Query 033305
Match_columns 122
No_of_seqs 170 out of 1443
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3spa_A Mtrpol, DNA-directed RN 91.2 0.052 1.8E-06 46.9 0.7 87 6-93 164-251 (1134)
2 3bee_A Putative YFRE protein; 89.4 0.33 1.1E-05 29.3 3.1 35 2-36 38-72 (93)
3 4g26_A Pentatricopeptide repea 86.3 0.39 1.3E-05 37.6 2.6 34 6-39 104-137 (501)
4 3ma5_A Tetratricopeptide repea 85.5 0.51 1.7E-05 27.9 2.3 26 3-28 3-28 (100)
5 3ma5_A Tetratricopeptide repea 82.7 1.1 3.9E-05 26.3 3.1 30 2-31 36-65 (100)
6 4ga2_A E3 SUMO-protein ligase 81.0 2.1 7.2E-05 27.1 4.1 30 2-31 60-89 (150)
7 3rkv_A Putative peptidylprolyl 80.2 3.3 0.00011 26.1 4.9 27 3-29 93-119 (162)
8 2kat_A Uncharacterized protein 79.8 2.1 7.3E-05 25.3 3.6 31 1-31 13-43 (115)
9 4ga2_A E3 SUMO-protein ligase 79.7 1 3.5E-05 28.7 2.2 34 2-35 26-60 (150)
10 3gyz_A Chaperone protein IPGC; 77.5 1.9 6.5E-05 27.9 3.0 26 3-28 66-91 (151)
11 2xcb_A PCRH, regulatory protei 77.1 2.1 7.2E-05 26.6 3.1 26 3-28 82-107 (142)
12 4gco_A Protein STI-1; structur 75.7 1.5 5.1E-05 27.1 2.1 26 3-28 43-68 (126)
13 4gcn_A Protein STI-1; structur 75.5 1.1 3.8E-05 27.7 1.4 29 2-30 37-65 (127)
14 2xpi_A Anaphase-promoting comp 75.4 1.4 4.7E-05 33.7 2.1 24 8-31 517-540 (597)
15 3vtx_A MAMA; tetratricopeptide 75.3 1.6 5.5E-05 28.0 2.2 32 2-33 34-65 (184)
16 2vgx_A Chaperone SYCD; alterna 74.5 2.6 8.9E-05 26.7 3.0 26 3-28 85-110 (148)
17 2kck_A TPR repeat; tetratricop 74.1 2 6.7E-05 24.5 2.2 31 2-32 1-31 (112)
18 1hxi_A PEX5, peroxisome target 73.2 2.5 8.4E-05 25.8 2.6 29 2-30 46-74 (121)
19 3gyz_A Chaperone protein IPGC; 73.1 2.6 8.8E-05 27.3 2.8 28 2-29 31-58 (151)
20 3k9i_A BH0479 protein; putativ 73.1 1.8 6.2E-05 25.9 1.9 33 3-35 23-56 (117)
21 4gco_A Protein STI-1; structur 72.3 1.5 5.1E-05 27.1 1.4 28 2-29 76-103 (126)
22 3vtx_A MAMA; tetratricopeptide 71.3 2.1 7.3E-05 27.3 2.1 26 3-28 103-128 (184)
23 3upv_A Heat shock protein STI1 70.9 3.3 0.00011 24.8 2.8 26 3-28 34-59 (126)
24 2l6j_A TPR repeat-containing p 70.8 3.4 0.00012 23.7 2.8 30 2-31 33-62 (111)
25 2kat_A Uncharacterized protein 70.5 3 0.0001 24.6 2.5 30 2-31 48-77 (115)
26 1hxi_A PEX5, peroxisome target 70.2 1.2 4.1E-05 27.3 0.6 30 2-31 80-109 (121)
27 2kc7_A BFR218_protein; tetratr 69.2 4.6 0.00016 22.9 3.1 30 2-31 29-59 (99)
28 4g26_A Pentatricopeptide repea 67.9 3.9 0.00013 31.9 3.2 33 7-39 175-207 (501)
29 2pl2_A Hypothetical conserved 67.8 5.3 0.00018 26.7 3.5 30 1-30 33-62 (217)
30 2vgx_A Chaperone SYCD; alterna 67.4 4.1 0.00014 25.7 2.8 30 2-31 50-79 (148)
31 3upv_A Heat shock protein STI1 67.0 4.4 0.00015 24.1 2.8 25 4-28 69-93 (126)
32 3urz_A Uncharacterized protein 66.9 2.8 9.4E-05 28.0 1.9 30 2-31 83-112 (208)
33 3q49_B STIP1 homology and U bo 66.7 4.5 0.00015 24.2 2.8 26 3-28 39-64 (137)
34 2r5s_A Uncharacterized protein 66.7 4.1 0.00014 26.1 2.7 30 2-31 103-132 (176)
35 2kck_A TPR repeat; tetratricop 66.4 5.8 0.0002 22.3 3.2 30 2-31 35-64 (112)
36 3sz7_A HSC70 cochaperone (SGT) 65.8 3.5 0.00012 26.0 2.2 26 3-28 41-66 (164)
37 2pl2_A Hypothetical conserved 65.6 3.4 0.00012 27.7 2.2 32 2-33 113-144 (217)
38 2lni_A Stress-induced-phosphop 65.5 5 0.00017 23.5 2.8 24 5-28 14-37 (133)
39 2xcb_A PCRH, regulatory protei 65.4 6.3 0.00022 24.2 3.4 30 2-31 47-76 (142)
40 3q49_B STIP1 homology and U bo 63.8 5.5 0.00019 23.8 2.8 28 2-29 4-31 (137)
41 1na3_A Designed protein CTPR2; 63.8 8.1 0.00028 21.1 3.4 21 8-28 10-30 (91)
42 3qou_A Protein YBBN; thioredox 63.3 2.9 0.0001 29.5 1.6 30 2-31 146-175 (287)
43 3sz7_A HSC70 cochaperone (SGT) 62.6 4.3 0.00015 25.6 2.1 27 3-29 75-101 (164)
44 1elw_A TPR1-domain of HOP; HOP 62.1 10 0.00035 21.4 3.7 28 3-30 34-61 (118)
45 2r5s_A Uncharacterized protein 61.1 3.2 0.00011 26.7 1.3 30 2-31 35-64 (176)
46 2vyi_A SGTA protein; chaperone 61.1 9 0.00031 22.0 3.4 25 3-27 42-66 (131)
47 1na0_A Designed protein CTPR3; 60.0 9.8 0.00034 21.7 3.4 26 3-28 39-64 (125)
48 1elw_A TPR1-domain of HOP; HOP 59.5 9 0.00031 21.6 3.1 23 7-29 4-26 (118)
49 3k9i_A BH0479 protein; putativ 59.0 3.2 0.00011 24.8 0.9 29 2-30 56-84 (117)
50 2lni_A Stress-induced-phosphop 58.8 10 0.00035 22.0 3.4 27 2-28 45-71 (133)
51 1elr_A TPR2A-domain of HOP; HO 58.2 9.4 0.00032 22.0 3.1 30 2-31 33-62 (131)
52 3ieg_A DNAJ homolog subfamily 58.1 29 0.001 23.8 6.1 21 10-30 275-295 (359)
53 3mkr_A Coatomer subunit epsilo 57.7 7.5 0.00026 27.5 2.9 27 3-29 97-123 (291)
54 2e2e_A Formate-dependent nitri 56.3 11 0.00039 23.7 3.4 30 2-31 39-68 (177)
55 2c2l_A CHIP, carboxy terminus 56.0 11 0.00038 26.3 3.6 30 1-30 66-95 (281)
