.525 Sum_probs=40.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFS 88 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~ 88 (122)
...+.|+||++.+..+ + .+.|||.||..||..|+. . ....|| .|+..+....
T Consensus 29 ~~~~~C~IC~~~~~~p--v--~~~CgH~FC~~Ci~~~~~----~---~~~~CP--~Cr~~~~~~~ 80 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP--F--QAQCGHRYCSFCLASILS----S---GPQNCA--ACVHEGIYEE 80 (141)
T ss_dssp CGGGBCTTTCSBCSSE--E--ECTTSCEEEHHHHHHHGG----G---SCEECH--HHHHTTCCCT
T ss_pred CcCcCCCCCChhhcCc--E--ECCCCCccCHHHHHHHHh----c---CCCCCC--CCCCcccccc
Confidence 5668999999998655 3 579999999999999884 2 245899 6987665443
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.77 E-value=7.7e-09 Score=68.46 Aligned_cols=47 Identities=36% Similarity=0.829 Sum_probs=37.5
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
...|+||++.+..+ +.++|||.||..|+..|+.. ...|| .|+..|..
T Consensus 53 ~~~C~iC~~~~~~~----~~~~CgH~fc~~Ci~~~~~~--------~~~CP--~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEA----VTLNCAHSFCSYCINEWMKR--------KIECP--ICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSE----EEETTSCEEEHHHHHHHTTT--------CSBCT--TTCCBCCC
T ss_pred cCCCcccCcccCCc----eECCCCCCccHHHHHHHHHc--------CCcCC--CCCCcCCC
Confidence 45799999998654 36899999999999998742 24799 69988764
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=1.7e-09 Score=69.79 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=46.9
Q ss_pred CCccccccccccccccccccccC-CcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc-CCCHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKN-LCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP-IVPASLFSKW 101 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~-~l~~~~~~ky 101 (122)
...+.|+||++.+..+ + .+ +|||.||..|+..|+. ..|| .|+..+....+.. ..-.++++.|
T Consensus 20 ~~~~~C~IC~~~~~~p--v--~~~~CgH~fC~~Ci~~~~~----------~~CP--~Cr~~~~~~~~~~n~~l~~l~~~~ 83 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP--V--CLGGCEHIFCSNCVSDCIG----------TGCP--VCYTPAWIQDLKINRQLDSMIQLC 83 (117)
T ss_dssp HHTTSCSSSCSCCSSC--B--CCCSSSCCBCTTTGGGGTT----------TBCS--SSCCBCSCSSCCCCHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCc--c--EeCCCCCHHHHHHHHHHhc----------CCCc--CCCCcCccccccccHHHHHHHHHH
Confidence 4568999999998654 2 55 9999999999998875 6899 6999886554432 2234555555
Q ss_pred HHH
Q 033301 102 CDV 104 (122)
Q Consensus 102 ~~~ 104 (122)
..+
T Consensus 84 ~~~ 86 (117)
T 1jm7_B 84 SKL 86 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.75 E-value=2.1e-09 Score=68.32 Aligned_cols=51 Identities=22% Similarity=0.567 Sum_probs=40.0
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
.....|+||++.+..+ + ++.+|||.||..|+..|+.. ...|| .|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~--------~~~CP--~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--T-TIIECLHSFCKTCIVRYLET--------SKYCP--ICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHTS--------CSBCT--TTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--C-EeCCCCChhhHHHHHHHHHh--------CCcCc--CCCcccccc
Confidence 4568899999998654 3 13599999999999999863 26899 699887753
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=66.02 Aligned_cols=52 Identities=27% Similarity=0.659 Sum_probs=40.6
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++++...+.. ..++|+|.||..|+..|+.. .-.|| .|+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~Fh~~Ci~~wl~~--------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVA-TELPCHHYFHKPCVSIWLQK--------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEE-EEETTTEEEEHHHHHHHHTT--------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcE-EecCCCChHHHHHHHHHHHc--------CCcCc--CcCccCCC
Confidence 3456899999998765555 36889999999999999842 12899 69987764
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=2.4e-09 Score=69.60 Aligned_cols=58 Identities=22% Similarity=0.646 Sum_probs=44.6
Q ss_pred CCcccccccccccccc----ccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 24 GSSFTCEICIEPMAAS----KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~----~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
.+...|+||++.+..+ ... +.++|||.||.+||..|+... ..|| .|+..+....+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~-~~~~CgH~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLI-VSTECGHVFCSQCLRDSLKNA--------NTCP--TCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCE-EEETTCCEEEHHHHHHHHTTC--------SBCT--TTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCe-EecCCCChhhHHHHHHHHHhC--------CCCC--CCCCcCcccccccc
Confidence 5678999999998643 122 378999999999999998632 2899 69998887766443
No 43
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.70 E-value=5.3e-09 Score=76.16 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=53.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc-CCCHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP-IVPASLFSKWC 102 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~-~l~~~~~~ky~ 102 (122)
...+.||||++.+..+ + +...|||.||+.||..|+.. .....||..||+..+...++.. ..-..+.+.+.
T Consensus 179 ~~el~CPIcl~~f~DP--V-ts~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--L-ISRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp BCCSBCTTTSSBCSSE--E-EESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred ceeeECcCccCcccCC--e-eeCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 5567899999999665 3 24699999999999999863 1347899999999888776643 11234555565
Q ss_pred HHHH
Q 033301 103 DVLC 106 (122)
Q Consensus 103 ~~~~ 106 (122)
++..
T Consensus 250 ~r~~ 253 (267)
T 3htk_C 250 MKES 253 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 44
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=3e-09 Score=60.06 Aligned_cols=46 Identities=17% Similarity=0.498 Sum_probs=36.9
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++.+..+ ..++|||.||..|+.. ....|| .|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP--~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCP--ICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCS--SCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCC--cCCcEeec
Confidence 4567899999998654 3789999999999866 356899 69987664
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.68 E-value=1.3e-09 Score=70.00 Aligned_cols=48 Identities=25% Similarity=0.669 Sum_probs=38.5
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.+.|+||++.+..+ +.++|||.||..|+..|+.. ....|| .|+..+..
T Consensus 15 ~~~C~iC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~-------~~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP----VTLPCNHTLCKPCFQSTVEK-------ASLCCP--FCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC----EECTTSCEECHHHHCCCCCT-------TTSBCT--TTCCBCHH
T ss_pred CCCCccCCcccCce----eEcCCCCHHhHHHHHHHHhH-------CcCCCC--CCCcccCc
Confidence 47899999998644 36799999999999988742 236899 69998874
No 46
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.6e-08 Score=60.27 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=34.9
Q ss_pred CCccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++..... +.++|||. ||..|+.. ..+|| .|+..+..
T Consensus 23 ~~~~~C~IC~~~~~~~----~~~pCgH~~~C~~C~~~------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEA------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCB----CCSSSCCCCBCHHHHHH------------CSBCT--TTCCBCCC
T ss_pred CCCCCCCcCCCCCCCE----EEecCCCHHHHHHHhhC------------CCCCc--cCCceecC
Confidence 3456899999997543 37899999 99999842 15899 69988765
No 47
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.7e-09 Score=63.37 Aligned_cols=51 Identities=29% Similarity=0.625 Sum_probs=40.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
.....|+||++.+.. . .++|+|.||..|+..|+. ....|| .|+..+...+.
T Consensus 13 ~~~~~C~IC~~~~~~---~--~~~CgH~fc~~Ci~~~~~--------~~~~CP--~Cr~~~~~~~~ 63 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---L--ILPCAHSFCQKCIDKWSD--------RHRNCP--ICRLQMTGANE 63 (70)
T ss_dssp CCCCCCSSSCCSCCS---E--EETTTEEECHHHHHHSSC--------CCSSCH--HHHHCTTCCCC
T ss_pred CCCCCCeeCCcCccC---c--ccCCCCcccHHHHHHHHH--------CcCcCC--CcCCcccCCCc
Confidence 456799999999854 3 689999999999998875 245899 69887775543
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.63 E-value=2e-08 Score=63.09 Aligned_cols=52 Identities=15% Similarity=0.011 Sum_probs=42.6
Q ss_pred CCccccccccccccccccccccCCcC-CcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCT-HPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~-H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+.++ +.++|| |.||+.||..|+.. ..+|| .|+..+...++
T Consensus 20 p~~~~CpI~~~~m~dP----V~~~cG~htf~r~cI~~~l~~--------~~~cP--~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP----VVLPSSRVTVDRSTIARHLLS--------DQTDP--FNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSE----EECTTTCCEEEHHHHHHHTTT--------SCBCT--TTCSBCCTTTS
T ss_pred cHhcCCcCccccccCC----eECCCCCeEECHHHHHHHHHh--------CCCCC--CCCCCCChhhc
Confidence 4578999999999766 478999 99999999999973 23899 59988886644
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.63 E-value=1.2e-08 Score=64.37 Aligned_cols=52 Identities=12% Similarity=-0.002 Sum_probs=42.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+.++ +.++|||.||+.||..|+.. ..+|| .|+..++..++
T Consensus 27 p~~~~CpI~~~~m~dP----V~~~cGhtf~r~~I~~~l~~--------~~~cP--~~~~~l~~~~L 78 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP----VRLPSGTIMDRSIILRHLLN--------SPTDP--FNRQTLTESML 78 (100)
T ss_dssp STTTBCTTTCSBCSSE----EEETTTEEEEHHHHHHHTTS--------CSBCS--SSCCBCCTTSS
T ss_pred cHhhCCcCccCcccCC----eECCCCCEEchHHHHHHHHc--------CCCCC--CCCCCCChhhc
Confidence 5578999999999766 46789999999999999862 24799 69988886544
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.61 E-value=2e-08 Score=58.39 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=38.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|+||++.+... . ..++|||.||..|+..|+... ..|| .|+..+..
