Query 033302
Match_columns 122
No_of_seqs 125 out of 157
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 12:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03221 rapid alkalinization 100.0 3.3E-36 7.2E-41 227.4 7.4 86 37-122 36-137 (137)
2 PLN03222 rapid alkalinization 100.0 4.9E-35 1.1E-39 217.0 5.3 76 40-122 35-119 (119)
3 PF05498 RALF: Rapid ALkaliniz 99.9 5.8E-24 1.3E-28 143.2 3.9 56 67-122 2-66 (66)
4 PF07172 GRP: Glycine rich pro 89.2 0.43 9.3E-06 34.1 2.9 24 1-25 1-24 (95)
5 PF12273 RCR: Chitin synthesis 73.0 2.7 5.9E-05 30.5 2.0 17 5-21 1-17 (130)
6 PF05279 Asp-B-Hydro_N: Aspart 53.8 11 0.00023 31.4 2.3 11 4-14 10-20 (243)
7 PF12662 cEGF: Complement Clr- 35.9 30 0.00065 19.3 1.6 22 97-118 1-23 (24)
8 PF08358 Flexi_CP_N: Carlaviru 20.1 55 0.0012 21.4 0.9 10 104-113 38-47 (52)
9 PF10731 Anophelin: Thrombin i 15.9 1.5E+02 0.0034 20.4 2.4 15 4-18 3-17 (65)
10 PF13127 DUF3955: Protein of u 15.8 2.4E+02 0.0053 18.6 3.3 35 1-37 1-35 (63)
No 1
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=3.3e-36 Score=227.39 Aligned_cols=86 Identities=70% Similarity=1.217 Sum_probs=75.1
Q ss_pred ccccccccCCCcccchhhhhcccC--CCCc---hhhh--hhhhccccccchhhh---------cccCCCCCCCCCCCCcC
Q 033302 37 HQLGFIPVKSECRGSIAECMSVEG--DDGD---QELD--LEFAMDGEINRRILA---------MRRNSVPCSRRGASYYN 100 (122)
Q Consensus 37 ~~~~~~~~~~~C~Gsv~EC~~~~~--~~~d---~~~e--eE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYyn 100 (122)
++++|.++...|+|+++||++..+ +|+| +++| +|++||||++||+|+ |++|+|||+++|+||||
T Consensus 36 ~~~~~~~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYyn 115 (137)
T PLN03221 36 FAGDFPPFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYN 115 (137)
T ss_pred ccccccCCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCccc
Confidence 344677777889999999996543 6777 4444 499999999999995 99999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccC
Q 033302 101 CRAGGQANPYSRGCSAITRCRR 122 (122)
Q Consensus 101 C~p~~~aNPY~RGCs~itRCrr 122 (122)
|++++|+|||+|||++||||||
T Consensus 116 C~~~~pANPY~RGCs~ITRCrR 137 (137)
T PLN03221 116 CRRGAQANPYSRGCSAITRCRR 137 (137)
T ss_pred cCCCCCCCCCCCCcccccccCC
Confidence 9999999999999999999997
No 2
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=217.02 Aligned_cols=76 Identities=74% Similarity=1.322 Sum_probs=69.3
Q ss_pred cccccCCCcccchhhhhcccCCCCchhhhhhhhccccccchhhh---------cccCCCCCCCCCCCCcCCCCCCCCCCC
Q 033302 40 GFIPVKSECRGSIAECMSVEGDDGDQELDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPY 110 (122)
Q Consensus 40 ~~~~~~~~C~Gsv~EC~~~~~~~~d~~~eeE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYynC~p~~~aNPY 110 (122)
+|.+....|+|+++||++. ++|+||+|+||++||+|+ |++|+|||+++|+|||||++++|+|||
T Consensus 35 ~~~~~~~~C~Gsi~EC~~~-------~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~~ANPY 107 (119)
T PLN03222 35 DFMPIDSKCNGTIAECSLS-------TAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPY 107 (119)
T ss_pred cccCCCCcCCCCHHHhhcc-------cccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCCccccCCCCCCCCC
Confidence 6677777899999999973 235799999999999995 999999999999999999999999999
Q ss_pred CCCCcccccccC
Q 033302 111 SRGCSAITRCRR 122 (122)
Q Consensus 111 ~RGCs~itRCrr 122 (122)
+|||++||||||
T Consensus 108 ~RGCs~ITrCrR 119 (119)
T PLN03222 108 SRGCSAITRCRR 119 (119)
T ss_pred CCCchhhccccC
Confidence 999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.89 E-value=5.8e-24 Score=143.24 Aligned_cols=56 Identities=64% Similarity=1.136 Sum_probs=52.9
Q ss_pred hhhhhhccccccchhhh---------cccCCCCCCCCCCCCcCCCCCCCCCCCCCCCcccccccC
Q 033302 67 LDLEFAMDGEINRRILA---------MRRNSVPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122 (122)
Q Consensus 67 ~eeE~~m~Se~~RR~La---------L~rd~vPC~~rG~sYynC~p~~~aNPY~RGCs~itRCrr 122 (122)
+|+|++|+|+++||+|+ |++|++||+++|.+||||.+++|+|||+|||++||||||
T Consensus 2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 36789999999999995 999999999999999999988999999999999999997
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=89.16 E-value=0.43 Score=34.13 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=11.1
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhc
Q 033302 1 MRASKFSAFSLLLAAIILAVHVASS 25 (122)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~~~~~ 25 (122)