56 1na0_A Designed protein CTPR3; 55.6 13 0.00044 21.1 3.4 28 2-29 3-31 (125)
57 2xev_A YBGF; tetratricopeptide 55.4 13 0.00044 21.8 3.4 20 8-27 40-59 (129)
58 2e2e_A Formate-dependent nitri 55.1 12 0.00041 23.6 3.4 29 3-31 111-139 (177)
59 2fo7_A Synthetic consensus TPR 54.0 12 0.00041 21.4 3.0 25 4-28 32-56 (136)
60 2vyi_A SGTA protein; chaperone 53.9 14 0.00048 21.1 3.4 27 3-29 8-34 (131)
61 2y4t_A DNAJ homolog subfamily 53.4 2.2 7.4E-05 31.2 -0.6 42 1-42 357-412 (450)
62 1w3b_A UDP-N-acetylglucosamine 52.8 15 0.0005 26.3 3.8 26 3-28 301-326 (388)
63 3qou_A Protein YBBN; thioredox 52.3 7.6 0.00026 27.3 2.2 33 2-34 214-247 (287)
64 2xev_A YBGF; tetratricopeptide 51.8 18 0.00063 21.0 3.7 22 8-29 77-98 (129)
65 3as5_A MAMA; tetratricopeptide 51.8 16 0.00056 22.3 3.6 30 2-31 37-66 (186)
66 1ihg_A Cyclophilin 40; ppiase 51.3 37 0.0013 24.9 6.0 24 5-28 271-294 (370)
67 2fbn_A 70 kDa peptidylprolyl i 50.5 29 0.001 22.2 4.8 27 3-29 118-144 (198)
68 2dba_A Smooth muscle cell asso 49.7 15 0.0005 21.8 3.0 22 7-28 65-86 (148)
69 3u4t_A TPR repeat-containing p 49.4 14 0.00048 24.6 3.1 32 2-33 32-63 (272)
70 3hym_B Cell division cycle pro 49.2 17 0.00059 24.8 3.6 30 2-31 188-217 (330)
71 3hym_B Cell division cycle pro 49.1 18 0.0006 24.7 3.7 28 2-29 120-147 (330)
72 3as5_A MAMA; tetratricopeptide 48.6 18 0.00061 22.1 3.4 26 3-28 106-131 (186)
73 4i17_A Hypothetical protein; T 48.3 14 0.00048 24.3 2.9 30 2-31 71-100 (228)
74 1xnf_A Lipoprotein NLPI; TPR, 48.3 17 0.00058 24.2 3.4 29 3-31 73-101 (275)
75 1hh8_A P67PHOX, NCF-2, neutrop 48.2 13 0.00046 23.9 2.8 31 2-32 66-96 (213)
76 3u4t_A TPR repeat-containing p 48.2 11 0.00038 25.2 2.4 30 2-31 103-132 (272)
77 1p5q_A FKBP52, FK506-binding p 47.6 26 0.00088 25.2 4.5 30 2-31 225-254 (336)
78 1w3b_A UDP-N-acetylglucosamine 47.6 12 0.00041 26.8 2.6 28 3-30 267-294 (388)
79 1vf6_A PALS-1, PALS1-associate 47.6 20 0.00067 21.4 3.1 19 57-75 4-22 (83)
80 1a17_A Serine/threonine protei 47.2 20 0.00067 21.8 3.4 28 3-30 77-104 (166)
81 1xnf_A Lipoprotein NLPI; TPR, 47.1 16 0.00054 24.3 3.1 33 2-34 106-138 (275)
82 2dba_A Smooth muscle cell asso 46.6 18 0.00061 21.5 3.0 31 2-32 94-124 (148)
83 2xpi_A Anaphase-promoting comp 46.5 16 0.00056 27.6 3.4 34 2-35 470-503 (597)
84 2q7f_A YRRB protein; TPR, prot 46.3 21 0.00073 23.1 3.6 27 3-29 53-79 (243)
85 2ho1_A Type 4 fimbrial biogene 44.3 23 0.00078 23.3 3.5 34 2-35 170-203 (252)
86 1a17_A Serine/threonine protei 43.8 23 0.00079 21.4 3.3 30 2-31 42-71 (166)
87 2vq2_A PILW, putative fimbrial 42.2 25 0.00084 22.4 3.4 25 4-28 39-63 (225)
88 4gyw_A UDP-N-acetylglucosamine 42.1 15 0.00052 30.0 2.7 26 3-28 107-132 (723)
89 2q7f_A YRRB protein; TPR, prot 41.9 32 0.0011 22.2 4.0 26 3-28 155-180 (243)
90 3ieg_A DNAJ homolog subfamily 41.6 23 0.00079 24.3 3.3 28 2-29 183-210 (359)
91 2hr2_A Hypothetical protein; a 41.5 15 0.00053 24.3 2.2 30 1-30 92-125 (159)
92 2gw1_A Mitochondrial precursor 41.3 15 0.00051 27.0 2.4 32 2-33 68-99 (514)
93 1kt0_A FKBP51, 51 kDa FK506-bi 41.2 35 0.0012 25.7 4.5 30 2-31 346-375 (457)
94 4g1t_A Interferon-induced prot 41.0 9.4 0.00032 28.1 1.2 30 2-31 425-454 (472)
95 2ho1_A Type 4 fimbrial biogene 40.3 26 0.0009 23.0 3.4 26 4-29 68-93 (252)
96 1fch_A Peroxisomal targeting s 39.6 27 0.00092 24.3 3.5 27 3-29 94-120 (368)
97 4eqf_A PEX5-related protein; a 39.4 30 0.001 24.3 3.7 29 3-31 277-305 (365)
98 3uq3_A Heat shock protein STI1 38.5 30 0.001 22.5 3.4 31 2-32 168-198 (258)
99 2gw1_A Mitochondrial precursor 37.7 46 0.0016 24.3 4.6 32 2-33 299-330 (514)
100 3urz_A Uncharacterized protein 37.5 9.8 0.00034 25.1 0.8 30 2-31 33-78 (208)
101 3uq3_A Heat shock protein STI1 37.1 32 0.0011 22.3 3.4 30 2-31 202-231 (258)
102 2h6f_A Protein farnesyltransfe 37.0 20 0.00067 26.7 2.4 28 2-29 195-222 (382)
103 2vq2_A PILW, putative fimbrial 37.0 29 0.00098 22.0 3.0 26 4-29 144-169 (225)
104 2vsy_A XCC0866; transferase, g 36.8 29 0.00098 26.6 3.4 28 2-29 52-79 (568)
105 2y4t_A DNAJ homolog subfamily 36.5 36 0.0012 24.5 3.8 31 3-33 173-203 (450)
106 2c2l_A CHIP, carboxy terminus 36.4 31 0.0011 24.0 3.3 30 2-31 33-62 (281)
107 1zu2_A Mitochondrial import re 35.5 9.7 0.00033 25.3 0.5 28 2-29 75-113 (158)
108 4eqf_A PEX5-related protein; a 35.5 33 0.0011 24.1 3.4 27 3-29 95-121 (365)
109 1wao_1 Serine/threonine protei 35.4 23 0.00077 27.1 2.6 28 2-29 69-96 (477)
110 4abn_A Tetratricopeptide repea 35.0 18 0.0006 27.5 1.9 30 2-31 132-161 (474)
111 4gyw_A UDP-N-acetylglucosamine 34.1 19 0.00064 29.5 2.0 28 2-29 72-99 (723)
112 3mkr_A Coatomer subunit epsilo 33.6 36 0.0012 23.9 3.3 32 4-35 127-158 (291)