T Consensus 3 ~~~~~C~IC~~~~~~~-~--~~~~C~H~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNY-S--MALPCLHAFCYVCITRWIRQN--------PTCP--LCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSC-E--EETTTTEEESTTHHHHHHHHS--------CSTT--TTCCCCCC
T ss_pred CCCCCCeeCCccccCC-c--EecCCCCeeHHHHHHHHHhCc--------CcCc--CCChhhHh
Confidence 3457899999998543 2 268999999999999998531 3899 69987763
No 51
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.58 E-value=4.6e-08 Score=66.63 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=42.3
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+..+ + .++|||.||..||..|+.... .+|| .|+..|....+
T Consensus 16 ~~~~~C~IC~~~~~~p--v--~~~CgH~fC~~Ci~~~~~~~~-------~~CP--~Cr~~~~~~~~ 68 (170)
T 3hcs_A 16 ESKYECPICLMALREA--V--QTPCGHRFCKACIIKSIRDAG-------HKCP--VDNEILLENQL 68 (170)
T ss_dssp CGGGBCTTTCSBCSSE--E--ECTTSCEEEHHHHHHHHHHHC-------SBCT--TTCCBCCGGGC
T ss_pred CCCCCCCCCChhhcCc--E--ECCCCCHHHHHHHHHHHHhCC-------CCCC--CCccCcchhhh
Confidence 4568999999998655 3 579999999999999997641 2899 59888877654
No 52
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.54 E-value=4.8e-08 Score=66.27 Aligned_cols=49 Identities=31% Similarity=0.805 Sum_probs=38.4
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
...|+||++.+..+ + .+++|||.||..|+..|+.. ....|| .|+..+..
T Consensus 54 ~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~~-------~~~~CP--~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNT--M-TTKECLHRFCADCIITALRS-------GNKECP--TCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSE--E-EETTTCCEEEHHHHHHHHHT-------TCCBCT--TTCCBCCS
T ss_pred CCCCcccChHhhCc--C-EeCCCCChhHHHHHHHHHHh-------CcCCCC--CCCCcCCC
Confidence 45899999998654 3 24599999999999999872 146899 69988753
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.51 E-value=2.6e-08 Score=59.23 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=36.0
Q ss_pred CccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
....|+||++..... +.++|||. ||..|+..+ .+|| .|+..|...
T Consensus 23 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~------------~~CP--~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI----VFVPCGHLVTCKQCAEAV------------DKCP--MCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCCBCCCHHHHTTC------------SBCT--TTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE----EEcCCCChhHHHHhhhcC------------ccCC--CcCcCccCc
Confidence 456899999987543 36899999 999998765 6899 699887653
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.43 E-value=1.3e-07 Score=61.23 Aligned_cols=60 Identities=22% Similarity=0.623 Sum_probs=45.6
Q ss_pred CCCccccccccccccccc---cccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 23 SGSSFTCEICIEPMAASK---KFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~---~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
......|+||++.+.... ...+.++|||.||..|+..|+... ..|| .|+..+....+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--------~~CP--~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--------NTCP--TCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC--------SBCT--TTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC--------CCCC--CCCCcCChhcceee
Confidence 456788999999885421 111368999999999999998642 3899 69999998877653
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=1.5e-07 Score=67.93 Aligned_cols=53 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+..+ +.++|||.||+.||..|+... +. .|| .|+..++...+
T Consensus 206 ~~~~~c~i~~~~~~dP----v~~~~gh~f~~~~i~~~~~~~----~~---~cP--~~~~~~~~~~l 258 (281)
T 2c2l_A 206 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV----GH---FNP--VTRSPLTQEQL 258 (281)
T ss_dssp CSTTBCTTTCSBCSSE----EECSSCCEEETTHHHHHHHHT----CS---SCT--TTCCCCCGGGC
T ss_pred CcccCCcCcCCHhcCC----eECCCCCEECHHHHHHHHHHC----CC---CCc--CCCCCCchhcC
Confidence 4678999999999766 468899999999999999742 22 399 69998886654
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=3e-08 Score=59.98 Aligned_cols=56 Identities=21% Similarity=0.439 Sum_probs=39.8
Q ss_pred CCccccccccccccc-----------cccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAA-----------SKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
.....|+||++++.. .+....++.|+|.|+.+|+..|+... -.|| .|+..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP--~CR~~~~~~~~ 79 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCP--LCQQDWVVQRI 79 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCT--TTCCBCCEEEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCC--CcCCCcchhhc
Confidence 345678888888843 22232345699999999999998642 2899 69988776543
No 57
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.37 E-value=4.8e-07 Score=62.57 Aligned_cols=53 Identities=15% Similarity=0.054 Sum_probs=42.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSC 89 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i 89 (122)
...+.|+||++.+..+ +.++|||.||+.||..|+... | . .|| .|+..++..++
T Consensus 104 p~~f~CPI~~elm~DP----V~~~~Ghtfer~~I~~~l~~~---~-~---tcP--~t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELMREP----CITPSGITYDRKDIEEHLQRV---G-H---FDP--VTRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBCSSE----EECTTSCEEEHHHHHHHHHHT---C-S---BCT--TTCCBCCGGGC
T ss_pred cHhhcccCccccCCCC----eECCCCCEECHHHHHHHHHhC---C-C---CCC--CCcCCCChhhC
Confidence 5668999999999765 467999999999999999752 2 2 699 59988887654
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.37 E-value=5.1e-07 Score=69.08 Aligned_cols=54 Identities=20% Similarity=0.464 Sum_probs=42.1
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE 90 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 90 (122)
.....|+||++..... +.++|||.||..|+..|+.. ....|| .|+..+....+.
T Consensus 330 ~~~~~C~ICle~~~~p----v~lpCGH~FC~~Ci~~wl~~-------~~~~CP--~CR~~i~~~~~i 383 (389)
T 2y1n_A 330 STFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQES-------EGQGCP--FCRCEIKGTEPI 383 (389)
T ss_dssp TSSSBCTTTSSSBCCE----EEETTCCEECHHHHHHHHHH-------TCSBCT--TTCCBCCEEEEC
T ss_pred CCCCCCCccCcCCCCe----EEeCCCChhhHHHHHHHHhc-------CCCCCC--CCCCccCCceeE
Confidence 3447999999998543 37899999999999998863 234899 699988776543
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.24 E-value=4.5e-07 Score=52.24 Aligned_cols=52 Identities=13% Similarity=0.366 Sum_probs=37.7
Q ss_pred CCCccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
......|.||++..... .+ ..++|||. ||.+|...+... + -+|| .|+..|..
T Consensus 4 ~~~~~~C~IC~~~~~~~-~~-~~~pCgH~~~C~~C~~~~~~~-----~---~~CP--iCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDG-NI-IHGRTGHLVTCFHCARRLKKA-----G---ASCP--ICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCE-EE-EETTEEEEEECHHHHHHHHHT-----T---CBCT--TTCCBCCE
T ss_pred CCcCCCCcccCCcCCCe-EE-EecCCCCHhHHHHHHHHHHHh-----C---CcCC--CcCchhhc
Confidence 34567899999987543 22 24599999 999999877642 1 4899 69988753
No 60
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.22 E-value=1.8e-07 Score=56.39 Aligned_cols=45 Identities=27% Similarity=0.646 Sum_probs=35.4
Q ss_pred CccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
....|.||++..... ++++|||. ||..|+..+ ..|| .|+..+...
T Consensus 17 ~~~~C~IC~~~~~~~----v~~pCgH~~~C~~C~~~~------------~~CP--~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINS----TFCPCGHTVCCESCAAQL------------QSCP--VCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCE----EEETTCBCCBCHHHHTTC------------SBCT--TTCCBCCEE
T ss_pred CCCEeEEeCcccCcE----EEECCCCHHHHHHHHHhc------------CcCC--CCCchhhCe
Confidence 346899999987533 37899999 999998754 2999 699887764
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.18 E-value=8.2e-07 Score=51.26 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=37.1
Q ss_pred CCccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|.||++..... .+ ..++|||. ||.+|+..+... ..+|| .|+..|..
T Consensus 6 ~~~~~C~IC~~~~~~~-~~-~~~pCgH~~~C~~C~~~~~~~--------~~~CP--iCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNG-CI-VHGKTGHLMACFTCAKKLKKR--------NKPCP--VCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCE-EE-EETTEEEEEECHHHHHHHHHT--------TCCCT--TTCCCCCE
T ss_pred CCcCCCCcCCCCCCCE-EE-ECCCCCChhhHHHHHHHHHHc--------CCcCC--CcCcchhc
Confidence 4556899999987543 22 12399999 899999987742 23799 69988753
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-06 Score=51.80 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=42.8
Q ss_pred CCccccccccccccccccccccCCcC-----CcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCT-----HPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFS 88 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~ 88 (122)
.....|.||++++...+.+ .++|+ |.|..+|+..|+... ....|| -|+..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~------~~~~Cp--lCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSS------DTRCCE--LCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHH------CCSBCS--SSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhC------CCCCCC--CCCCeeecCc
Confidence 4456899999998655555 57896 999999999999875 145899 6998776543
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=51.12 Aligned_cols=45 Identities=22% Similarity=0.504 Sum_probs=35.5
Q ss_pred CCccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|.||++.... . ++++|||. ||..|+.. ..+|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~--~--v~~pCgH~~~C~~C~~~------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN--W--VLLPCRHTCLCDGCVKY------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC--C--EETTTTBCCSCTTHHHH------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCCCC--E--EEECCCChhhhHHHHhc------------CCCCC--CCCcchhc
Confidence 456789999998743 2 47999999 99999983 14899 69987765
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.10 E-value=1.8e-06 Score=54.85 Aligned_cols=52 Identities=19% Similarity=0.472 Sum_probs=39.0
Q ss_pred CCccccccccccccccc---------------cccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 24 GSSFTCEICIEPMAASK---------------KFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.....|.||++.+...- .. ..++|+|.|+..|+..|+.. .-.|| .|+..+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~-~~~~C~H~FH~~Ci~~Wl~~--------~~~CP--~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTV-AWGVCNHAFHFHCISRWLKT--------RQVCP--LDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCE-EEETTSCEEEHHHHHHHHTT--------CSBCS--SSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceE-eecccCcEECHHHHHHHHHc--------CCcCc--CCCCccee
Confidence 45678999999986431 12 35899999999999999764 24799 69987654
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.81 E-value=3.4e-06 Score=54.51 Aligned_cols=52 Identities=19% Similarity=0.478 Sum_probs=1.3
Q ss_pred CCcccccccccccccc--------------ccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 24 GSSFTCEICIEPMAAS--------------KKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
.....|.||++++... +.....++|+|.|+..|+..|+... -.|| .|+..+.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--------~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--------QVCP--LDNREWE 111 (117)
T ss_dssp CCC-------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--------CcCC--CCCCeee
Confidence 3446899999998542 1111246899999999999998763 2799 6987654
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.75 E-value=5.7e-06 Score=62.46 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=36.2
Q ss_pred CccccccccccccccccccccCCcCCc-chHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHP-FSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
....|+||++..... +.++|||. ||..|+..+ ..|| .|+..|...
