BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033302
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
Length = 116
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 81/135 (60%), Gaps = 32/135 (23%)
Query: 1 MRASKFSAFSLLLAAIILAVH----VASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECM 56
MR ++++A IL VH +S SSG F+P++S+C G+IAEC
Sbjct: 1 MRGLSTKPVAIIIA--ILTVHFLFAAVTSQSSG----------DFVPIESKCNGTIAECS 48
Query: 57 SVEGDDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQA 107
++ EF MD EINRRILA +RRN+VPCSRRGASYYNCR G QA
Sbjct: 49 LSTAEE-------EFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQA 101
Query: 108 NPYSRGCSAITRCRR 122
NPYSRGCSAITRCRR
Sbjct: 102 NPYSRGCSAITRCRR 116
>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23
PE=1 SV=1
Length = 138
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/132 (56%), Positives = 85/132 (64%), Gaps = 26/132 (19%)
Query: 9 FSLLLAAIILAVHVASS--SSSGVDFDGLGHQLGFIPVKSECRGSIAECM--SVEGDDGD 64
F++LL ILAVH S SS +F G F P ++ECRG+IAEC + GD GD
Sbjct: 14 FAILL---ILAVHNWSVAVSSQSTEFAG-----DFPPFETECRGTIAECSVSAALGDGGD 65
Query: 65 -----QELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPY 110
E+ EF MD EINRRILA +RRN++PCSRRGASYYNCR G QANPY
Sbjct: 66 LFYGGGEMGEEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPY 125
Query: 111 SRGCSAITRCRR 122
SRGCSAITRCRR
Sbjct: 126 SRGCSAITRCRR 137
>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1
Length = 120
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 72/129 (55%), Gaps = 28/129 (21%)
Query: 8 AFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSE------CRGSIAECMSVEGD 61
+F+L L IL V + SS G + LG + + C GSIAEC+ E +
Sbjct: 4 SFTLFLTLTILVVFIISSPPVQA---GFANDLGGVAWATTGDNGSGCHGSIAECIGAEEE 60
Query: 62 DGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSR 112
+ MD EINRRILA ++RNSVPCSRRGASYYNC+ G QANPYSR
Sbjct: 61 E----------MDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSR 110
Query: 113 GCSAITRCR 121
GCS I RCR
Sbjct: 111 GCSKIARCR 119
>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1
Length = 115
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 77/124 (62%), Gaps = 29/124 (23%)
Query: 11 LLLAAIILA--VHVASSSSSGVDFDGLGHQLGFIPVKSE--CRGSIAECMSVEGDDGDQE 66
L+L +I A + +A++ SG +D + +P +S C+GSI EC++ E
Sbjct: 7 LILCVLIGAFFISMAAAGDSGA-YDWV------MPARSGGGCKGSIGECIAEE------- 52
Query: 67 LDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAI 117
EF +D E NRRILA +++NSVPCSRRGASYYNC+ G QANPYSRGCSAI
Sbjct: 53 --EEFELDSESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAI 110
Query: 118 TRCR 121
TRCR
Sbjct: 111 TRCR 114
>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1
Length = 119
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 45/59 (76%), Gaps = 9/59 (15%)
Query: 73 MDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
D +I+RRILA MRRNSVPCSRRGASYYNC+ G QANPYSRGCS ITRCRR
Sbjct: 61 FDSDISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119
>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1
Length = 110
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 14/73 (19%)
Query: 60 GDDGDQELDLEFAMDGEINRRILA----------MRRNSVPCSRRGASYYNCRAGGQANP 109
G+DG+ L++ MD E NRR LA +R+N+VPCSRRG SYY+C+ +ANP
Sbjct: 39 GEDGE----LDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANP 94
Query: 110 YSRGCSAITRCRR 122
Y RGCS IT C R
Sbjct: 95 YRRGCSVITHCYR 107
>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1
Length = 110
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 11/78 (14%)
Query: 55 CMSVEGDDGDQELDLEFAMDGEINRRILA----------MRRNSVPCSRRGASYYNCRAG 104
C++ +G G+ + +LE MD E NRR LA +++N+VPCSRRG SYY+C+
Sbjct: 31 CINGQGCIGEDD-ELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKR 89
Query: 105 GQANPYSRGCSAITRCRR 122
+ NPY RGCSAIT C R
Sbjct: 90 RRNNPYRRGCSAITHCYR 107
>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1
Length = 113
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%), Gaps = 18/76 (23%)
Query: 57 SVEGDDGDQELDLEFAMDGEINRRIL----------AMRRNSVPCSRRGASYYNCRAGGQ 106
S+ G+D D M EI+RR+L +RR+ VPC + GASYY+CR+ GQ
Sbjct: 39 SIIGEDED-------LMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRS-GQ 90
Query: 107 ANPYSRGCSAITRCRR 122
AN YSRGC ITRC R
Sbjct: 91 ANSYSRGCDTITRCAR 106
>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
Length = 118