113 3qwp_A SET and MYND domain-con 33.0 26 0.0009 26.6 2.6 55 8-70 372-427 (429)
114 3fp2_A TPR repeat-containing p 32.9 33 0.0011 25.4 3.1 28 3-30 55-82 (537)
115 1fch_A Peroxisomal targeting s 32.6 39 0.0013 23.5 3.4 30 3-32 247-276 (368)
116 3cv0_A Peroxisome targeting si 32.2 41 0.0014 22.7 3.4 27 3-29 236-262 (327)
117 3qww_A SET and MYND domain-con 31.9 46 0.0016 25.4 3.8 30 2-31 332-364 (433)
118 3cv0_A Peroxisome targeting si 31.8 42 0.0014 22.7 3.4 30 3-32 202-231 (327)
119 2if4_A ATFKBP42; FKBP-like, al 30.2 22 0.00077 25.6 1.7 30 2-31 259-288 (338)
120 3qky_A Outer membrane assembly 29.2 43 0.0015 22.4 3.0 28 3-30 45-75 (261)
121 2ond_A Cleavage stimulation fa 28.9 52 0.0018 22.9 3.5 30 2-31 94-123 (308)
122 3fp2_A TPR repeat-containing p 27.9 50 0.0017 24.4 3.4 32 2-33 457-488 (537)
123 3u64_A Protein TP_0956; tetrat 27.7 24 0.00081 26.1 1.5 31 1-31 191-228 (301)
124 1wy6_A Hypothetical protein ST 27.5 64 0.0022 21.6 3.4 36 4-39 122-157 (172)
125 3n71_A Histone lysine methyltr 27.4 39 0.0013 26.3 2.7 60 3-70 386-449 (490)
126 4g1t_A Interferon-induced prot 27.2 32 0.0011 25.1 2.2 30 2-31 329-358 (472)
127 2pzi_A Probable serine/threoni 27.2 24 0.00083 28.2 1.6 30 2-31 529-558 (681)
128 3qky_A Outer membrane assembly 26.5 62 0.0021 21.6 3.4 32 2-33 10-41 (261)
129 2vsy_A XCC0866; transferase, g 25.3 44 0.0015 25.6 2.7 30 2-31 18-47 (568)
130 2h6f_A Protein farnesyltransfe 25.2 52 0.0018 24.4 3.0 29 2-30 161-189 (382)
131 2pk8_A Uncharacterized protein 25.0 70 0.0024 19.6 3.0 25 56-80 16-40 (103)
132 1ouv_A Conserved hypothetical 24.5 54 0.0019 21.9 2.8 28 3-30 2-29 (273)
133 2bn5_A PSI; nuclear protein, s 24.1 48 0.0016 16.1 1.7 25 12-36 7-31 (33)
134 2pzi_A Probable serine/threoni 23.6 68 0.0023 25.6 3.6 27 3-29 429-455 (681)
135 2yhc_A BAMD, UPF0169 lipoprote 23.5 83 0.0028 20.6 3.6 34 3-36 177-213 (225)
136 1wao_1 Serine/threonine protei 23.1 40 0.0014 25.7 2.1 29 2-30 35-63 (477)
137 1zbp_A Hypothetical protein VP 22.4 50 0.0017 24.0 2.3 27 3-29 27-53 (273)
138 3spa_A Mtrpol, DNA-directed RN 21.6 73 0.0025 27.9 3.4 34 6-39 199-233 (1134)
139 3nf1_A KLC 1, kinesin light ch 21.5 51 0.0017 22.1 2.2 30 4-33 24-53 (311)
140 4abn_A Tetratricopeptide repea 20.2 55 0.0019 24.7 2.3 31 2-32 250-283 (474)
No 1
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.18 E-value=0.052 Score=46.86 Aligned_cols=87 Identities=14% Similarity=0.217 Sum_probs=53.5
Q ss_pred CchhHHHHHHHHHHcCCChhHHHHHHHHhccCCCCCCceeEEE-ecccchhhhhHHHHHHHHHHHHhcCcccCCCccccc
Q 033305 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMKKTPACSWTE-IKSHPYRLRINEALKDLFERMEQEGYVPTTKEALHD 84 (122)
Q Consensus 6 ~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~k~~g~S~ie-v~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~ 84 (122)
|...|..|.+.|+..|++++|.++...|++.|+.-. -.+|-. ++..-......+...++..+|...|+.||...-..-
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l 242 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence 456799999999999999999999999999998521 111110 000000111122334678899999999985432223
Q ss_pred cchHhhhhh
Q 033305 85 VEDEQKKNL 93 (122)
Q Consensus 85 ~~ee~~~~~ 93 (122)
+..++++.+
T Consensus 243 l~~~eR~~v 251 (1134)
T 3spa_A 243 LSEEDRATV 251 (1134)
T ss_dssp CCHHHHHHH
T ss_pred cChhhHHHH
Confidence 444444433
No 2
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.38 E-value=0.33 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhcc
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRNK 36 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~ 36 (122)
++|.++.+..+|.++|...|++++|......+-+.
T Consensus 38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 58999999999999999999999999988777543
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=86.34 E-value=0.39 Score=37.64 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=26.8
Q ss_pred CchhHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305 6 NMRVYVILSNAYAAARRWKDTARLRVSVRNKGMK 39 (122)
Q Consensus 6 ~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~ 39 (122)
|...|..|.+.|+..|++++|.++...|+..|+.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 3556778888888888888888888888887774
No 4
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.48 E-value=0.51 Score=27.94 Aligned_cols=26 Identities=4% Similarity=-0.127 Sum_probs=13.7
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..+..++.+|...|++++|..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~ 28 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALA 28 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555555555555555543