T Consensus 294 ~~~~C~IC~~~~~~~----v~lpCgH~~fC~~C~~~~------------~~CP--~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSV----VFIPCGHLVVCQECAPSL------------RKCP--ICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCE----EEETTCCEEECTTTGGGC------------SBCT--TTCCBCCEE
T ss_pred CCCCCCccCCcCCce----EEcCCCChhHhHHHHhcC------------CcCC--CCCCCccCe
Confidence 457999999998544 36899999 999998754 5899 699887643
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.68 E-value=1.8e-05 Score=47.07 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=40.7
Q ss_pred hCCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
+......|.||++.+...... ..|+|.|...|+..|+..+ ..-+|| .|+..+.
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~------~~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSN------AEPRCP--HCNDYWP 63 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTC------SSCCCT--TTCSCCC
T ss_pred ccCCCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhc------CCCCCC--CCcCcCC
Confidence 345567899999999765433 4999999999999999643 125899 6987665
No 68
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.53 E-value=9.5e-07 Score=53.38 Aligned_cols=31 Identities=16% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhhhhcCCCceecCCCC
Q 033301 92 IVPASLFSKWCDVLCEDYVLGFERSYCPNTN 122 (122)
Q Consensus 92 ~l~~~~~~ky~~~~~~~~i~~~~~~~CP~~~ 122 (122)
+|++++++||++++++.+|..++.+|||+||
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~~~~CP~p~ 32 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMGGVLCPRPG 32 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCSSCCCCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCCcEECCCCC
Confidence 6888999999999999999766689999986
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.52 E-value=9.7e-05 Score=42.10 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=40.7
Q ss_pred ccccccccccccccccccccC-CcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccC
Q 033301 26 SFTCEICIEPMAASKKFKNKN-LCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPI 92 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~ 92 (122)
.+.|+|+++.+.++ + .. .+||.|++.||..|+... | +||. .+..|...++..+
T Consensus 3 ~~~CpIs~~~m~dP--V--~~~~sG~~yer~~I~~~l~~~---~-----~cP~--t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVPRRP--V--LSPKSRTIFEKSLLEQYVKDT---G-----NDPI--TNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCCSSE--E--EETTTTEEEEHHHHHHHHHHH---S-----BCTT--TCCBCCGGGCEEC
T ss_pred eEEecCCCCCCCCC--E--EeCCCCcEEcHHHHHHHHHhC---C-----CCcC--CcCCCChhhcEEC
Confidence 47899999999755 3 45 899999999999999852 2 4994 7777877776543
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.47 E-value=7e-05 Score=56.57 Aligned_cols=62 Identities=15% Similarity=0.434 Sum_probs=44.5
Q ss_pred CCcccccccccccccccccc----ccCCcCCcchHHHHHHHHHHHhhcC---CCceecCCCCCCCCCCChh
Q 033301 24 GSSFTCEICIEPMAASKKFK----NKNLCTHPFSQDCIAKYIQVKVQDD---NTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~----~~~~C~H~fC~~C~~~~i~~~i~~~---~~~~i~CP~~~C~~~i~~~ 87 (122)
....+|+||++.+....... ....|+|.|...|+..|+.+.-... +...=.|| -|+..|+..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCcc
Confidence 45679999999986522220 1358999999999999999865321 23445799 699988744
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.59 E-value=0.00099 Score=41.57 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=32.4
Q ss_pred ccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 28 TCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 28 ~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
.|++|--++..-. -+.+|.|.||.+|+..|.... .-.|| .|+..|.
T Consensus 3 fC~~C~~Pi~iyg---RmIPCkHvFCydCa~~~~~~~-------~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYG---RMIPCKHVFCYDCAILHEKKG-------DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEE---EEETTCCEEEHHHHHHHHHTT-------CCBCT--TTCCBCS
T ss_pred ecCccCCCeEEEe---eeccccccHHHHHHHHHHhcc-------CCCCc--CcCCeee
Confidence 5888877764332 379999999999998887643 12677 5776554
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.48 E-value=0.0053 Score=34.61 Aligned_cols=51 Identities=16% Similarity=0.436 Sum_probs=37.0
Q ss_pred CCCccccccccccccccccccccCCcC--C---cchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCC
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCT--H---PFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLD 85 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~--H---~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~ 85 (122)
......|.||+++.. +.+ .++|. | .|..+|+..|+..+- ...|| -|+..+.
T Consensus 3 ~~~~~~CrIC~~~~~--~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~------~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEELG--NER--FRACGCTGELENVHRSCLSTWLTISR------NTACQ--ICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEECS--CCC--CCSCCCSSGGGSCCHHHHHHHHHHHT------CSBCT--TTCCBCC
T ss_pred CCCCCEeEEeecCCC--Cce--ecCcCCCCchhhhHHHHHHHHHHhCC------CCccC--CCCCeee
Confidence 345678999999853 233 46755 4 899999999998652 36899 5987654
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.94 E-value=0.0038 Score=38.39 Aligned_cols=33 Identities=15% Similarity=0.435 Sum_probs=24.1
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
...|+||.+++...... .-+.|+|.||..|+..
T Consensus 3 e~~C~~C~~~~~~~av~-~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVK-TCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCE-EETTTTEEECHHHHHH
T ss_pred CCCCcCCCCCCCCCceE-ECCcCChHHhHHHCHH
Confidence 46899999763222111 1399999999999997
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.76 E-value=0.017 Score=41.25 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=41.0
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChh
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPF 87 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~ 87 (122)
......|.||.+-+..+... ..|+|.|...|+..|+.. ....+|| .|+...+..
T Consensus 177 ~~~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~------~~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 177 PDAVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQS------NAEPRCP--HCNDYWPHE 230 (238)
T ss_dssp TTTCCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTT------CSSCBCT--TTCCBCCSC
T ss_pred CCCCCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHh------CCCCCCC--CCCCCCCCC
Confidence 34678999999999765333 349999999999999854 2356899 698765544
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.76 E-value=0.052 Score=32.46 Aligned_cols=51 Identities=25% Similarity=0.620 Sum_probs=39.1
Q ss_pred CCccccccccccccccccccccCCc----CCcchHHHHHHHHHHHhhcCCCceecCCC-CCCC
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLC----THPFSQDCIAKYIQVKVQDDNTAKIECPG-LECR 81 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C----~H~fC~~C~~~~i~~~i~~~~~~~i~CP~-~~C~ 81 (122)
.....|.+|-+.+.+.. ...| .|.||.-|-+.+|..+. ....+-||. ..|.
T Consensus 13 ~a~l~CtlC~erLEdtH----FVQCPsv~~HkFCFpCsr~sIk~q~---~~~EvyCPSG~kCp 68 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH----FVQCPSVPSHKFCFPCSRESIKAQG---ATGEVYCPSGEKCP 68 (93)
T ss_dssp CCSCCCSSSCSCCSSTT----SEECSSCSSCEECHHHHHHHHHHHH---SSSCCCCTTSSCCB
T ss_pred CCeeEeecchhhhccCc----eeeCCCccCCeeeccccHHHHHhcC---CCCcEECCCCCccc
Confidence 56788999999985442 3445 69999999999999874 457888995 3565
No 76
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=91.27 E-value=0.0025 Score=38.56 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHhhhhcCCC-ceecC
Q 033301 94 PASLFSKWCDVLCEDYVLGFE-RSYCP 119 (122)
Q Consensus 94 ~~~~~~ky~~~~~~~~i~~~~-~~~CP 119 (122)
+++++++|++++.+.+|..++ .+|||
T Consensus 3 s~~~~e~y~~~l~e~~v~~~~~~~wCP 29 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVLMRDPKFLWCA 29 (86)
T ss_dssp CCCCCCSSSSCCCCSCCCSCCCEECCS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEeECc
Confidence 456788999999999996554 58999
No 77
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=89.92 E-value=0.078 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=25.1
Q ss_pred CccccccccccccccccccccCCc-CCcchHHHHHHHH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLC-THPFSQDCIAKYI 61 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~C~~~~i 61 (122)
...-|.||.++.. ++ -++| +-.||..||+..=
T Consensus 7 e~pWC~ICneDAt----lr-C~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNEDAT----LR-CAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSCCC----EE-ETTTTSEEECSSHHHHHT
T ss_pred CCCeeEEeCCCCe----EE-ecCCCCceehHHHHHHHc
Confidence 4457999999963 32 6889 8899999999754
No 78
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=84.85 E-value=0.64 Score=28.73 Aligned_cols=16 Identities=13% Similarity=0.648 Sum_probs=14.7
Q ss_pred chHHHHHHHHHHHhhc
Q 033301 52 FSQDCIAKYIQVKVQD 67 (122)
Q Consensus 52 fC~~C~~~~i~~~i~~ 67 (122)
||++|+..|+....++
T Consensus 43 FCRNCLskWy~~aA~e 58 (105)
T 2o35_A 43 FCRNCLSNWYREAAEA 58 (105)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998875
No 79
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=83.12 E-value=0.59 Score=28.86 Aligned_cols=16 Identities=25% Similarity=0.773 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHhhc
Q 033301 52 FSQDCIAKYIQVKVQD 67 (122)
Q Consensus 52 fC~~C~~~~i~~~i~~ 67 (122)
||++|+..|+....++
T Consensus 42 FCRNCLskWy~~aA~~ 57 (104)
T 3fyb_A 42 FCRNCLAKWLMEAATE 57 (104)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988765
No 80
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=80.59 E-value=0.59 Score=28.67 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCcchHHHHHHh--hCCCccccccccccccccccccccCCc-CCcchHHHHHHHHHHHhhcCCCceecCCC
Q 033301 1 MGNTLQTPKENLAKEEEEEEE--SSGSSFTCEICIEPMAASKKFKNKNLC-THPFSQDCIAKYIQVKVQDDNTAKIECPG 77 (122)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~C~IC~~~~~~~~~~~~~~~C-~H~fC~~C~~~~i~~~i~~~~~~~i~CP~ 77 (122)
||+.+.+++.......+.-.. .--....|..|+-.... +..| .|++|..|+.-.+.. .=+||
T Consensus 1 MG~~~Sk~~~~~~~~ra~~~~d~s~~G~~nCKsCWf~~k~------LV~C~dHYLCl~CLtlmL~~--------SdrCp- 65 (99)
T 2ko5_A 1 MGNKQAKAPESKDSPRASLIPDATHLGPQFCKSCWFENKG------LVECNNHYLCLNCLTLLLSV--------SNRCP- 65 (99)
T ss_dssp CCCSSSSCCCCCCSCCCSCSSSCCCSCCCCCCSSCSCCSS------EEECSSCEEEHHHHHHTCSS--------SSEET-
T ss_pred CCCcccCCCCCCCCCcceecCCccccCcccChhhccccCC------eeeecchhhHHHHHHHHHhh--------ccCCc-
Confidence 898777765433222111100 11344689999987642 3444 699999999765543 33798
Q ss_pred CCCCCCCChh
Q 033301 78 LECRHDLDPF 87 (122)
Q Consensus 78 ~~C~~~i~~~ 87 (122)
-|+..|+-.
