BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033305
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352l
 pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352l
 pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352l
 pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352l
          Length = 566

 Score = 30.4 bits (67), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 18 AAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME 70
           A  RWK T+ L+V+         P  ++T+    P R  + +ALKDL  RME
Sbjct: 22 GAGLRWKHTSSLKVA-------NEPVLAFTQ--GSPERDALQKALKDLKGRME 65


>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352a
 pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352a
 pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352a
 pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase Mutant S352a
          Length = 566

 Score = 30.4 bits (67), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 18 AAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME 70
           A  RWK T+ L+V+         P  ++T+    P R  + +ALKDL  RME
Sbjct: 22 GAGLRWKHTSSLKVA-------NEPVLAFTQ--GSPERDALQKALKDLKGRME 65


>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase
 pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase
 pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase
 pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
          Dehydrogenase
          Length = 566

 Score = 30.4 bits (67), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 18 AAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME 70
           A  RWK T+ L+V+         P  ++T+    P R  + +ALKDL  RME
Sbjct: 22 GAGLRWKHTSSLKVA-------NEPVLAFTQ--GSPERDALQKALKDLKGRME 65


>pdb|1YG2|A Chain A, Structure Of The Vibrio Cholerae Virulence Activator Apha
          Length = 179

 Score = 28.9 bits (63), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 8   RVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKD 64
           +VY I     +A   W D      +VR++   K  ACS     + PYRL++ E +++
Sbjct: 67  KVYSITQAGRSALGEWFDQPTAHPTVRDEFSAKLMACSVQ--SAEPYRLQLAELVEE 121


>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
           Kinase From Penicillium Chrysogenum
 pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
           Kinase From Penicillium Chrysogenum
 pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Ternary Structure With Adp And Aps
 pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
 pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
           Chrysogenum: Structure With Aps Soaked Out Of One Dimer
          Length = 211

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 40  KTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKE 80
           + PA     +K+  Y L + +A+K + + ++ +GY+P  KE
Sbjct: 173 EAPANPEVHVKN--YELPVQDAVKQIIDYLDTKGYLPAKKE 211


>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
 pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
           From Penicillium Chrysogenum: Ternary Structure With Adp
           And Paps
          Length = 197

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 40  KTPACSWTEIKSHPYRLRINEALKDLFERMEQEGYVPTTKE 80
           + PA     +K+  Y L + +A+K + + ++ +GY+P  KE
Sbjct: 151 EAPANPEVHVKN--YELPVQDAVKQIIDYLDTKGYLPAKKE 189


>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
           Inhibitor
 pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
           Inhibitor
          Length = 321

 Score = 26.6 bits (57), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 64  DLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
           +L E +   G  P   + L  +++ + K +    SG F  V+  I  P+G T+++
Sbjct: 15  ELVEPLTPSGTAPNQAQ-LRILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKI 68


>pdb|2QQ5|A Chain A, Crystal Structure Of Human Sdr Family Member 1
          Length = 260

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 8   RVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI 49
           R+ V+++NAYA  +   +T       RNK   +TPA  W +I
Sbjct: 83  RLDVLVNNAYAGVQTILNT-------RNKAFWETPASMWDDI 117


>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
           Inactive State
 pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
           Inactive State
          Length = 368

 Score = 26.2 bits (56), Expect = 4.8,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 69  MEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLIN 120
           +E+EGY P T + L + E + K+         F ++   +  PDG  +  I+
Sbjct: 20  LEEEGYHPDTAKTLREAEKKIKELF-------FPVIVLDVWXPDGDGVNFID 64


>pdb|3FMS|A Chain A, Crystal Structure Of Tm0439, A Gntr Transcriptional
           Regulator
          Length = 209

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 63  KDLFERM---EQEGYVPTTKEALHDVEDEQKKNLLHYH 97
           K+L ER+   ++EG +   KE L +VE E  KNL  Y 
Sbjct: 170 KELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTYE 207


>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus
 pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus
 pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus
 pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus
 pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 2 MolASU
 pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 2 MolASU
 pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Reduced, 2 MolASU, WITH BOUND NADH
 pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Reduced, 2 MolASU, WITH BOUND NADH
 pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
          Resolution
 pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
          Resolution
 pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
          Resolution
 pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of
          Respiratory Complex I From Thermus Thermophilus,
          Oxidized, 4 MolASU, RE-Refined To 3.15 Angstrom
          Resolution
 pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
          Thermophilus
 pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
          Thermophilus
 pdb|2YBB|6 Chain 6, Fitted Model For Bovine  Mitochondrial Supercomplex
          I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
 pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I
          From Thermus Thermophilus
 pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I
          From Thermus Thermophilus
          Length = 181

 Score = 26.2 bits (56), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 4/26 (15%)

Query: 61 ALKDLFER----MEQEGYVPTTKEAL 82
          ALKDLFER    +E+EG + TT E L
Sbjct: 2  ALKDLFERDVQELEREGILFTTLEKL 27


>pdb|3SXY|A Chain A, Metal-Free Full-Length Structure Of Tm0439, A
           Metal-Binding Fcd Family Transcriptional Regulator
 pdb|3SXY|B Chain B, Metal-Free Full-Length Structure Of Tm0439, A
           Metal-Binding Fcd Family Transcriptional Regulator
          Length = 218

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 63  KDLFERM---EQEGYVPTTKEALHDVEDEQKKNLLHYH 97
           K+L ER+   ++EG +   KE L +VE E  KNL  Y 
Sbjct: 179 KELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTYE 216


>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
           Aeolicus
 pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
           Receiver Domain Dimer
 pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
           Receiver Domain Dimer
          Length = 121

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 69  MEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLIN 120
           +E+EGY P T + L + E + K+         F ++   +  PDG  +  I+
Sbjct: 21  LEEEGYHPDTAKTLREAEKKIKELF-------FPVIVLDVWMPDGDGVNFID 65


>pdb|3SXZ|A Chain A, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
 pdb|3SXZ|B Chain B, Metal-Free Fcd Domain Of Tm0439 A Putative Transcriptional
           Regulator
          Length = 140

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 63  KDLFERM---EQEGYVPTTKEALHDVEDEQKKNLLHY 96
           K+L ER+   ++EG +   KE L +VE E  KNL  Y
Sbjct: 104 KELIERIISGDKEGAIEKLKEHLKNVEAETIKNLYTY 140


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,563,620
Number of Sequences: 62578
Number of extensions: 128758
Number of successful extensions: 368
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 19
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)