BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033305
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 84/132 (63%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
++ NM YV++ N YA+ RWK+ A+LR+ +R KG++K PACSW E+K
Sbjct: 541 VDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDR 600
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
SHP +INE LK + E+ME+EGYV T LHDV++E K+ LL HS R A+ FG I+T
Sbjct: 601 SHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINT 660
Query: 111 PDGRTIRLINNL 122
G TIR+ N+
Sbjct: 661 EPGTTIRVTKNI 672
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
Y +LSN YA A RWKD R+R +R+KG+KK P CSW E K+HP+ I
Sbjct: 684 YTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEI 743
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+ L D +R++ GYVP T ALHDV+DE+K +LL HS + A+ +G ++TP G IR+
Sbjct: 744 YQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRI 803
Query: 119 INNL 122
NL
Sbjct: 804 TKNL 807
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 79/128 (61%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPY 54
N +YV+LSN YA++ RW D +LRV +R+KG+KK P SW EI++ HP
Sbjct: 611 NSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPE 670
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
+ I L++L RM++ GYV T LHDVE+E+K+ ++ YHS R A+ +G + GR
Sbjct: 671 KDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGR 730
Query: 115 TIRLINNL 122
IR+I NL
Sbjct: 731 PIRVIKNL 738
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS---------HPYRLRINE 60
YV+LSN YA+A RW + ++LRV ++ G+ K P SW I+ P+ RI E
Sbjct: 533 YVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCSRIYE 592
Query: 61 ALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRLIN 120
L+ L E++++ GY P + ALHDVEDEQK+ +L YHS R AI FG I+T +G + ++
Sbjct: 593 KLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMK 652
Query: 121 NL 122
NL
Sbjct: 653 NL 654
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 79/132 (59%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
I N YV ++N YAAA +W++ ++R ++ G+ K P SWTEIK
Sbjct: 517 IEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADT 576
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
SHP +I E L++L ++M++EGYVP T LHDVEDEQK+ L YHS + A+ F +ST
Sbjct: 577 SHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILST 636
Query: 111 PDGRTIRLINNL 122
+G I++ NL
Sbjct: 637 EEGTAIKVFKNL 648
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
YV LSN Y+ RW + A +R + KGMKK P SW E+ KSHP +I
Sbjct: 519 YVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKI 578
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L+DL M G+VPTT+ DVE+E+K+ +L YHS + A+ G IST G+ IR+
Sbjct: 579 YAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRV 638
Query: 119 INNL 122
+ NL
Sbjct: 639 VKNL 642
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
N YV+LSN YAA W + +R + + G+KK P CSW ++K SHP
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQ 649
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
+I E + ++ + M + G+ P ALHDVE+++++ +L HS + A+VFG ++TPDG
Sbjct: 650 IDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGT 709
Query: 115 TIRLINNL 122
+++I NL
Sbjct: 710 PLQVIKNL 717
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
N Y L+N Y+A +W++ A++R S+++ +KK SW E+K +HP
Sbjct: 616 NSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPE 675
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
+ I +K +++ +++ GYVP T LHD+E+E K+ +L +HS + AI FG ISTPD
Sbjct: 676 KNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKT 735
Query: 115 TIRLINNL 122
T+R++ NL
Sbjct: 736 TLRIMKNL 743
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 74/124 (59%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-----------IKSHPYRLRI 58
YV+L+N Y++A W +R +++ +G++K P CSW E SHP ++
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+ L+ L+ERM +EGYVP T LH+VE+++K+ LL HS + AI FG ++T G IR+
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843
Query: 119 INNL 122
NL
Sbjct: 844 AKNL 847
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 12/125 (9%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
Y++LSN +AA +W++ AR+R +R++G+KK ACSW E++ SHP +
Sbjct: 623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAV 682
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVE-DEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
L+DL + M + GYVP T LHDVE D K+++L HS + A+ FG + P G TIR
Sbjct: 683 YIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIR 742
Query: 118 LINNL 122
+ NL
Sbjct: 743 IFKNL 747
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS---------- 51
I N YV+LSN YA+A RW + A+ R + +KGMKK P CS EI S
Sbjct: 567 IEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDK 626