T Consensus 66 -IC~~pLPtk 74 (99)
T 2ko5_A 66 -ICKMPLPTK 74 (99)
T ss_dssp -TTTEECCCC
T ss_pred -ccCCcCCcc
Confidence 598777654
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=74.21 E-value=11 Score=22.73 Aligned_cols=53 Identities=23% Similarity=0.570 Sum_probs=35.7
Q ss_pred CCCccccccccccccc---cccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCC
Q 033301 23 SGSSFTCEICIEPMAA---SKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDL 84 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~---~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i 84 (122)
......|.||-+++-. .+.|..--.|+-..|+.|+. ...++|+. .|| .|+...
T Consensus 13 ~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----YErkeG~q---~Cp--qCktrY 68 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE----YERREGTQ---NCP--QCKTRY 68 (93)
T ss_dssp CCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----HHHHTSCS---SCT--TTCCCC
T ss_pred ccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHH----HHHhccCc---ccc--ccCCcc
Confidence 3455799999999743 23443455688899999975 34445544 788 587654
No 82
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=72.29 E-value=1.7 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=23.2
Q ss_pred cccccccccccccccccccCCcCCcchHHHH
Q 033301 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCI 57 (122)
Q Consensus 27 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~ 57 (122)
..|--|...+.....| .-..|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y-~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVY-VCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEE-CCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccE-ECCccCcCcccchh
Confidence 4588888888654445 37899999999993
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=65.83 E-value=1.2 Score=22.04 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=13.0
Q ss_pred CCccccccccccccccc
Q 033301 24 GSSFTCEICIEPMAASK 40 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~ 40 (122)
...|.||||+.++...+
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 44689999999986553
No 84
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=62.74 E-value=4 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=26.2
Q ss_pred hhCCCccccccccccccccccccccC--CcCCcchHHHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKN--LCTHPFSQDCIAKYIQ 62 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~C~~~~i~ 62 (122)
++......|.||.+.- +.+ .-- .|...||.+||...+-
T Consensus 74 DeDG~~~yC~wC~~Gg---~l~-~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 74 DDDGYQSYCTICCGGR---EVL-MCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTSSBSSCTTTSCCS---EEE-ECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCCCcceeeEecCCC---eEE-eeCCCCCCCchhHHHHHHhcC
Confidence 3456677899998754 222 122 5889999999987664
No 85
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.15 E-value=3.4 Score=24.27 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
.....|.+|...+.....-..--.||+.||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 455689999998854321112567999999998654
No 86
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.98 E-value=3.4 Score=24.16 Aligned_cols=36 Identities=19% Similarity=0.502 Sum_probs=24.7
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
.....|.+|...+.....-..--.||..||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 445689999998853321113567999999999754
No 87
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=60.69 E-value=3 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=24.5
Q ss_pred CccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
....|.+|...+.....-..--.||+.||..|....
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 345799999887543211135689999999996543
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=60.32 E-value=3 Score=26.52 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=23.9
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
...|.+|...+.....-..--.||+.||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45799999887533110125579999999996543
No 89
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.57 E-value=3.6 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=23.5
Q ss_pred CCccccccccccccc--cccccccCCcCCcchHHHH
Q 033301 24 GSSFTCEICIEPMAA--SKKFKNKNLCTHPFSQDCI 57 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~--~~~~~~~~~C~H~fC~~C~ 57 (122)
.....|.+|..++.. +... .-..|.|.+|..|=
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~-~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASV-VCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEE-ECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCC-CCCCCCcccccccC
Confidence 566789999999831 1112 36789999999873
No 90
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=56.84 E-value=4.1 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=22.1
Q ss_pred cccccccccccccccccccCCcCCcchHHHHH
Q 033301 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCIA 58 (122)
Q Consensus 27 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~ 58 (122)
..|.+|...+.....-..--.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999998875321111245799999999964
No 91
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=54.29 E-value=7 Score=29.77 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=26.3
Q ss_pred hCCCccccccccccccccccccccC--CcCCcchHHHHHHHH
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKN--LCTHPFSQDCIAKYI 61 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~--~C~H~fC~~C~~~~i 61 (122)
+......|.+|.+.-. .+ .-- .|...||.+|+...+
T Consensus 89 ~DG~~~yCr~C~~Gg~---l~-~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 89 DDGYQSYCSICCSGET---LL-ICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSSSBCSCTTTCCCSS---CE-ECCSTTCCCEECHHHHHHHT
T ss_pred CCCCcccceEcCCCCe---EE-EeCCCCCCcchHHHHHHHhc
Confidence 4556678999987642 22 233 788999999999877
No 92
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=54.11 E-value=7.8 Score=21.68 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCccccccccccccccccccccC-CcCCcchHHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKN-LCTHPFSQDCIA 58 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~C~~ 58 (122)
+.+...|++|..++.+...+..-. .|.-.|...|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 455678999999986554332234 688888999975
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=53.99 E-value=1.8 Score=29.54 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=43.7
Q ss_pred ccccccccccccccc---ccccCCcCCcchHHHHHHHHH--HHhhc-CCCceecCCCCCCCCCCChhhcccCCCHHHHHH
Q 033301 27 FTCEICIEPMAASKK---FKNKNLCTHPFSQDCIAKYIQ--VKVQD-DNTAKIECPGLECRHDLDPFSCEPIVPASLFSK 100 (122)
Q Consensus 27 ~~C~IC~~~~~~~~~---~~~~~~C~H~fC~~C~~~~i~--~~i~~-~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~k 100 (122)
..|+||...+...+. +..-..|...|...|..-.-. ..+.+ .......|| .|...-+.. ++..|..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 469999988876542 223556888888888742211 12211 011367899 698765543 555555665555
Q ss_pred HHHHH
Q 033301 101 WCDVL 105 (122)
Q Consensus 101 y~~~~ 105 (122)
+++.+
T Consensus 80 l~~vl 84 (183)
T 3lqh_A 80 LKQVL 84 (183)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 94
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.50 E-value=5.3 Score=23.40 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIA 58 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~ 58 (122)
.....|.+|...+.....-..--.||..||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 34457999988875331101246799999999854
No 95
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=51.94 E-value=5 Score=23.87 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.7
Q ss_pred CccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
....|.+|...+.....-..--.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34579999888753311012467999999988653
No 96
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=50.91 E-value=48 Score=21.48 Aligned_cols=52 Identities=21% Similarity=0.541 Sum_probs=34.3
Q ss_pred hCCCccccccccccccccccccccCCcCCcchHHHHHHHHH----HHh--hcCCCceecCCCCCCCC
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQ----VKV--QDDNTAKIECPGLECRH 82 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~----~~i--~~~~~~~i~CP~~~C~~ 82 (122)
.......|.+|.+-- +.+ .--.|...||..|+..-+. ..| .+| +-.|| .|..