No 5
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=82.70 E-value=1.1 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=26.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-+
T Consensus 36 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 36 TDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 579999999999999999999999987543
No 6
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.96 E-value=2.1 Score=27.13 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=24.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-+
T Consensus 60 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 60 VQERDPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 578888888888888888888888887543
No 7
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=80.18 E-value=3.3 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=16.5
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++.+|..++.+|...|++++|...
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 566666666666666666666665553
No 8
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=79.76 E-value=2.1 Score=25.32 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 1 MINLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+++|.++..|..++.+|...|++++|...-.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 43 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLR 43 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3679999999999999999999999987643
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=79.73 E-value=1 Score=28.68 Aligned_cols=34 Identities=6% Similarity=0.039 Sum_probs=26.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHH-HHHHHhc
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTAR-LRVSVRN 35 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~-~r~~m~~ 35 (122)
.+|+++..+..|+++|...|++++|.+ .++.++-
T Consensus 26 ~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~ 60 (150)
T 4ga2_A 26 SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV 60 (150)
T ss_dssp SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677788899999999999998887 4666664
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=77.50 E-value=1.9 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=12.8
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..|+.+|...|++++|..
T Consensus 66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHccHHHHHH
Confidence 44455545555555555555544443
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=77.10 E-value=2.1 Score=26.57 Aligned_cols=26 Identities=8% Similarity=0.033 Sum_probs=13.5
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|.+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555555555555555544
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=75.71 E-value=1.5 Score=27.12 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=14.3
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|..
T Consensus 43 ~p~~~~~~~~~~~~~~~~~~~~~A~~ 68 (126)
T 4gco_A 43 DPENAILYSNRAACLTKLMEFQRALD 68 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHhhHHHhhccHHHHHH
Confidence 45555555555555555555555443
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=75.52 E-value=1.1 Score=27.66 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
++|.++..|.-++.+|...|++++|...-
T Consensus 37 ~~p~~~~~~~nlg~~~~~~~~~~~A~~~~ 65 (127)
T 4gcn_A 37 LDPSNITFYNNKAAVYFEEKKFAECVQFC 65 (127)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 58999999999999999999999998753
No 14
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=75.37 E-value=1.4 Score=33.72 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHcCCChhHHHHHH
Q 033305 8 RVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 8 ~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
..|..+..+|...|++++|.+.-+
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344455555555555555554433
No 15
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=75.27 E-value=1.6 Score=27.96 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++.+|..++.+|...|+++++.......
T Consensus 34 ~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 34 ADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 57888888889999999999998887764443
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=74.48 E-value=2.6 Score=26.70 Aligned_cols=26 Identities=4% Similarity=0.047 Sum_probs=13.5
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555555555555555544
No 17
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=74.05 E-value=2 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
++|.++..|..++.+|...|++++|...-..
