Query 033302
Match_columns 122
No_of_seqs 125 out of 157
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cz6_A Protein (androctonin); 42.0 7.6 0.00026 21.5 0.6 15 90-104 9-23 (26)
2 2kmz_A Tumor necrosis factor r 22.2 64 0.0022 20.5 2.5 25 87-112 5-35 (53)
3 1clv_I Protein (alpha-amylase 20.3 22 0.00074 20.5 -0.0 9 85-93 11-19 (32)
4 2kn0_A FN14; tweak, TNF recept 11.8 83 0.0028 20.8 1.1 26 88-114 2-33 (66)
5 1as5_A Conotoxin Y-PIIIE; neur 10.6 2.1E+02 0.0071 15.7 2.4 23 89-122 2-24 (26)
6 4fhd_A Spore photoproduct lyas 9.7 62 0.0021 26.8 -0.0 22 94-116 96-119 (368)
7 1e9t_A HITF, intestinal trefoi 9.5 2.1E+02 0.007 17.8 2.4 18 86-103 16-33 (59)
8 3u02_A Putative transcription- 9.1 86 0.0029 24.9 0.6 12 106-117 46-58 (252)
9 1ozb_I Preprotein translocase 8.5 1.8E+02 0.006 14.3 1.5 14 88-102 7-20 (27)
10 1xrx_A SEQA protein; protein f 8.0 71 0.0024 20.1 -0.3 17 74-90 25-41 (50)
No 1
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=41.96 E-value=7.6 Score=21.51 Aligned_cols=15 Identities=47% Similarity=1.147 Sum_probs=11.9
Q ss_pred CCCCCCCCCcCCCCC
Q 033302 90 PCSRRGASYYNCRAG 104 (122)
Q Consensus 90 PC~~rG~sYynC~p~ 104 (122)
-|.+||.-||.|..+
T Consensus 9 icrrrggcyykctnr 23 (26)
T 1cz6_A 9 ICRRRGGCYYKCTNR 23 (26)
T ss_dssp ECCSSSCCEEEECCC
T ss_pred HHHhcCceEEEccCC
Confidence 377889999999764
No 2
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=22.24 E-value=64 Score=20.50 Aligned_cols=25 Identities=40% Similarity=0.804 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCc----CCCC--CCCCCCCCC
Q 033302 87 NSVPCSRRGASYY----NCRA--GGQANPYSR 112 (122)
Q Consensus 87 d~vPC~~rG~sYy----nC~p--~~~aNPY~R 112 (122)
.+-||+ ||.||. .|-. .-++.||+.
T Consensus 5 ~~~pC~-~GsswS~DLdKCmdcs~C~~~p~SD 35 (53)
T 2kmz_A 5 GTAPCS-RGSSWSADLDKCMDCASCRARPHSD 35 (53)
T ss_dssp SCCSSC-SSCBCCTTTTCCBCSTTCSSCCCCH
T ss_pred CcCcCC-CCcccchhhhhhhccccCCCCcccc
Confidence 356897 799986 3422 236667764
No 3
>1clv_I Protein (alpha-amylase inhibitor); insect alpha-amylase inhibitor, amaranthus hypochondriacus, yellow MEAL WORM, knottin, hydrolase; 2.00A {Tenebrio molitor} SCOP: g.3.2.1 PDB: 1htx_A 1qfd_A
Probab=20.28 E-value=22 Score=20.47 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=6.2
Q ss_pred ccCCCCCCC
Q 033302 85 RRNSVPCSR 93 (122)
Q Consensus 85 ~rd~vPC~~ 93 (122)
|-|-|||..