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 38/58 (65%), Gaps = 11/58 (18%)
Query: 75 GEINRRILAMR----------RNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
EI+RR++ MR R+ VPC + GASYY CR+G QAN Y+RGCS ITRC R
Sbjct: 55 SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRCAR 111
>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1
Length = 129
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 16/77 (20%)
Query: 62 DGDQELDLEFAMDGEINRRILAMRR------------NSVPCS-RRGASYY--NC-RAGG 105
DG++ ++ DG +RR L RR N VPC R G SYY NC RA G
Sbjct: 53 DGEESFEVTEEDDGVTDRRSLYWRRTKYYISYGALSANRVPCPPRSGRSYYTHNCFRARG 112
Query: 106 QANPYSRGCSAITRCRR 122
+PYSRGCS+ITRCRR
Sbjct: 113 PVHPYSRGCSSITRCRR 129
>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1
Length = 117
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 34/129 (26%)
Query: 6 FSAFSLLLAAIILAVHVASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQ 65
FS ++ ++LA HV S +SS S C GS+AEC S+ +
Sbjct: 9 FSTITIFFLCLLLA-HVTSKASSS----------------SLCNGSVAECSSMVETE--- 48
Query: 66 ELDLEFAMDGEINRRIL----------AMRRNSVPCS--RRGASYYNCRAGGQANPYSRG 113
++ M+ ++R+ A+RRN C +RG SY +NPYSRG
Sbjct: 49 --EMSVIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRG 106
Query: 114 CSAITRCRR 122
CS RC R
Sbjct: 107 CSKHYRCGR 115
>sp|A8MQI8|RLF5_ARATH Protein RALF-like 5 OS=Arabidopsis thaliana GN=RALFL5 PE=2 SV=1
Length = 89
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 90 PCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122
PC+ R + +C ANPY RGC+ I+RCRR
Sbjct: 38 PCNPRFPTP-DCYKRTPANPYRRGCTCISRCRR 69
>sp|A7REE5|RLF3_ARATH Protein RALF-like 3 OS=Arabidopsis thaliana GN=RALFL3 PE=3 SV=1
Length = 90
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 101 CRAGGQANPYSRGCSAITRCRR 122
C ANPY RGC ITRC+R
Sbjct: 67 CLPKQPANPYRRGCLKITRCQR 88
>sp|Q3ECL0|RLF9_ARATH Protein RALF-like 9 OS=Arabidopsis thaliana GN=RALFL9 PE=3 SV=1
Length = 75
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 80 RILAMRRNSVPCSRRGASYYNCRAG-------GQANPYSRGCSAITRCR 121
++ A R + P RG +C +ANPY RGC I RCR
Sbjct: 25 KVEATRYITYPAIDRGDHAVHCDKAHPNTCKKKEANPYQRGCEKINRCR 73
>sp|Q9LDU1|RLF28_ARATH Protein RALF-like 28 OS=Arabidopsis thaliana GN=RALFL28 PE=2 SV=1
Length = 85
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 95 GASYYNCRAGGQANPYSRGCSAITRCR 121
G + NC ANPY RGC RCR
Sbjct: 47 GCDHGNCPPDQPANPYHRGCEKSKRCR 73
>sp|A8MQM7|RLF15_ARATH Protein RALF-like 15 OS=Arabidopsis thaliana GN=RALFL15 PE=3 SV=1
Length = 79
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 107 ANPYSRGCSAITRCRR 122
ANPY RGC I RCRR
Sbjct: 59 ANPYRRGCGTIERCRR 74
>sp|A8MRF9|RLF21_ARATH Protein RALF-like 21 OS=Arabidopsis thaliana GN=RALFL21 PE=2 SV=1
Length = 105
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 107 ANPYSRGCSAITRCRR 122
NPY RGCS I RCRR
Sbjct: 60 VNPYRRGCSKIHRCRR 75
>sp|O65919|RLF10_ARATH Protein RALF-like 10 OS=Arabidopsis thaliana GN=RALFL10 PE=2 SV=1
Length = 73
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 107 ANPYSRGCSAITRCRR 122
AN Y RGCS ITRC+R
Sbjct: 57 ANEYRRGCSKITRCKR 72
>sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus
GN=POLR1C PE=2 SV=1
Length = 346
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 11 LLLAAI-ILAVH--VASSSSSGVDFDGLGHQLGFIPVKSECRGSIAECMSVEGDDGDQEL 67
+LLA + +AV + +++S V + L H+LG IP+ ++ R + E + +GD+G E+
Sbjct: 79 ILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR--LFEYRN-QGDEGGTEI 135
Query: 68 D-LEFAMDGEINRRILAMRRNSVPCSRRGASYYNCRA----------GGQANPYSRGC 114
D L+F + R A + +S P Y N R G QA+ + G
Sbjct: 136 DTLQFRLQVRCTRNPHAAKDSSDP----NELYVNHRVYTRHMTWVPLGNQADLFPEGA 189
>sp|Q0V822|RLF26_ARATH Protein RALF-like 26 OS=Arabidopsis thaliana GN=RALFL26 PE=3 SV=1
Length = 76
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 110 YSRGCSAITRCRR 122
YSRGCS ITRCRR
Sbjct: 62 YSRGCSRITRCRR 74
>sp|F4ISE1|RLF12_ARATH Protein RALF-like 12 OS=Arabidopsis thaliana GN=RALFL12 PE=2 SV=1
Length = 72
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 107 ANPYSRGCSAITRCRR 122
N YSRGCS I RCRR
Sbjct: 56 VNEYSRGCSKIHRCRR 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,370,368
Number of Sequences: 539616
Number of extensions: 1546526
Number of successful extensions: 2955
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2915
Number of HSP's gapped (non-prelim): 29
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)