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 31 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEK 31 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5789999999999999999999998876443
No 18
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=73.16 E-value=2.5 Score=25.83 Aligned_cols=29 Identities=7% Similarity=-0.161 Sum_probs=25.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
++|.++..|..++.+|...|++++|...-
T Consensus 46 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 46 KEPEREEAWRSLGLTQAENEKDGLAIIAL 74 (121)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47999999999999999999999988753
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=73.14 E-value=2.6 Score=27.29 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=18.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|+++..+..++..|...|++++|...
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 58 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVF 58 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666666666677777777666654
No 20
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=73.09 E-value=1.8 Score=25.90 Aligned_cols=33 Identities=9% Similarity=0.254 Sum_probs=22.0
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH-HHHHhc
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL-RVSVRN 35 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~-r~~m~~ 35 (122)
+|.++..|..|+.+|...|++++|... ++.++.
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355666677777777777777777663 455554
No 21
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=72.33 E-value=1.5 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=17.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.++.+|..++.+|...|++++|.+.
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 3566666666666666666666666554
No 22
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=71.35 E-value=2.1 Score=27.35 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=13.9
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..+..++.+|...|++++|..
T Consensus 103 ~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 103 NTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCchhHHH
Confidence 45555555555555555555555543
No 23
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=70.87 E-value=3.3 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=15.8
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|..
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~ 59 (126)
T 3upv_A 34 APEDARGYSNRAAALAKLMSFPEAIA 59 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHH
Confidence 45566666666666666666665553
No 24
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=70.79 E-value=3.4 Score=23.66 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 33 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 33 AQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 468888889999999999999999887543
No 25
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=70.47 E-value=3 Score=24.60 Aligned_cols=30 Identities=3% Similarity=-0.033 Sum_probs=26.2
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|.....
T Consensus 48 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 48 FDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 478888999999999999999999987644
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=70.24 E-value=1.2 Score=27.30 Aligned_cols=30 Identities=7% Similarity=0.008 Sum_probs=26.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..+..|+.+|...|++++|...-.
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 579999999999999999999999987543
No 27
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=69.24 E-value=4.6 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.0
Q ss_pred CCCCCch-hHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMR-VYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~-~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++. .|..++.+|...|++++|...-.
T Consensus 29 ~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 29 TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4688888 99999999999999999987644
No 28
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=67.85 E-value=3.9 Score=31.91 Aligned_cols=33 Identities=6% Similarity=-0.060 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305 7 MRVYVILSNAYAAARRWKDTARLRVSVRNKGMK 39 (122)
Q Consensus 7 ~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~ 39 (122)
...|..|.+.|+..|++++|.++-..|++.++.
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ 207 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQ 207 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCC
Confidence 455777777888888888888887777776664
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.83 E-value=5.3 Score=26.70 Aligned_cols=30 Identities=7% Similarity=-0.140 Sum_probs=25.4
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 1 MINLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+++|.++..|..++.+|...|++++|...-
T Consensus 33 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 62 (217)
T 2pl2_A 33 KENPQDPEALYWLARTQLKLGLVNPALENG 62 (217)
T ss_dssp TTSSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 368999999999999999999999888753
No 30
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=67.43 E-value=4.1 Score=25.73 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=25.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 50 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 50 LDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 478888889999999999999998887543
No 31
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=66.97 E-value=4.4 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=11.3
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
|.++..|..++.+|...|++++|..
T Consensus 69 p~~~~~~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 69 PNFVRAYIRKATAQIAVKEYASALE 93 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 4444444444444444444444443
No 32
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=66.92 E-value=2.8 Score=27.96 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 579999999999999999999999988644
No 33
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=66.69 E-value=4.5 Score=24.20 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=17.4
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|..
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (137)
T 3q49_B 39 NPLVAVYYTNRALCYLKMQQPEQALA 64 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhcCHHHHHH
Confidence 56666666777777777777766654
No 34
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=66.67 E-value=4.1 Score=26.11 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|+++..+..++.+|...|++++|...-.
T Consensus 103 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 103 ANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 479999999999999999999999988644
No 35
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=66.44 E-value=5.8 Score=22.32 Aligned_cols=30 Identities=7% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 35 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 35 LDPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 357777788888888888888888877543
No 36
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=65.75 E-value=3.5 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=14.0
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..|..++.+|...|++++|..
T Consensus 41 ~p~~~~~~~~l~~~~~~~g~~~~A~~ 66 (164)
T 3sz7_A 41 APANPIYLSNRAAAYSASGQHEKAAE 66 (164)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHccCHHHHHH
Confidence 45555555555555555555555544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=65.57 E-value=3.4 Score=27.68 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=27.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|+++..|..++.+|...|++++|...-+..
T Consensus 113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 57999999999999999999999998864433
No 38
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=65.48 E-value=5 Score=23.53 Aligned_cols=24 Identities=4% Similarity=-0.043 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHcCCChhHHH
Q 033305 5 NNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 5 ~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
.++..|..+++.|...|++++|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~ 37 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMK 37 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 334445555555555555555554
No 39
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=65.44 E-value=6.3 Score=24.25 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 47 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 76 (142)
T 2xcb_A 47 LDHYDARYFLGLGACRQSLGLYEQALQSYS 76 (142)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 478899999999999999999999887644
No 40
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=63.83 E-value=5.5 Score=23.78 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=20.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
.+|.++..|..++..|...|++++|...
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 31 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAAC 31 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3566777788888888888888887764
No 41
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=63.82 E-value=8.1 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHcCCChhHHH
Q 033305 8 RVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 8 ~~yvlLsniYa~~G~w~~~~~ 28 (122)
..|..++.+|...|++++|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~ 30 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIE 30 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHH
Confidence 344455555555555555443
No 42
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=63.31 E-value=2.9 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=26.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|+++.++..|+.+|...|++++|...-.