T Consensus 11 kmdgvpcce 19 (32)
T 1clv_I 11 KMDGVPCCE 19 (32)
T ss_dssp HHHCCCBCT
T ss_pred cCCCccccC
Confidence 446788875
No 4
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=11.79 E-value=83 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCc----CCC--CCCCCCCCCCCC
Q 033302 88 SVPCSRRGASYY----NCR--AGGQANPYSRGC 114 (122)
Q Consensus 88 ~vPC~~rG~sYy----nC~--p~~~aNPY~RGC 114 (122)
+-||+ ||++|. +|- ..-++.||+-=|
T Consensus 2 ~~pCp-rGssws~dLdkCM~Cs~C~~~p~SdfC 33 (66)
T 2kn0_A 2 QGECP-EGRAYSQDLGKCMECSVCKNSEKSDFC 33 (66)
T ss_dssp CCCCC-SSEEEETTTTEEEESTTCSSCCCCTTT
T ss_pred cccCC-CCcccchhHHhhcccCcCCCCCCcccc
Confidence 35776 677775 442 123556666544
No 5
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=10.65 E-value=2.1e+02 Score=15.66 Aligned_cols=23 Identities=48% Similarity=1.158 Sum_probs=14.0
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCcccccccC
Q 033302 89 VPCSRRGASYYNCRAGGQANPYSRGCSAITRCRR 122 (122)
Q Consensus 89 vPC~~rG~sYynC~p~~~aNPY~RGCs~itRCrr 122 (122)
+||. -|..|++ | -||+...-|+|
T Consensus 2 ppcc----lyg~cr~------~-pgc~~a~cc~~ 24 (26)
T 1as5_A 2 PPCC----LYGKCRR------Y-PGCSSASCCQR 24 (26)
T ss_dssp CCSS----STTCCCC------C-TTCTTCCCSCC
T ss_pred CCce----ecccccc------C-CCcchhhhhcc
Confidence 4665 3545655 4 57877776764
No 6
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A*
Probab=9.73 E-value=62 Score=26.82 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCCCcCCCCCC--CCCCCCCCCcc
Q 033302 94 RGASYYNCRAGG--QANPYSRGCSA 116 (122)
Q Consensus 94 rG~sYynC~p~~--~aNPY~RGCs~ 116 (122)
+|..++.|.|.. ..||| +||+-
T Consensus 96 k~~~~~~~~~s~~Y~ln~y-~GC~~ 119 (368)
T 4fhd_A 96 RTLKFDSSKPSAEYAIPLA-TGCMG 119 (368)
T ss_dssp CCCSCCEETTTEEEECCSE-EBCSC
T ss_pred cccceEecCCCCceeeCCc-cCCCC
Confidence 455566666643 68897 89863
No 7
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=9.49 E-value=2.1e+02 Score=17.77 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCCCcCCCC
Q 033302 86 RNSVPCSRRGASYYNCRA 103 (122)
Q Consensus 86 rd~vPC~~rG~sYynC~p 103 (122)
.+++.|.-+|.+-..|..
T Consensus 16 ~~R~dCG~pgit~~~C~~ 33 (59)
T 1e9t_A 16 KDRVDCGYPHVTPKECNN 33 (59)
T ss_dssp TTCCCCCCSSCCTTTTTT
T ss_pred hhcccCCCCCCCHHHHhh
Confidence 346778655666555654
No 8
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=9.11 E-value=86 Score=24.88 Aligned_cols=12 Identities=42% Similarity=0.822 Sum_probs=5.8
Q ss_pred CCCCC-CCCCccc
Q 033302 106 QANPY-SRGCSAI 117 (122)
Q Consensus 106 ~aNPY-~RGCs~i 117 (122)
|..|| +|||+++
T Consensus 46 P~iP~KTrgN~a~ 58 (252)
T 3u02_A 46 PNVPYKTRGNGAV 58 (252)
T ss_dssp TTC-----CCEEE
T ss_pred CCCCccCCCCcEE
Confidence 67788 8888764
No 9
>1ozb_I Preprotein translocase SECA subunit; zinc binding motif, protein-protein complex, protein transport; 2.80A {Haemophilus influenzae} SCOP: g.74.1.1
Probab=8.54 E-value=1.8e+02 Score=14.26 Aligned_cols=14 Identities=36% Similarity=1.070 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCcCCC
Q 033302 88 SVPCSRRGASYYNCR 102 (122)
Q Consensus 88 ~vPC~~rG~sYynC~ 102 (122)
..||. .|..|-.|.
T Consensus 7 ~cpcg-sgkk~k~c~ 20 (27)
T 1ozb_I 7 PCPCG-SGKKYKHCH 20 (27)
T ss_dssp BCTTT-CSSBGGGTT
T ss_pred cccCC-Cchhhhhcc
Confidence 45665 577777764
No 10
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=7.97 E-value=71 Score=20.12 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=9.2
Q ss_pred cccccchhhhcccCCCC
Q 033302 74 DGEINRRILAMRRNSVP 90 (122)
Q Consensus 74 ~Se~~RR~LaL~rd~vP 90 (122)
.|++.||+|.|...++|
T Consensus 25 aSdiLRRll~l~~~~~~ 41 (50)
T 1xrx_A 25 ASDILRRMLKFSAASQP 41 (50)
T ss_dssp HHHHHHHHHTC------
T ss_pred HHHHHHHHHcCCccccc
Confidence 46789999987666543
Done!