T Consensus 59 ~Dg~~d~C~vC~~GG---~Ll-cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~--~C~~ 116 (142)
T 2lbm_A 59 SDGMDEQCRWCAEGG---NLI-CCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCY--ICHP 116 (142)
T ss_dssp TTSCBCSCSSSCCCS---SEE-ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCT--TTCC
T ss_pred CCCCCCeecccCCCC---cEE-eCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEee--cccC
Confidence 345667899998764 233 3568889999999997663 233 233 44787 4764
No 97
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=49.35 E-value=7.5 Score=25.02 Aligned_cols=38 Identities=21% Similarity=0.536 Sum_probs=24.7
Q ss_pred ecCCCCCCCC---CCChhhcccCCCHHHHHHHHHHHHhhhhcCCCceecCCCC
Q 033301 73 IECPGLECRH---DLDPFSCEPIVPASLFSKWCDVLCEDYVLGFERSYCPNTN 122 (122)
Q Consensus 73 i~CP~~~C~~---~i~~~~i~~~l~~~~~~ky~~~~~~~~i~~~~~~~CP~~~ 122 (122)
+.|| .|.. .+....++.+|.++.. . +...+..+|++|+
T Consensus 2 ~~CP--~Cg~~G~~V~~~Tvk~ll~~~~~---------~-~~~~~y~~C~~~~ 42 (130)
T 2hu9_A 2 MRCP--ECSTEGWRVLPLTVGAHVKEGLW---------S-KIKGDFYFCSLES 42 (130)
T ss_dssp CBCT--TTCCBCEEECHHHHHHHBCGGGG---------G-GCCSCEEECCCTT
T ss_pred CcCC--CCCCcCcCccHHHHHHHhhHHHh---------c-cCCCCEEeECCCC
Confidence 4688 5875 5667777777766542 2 3344568899885
No 98
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=48.26 E-value=6.2 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=23.5
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYI 61 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i 61 (122)
...|..|...+.....-..--.||..||..|....+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 357999988875432111357899999999966544
No 99
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.24 E-value=4.1 Score=19.14 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=13.7
Q ss_pred Cccccccccccccccccc
Q 033301 25 SSFTCEICIEPMAASKKF 42 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~ 42 (122)
..+.|+||....++.+.+
T Consensus 2 ~k~~CpvCk~q~Pd~kt~ 19 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDTL 19 (28)
T ss_dssp CCEECTTSSCEESSHHHH
T ss_pred CcccCccccccCcChHHH
Confidence 467899999988766543
No 100
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=43.86 E-value=10 Score=21.46 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=23.9
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIA 58 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~ 58 (122)
......|.||........++ .--.|...|...|+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi-~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMI-GCDDCDDWYHWPCVG 49 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEE-ECSSSSSEEEHHHHT
T ss_pred CCCCcCCCCCCCCCCCCCEE-EcCCCCcccccccCC
Confidence 34556799998876543343 355688788888874
No 101
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.31 E-value=6.3 Score=27.21 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=23.6
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
...|.+|...+.....-..--.||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 46899998887533110124679999999986543
No 102
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=42.99 E-value=11 Score=18.07 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=9.9
Q ss_pred eecCCCCCCCCCC
Q 033301 72 KIECPGLECRHDL 84 (122)
Q Consensus 72 ~i~CP~~~C~~~i 84 (122)
.++||.++|...-
T Consensus 1 ~~~CPtpGC~g~G 13 (31)
T 2jx1_A 1 DLKCPTPGCDGSG 13 (31)
T ss_dssp CCSCSCTTCCSSC
T ss_pred CCcCCCCCccccc
Confidence 3689999998643
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.85 E-value=7.1 Score=27.17 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=24.2
Q ss_pred ccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
...|.+|...+.....-..--.||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34899999887643211135689999999996643
No 104
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.11 E-value=8.9 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=23.6
Q ss_pred Ccccccccccccccc-ccccccCCcCCcchHHHH
Q 033301 25 SSFTCEICIEPMAAS-KKFKNKNLCTHPFSQDCI 57 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~fC~~C~ 57 (122)
+...|.+|..++... ..-.+-..|.|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 567999999986321 111146789999999885
No 105
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.70 E-value=20 Score=19.40 Aligned_cols=38 Identities=18% Similarity=0.557 Sum_probs=26.1
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYI 61 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i 61 (122)
.+-..-+.|..|...+... .| ...=+..||..|+...+
T Consensus 26 ~~H~~CF~C~~C~~~L~~~-~~--~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 26 PWHADCFVCVTCSKKLAGQ-RF--TAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp EECTTTTBCTTTCCBCTTS-CE--EECSSCEEEHHHHHHHH
T ss_pred ccccCcCEECCCCCCCCCC-cc--EeECCEEECHHHhHHHh
Confidence 4456678899999888643 34 22337889999986543
No 106
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.71 E-value=22 Score=19.38 Aligned_cols=39 Identities=13% Similarity=0.403 Sum_probs=27.2
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQ 62 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~ 62 (122)
.+-..-+.|..|...+... .| ...=+..||..|+...+.
T Consensus 28 ~~H~~CF~C~~C~~~L~~~-~~--~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 28 VFHVGCFVCSTCRAQLRGQ-HF--YAVERRAYCEGCYVATLE 66 (72)
T ss_dssp EECTTTCBCSSSCCBCTTS-CE--EESSSCEEEHHHHHHHHH
T ss_pred eEcccCCcccccCCcCCcC-cC--EeeCCeEECHHHHHHHHc
Confidence 4456668899999888533 34 233478999999976653
No 107
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=40.40 E-value=15 Score=27.73 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=47.1
Q ss_pred cccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccCCCHHHHHHHHHHHH
Q 033301 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIVPASLFSKWCDVLC 106 (122)
Q Consensus 27 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~ky~~~~~ 106 (122)
..|||=+..+..+-. ...|.|.-|.| +..|+...-+. ..-+||. |...+..+++. ++.-+.+.....--
T Consensus 216 L~CPlS~~ri~~P~R---g~~C~HlqCFD-l~sfL~~~~~~---~~W~CPi--C~k~~~~~dL~--ID~~~~~IL~~~~~ 284 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCR---AVTCTHLQCFD-AALYLQMNEKK---PTWICPV--CDKKAAYESLI--LDGLFMEILNDCSD 284 (360)
T ss_dssp SBCTTTCSBCSSEEE---ETTCCCCCCEE-HHHHHHHHHHS---CCCBCTT--TCSBCCGGGEE--EBHHHHHHHTTCSS
T ss_pred eeCCCccceeccCCc---CCCCCCCccCC-HHHHHHHHhhC---CCeECCC--CCcccCHHHeE--EcHHHHHHHHhCCC
Confidence 458887777754422 57899997775 34555544333 4569995 99999887764 34433333222110
Q ss_pred hhhh-cCCCceecCC
Q 033301 107 EDYV-LGFERSYCPN 120 (122)
Q Consensus 107 ~~~i-~~~~~~~CP~ 120 (122)
-..| -..+..|+|.
T Consensus 285 v~~I~v~~DGsW~p~ 299 (360)
T 4fo9_A 285 VDEIKFQEDGSWCPM 299 (360)
T ss_dssp CCEEEECC-CCEEC-
T ss_pred CCEEEECCCCceecC
Confidence 0111 2456688874
No 108
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.69 E-value=18 Score=19.69 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=27.6
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQ 62 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~ 62 (122)
.+-..-+.|..|-..+... .| ...=+..||..|+...+.
T Consensus 26 ~~H~~CF~C~~C~~~L~~~-~f--~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 26 SWHPECFRCDLCQEVLADI-GF--VKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp EECTTTSBCSSSCCBCSSS-CC--EEETTEEECHHHHHHHHC
T ss_pred cccccCCEeCCCCCcCCCC-cc--EeECCeEECHHHhhhhcC
Confidence 4456668899998888654 34 344578899999876543
No 109
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.48 E-value=9.3 Score=21.32 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=25.9
Q ss_pred HhhCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 20 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
+.+-..-+.|..|-..+.....| ...=+..||..|....
T Consensus 25 ~~wH~~CF~C~~C~~~L~~~~~f--~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 25 KHYHPSCALCVRCGQMFAEGEEM--YLQGSSIWHPACRQAA 63 (73)
T ss_dssp CCBCTTTSCCSSSCCCCCSSCCC--EEETTEEECTTHHHHT
T ss_pred CCCCCCcCEeCCCCCCCCCCCee--EeeCCEEEChHHChHh
Confidence 34556668899998888644444 2334678999997543
No 110
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=37.20 E-value=9.9 Score=23.28 Aligned_cols=82 Identities=11% Similarity=0.207 Sum_probs=45.6
Q ss_pred CccccccccccccccccccccC-CcCCcchHHHHHHHH--HHHhhcCCCceecCCCCCCCCCCCh------hhcccCCCH
Q 033301 25 SSFTCEICIEPMAASKKFKNKN-LCTHPFSQDCIAKYI--QVKVQDDNTAKIECPGLECRHDLDP------FSCEPIVPA 95 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fC~~C~~~~i--~~~i~~~~~~~i~CP~~~C~~~i~~------~~i~~~l~~ 95 (122)
+...|+||...+.+...+..-- .|...|..+|+.--- ...|.........|| .|...... .......+.
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp--~C~~~~~~~~~~~~sk~~yvfst 79 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACD--LCLKTKEGSGSGSGSQFVYVFTT 79 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH--HHHHTTTTC--------CEEECH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECc--cccCcCCCCCCCCCcccceEecc
Confidence 4578999999975543332233 688888888875221 122211123677898 68643221 222334566
Q ss_pred HHHHHHHHHHHhh
Q 033301 96 SLFSKWCDVLCED 108 (122)
Q Consensus 96 ~~~~ky~~~~~~~ 108 (122)
.+.++..++....