T Consensus 146 ~~P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 146 LSNQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp HTTSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 479999999999999999999999987643
No 43
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=62.64 E-value=4.3 Score=25.60 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=17.1
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|...
T Consensus 75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 75 DPKYSKAWSRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 566666666666666666666666654
No 44
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=62.05 E-value=10 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=21.3
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+|.++..+..++.+|...|++++|...-
T Consensus 34 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 61 (118)
T 1elw_A 34 DPHNHVLYSNRSAAYAKKGDYQKAYEDG 61 (118)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5777777778888888888888877653
No 45
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=61.14 E-value=3.2 Score=26.68 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=26.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|+++..+..++.+|...|++++|...-.
T Consensus 35 ~~P~~~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 35 ELQSRGDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp HHHTSHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 368899999999999999999999987643
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=61.09 E-value=9 Score=22.04 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=12.8
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTA 27 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~ 27 (122)
+|.++..|..++.+|...|++++|.
T Consensus 42 ~~~~~~~~~~~a~~~~~~~~~~~A~ 66 (131)
T 2vyi_A 42 NPANAVYFCNRAAAYSKLGNYAGAV 66 (131)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhchHHHH
Confidence 3444445555555555555555544
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=59.99 E-value=9.8 Score=21.66 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|.++..+..++.+|...|++++|..
T Consensus 39 ~~~~~~~~~~la~~~~~~~~~~~A~~ 64 (125)
T 1na0_A 39 DPNNAEAWYNLGNAYYKQGDYDEAIE 64 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555566666666777776666654
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=59.46 E-value=9 Score=21.64 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHcCCChhHHHH
Q 033305 7 MRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 7 ~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+..|..++.+|...|++++|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~ 26 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQC 26 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHH
Confidence 34566777777777777776653
No 49
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=58.97 E-value=3.2 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=25.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
++|+++..|..++.+|...|++++|...-
T Consensus 56 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 56 QFPNHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 47999999999999999999999998753
No 50
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=58.82 E-value=10 Score=22.04 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=15.2
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
++|.++..|..++.+|...|++++|.+
T Consensus 45 ~~~~~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 45 RNPKDAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp TCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence 345555555566666666666655543
No 51
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=58.25 E-value=9.4 Score=22.02 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 62 (131)
T 1elr_A 33 LDPTNMTYITNQAAVYFEKGDYNKCRELCE 62 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 357788888899999999999998887543
No 52
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=58.09 E-value=29 Score=23.78 Aligned_cols=21 Identities=5% Similarity=0.127 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCChhHHHHH
Q 033305 10 YVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 10 yvlLsniYa~~G~w~~~~~~r 30 (122)
|..++.+|...|++++|...-
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHH
Confidence 445666666666666666543
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=57.73 E-value=7.5 Score=27.49 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=19.4
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|+++..+++++.+|...|++++|.+.
T Consensus 97 ~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 97 DVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777777777777777777654
No 54
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=56.34 E-value=11 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
.+|.++..|..++.+|...|++++|...-.
T Consensus 39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 68 (177)
T 2e2e_A 39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68 (177)
T ss_dssp HCCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 368888889999999999999998887533
No 55
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=55.96 E-value=11 Score=26.33 Aligned_cols=30 Identities=3% Similarity=0.080 Sum_probs=24.5
Q ss_pred CCCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 1 MINLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 1 el~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+++|.++..|..++.+|...|++++|...-
T Consensus 66 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 95 (281)
T 2c2l_A 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANL 95 (281)
T ss_dssp TSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357888888888899999999998887653
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=55.63 E-value=13 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=20.2
Q ss_pred CCCCC-chhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNN-MRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~-~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.+ +..|..++.+|...|++++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 31 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEY 31 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46766 56788999999999999988764
No 57
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=55.37 E-value=13 Score=21.76 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHcCCChhHH
Q 033305 8 RVYVILSNAYAAARRWKDTA 27 (122)
Q Consensus 8 ~~yvlLsniYa~~G~w~~~~ 27 (122)
..+..++.+|...|++++|.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~ 59 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAE 59 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHH
Confidence 34445555555555555444
No 58
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=55.07 E-value=12 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+|.++..|..++.+|...|++++|...-.
T Consensus 111 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 111 DSNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 57777777777777777777777776543
No 59
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=53.95 E-value=12 Score=21.43 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=13.7
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
|.++..|..++.+|...|+++++..
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHH
Confidence 4444555555555655565555544
No 60
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=53.89 E-value=14 Score=21.13 Aligned_cols=27 Identities=4% Similarity=0.043 Sum_probs=20.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~ 34 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHF 34 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHH
Confidence 345566788888999999998887754
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=53.43 E-value=2.2 Score=31.24 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCCCCCchhHHHHH------------HHHHHcC--CChhHHHHHHHHhccCCCCCC
Q 033305 1 MINLNNMRVYVILS------------NAYAAAR--RWKDTARLRVSVRNKGMKKTP 42 (122)
Q Consensus 1 el~p~~~~~yvlLs------------niYa~~G--~w~~~~~~r~~m~~~~l~k~~ 42 (122)
+++|+++..+..|+ +.|...| +|.+..++++.++...++..|
T Consensus 357 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 46899999999998 4555556 444445566666554454333
No 62
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=52.80 E-value=15 Score=26.29 Aligned_cols=26 Identities=12% Similarity=0.036 Sum_probs=14.9
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
.|.++..|..++.+|...|++++|..