|. +|...|+.+++|++|||...++
T Consensus 1 Ma-SK~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHHhhhh
Confidence 66 4443444444444555544333
No 5
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=73.04 E-value=2.7 Score=30.47 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033302 5 KFSAFSLLLAAIILAVH 21 (122)
Q Consensus 5 ~~~~~~~~~~~~~l~~~ 21 (122)
||++|++|+++++|+|+
T Consensus 1 RW~l~~iii~~i~l~~~ 17 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLF 17 (130)
T ss_pred CeeeHHHHHHHHHHHHH
Confidence 45566555444344333
No 6
>PF05279 Asp-B-Hydro_N: Aspartyl beta-hydroxylase N-terminal region; InterPro: IPR007943 This domain is found in members of the junctin, junctate and aspartyl beta-hydroxylase protein families. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin []. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins []. This domain is also found in several eukaryotic triadin proteins. Triadin is a ryanodine receptor and calsequestrin binding protein located in junctional sarcoplasmic reticulum of striated muscles [].; GO: 0016020 membrane
Probab=53.81 E-value=11 Score=31.41 Aligned_cols=11 Identities=45% Similarity=0.609 Sum_probs=7.8
Q ss_pred chhHHHHHHHH
Q 033302 4 SKFSAFSLLLA 14 (122)
Q Consensus 4 ~~~~~~~~~~~ 14 (122)
++|..|||+++
T Consensus 10 ~~~~~~~~~~~ 20 (243)
T PF05279_consen 10 SSFFTWFLVLA 20 (243)
T ss_pred CchHHHHHHHH
Confidence 56777777766
No 7
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=35.87 E-value=30 Score=19.26 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=17.5
Q ss_pred CCc-CCCCCCCCCCCCCCCcccc
Q 033302 97 SYY-NCRAGGQANPYSRGCSAIT 118 (122)
Q Consensus 97 sYy-nC~p~~~aNPY~RGCs~it 118 (122)
||+ .|.++=.-+|-.|.|.-|.
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DId 23 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDID 23 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCC
Confidence 465 7888878888889998774
No 8
>PF08358 Flexi_CP_N: Carlavirus coat; InterPro: IPR013569 This domain is found together with the viral coat protein domain (IPR000052 from INTERPRO) in coat/capsid proteins of the plant infecting Carlavirus. It is required for genome encapsidation by forming ribonucleoprotein complexes along with TGB1 helicase and viral RNA. The N- and the C terminus of this coat protein can be exposed on the surface of the virus particle. The central core sequence may be important in maintaining correct tertiary structure of the coat protein and/or play a role in the interaction with the viral RNA. Coat proteins are often used to distinguish between Carlavirus isolates. In the coat protein amino acid sequences of definitive and tentative species of carlaviruses, there is a region of seven amino acids (GLGVPTE) that are conserved []. The complete coat protein (CP) sequences of 29 Indian Chrysanthemum virus B (CVB) isolates were highly heterogeneous, sharing nucleotide sequence identities of 74-98% [, ].
Probab=20.08 E-value=55 Score=21.39 Aligned_cols=10 Identities=60% Similarity=1.052 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 033302 104 GGQANPYSRG 113 (122)
Q Consensus 104 ~~~aNPY~RG 113 (122)
+.++|||+|-
T Consensus 38 ~d~tN~y~Rp 47 (52)
T PF08358_consen 38 GDPTNPYSRP 47 (52)
T ss_pred CCcCcccCCc
Confidence 3589999984
No 9
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=15.88 E-value=1.5e+02 Score=20.39 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=9.4
Q ss_pred chhHHHHHHHHHHHH
Q 033302 4 SKFSAFSLLLAAIIL 18 (122)
Q Consensus 4 ~~~~~~~~~~~~~~l 18 (122)
+|++.+.|+|+|++.
T Consensus 3 ~Kl~vialLC~aLva 17 (65)
T PF10731_consen 3 SKLIVIALLCVALVA 17 (65)
T ss_pred chhhHHHHHHHHHHH
Confidence 567777777774433
No 10
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=15.79 E-value=2.4e+02 Score=18.63 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=0.0
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHhcCCcccccCCCcc
Q 033302 1 MRASKFSAFSLLLAAIILAVHVASSSSSGVDFDGLGH 37 (122)
Q Consensus 1 m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 37 (122)
|..-....++++.+ ++.+..-...-+.||.+|.-|
T Consensus 1 m~~~~l~~~~~llg--~~~l~i~~~~~syVd~~G~L~ 35 (63)
T PF13127_consen 1 MKKYILSLILLLLG--VVCLFIFNIIGSYVDEDGVLH 35 (63)
T ss_pred CcchHHHHHHHHHH--HHHHHHHhcccceECCCCeEe
Done!