T Consensus 80 ~lan~aAea~~~g 92 (105)
T 2xb1_A 80 HLANTAAEAVLQG 92 (105)
T ss_dssp HHHHHHHHHHHTT
T ss_pred chhhhHHHHHhcc
Confidence 7777776655544
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=36.70 E-value=27 Score=22.34 Aligned_cols=36 Identities=25% Similarity=0.587 Sum_probs=26.3
Q ss_pred hCCCccccccccccccccccccccCCcCCcchHHHHHHHH
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYI 61 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i 61 (122)
+......|.||.+-- +.+ .--.|-..||..|+...+
T Consensus 53 ~Dg~~~~C~vC~dGG---~Ll-cCd~Cpr~Fc~~Cl~~~l 88 (129)
T 3ql9_A 53 SDGMDEQCRWCAEGG---NLI-CCDFCHNAFCKKCILRNL 88 (129)
T ss_dssp TTSCBSSCTTTCCCS---EEE-ECSSSSCEEEHHHHHHHT
T ss_pred CCCCCCcCeecCCCC---eeE-ecCCCchhhhHHHhCCCc
Confidence 345666799998763 233 356889999999999764
No 112
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=35.71 E-value=22 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.5
Q ss_pred CcchHHHHHHHHHH
Q 033301 50 HPFSQDCIAKYIQV 63 (122)
Q Consensus 50 H~fC~~C~~~~i~~ 63 (122)
.-||..|++.+.++
T Consensus 35 ~n~CSkCyre~~en 48 (49)
T 3oj3_I 35 KGFCTLCFIEYREN 48 (49)
T ss_dssp TTBCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHc
Confidence 45999999998874
No 113
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=35.60 E-value=20 Score=20.53 Aligned_cols=37 Identities=16% Similarity=0.426 Sum_probs=25.9
Q ss_pred CCccccccccccccccccccccCCcCCcchHHHHHH-HH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK-YI 61 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~-~i 61 (122)
.....|.+|-+..... ....-+.|.-.||..|+.. |-
T Consensus 28 ~~~v~C~~C~~~~~~~-A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQD-AVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp SCCCBCSSCCSSSCCB-CCEEETTTTEEECHHHHHHHSC
T ss_pred CCCccCCcCCCCCCCC-CeeEccCccchhhhhhhHhhcC
Confidence 3457899998653112 2224799999999999985 54
No 114
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=35.39 E-value=24 Score=16.83 Aligned_cols=29 Identities=10% Similarity=0.376 Sum_probs=20.1
Q ss_pred hCCCccccccccccccccccccccCCcCCcchH
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQ 54 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~ 54 (122)
+..+-.+|.+|+....+.+ ...|-.+||.
T Consensus 5 frrpfhecalcysitdpge----rqrcidmycs 33 (36)
T 2jyp_A 5 FRRPFHECALCYSITDPGE----RQRCIDMYCS 33 (36)
T ss_dssp STTTTTCCSSSTTTTTTTC----TTCGGGTTTT
T ss_pred ccCccchheeEEeecCcch----hhhhhhheec
Confidence 3456678999998876653 4567777764
No 115
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=34.42 E-value=17 Score=19.65 Aligned_cols=37 Identities=11% Similarity=0.254 Sum_probs=24.5
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
..-..-+.|..|-..+... .|. ..+ +..||..|+...
T Consensus 34 ~~H~~CF~C~~C~~~L~~~-~~~-~~~-g~~yC~~~y~~l 70 (72)
T 3f6q_B 34 LYHEQCFVCAQCFQQFPEG-LFY-EFE-GRKYCEHDFQML 70 (72)
T ss_dssp EEETTTSSCTTTCCCCGGG-CCE-EET-TEEECHHHHHHH
T ss_pred eeCcCCCcccCCCCCCCCC-CeE-eEC-CeEeCHHHHHHh
Confidence 3445667888888887655 342 233 788999887653
No 116
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.27 E-value=29 Score=19.37 Aligned_cols=42 Identities=10% Similarity=0.235 Sum_probs=28.2
Q ss_pred HhhCCCccccccccccccccccccccCCcCCcchHHHHHHHHH
Q 033301 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQ 62 (122)
Q Consensus 20 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~ 62 (122)
+.+-..-+.|..|...+...+.|. +..=+..||..|+...+.
T Consensus 35 ~~~H~~CF~C~~C~~~L~~g~~f~-~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 35 FKYHPECFACMSCKVIIEDGDAYA-LVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CCBCTTSCBCTTTCCBCCTTSCEE-ECSSSCEEEHHHHHHHHC
T ss_pred ceeccccCCccCCCCccCCCCcEE-EeeCCEEECHHHHHHHhc
Confidence 345566788999988886444441 224478899999876554
No 117
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=34.03 E-value=8.6 Score=28.87 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=0.0
Q ss_pred CCccccccccccccccc-cccccCCcCCcchHHHHHHHHHH
Q 033301 24 GSSFTCEICIEPMAASK-KFKNKNLCTHPFSQDCIAKYIQV 63 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~-~~~~~~~C~H~fC~~C~~~~i~~ 63 (122)
.....|.+|...+.... .. .--.||+.||..|....+..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h-~Cr~Cg~~~C~~Cs~~~~~~ 412 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRH-HCHACGKIVCRNCSRNKYPL 412 (434)
T ss_dssp -----------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhh-hcccCcCEeehhhCCCeeeC
Confidence 33567999998875331 12 35689999999999866543
No 118
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=33.69 E-value=13 Score=20.09 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCccccccccccccccccccccCCcCCcch-HHHHHH
Q 033301 24 GSSFTCEICIEPMAASKKFKNKNLCTHPFS-QDCIAK 59 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC-~~C~~~ 59 (122)
..-+.|..|-..+... .|. . .=+..|| .+|...
T Consensus 30 ~~CF~C~~C~~~L~~~-~f~-~-~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQ-KFM-P-VEGMVFCSVECKKR 63 (65)
T ss_dssp TTTSBCTTTCCBCTTS-CCE-E-ETTEEESSHHHHHT
T ss_pred CCCEECCCCCCcCCCC-ceE-E-ECCEEecCHHHhhh
Confidence 5668899998888644 342 2 3378899 899764
No 119
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=32.52 E-value=25 Score=19.39 Aligned_cols=34 Identities=15% Similarity=0.465 Sum_probs=23.9
Q ss_pred ccccccccccccccccccccCCcCCcchH-HHHHHH
Q 033301 26 SFTCEICIEPMAASKKFKNKNLCTHPFSQ-DCIAKY 60 (122)
Q Consensus 26 ~~~C~IC~~~~~~~~~~~~~~~C~H~fC~-~C~~~~ 60 (122)
...|.||.........| .-..|+-.||. .|.+.|
T Consensus 11 ~~~C~vC~~~~~~~akY-~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARY-TCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECE-ECTTTCCEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccc-cCcCCCCCccChHHHHHH
Confidence 35799998632112245 37899999997 898876
No 120
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=32.18 E-value=23 Score=21.80 Aligned_cols=44 Identities=9% Similarity=0.271 Sum_probs=31.2
Q ss_pred HhhCCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHh
Q 033301 20 EESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKV 65 (122)
Q Consensus 20 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i 65 (122)
+.+-..-|.|..|-..+...+.|. ..=+..||..|+...+..+-
T Consensus 30 ~~~H~~CF~C~~C~~~L~~g~~f~--~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 30 KVYHLECFKCAACQKHFSVGDRYL--LINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp CCCCTTTCBCTTTCCBCCTTCEEE--ECSSSEEEGGGHHHHHHHHT
T ss_pred cccccccCccccCCCCCCCCCcEE--eeCCEEEcHHHhHHHhcccc
Confidence 345567789999998885444452 33488999999988776554
No 121
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.39 E-value=29 Score=19.91 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=21.4
Q ss_pred hCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 22 SSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
+-..-+.|..|-..+... .| ...=+..||..|+...
T Consensus 47 ~H~~CF~C~~C~~~L~~~-~f--~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 47 WHPEEFNCAHCKNTMAYI-GF--VEEKGALYCELCYEKF 82 (90)
T ss_dssp ECTTTCBCSSSCCBCSSS-CB--EESSSCEECHHHHHHH
T ss_pred ccccCCccCCCCCCCCCC-Ee--EeECCEEECHHHHHHH
Confidence 334456677777666533 33 2334677888887654
No 122
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.33 E-value=15 Score=20.05 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=20.0
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCI 57 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~ 57 (122)
+.....|+||.........+..-..|...|...|+
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cv 37 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCV 37 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCcccc
Confidence 34556799998877433222123456555555554
No 123
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.59 E-value=34 Score=17.55 Aligned_cols=31 Identities=19% Similarity=0.478 Sum_probs=21.0
Q ss_pred ccccccccccccccccccCCcCCcchHHHHHH
Q 033301 28 TCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 28 ~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
.|.||...-...+.+ .-..|...|...|+.-
T Consensus 2 ~C~vC~~~~~~~~ll-~Cd~C~~~~H~~Cl~p 32 (51)
T 1f62_A 2 RCKVCRKKGEDDKLI-LCDECNKAFHLFCLRP 32 (51)
T ss_dssp CCTTTCCSSCCSCCE-ECTTTCCEECHHHHCT
T ss_pred CCCCCCCCCCCCCEE-ECCCCChhhCcccCCC
Confidence 488898765434344 2567888888888853
No 124
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.49 E-value=29 Score=21.45 Aligned_cols=23 Identities=22% Similarity=0.618 Sum_probs=16.7
Q ss_pred cCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCC
Q 033301 45 KNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRH 82 (122)
Q Consensus 45 ~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~ 82 (122)
-..||+.|. ++-..+.+|| .|+.
T Consensus 70 C~~CG~~F~-------------~~~~kPsrCP--~CkS 92 (105)
T 2gmg_A 70 CRKCGFVFK-------------AEINIPSRCP--KCKS 92 (105)
T ss_dssp BTTTCCBCC-------------CCSSCCSSCS--SSCC
T ss_pred hhhCcCeec-------------ccCCCCCCCc--CCCC
Confidence 578999981 2345689999 6885
No 125
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.71 E-value=36 Score=18.27 Aligned_cols=37 Identities=14% Similarity=0.461 Sum_probs=24.9
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
.+-..-+.|..|...+... .| ...=+..||..|+...
T Consensus 26 ~~H~~CF~C~~C~~~L~~~-~~--~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 26 PWHKECFVCTACRKQLSGQ-RF--TARDDFAYCLNCFCDL 62 (70)
T ss_dssp EEETTTSBCSSSCCBCTTS-CC--EESSSSEECHHHHHHH
T ss_pred ccCCCCCccCCCCCcCCcC-ce--EeeCCeEECHHHHHHH
Confidence 3445668899998888543 44 2334678999998643
No 126
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.54 E-value=21 Score=19.84 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=11.3
Q ss_pred CCCccccccccccc
Q 033301 23 SGSSFTCEICIEPM 36 (122)
Q Consensus 23 ~~~~~~C~IC~~~~ 36 (122)
+.+...|.||....