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555666666666655554
No 63
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=52.32 E-value=7.6 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=27.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH-HHHHh
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL-RVSVR 34 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~-r~~m~ 34 (122)
++|+++..+..|+.+|...|++++|... ++.++
T Consensus 214 ~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 214 ENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4799999999999999999999999875 44443
No 64
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=51.85 E-value=18 Score=21.02 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHcCCChhHHHH
Q 033305 8 RVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 8 ~~yvlLsniYa~~G~w~~~~~~ 29 (122)
..+..++.+|...|++++|...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~ 98 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQT 98 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 3344455555555555544443
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=51.77 E-value=16 Score=22.30 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=20.8
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+.|.++..|..++.+|...|++++|...-.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 66 (186)
T 3as5_A 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLE 66 (186)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCccChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356666677777777777777777776543
No 66
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=51.27 E-value=37 Score=24.92 Aligned_cols=24 Identities=4% Similarity=0.178 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHHcCCChhHHH
Q 033305 5 NNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 5 ~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
.++..|..++.+|...|++++|..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHH
Confidence 334445555555555555555544
No 67
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=50.48 E-value=29 Score=22.25 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=14.9
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++.+|..++.+|...|++++|...
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 455555555555555555555555543
No 68
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.67 E-value=15 Score=21.84 Aligned_cols=22 Identities=0% Similarity=-0.121 Sum_probs=10.6
Q ss_pred chhHHHHHHHHHHcCCChhHHH
Q 033305 7 MRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 7 ~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+..|..++.+|...|++++|..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~ 86 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAET 86 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHH
Confidence 3444444555555555554444
No 69
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=49.35 E-value=14 Score=24.64 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=25.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++..|..++.+|...|++++|...-...
T Consensus 32 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 32 KKYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp TTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57888888888888999999999888764433
No 70
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=49.17 E-value=17 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..+..++.+|...|++++|...-.
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 217 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFL 217 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence 568888888889999999999988887543
No 71
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=49.10 E-value=18 Score=24.72 Aligned_cols=28 Identities=4% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.++..|..++.+|...|++++|...
T Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 120 LEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp TCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 3555555666666666666666665554
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=48.63 E-value=18 Score=22.13 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=15.1
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
.|.++..+..++.+|...|++++|..
T Consensus 106 ~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 106 NPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 35555555666666666666665543
No 73
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=48.28 E-value=14 Score=24.27 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 71 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 100 (228)
T 4i17_A 71 KNYNLANAYIGKSAAYRDMKNNQEYIATLT 100 (228)
T ss_dssp TTCSHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 578888889999999999999999887543
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=48.26 E-value=17 Score=24.18 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=20.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+|.++..|..++.+|...|++++|.+.-.
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 56677777777777777777777776543
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=48.21 E-value=13 Score=23.90 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=26.2
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
++|.++..|..++.+|...|++++|...-..
T Consensus 66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 96 (213)
T 1hh8_A 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96 (213)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4688888999999999999999999876443
No 76
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=48.15 E-value=11 Score=25.20 Aligned_cols=30 Identities=3% Similarity=0.070 Sum_probs=26.0
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred cCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 468888999999999999999999987654
No 77
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=47.59 E-value=26 Score=25.20 Aligned_cols=30 Identities=13% Similarity=-0.035 Sum_probs=23.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 467888888888888888888888877543
No 78
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=47.57 E-value=12 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=15.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+|.++..|..++.+|...|++++|...-
T Consensus 267 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 267 QPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp CSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555555555555555555555543
No 79
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=47.57 E-value=20 Score=21.39 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHhcCcc
Q 033305 57 RINEALKDLFERMEQEGYV 75 (122)
Q Consensus 57 ~i~~~l~~l~~~~~~~gy~ 75 (122)
.+...+++|..++++.|-+
T Consensus 4 rvLq~leRLQ~KL~erGd~ 22 (83)
T 1vf6_A 4 QVLQVLDRLKMKLQEKGDT 22 (83)
T ss_dssp -CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 4567889999999998854
No 80
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=47.16 E-value=20 Score=21.75 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=17.4
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+|.++..|..++.+|...|++++|...-
T Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 104 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMALGKFRAALRDY 104 (166)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4555666666666666666666666543
No 81
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=47.14 E-value=16 Score=24.31 Aligned_cols=33 Identities=9% Similarity=-0.185 Sum_probs=27.9
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHh
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVR 34 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~ 34 (122)
++|.++..|..++.+|...|++++|...-..+.
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 468889999999999999999999998655443
No 82
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.55 E-value=18 Score=21.46 Aligned_cols=31 Identities=10% Similarity=-0.044 Sum_probs=26.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
++|.++..|..++.+|...|++++|......
T Consensus 94 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 94 KDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3688888899999999999999999886543
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=46.51 E-value=16 Score=27.61 Aligned_cols=34 Identities=3% Similarity=-0.216 Sum_probs=27.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRN 35 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~ 35 (122)
++|.++..|..++++|...|++++|.+....+.+
T Consensus 470 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3577888888899999999999998887665544
No 84
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=46.32 E-value=21 Score=23.12 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=14.5
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|.+.
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~ 79 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAF 79 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555555555555555555543
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=44.34 E-value=23 Score=23.30 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.9
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSVRN 35 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~ 35 (122)
++|.++..|..++.+|...|++++|...-.....
T Consensus 170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577788889999999999999998886555443
No 86
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=43.85 E-value=23 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.055 Sum_probs=25.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 42 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 71 (166)
T 1a17_A 42 LNPSNAIYYGNRSLAYLRTECYGYALGDAT 71 (166)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 368888889999999999999999987543
No 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=42.15 E-value=25 Score=22.36 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=11.2
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
|.++..|..++.+|...|++++|..
T Consensus 39 ~~~~~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 39 PKNELAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCChHHHHH
Confidence 3344444444444444444444443
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=42.12 E-value=15 Score=30.03 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=13.0
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
+|+++.+|..|+++|...|++++|..
T Consensus 107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44444455555555555555554444
No 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=41.94 E-value=32 Score=22.19 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=14.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTAR 28 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~ 28 (122)
.|.++..+..++.+|...|++++|.+
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 155 NENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555566666666666655543
No 90
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=41.60 E-value=23 Score=24.33 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=18.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.++..|..++.+|...|++++|...