Query: 52 -HPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
HP I L+++ +E+ G+VP T E L ++E+E K+ L +HS + AI FG IST
Sbjct: 627 FHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIST 686
Query: 111 PDGRTIRLINNL 122
G + ++ NL
Sbjct: 687 KPGTKLTIVKNL 698
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINE--------- 60
YV+LSN YAAA +W + R ++ +KK P SW E+K+ + +++
Sbjct: 824 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELI 883
Query: 61 --ALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+KD+ ++QEGYVP T L DVE+E+K+ L+YHS + A+ FG +STP IR+
Sbjct: 884 YRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRV 943
Query: 119 INNL 122
I NL
Sbjct: 944 IKNL 947
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 73/133 (54%), Gaps = 12/133 (9%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE------------I 49
I N Y++LSN YA+ RW D A LR ++ + ++K+P CSWTE I
Sbjct: 530 IEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGI 589
Query: 50 KSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIS 109
SHP + I + L +L + + GY P ALHDV++E+K N L YHS R A+ + +
Sbjct: 590 NSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLK 649
Query: 110 TPDGRTIRLINNL 122
+G IR++ NL
Sbjct: 650 LSEGIPIRVMKNL 662
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 12/124 (9%)
Query: 11 VILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRIN 59
V++SN +A RW D ++R ++ GM+K P CSW E+ KSHP I
Sbjct: 794 VLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIY 853
Query: 60 EALKDLFERMEQE-GYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
E L ++ ++E+E GYV TK LH+V++ +K +LH HS R AI +G + TPD +R+
Sbjct: 854 EKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRI 913
Query: 119 INNL 122
NL
Sbjct: 914 TKNL 917
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------K 50
I+ +N YV LSN YAAAR W A +RV ++ KG+ K CSW E+ K
Sbjct: 520 IDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDK 579
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
SHP I ++ + R+++ G+V +LHD+ DE+ + L HS R AI +G IST
Sbjct: 580 SHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLIST 639
Query: 111 PDGRTIRLINNL 122
P G +R+ NL
Sbjct: 640 PQGTPLRITKNL 651
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
YV+LSN YA + W++ A++R + + +KK P SW E+K SHP + +I
Sbjct: 701 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQI 760
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L+DL R++ GY P T L D++DE K+ +L HS R AI FG I+TP G + +
Sbjct: 761 YMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLI 820
Query: 119 INNL 122
I NL
Sbjct: 821 IKNL 824
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 4 LNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALK 63
L+++ V L + Y +KD ++ MK+ +WT + S R +N+ +
Sbjct: 125 LDDVSVGTSLVDTYMKGSNFKDGRKVF-----DEMKERNVVTWTTLISGYARNSMNDEVL 179
Query: 64 DLFERMEQEGYVPTT 78
LF RM+ EG P +
Sbjct: 180 TLFMRMQNEGTQPNS 194
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
YV LSN YA+ W + + +R+ ++ K ++K P CS +I SHP I
Sbjct: 480 YVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEI 539
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
N L ++ +++ GY P T + L ++E+E K+N+LHYHS + A FG IST G+ IR+
Sbjct: 540 NSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRI 599
Query: 119 INNL 122
+ NL
Sbjct: 600 VKNL 603
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
Y +LSN YA +++W +R +R++G+KK P CSW E+ SHP + +
Sbjct: 464 YTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEV 523
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
++ L L R+ GYVP T L D+E EQ ++ L +HS + A+ FG ++ P + IR+
Sbjct: 524 SKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583
Query: 119 INNL 122
NL
Sbjct: 584 RKNL 587
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPY 54
N YV+++N YA A +W+ RLR + +G++K P CSW EIK S+P
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPE 760
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
I L+ + RM +EGY P TK AL D E+ +K+ L HS + A+ G IS+ G+
Sbjct: 761 TENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGK 820
Query: 115 TIRLINNL 122
IR+ NL
Sbjct: 821 IIRVTKNL 828
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------K 50
++ +N Y++LS+ YA A RWKD R+R+ ++N+G+ K P S E+ +
Sbjct: 485 LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDE 544
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
HP R +I E L +L ++ + GYV T HDV++E+K+ L HS + AI FG ++T
Sbjct: 545 EHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNT 604
Query: 111 PDGRTIRLINNL 122
G T+ ++ NL
Sbjct: 605 VPGSTVNVVKNL 616
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
YV+LSN YA+ +RW D ++R + G+KK P S E+ KSHP I
Sbjct: 429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAI 488