T Consensus 6 ~~d~~~C~iC~KTK 19 (62)
T 2a20_A 6 KGDAPTCGICHKTK 19 (62)
T ss_dssp SSCCCCCSSSSCSC
T ss_pred cCCcchhhhhccce
Confidence 46678999999886
No 127
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.37 E-value=16 Score=21.15 Aligned_cols=27 Identities=19% Similarity=0.456 Sum_probs=18.6
Q ss_pred CccccccccccccccccccccCCcCCcchH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQ 54 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~ 54 (122)
....|..|...+... .| .-.|+..||.
T Consensus 24 ~~nRC~~CrKkvgL~-gf--~CrCg~~FCs 50 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLT-GF--DCRCGNLFCG 50 (74)
T ss_dssp CTTBCSSSCCBCGGG-CE--ECTTSCEECS
T ss_pred cCCcChhhCCccccc-Ce--ecCCCCEech
Confidence 345799998876432 34 3459999996
No 128
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.20 E-value=64 Score=18.23 Aligned_cols=61 Identities=20% Similarity=0.442 Sum_probs=37.2
Q ss_pred CCccccccccccccc-cccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhccc
Q 033301 24 GSSFTCEICIEPMAA-SKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEP 91 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~ 91 (122)
.....| ||...... ..++ .-..|...|...|+.--..... ......|| .|........+++
T Consensus 10 ~~~~~C-~C~~~~d~~~~MI-qCd~C~~WfH~~Cvgl~~~~~~---~~~~~~C~--~C~~~~~~~~~K~ 71 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMI-ECGLCQDWFHGSCVGIEEENAV---DIDIYHCP--DCEAVFGPSIMKN 71 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEE-EBTTTCCEEEHHHHTCCHHHHT---TCSBBCCT--TTTTTSCSCBCCC
T ss_pred CCccEE-EcCCccCCCCceE-EcCCCCCcEEeeecCccccccc---CCCeEECC--CcccccCCCceee
Confidence 445667 88877642 2333 3556888899999864332221 23577898 6987665555543
No 129
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=27.61 E-value=15 Score=24.20 Aligned_cols=76 Identities=20% Similarity=0.409 Sum_probs=40.9
Q ss_pred CCCccccccccccccccc-cccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccCCCHHHHHHH
Q 033301 23 SGSSFTCEICIEPMAASK-KFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIVPASLFSKW 101 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~-~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~ky 101 (122)
......| +|........ ++ .-..|...|...|+.---... + ......|| .|...-.......-|+++.++..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi-~Cd~C~~WfH~~Cv~~~~~~~--~-~~~~~~C~--~C~~~~~~~~~~~~l~~~~~~~l 77 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYI-GCDRCQNWYHGRCVGILQSEA--E-LIDEYVCP--QCQSTEDAMTVLTPLTEKDYEGL 77 (174)
T ss_dssp --CCEET-TTTEECCTTSCEE-ECTTTCCEEEHHHHTCCHHHH--T-TCSSCCCH--HHHHHHHHHTTTSBCCHHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEe-ECCCCCchhChhhcCCchhhc--c-CccCeecC--CCcchhccccccccCCHHHHHHH
Confidence 3456789 9988754322 33 355788889999985221111 1 23466788 57643222223334666555555
Q ss_pred HHHH
Q 033301 102 CDVL 105 (122)
Q Consensus 102 ~~~~ 105 (122)
.+.+
T Consensus 78 ~~il 81 (174)
T 2ri7_A 78 KRVL 81 (174)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=27.61 E-value=60 Score=24.50 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=37.5
Q ss_pred cccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcc
Q 033301 27 FTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCE 90 (122)
Q Consensus 27 ~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~ 90 (122)
..||+=+..+..+-. ...|.|.-|.|- ..|+....+ ....+||. |...+...++.
T Consensus 250 L~CPlS~~ri~~PvR---g~~C~HlQCFDl-~sfL~~~~~---~~~W~CPI--C~k~~~~~dL~ 304 (371)
T 3i2d_A 250 LQCPISYTRMKYPSK---SINCKHLQCFDA-LWFLHSQLQ---IPTWQCPV--CQIDIALENLA 304 (371)
T ss_dssp SBCTTTSSBCSSEEE---ETTCCSSCCEEH-HHHHHHHHH---SCCCBCTT--TCCBCCGGGEE
T ss_pred ecCCCccccccccCc---CCcCCCcceECH-HHHHHHhhc---CCceeCCC--CCcccCHHHee
Confidence 468887777654422 678999977764 455554433 35669995 99988887764
No 131
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.77 E-value=23 Score=21.84 Aligned_cols=39 Identities=10% Similarity=0.293 Sum_probs=24.8
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHHHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQV 63 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~ 63 (122)
-..-+.|..|-..+...+.|. ..+ +..||..|+...+..
T Consensus 91 H~~CF~C~~C~~~L~~g~~f~-~~~-~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 91 HLECFKCAACQKHFCVGDRYL-LIN-SDIVCEQDIYEWTKI 129 (131)
T ss_dssp EGGGCBCTTTCCBCCTTCEEE-EET-TEEEEGGGHHHHHHH
T ss_pred CccCcccCCCCCCCCCCCEEE-EEC-CEEEcHHHHHHHhhc
Confidence 345577888877774444442 333 778888888766554
No 132
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=26.11 E-value=30 Score=19.18 Aligned_cols=40 Identities=18% Similarity=0.507 Sum_probs=29.2
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchH-HHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQ-DCIAKY 60 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~-~C~~~~ 60 (122)
....-...|.-|-.++...+.-+..-..-|.||. .||..|
T Consensus 15 ~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 15 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred CCCccccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 4445678999999998766543347788899986 777665
No 133
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.70 E-value=26 Score=18.72 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=24.7
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
.+-..-+.|..|...+... .| ...=+..||..|+...
T Consensus 26 ~~H~~CF~C~~C~~~L~~~-~~--~~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 26 QWHVEHFVCAKCEKPFLGH-RH--YERKGLAYCETHYNQL 62 (66)
T ss_dssp BEETTTCBCTTTCCBCSSS-CC--EEETTEEECHHHHHHH
T ss_pred ccccCcCEECCCCCCCCCC-ce--EeECCcEECHHHHHHH
Confidence 3445567899998887643 34 2444778999988653
No 134
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=25.24 E-value=85 Score=19.00 Aligned_cols=48 Identities=15% Similarity=0.334 Sum_probs=30.6
Q ss_pred Ccccccccccccc------ccccccccCCcCCcchHHHHH--HHHHHHhhcCCCceecCC
Q 033301 25 SSFTCEICIEPMA------ASKKFKNKNLCTHPFSQDCIA--KYIQVKVQDDNTAKIECP 76 (122)
Q Consensus 25 ~~~~C~IC~~~~~------~~~~~~~~~~C~H~fC~~C~~--~~i~~~i~~~~~~~i~CP 76 (122)
+...|.+|...-. .++.+ .-..|+..|...|+. .-+...+..+++ .||
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll-~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W---~C~ 59 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELI-SCADCGNSGHPSCLKFSPELTVRVKALRW---QCI 59 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCE-ECTTTCCEECHHHHTCCHHHHHHHHTSCC---CCT
T ss_pred cCccccccCCchhhCcCCCchhce-EhhhcCCCCCCchhcCCHHHHHHhhcccc---ccc
Confidence 5668999987631 22333 367799999999995 234445555444 455
No 135
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.83 E-value=72 Score=17.24 Aligned_cols=34 Identities=29% Similarity=0.670 Sum_probs=26.0
Q ss_pred CccccccccccccccccccccCCcCCcchH-HHHHHHHHH
Q 033301 25 SSFTCEICIEPMAASKKFKNKNLCTHPFSQ-DCIAKYIQV 63 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~-~C~~~~i~~ 63 (122)
....|.||.. . . .| .-..|+-.||. .|++.|-..
T Consensus 11 ~~~~C~vC~~-~-~--kY-~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 11 STVVCVICLE-K-P--KY-RCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCCTTTCS-C-C--SE-ECTTTCCEESSHHHHHHHHHH
T ss_pred CCCccCcCcC-C-C--ee-eCCCCCCCeeCHHHHHHHHhh
Confidence 3446999988 2 1 34 37899999997 999998765
No 136
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=24.79 E-value=65 Score=17.90 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=15.4
Q ss_pred CcchHHHHHHHHHHHhhcCCC
Q 033301 50 HPFSQDCIAKYIQVKVQDDNT 70 (122)
Q Consensus 50 H~fC~~C~~~~i~~~i~~~~~ 70 (122)
..+|..||++++..+-..+..
T Consensus 29 ~nlCSkCyr~~~~~~~~~~~~ 49 (62)
T 2kzy_A 29 NGMCSVCYKEHLQRQQNSGRM 49 (62)
T ss_dssp TSCCHHHHHHHHHHHHHHCCC
T ss_pred cCcCHHHHHHHHHhhhccccc
Confidence 459999999998766555433
No 137
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.39 E-value=55 Score=20.18 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=17.8
Q ss_pred CCccccccccccccc-cccccccCCcCCcchHHHHHH
Q 033301 24 GSSFTCEICIEPMAA-SKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 24 ~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fC~~C~~~ 59 (122)
..-+.|..|-..+.. ...| ...=+..||..|+..
T Consensus 86 ~~CF~C~~C~~~L~~~g~~f--~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 86 SRCLKCSSCQAQLGDIGTSS--YTKSGMILCRNDYIR 120 (123)
T ss_dssp TTTSBCTTTCCBGGGTTCCC--BCSSSCCBCHHHHHH
T ss_pred ccccCcCcCCCcccccCCce--EEECCEEeCHHHhhh
Confidence 444566666666542 1233 233456677777654
No 138
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.22 E-value=48 Score=17.91 Aligned_cols=36 Identities=17% Similarity=0.359 Sum_probs=24.4
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
.+-..-+.|..|-..+... .| ...=+..||..|...
