Query 033302
Match_columns 122
No_of_seqs 125 out of 157
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 20:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 69.1 0.5 3.7E-05 25.2 0.1 14 99-114 13-26 (27)
2 d1clvi_ g.3.2.1 (I:) alpha-amy 20.3 10 0.00074 20.5 -0.0 9 85-93 11-19 (32)
3 d1e9ta_ g.16.1.1 (A:) Intestin 14.7 52 0.0038 19.2 2.4 18 86-103 16-33 (59)
4 d1hvwa_ g.3.6.2 (A:) Atracotox 12.2 43 0.0031 17.1 1.2 14 101-114 1-14 (26)
5 d2dw4a3 d.16.1.5 (A:655-763) L 11.4 42 0.0031 19.2 1.2 12 105-116 97-108 (109)
6 d2v5za2 d.16.1.5 (A:290-401) M 11.2 36 0.0026 19.9 0.8 11 106-116 100-110 (112)
7 d1b5qa2 d.16.1.5 (A:294-405) P 8.0 57 0.0042 18.8 0.9 10 106-115 101-110 (112)
8 d1e0fi_ g.3.15.2 (I:) Haemadin 6.4 93 0.0067 18.2 1.2 14 87-101 6-19 (57)
9 d2p2ea1 b.124.1.1 (A:3-120) Pu 6.3 57 0.0041 21.2 0.2 10 106-115 31-40 (118)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 5.8 1E+02 0.0076 18.0 1.3 15 13-27 8-22 (158)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=69.07 E-value=0.5 Score=25.17 Aligned_cols=14 Identities=50% Similarity=1.305 Sum_probs=10.1
Q ss_pred cCCCCCCCCCCCCCCC
Q 033302 99 YNCRAGGQANPYSRGC 114 (122)
Q Consensus 99 ynC~p~~~aNPY~RGC 114 (122)
|||.. .+|||+.-|
T Consensus 13 ynccr--scnpytkrc 26 (27)
T d1omca_ 13 YNCCR--SCNPYTKRC 26 (27)
T ss_dssp TCBSS--CEETTTTEE
T ss_pred cchhc--ccCcccccc
Confidence 46655 689998755
No 2
>d1clvi_ g.3.2.1 (I:) alpha-amylase inhibitor (AAI) {Prince's feather (Amaranthus hypochondriacus) [TaxId: 28502]}
Probab=20.28 E-value=10 Score=20.47 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=6.2
Q ss_pred ccCCCCCCC
Q 033302 85 RRNSVPCSR 93 (122)
Q Consensus 85 ~rd~vPC~~ 93 (122)
|-|-|||..
T Consensus 11 kmdgvpcce 19 (32)
T d1clvi_ 11 KMDGVPCCE 19 (32)
T ss_dssp HHHCCCBCT
T ss_pred cCCCccccC
Confidence 446788875
No 3
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.66 E-value=52 Score=19.21 Aligned_cols=18 Identities=17% Similarity=0.445 Sum_probs=12.4
Q ss_pred cCCCCCCCCCCCCcCCCC
Q 033302 86 RNSVPCSRRGASYYNCRA 103 (122)
Q Consensus 86 rd~vPC~~rG~sYynC~p 103 (122)
.+++.|...|.+-..|..
T Consensus 16 ~~R~dCg~~git~~~C~~ 33 (59)
T d1e9ta_ 16 KDRVDCGYPHVTPKECNN 33 (59)
T ss_dssp TTCCCCCCSSCCTTTTTT
T ss_pred cccccCCCCCCCHHHHhh
Confidence 346788877777666655
No 4
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=12.16 E-value=43 Score=17.08 Aligned_cols=14 Identities=43% Similarity=1.099 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCC
Q 033302 101 CRAGGQANPYSRGC 114 (122)
Q Consensus 101 C~p~~~aNPY~RGC 114 (122)
|.|..+--||+..|
T Consensus 1 cipsgqpcpynenc 14 (26)
T d1hvwa_ 1 CIPSGQPCPYNENC 14 (26)
T ss_dssp CBCTTSBCSSTTSB
T ss_pred CCCCCCcCCCCccc
Confidence 33444444555554
No 5
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=42 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.708 Sum_probs=9.6
Q ss_pred CCCCCCCCCCcc
Q 033302 105 GQANPYSRGCSA 116 (122)
Q Consensus 105 ~~aNPY~RGCs~ 116 (122)
=..+||+||+-.
T Consensus 97 W~~dp~~~GsYS 108 (109)
T d2dw4a3 97 WRADPWARGSYS 108 (109)
T ss_dssp TTTCTTTSSSCE
T ss_pred cCCCCccCEecC
Confidence 378999999853
No 6
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.24 E-value=36 Score=19.87 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.1
Q ss_pred CCCCCCCCCcc
Q 033302 106 QANPYSRGCSA 116 (122)
Q Consensus 106 ~aNPY~RGCs~ 116 (122)
..|||+||+-.
T Consensus 100 ~~dp~~~GsYs 110 (112)
T d2v5za2 100 CEEQYSGGCYT 110 (112)
T ss_dssp GGCTTTCSSSC
T ss_pred CCCCccCcccc
Confidence 57999999854
No 7
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=8.01 E-value=57 Score=18.80 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=8.5
Q ss_pred CCCCCCCCCc
Q 033302 106 QANPYSRGCS 115 (122)
Q Consensus 106 ~aNPY~RGCs 115 (122)
..|||+||+-
T Consensus 101 ~~dp~~~GsY 110 (112)
T d1b5qa2 101 WSDRFYKGTF 110 (112)
T ss_dssp TTCTTTSSSE
T ss_pred CCCCCccccC
Confidence 6899999973
No 8
>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa sylvestris) [TaxId: 13555]}
Probab=6.41 E-value=93 Score=18.19 Aligned_cols=14 Identities=43% Similarity=1.058 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCcCC
Q 033302 87 NSVPCSRRGASYYNC 101 (122)
Q Consensus 87 d~vPC~~rG~sYynC 101 (122)
.+|||.. |.--|.|
T Consensus 6 gkvpcpd-gevgytc 19 (57)
T d1e0fi_ 6 GKVPCPD-GEVGYTC 19 (57)
T ss_dssp SSSBCCS-SSCSSCE
T ss_pred ccccCCC-Cceeeec
Confidence 4799984 5544544
No 9
>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}
Probab=6.27 E-value=57 Score=21.15 Aligned_cols=10 Identities=10% Similarity=-0.050 Sum_probs=7.6
Q ss_pred CCCCCCCCCc
Q 033302 106 QANPYSRGCS 115 (122)
Q Consensus 106 ~aNPY~RGCs 115 (122)
-.|||+.||.
T Consensus 31 G~g~yS~ggg 40 (118)
T d2p2ea1 31 GVGALSKVGV 40 (118)
T ss_dssp SCSGGGGSSC
T ss_pred CCCccccCCc
Confidence 4688888875
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=5.77 E-value=1e+02 Score=18.03 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhcCC
Q 033302 13 LAAIILAVHVASSSS 27 (122)
Q Consensus 13 ~~~~~l~~~~~~~~~ 27 (122)
++.+||.|++++...
T Consensus 8 VViaIIgILaaia~P 22 (158)
T d2pila_ 8 IVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333455555555443
Done!