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
LK++ R+ EGYVP DVE+E+K+N + YHS + AI F ISTP+ I +
Sbjct: 489 YAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITV 548
Query: 119 INNL 122
+ NL
Sbjct: 549 VKNL 552
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINE- 60
I+ N+ YV+L+N +A+A+RW+D + +R S+R+K +KK SW E K ++ ++ +
Sbjct: 476 IDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDR 535
Query: 61 ----------ALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
LK+L M+ +GY P T LHD+++E+K++ L HS + A+ F +
Sbjct: 536 SQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMIL 595
Query: 111 PDGRTIRLINNL 122
P+G IR+I NL
Sbjct: 596 PEGAPIRIIKNL 607
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 11/133 (8%)
Query: 1 MINLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI----------- 49
M L + YV +SN YAAA W+ ++ ++R +G+KK PA SW E+
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709
Query: 50 KSHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIS 109
++HP I + +L +E+EGY P T + DV+++ K L YHS R A+ F IS
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769
Query: 110 TPDGRTIRLINNL 122
TP+G I ++ NL
Sbjct: 770 TPEGCPIVVMKNL 782
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPYRLRI 58
+VIL N YA+ RW D AR+R ++ G+KK PACSW EI++ HP R I
Sbjct: 467 HVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEI 526
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+++ ++++ GYVP T + V+ ++++ L YHS + A+ F ++TP G TI +
Sbjct: 527 ARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHI 586
Query: 119 INNL 122
N+
Sbjct: 587 KKNI 590
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 72/124 (58%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
YV+LSN YA+A RW D A++R+S++ KG++K P S +I+ SHP I
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNI 735
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L ++ +R G+VP L DV++++K +L HS + A+ +G IS+ G TIR+
Sbjct: 736 EAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRI 795
Query: 119 INNL 122
+ NL
Sbjct: 796 VKNL 799
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-----------IKSHPYRLRI 58
YVILSN YA+A RW D +R + K + K P SW + ++HP R +
Sbjct: 462 YVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEV 521
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+K++ +M+Q GYVP L+DV++EQK+ +L HS + A+ FG I+T +G IR+
Sbjct: 522 LAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRV 581
Query: 119 INNL 122
NL
Sbjct: 582 FKNL 585
>sp|Q9FK93|PP406_ARATH Pentatricopeptide repeat-containing protein At5g39680
OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1
Length = 710
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Query: 5 NNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HP 53
N+ VYV+LSN +A +R W+ A++R + N+G+KK P SW I++ HP
Sbjct: 539 NDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHP 598
Query: 54 YRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDG 113
I +K++ +++ GY P A HDV++EQ+++ L YHS + A+ +G I TP+
Sbjct: 599 EITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEK 658
Query: 114 RTIRLINNL 122
+ + N+
Sbjct: 659 SPLYVTKNV 667
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
YV+LSN YA A RW++ +R +++KG+KK P S E+ +SHP I
Sbjct: 515 YVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEI 574
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPD-----G 113
L L ++M++ GYVP ++ ALHDVE+E K+ L HS + AIVF ++T +
Sbjct: 575 YRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSN 634
Query: 114 RTIRLINNL 122
TIR+ NL
Sbjct: 635 NTIRITKNL 643
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS---------- 51
+N N YV L+N YA+ RW+D AR+R ++ + K P SW EI++
Sbjct: 482 LNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDR 541
Query: 52 -HPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
HP I++ LK+L ++M+ GY P + ALH+VE+EQK+ LL +HS + A+ FG I
Sbjct: 542 IHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKL 601
Query: 111 PDGRTIRLINNL 122
P G I++ NL
Sbjct: 602 PQGSQIQVFKNL 613
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPY 54
N YV+LSN YA + W + + +R S+++KG++K P CS E+ KSHP
Sbjct: 442 NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPK 501
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
+I+ KD+ R+ GY T + D+++E+K++ L HS + AI FG +S +
Sbjct: 502 YTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDV 561
Query: 115 TIRLINNL 122
IR++ NL
Sbjct: 562 PIRIVKNL 569
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
Y +LS+ YA+ +W A+LR +R K +KK P SW + K S PY +I
Sbjct: 577 YTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQI 636
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L++L ++ GY P T HDVE+ K +L+YHS R AI FG I P G+ IR+
Sbjct: 637 YAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRV 696