T Consensus 30 ~wH~~CF~C~~C~~~L~~~-~f--~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 30 QWHNDCFNCKKCSLSLVGR-GF--LTERDDILCPDCGKD 65 (72)
T ss_dssp EECTTTCBCSSSCCBCTTS-CC--EECSSSEECHHHHHT
T ss_pred ccCcccCEeccCCCcCCCC-cc--EeECCEEEChhHcCc
Confidence 4445668899998887533 44 234578899988753
No 139
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.37 E-value=57 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQV 63 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~ 63 (122)
.+-..-+.|..|-..+...+.|+ ...=+..||..|+...+..
T Consensus 88 ~~H~~CF~C~~C~~~L~~g~~f~-~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 88 VYHLHCFACVVCKRQLATGDEFY-LMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EEEGGGCBCTTTCCBCCTTCEEE-ECTTSCEEEHHHHHHHHHC
T ss_pred eEeeCCCcCCCCCCCCCCCCceE-EccCCeEECHHHHHHHhhc
Confidence 34455678999988886444442 3445789999998766543
No 140
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.03 E-value=35 Score=18.99 Aligned_cols=36 Identities=6% Similarity=0.155 Sum_probs=19.5
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYI 61 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i 61 (122)
-..-+.|..|-..+... .| ...=+..||..|+...+
T Consensus 38 H~~CF~C~~C~~~L~~~-~~--~~~~g~~yC~~cy~~~~ 73 (79)
T 1x62_A 38 HPECYVCTDCGTNLKQK-GH--FFVEDQIYCEKHARERV 73 (79)
T ss_dssp CTTTTSCSSSCCCHHHH-CC--EESSSCEECHHHHHHHH
T ss_pred CcCcCeeCCCCCCCCCC-Ce--EeECCEEECHHHHHHHh
Confidence 34446677776666432 23 12236677777775443
No 141
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=22.55 E-value=39 Score=17.66 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.6
Q ss_pred CceecCCCCCCCCCC
Q 033301 70 TAKIECPGLECRHDL 84 (122)
Q Consensus 70 ~~~i~CP~~~C~~~i 84 (122)
....+||.++|...-
T Consensus 7 ~~~~~CPtpGC~G~G 21 (46)
T 2jyd_A 7 SADLKCPTPGCDGSG 21 (46)
T ss_dssp TBTTSCSCSSCCSBS
T ss_pred ccCCcCCCCCcCccC
Confidence 457789999998643
No 142
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=22.46 E-value=1e+02 Score=16.63 Aligned_cols=14 Identities=14% Similarity=0.584 Sum_probs=10.9
Q ss_pred ceecCCCCCCCCCCCh
Q 033301 71 AKIECPGLECRHDLDP 86 (122)
Q Consensus 71 ~~i~CP~~~C~~~i~~ 86 (122)
.||+|. .|+.+|..
T Consensus 2 iPVRCF--TCGkvi~~ 15 (55)
T 1ef4_A 2 IPVRCL--SCGKPVSA 15 (55)
T ss_dssp CSSSCS--CTTSCCHH
T ss_pred CCeecC--CCCCChhH
Confidence 589998 69987753
No 143
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=22.03 E-value=30 Score=18.83 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=17.5
Q ss_pred Ccccccccccccccccc--ccccCC--cCCcchHHHHHH
Q 033301 25 SSFTCEICIEPMAASKK--FKNKNL--CTHPFSQDCIAK 59 (122)
Q Consensus 25 ~~~~C~IC~~~~~~~~~--~~~~~~--C~H~fC~~C~~~ 59 (122)
....||-|.-.+...+. ..+-.. |++.||-.|...
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 34578888776643211 101122 566666655544
No 144
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.84 E-value=63 Score=17.79 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=24.8
Q ss_pred eecCCCCCCCCCCChhhcccCCCHHHHHHHHHHHHhhhh
Q 033301 72 KIECPGLECRHDLDPFSCEPIVPASLFSKWCDVLCEDYV 110 (122)
Q Consensus 72 ~i~CP~~~C~~~i~~~~i~~~l~~~~~~ky~~~~~~~~i 110 (122)
.-.|| .|+.......=..+-+.+-+.+|...+...+-
T Consensus 18 k~~CP--~CG~~T~~~hParfSp~Dky~~yR~~~kk~~~ 54 (60)
T 2apo_B 18 KEICP--KCGEKTVIPKPPKFSLEDRWGKYRRMLKRALK 54 (60)
T ss_dssp SSBCS--SSCSBCBCCCCCCCCTTCTTHHHHHHHHHHHH
T ss_pred cccCc--CCCCcCCCCCCCCCCCCcchHHHHHHHHHHhc
Confidence 33577 58766555555556677888999887766654
No 145
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.41 E-value=34 Score=18.50 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=24.5
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKY 60 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~ 60 (122)
.+-..-+.|..|...+... .| ...=+..||..|+...
T Consensus 28 ~~H~~CF~C~~C~~~L~~~-~~--~~~~~~~yC~~cy~~~ 64 (72)
T 1x4k_A 28 SWHETCFICHRCQQPIGTK-SF--IPKDNQNFCVPCYEKQ 64 (72)
T ss_dssp EEETTTTCCSSSCCCCCSS-SE--EEETTEEEEHHHHHHH
T ss_pred eecccCCcccccCCccCCC-cc--CccCCeEECHHHHhHH
Confidence 3445668899998887654 34 2233678999998643
No 146
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.29 E-value=73 Score=18.15 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 23 SGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 23 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
-..-+.|..|...+.... | ...=+..||..|+..
T Consensus 39 H~~CF~C~~C~~~L~~~~-~--~~~~g~~yC~~~y~~ 72 (91)
T 2d8y_A 39 HISCFRCSYCNNKLSLGT-Y--ASLHGRIYCKPHFNQ 72 (91)
T ss_dssp ETTTCBCTTTCCBCCTTT-C--CCSSSCCCCHHHHHH
T ss_pred CCCCCeeCCCCCCCCCCC-c--EeECCEEECHHHHHH
Confidence 345578888888776543 4 233367899988754
No 147
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=21.26 E-value=52 Score=17.98 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHH
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAK 59 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~ 59 (122)
.+-..-+.|..|-..+... .| ...=+..||..|+..
T Consensus 41 ~~H~~CF~C~~C~~~L~~~-~f--~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 41 SWHDYCFHCKKCSVNLANK-RF--VFHQEQVYCPDCAKK 76 (77)
T ss_dssp EEETTTCBCSSSCCBCTTS-CC--CEETTEECCHHHHHH
T ss_pred eeCcccCEehhcCCCCCCC-cc--EeECCEEEChHHhcc
Confidence 4445668888998887643 34 233467899988753
No 148
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=20.85 E-value=76 Score=19.16 Aligned_cols=51 Identities=22% Similarity=0.485 Sum_probs=35.1
Q ss_pred hhCCCccccccccccccccccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCCh
Q 033301 21 ESSGSSFTCEICIEPMAASKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDP 86 (122)
Q Consensus 21 ~~~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~ 86 (122)
.+-..-+.|..|...+... .| ...=|..||..|+... +..+|. .|...|..
T Consensus 25 ~~H~~CF~C~~C~~~L~~~-~f--~~~~g~~yC~~cy~~~----------~~~~C~--~C~~~I~~ 75 (126)
T 2xqn_T 25 NWHLKHFCCFDCDSILAGE-IY--VMVNDKPVCKPCYVKN----------HAVVCQ--GCHNAIDP 75 (126)
T ss_dssp EECGGGSBCTTTCCBCTTS-EE--EEETTEEEEHHHHHHH----------SCCBCT--TTCSBCCT
T ss_pred CccCCCCCcCCCCCCCCcC-EE--EeECCEEechHHhCcC----------cCccCc--ccCCcCCc
Confidence 3445668899999888643 44 2344788999998643 235787 68887775
No 149
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=63 Score=19.64 Aligned_cols=80 Identities=8% Similarity=-0.037 Sum_probs=46.2
Q ss_pred hCCCccccccccccccc-cccccccCCcCCcchHHHHHHHHHHHhhcCCCceecCCCCCCCCCCChhhcccCCCHHHHHH
Q 033301 22 SSGSSFTCEICIEPMAA-SKKFKNKNLCTHPFSQDCIAKYIQVKVQDDNTAKIECPGLECRHDLDPFSCEPIVPASLFSK 100 (122)
Q Consensus 22 ~~~~~~~C~IC~~~~~~-~~~~~~~~~C~H~fC~~C~~~~i~~~i~~~~~~~i~CP~~~C~~~i~~~~i~~~l~~~~~~k 100 (122)
+-..-+.|..|-..+.. ...| ...=+..||..|+...+.. .-+|- .|...|....|.. +...
T Consensus 28 wH~~CF~C~~C~~~L~~~~~~~--~~~~g~~yC~~cy~~~f~~--------~~~C~--~C~~~I~~~~~~~-~g~~---- 90 (122)
T 1m3v_A 28 WHSRCLKCSSCQAQLGDIGTSS--YTKSGMILCRNDYIRLFGN--------SGAGG--SGGHMGSGGDVMV-VGEP---- 90 (122)
T ss_dssp ECHHHHCCSSSCCCTTTSEECC--EEETTEEECHHHHHHHHCC--------CCSSS--CSSCCSCCEESSS-SSSS----
T ss_pred eHhhCCCcCCCCCcccccCCeE--EEECCeeecHHHHHHHcCC--------CCccc--cCCCCcCchheEE-cCCc----
Confidence 33445789999888752 2334 3444778999998764321 11686 7998888766533 2211
Q ss_pred HHHHHHhhhhcCCCceecCC
Q 033301 101 WCDVLCEDYVLGFERSYCPN 120 (122)
Q Consensus 101 y~~~~~~~~i~~~~~~~CP~ 120 (122)
.+.-+.|+..+...||+.
T Consensus 91 --~l~g~~f~~~~~~~yC~~ 108 (122)
T 1m3v_A 91 --TLMGGEFGDEDERLITRL 108 (122)
T ss_dssp --SCCSCTTCCTTCCCCEEC
T ss_pred --CCCCCccEecCCEeEccC
Confidence 011234444555677764
Done!