Query: 119 INNL 122
NL
Sbjct: 697 GKNL 700
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------K 50
++ +N+ +V+LSN ++A R + A +R + + + + K P + EI +
Sbjct: 618 LDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQ 677
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
SHP I E L+ L +M + GY P T+ ALHDVE+E+++ ++ HS R AI FG I+T
Sbjct: 678 SHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIAT 737
Query: 111 PDGRTIRLINNL 122
G IR+I NL
Sbjct: 738 EPGTEIRIIKNL 749
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 11/132 (8%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI--KSHPYRL--- 56
+N+ N +YV+LSN YA+ ++ A++R ++ KG+ K P S EI K H +R
Sbjct: 458 LNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDR 517
Query: 57 ------RINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
I L+ + ER++ GYVP T L D+E+ +K+ L HS R AI +G IST
Sbjct: 518 EHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLIST 577
Query: 111 PDGRTIRLINNL 122
G +++ NL
Sbjct: 578 KPGSPLKIFKNL 589
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
+V+LSN YAAA +W ++R +R G KK A S E KSHP I
Sbjct: 418 HVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAI 477
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
E L ++ +++ + GYVP T HDVE E+K+ L +HS + AI FG I G IR+
Sbjct: 478 YEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRV 537
Query: 119 INNL 122
+ NL
Sbjct: 538 MKNL 541
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 14/135 (10%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
+ +NN +V+LSN YAA RWKD R+R + +K +KK P S+ E K
Sbjct: 404 MGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDK 463
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAI-- 108
SH I E + ++ ++ ++GYV T LHD+ +E+K+N L YHS + A+ +G +
Sbjct: 464 SHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMM 523
Query: 109 -STPDGRTIRLINNL 122
+ +R+INNL
Sbjct: 524 DGADEESPVRVINNL 538
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 11/125 (8%)
Query: 9 VYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPYRLR 57
+++ LSNAYAA R++D A+ R +R++G KK SW E ++ H
Sbjct: 421 MHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKE 480
Query: 58 INEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
I E L +L E ME+ GY+ T L +V+ ++K + YHS R AI FG I+ P R IR
Sbjct: 481 IYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIR 540
Query: 118 LINNL 122
++ NL
Sbjct: 541 VMKNL 545
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
YV+L+N YA AR+W++ A +R S+R K ++K P CSW E+K SHP +
Sbjct: 552 YVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREV 611
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNL---LHYHSGRFAIVFGAISTPDGRT 115
NE L+++ ++M++ GYV K A+ ++ + + L +HS + A+ FG +ST DG
Sbjct: 612 NEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEE 671
Query: 116 IRLINNL 122
+ ++ NL
Sbjct: 672 LVVVKNL 678
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPYRLRI 58
+V+LSN YA+A +W+ +R KG++KTP S E+ ++HP +
Sbjct: 657 HVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEM 716
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L L +++ GYVP + L DVED++K+++L HS R AI F I+TP TIR+
Sbjct: 717 YRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRI 776
Query: 119 INNL 122
NL
Sbjct: 777 FKNL 780
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 5 NNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE------------IKSH 52
+N YV+LS+ A+ +W D A +R ++R + K P CSW E IK+H
Sbjct: 532 DNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNH 591
Query: 53 PYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPD 112
P + I L+ + + GY P LHDV++E+K + L HS R A+ +G + P+
Sbjct: 592 PEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPE 651
Query: 113 GRTIRLINNL 122
G IR++ NL
Sbjct: 652 GVPIRVMKNL 661
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 74/132 (56%), Gaps = 12/132 (9%)
Query: 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK----------- 50
+N ++ +V+L+N Y AA W+ ++RVS+ +G++KTP CS EIK
Sbjct: 636 LNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGST 695
Query: 51 SHPYRLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAIST 110
+HP +I L+ L +++ GYVP T L VE++ K+ LL HS + AI FG ++T
Sbjct: 696 AHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNT 754
Query: 111 PDGRTIRLINNL 122
G TI + NL
Sbjct: 755 TAGTTIHVRKNL 766
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 11/128 (8%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS--HPYRL------- 56
N YV+LSN YA RW + +R + KG+ K P CS+ E++ H + +
Sbjct: 403 NSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQE 462
Query: 57 --RINEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGR 114
RI L ++ +R+ + GYV TKE L D+ ++ K+ L YHS + AI F + T G
Sbjct: 463 SERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGT 522
Query: 115 TIRLINNL 122
+R+I NL
Sbjct: 523 PVRIIKNL 530
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 67/125 (53%), Gaps = 12/125 (9%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSH--------PYRLRINEA 61
YV++SN YA A+ W + ++R ++ +G+KK CSW ++K Y R ++
Sbjct: 543 YVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAGGGYEFRNSDE 602
Query: 62 LK----DLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
K +L E +E+ GY P T LHDV++E K N + HS R A + I T +G IR
Sbjct: 603 YKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSLIHTGEGVPIR 662
Query: 118 LINNL 122
+ NL
Sbjct: 663 ITKNL 667
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
Y+++SN Y+ + W D AR R + KG+K+TP S E+K SHP I
Sbjct: 440 YLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEI 499
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+ L + +++ EGY P + L +V++E+KK L HS + AI FG + TP G I++
Sbjct: 500 YKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKI 559
Query: 119 INNL 122
NL
Sbjct: 560 ARNL 563
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 71/124 (57%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRL-----------RI 58
YV+L++ YA A+ W + R++ + ++G++K P W E++ Y +I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQI 550
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+ L L E M+++GY+P TK L+++E E+K+ ++ HS + A+ FG I+T G IR+
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRI 610
Query: 119 INNL 122
NL
Sbjct: 611 TKNL 614
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 12/125 (9%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRL-----------RI 58
YVILSN YA ++W+ LR ++++ K P CS E+ + + ++
Sbjct: 436 YVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKL 495
Query: 59 NEALKDLFERMEQEGYVPTTKEALH-DVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
+ AL ++ + ++ GYVP T +H ++ D++K+ L YHS + AI FG ++TP G TIR
Sbjct: 496 HRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIR 555
Query: 118 LINNL 122
++ NL
Sbjct: 556 VVKNL 560
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS------------HPYRLR 57
Y++LSN YA+A W R+R ++ KG+KKTPA SW K+ HP +
Sbjct: 490 YILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNK 549
Query: 58 INEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIR 117
I + L++L ER+ GY P +DV D K+ +L H+ + A+ F ++T TI
Sbjct: 550 IQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTIT 609
Query: 118 LINNL 122
++ NL
Sbjct: 610 IMKNL 614
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 12/129 (9%)
Query: 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEI-----------KSHPY 54
N +V+LSN YA +W++ + LR +R G+KK P CS EI +HP
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626
Query: 55 RLRINEALKDLFERMEQEGYVPTTKEALHDVEDEQ-KKNLLHYHSGRFAIVFGAISTPDG 113
++ L ++ E+++ GY P + L +E+E+ K+ L+ HS + AI +G IST
Sbjct: 627 SEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAP 686
Query: 114 RTIRLINNL 122
+ IR+I NL
Sbjct: 687 KVIRVIKNL 695
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIK-----------SHPYRLRI 58
+V+LSN YAA ++W++ A+ R +R+ +KK SW +IK HP I
Sbjct: 469 HVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREI 528
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
L +L + + GY P+ + LHDVE +K+ LL HS + A+VFG + P+ +R+
Sbjct: 529 CSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRI 588
Query: 119 INNL 122
+ NL
Sbjct: 589 MKNL 592
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFE-- 67
YV+LSN YA +W+D ++R + ++K CSW E+ + + E D FE
Sbjct: 804 YVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEI 863
Query: 68 ---------RMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
++ + GY P T HD+ +E+K L HS + A+ +G I T +G TIR+
Sbjct: 864 KSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRV 923
Query: 119 INNL 122
NL
Sbjct: 924 YKNL 927
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 66/124 (53%), Gaps = 11/124 (8%)
Query: 10 YVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTEIKS-----------HPYRLRI 58
YV+LSN YA +++W R ++ KG+KK P SW E+K+ HP I
Sbjct: 898 YVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEI 957
Query: 59 NEALKDLFERMEQEGYVPTTKEALHDVEDEQKKNLLHYHSGRFAIVFGAISTPDGRTIRL 118
+E +DL +R + GYV L++++ EQK ++ HS + AI FG +S P I +
Sbjct: 958 HEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINV 1017
Query: 119 INNL 122
+ NL
Sbjct: 1018 MKNL 1021
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,160,347
Number of Sequences: 539616
Number of extensions: 1630504
Number of successful extensions: 6169
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5877
Number of HSP's gapped (non-prelim): 218
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)