T Consensus 183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 183 LKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566666667777777777777766654
No 91
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=41.48 E-value=15 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=26.3
Q ss_pred CCCCCCchhH----HHHHHHHHHcCCChhHHHHH
Q 033305 1 MINLNNMRVY----VILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 1 el~p~~~~~y----vlLsniYa~~G~w~~~~~~r 30 (122)
+++|+++.+| .-..+.+...|++++|...-
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 4689998888 89999999999999998753
No 92
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=41.26 E-value=15 Score=27.00 Aligned_cols=32 Identities=9% Similarity=0.067 Sum_probs=25.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++..|..++.+|...|++++|...-..+
T Consensus 68 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 68 LKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46888888888888888888888888765444
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=41.23 E-value=35 Score=25.70 Aligned_cols=30 Identities=7% Similarity=-0.074 Sum_probs=24.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-.
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~ 375 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFE 375 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 468888888888999999999988877544
No 94
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=41.02 E-value=9.4 Score=28.06 Aligned_cols=30 Identities=7% Similarity=-0.041 Sum_probs=20.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
.+|.++.+|..|..+|...|++++|.+.-+
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 368899999999999999999999987643
No 95
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=40.34 E-value=26 Score=22.97 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
|.++..|..++.+|...|++++|.+.
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~ 93 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEE 93 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444455555555555555555443
No 96
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=39.65 E-value=27 Score=24.35 Aligned_cols=27 Identities=11% Similarity=0.057 Sum_probs=15.5
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|...
T Consensus 94 ~p~~~~~~~~l~~~~~~~g~~~~A~~~ 120 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQAENEQELLAISA 120 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 455555555566666666666555554
No 97
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=39.44 E-value=30 Score=24.32 Aligned_cols=29 Identities=7% Similarity=0.004 Sum_probs=20.8
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+|.++..|..++.+|...|++++|...-+
T Consensus 277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 305 (365)
T 4eqf_A 277 QPGFIRSRYNLGISCINLGAYREAVSNFL 305 (365)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56777777777777777777777776533
No 98
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=38.46 E-value=30 Score=22.51 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=23.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
++|.++..|..++.+|...|++++|.+.-..
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3577777788888888888888888775443
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=37.65 E-value=46 Score=24.30 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=24.0
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++..|..++.+|...|++++|...-...
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46777778888888888888888887764433
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=37.47 E-value=9.8 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.381 Sum_probs=24.8
Q ss_pred CCCCCchhHHH----------------HHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVI----------------LSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvl----------------LsniYa~~G~w~~~~~~r~ 31 (122)
++|+++..|.. ++.+|...|++++|...-.
T Consensus 33 ~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 33 LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777777888 9999999999999987543
No 101
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=37.09 E-value=32 Score=22.34 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=25.9
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 468888999999999999999999887543
No 102
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=37.05 E-value=20 Score=26.74 Aligned_cols=28 Identities=7% Similarity=0.163 Sum_probs=17.9
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.+..+|..+..+|...|++++|...
T Consensus 195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~ 222 (382)
T 2h6f_A 195 QDAKNYHAWQHRQWVIQEFKLWDNELQY 222 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred hCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence 4566666666666666666666666553
No 103
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=37.03 E-value=29 Score=22.04 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=12.8
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
|.++..+..++.+|...|++++|...
T Consensus 144 ~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 144 PQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 44444445555555555555554443
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=36.78 E-value=29 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=17.8
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.++..|..++.+|...|++++|.+.
T Consensus 52 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 52 LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4566666666666666666666666553
No 105
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=36.51 E-value=36 Score=24.51 Aligned_cols=31 Identities=0% Similarity=-0.063 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
+|.++..+..++.+|...|++++|.+.-..+
T Consensus 173 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 203 (450)
T 2y4t_A 173 CVWDAELRELRAECFIKEGEPRKAISDLKAA 203 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666777777777788888777777654433
No 106
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=36.40 E-value=31 Score=23.95 Aligned_cols=30 Identities=10% Similarity=-0.134 Sum_probs=26.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 33 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 62 (281)
T 2c2l_A 33 RNPLVAVYYTNRALCYLKMQQPEQALADCR 62 (281)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 478899999999999999999999987543
No 107
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=35.49 E-value=9.7 Score=25.32 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCCCCchhHHHHHHHHHHcC-----------CChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAAR-----------RWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G-----------~w~~~~~~ 29 (122)
++|+++.+|.-|.|.|...| ++++|.+.
T Consensus 75 ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 75 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113 (158)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence 68999999999999999875 67777664
No 108
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=35.46 E-value=33 Score=24.08 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=15.1
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|...
T Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQAENENEQAAIVA 121 (365)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455555555555555555555555554
No 109
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=35.37 E-value=23 Score=27.08 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=20.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|.++.+|..++.+|...|++++|.+.
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677777777777777777777777654
No 110
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=35.02 E-value=18 Score=27.48 Aligned_cols=30 Identities=7% Similarity=0.011 Sum_probs=25.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..|+.+|...|++++|...-.
T Consensus 132 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 478888899999999999999999887643
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=34.06 E-value=19 Score=29.49 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=20.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
++|+++.+|..|+++|...|++++|.+.
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~ 99 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQC 99 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4677777777777777777777777664
No 112
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.59 E-value=36 Score=23.86 Aligned_cols=32 Identities=3% Similarity=0.010 Sum_probs=26.3
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHHHHHHhc
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTARLRVSVRN 35 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~ 35 (122)
|.++..+..+..+|...|++++|.+.-+.+..
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 67778899999999999999999986554443
No 113
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=33.00 E-value=26 Score=26.62 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHcCCChhHHHH-HHHHhccCCCCCCceeEEEecccchhhhhHHHHHHHHHHHH
Q 033305 8 RVYVILSNAYAAARRWKDTARL-RVSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME 70 (122)
Q Consensus 8 ~~yvlLsniYa~~G~w~~~~~~-r~~m~~~~l~k~~g~S~iev~~h~~~~~i~~~l~~l~~~~~ 70 (122)
..|.-|+.+|...|++++|..+ ++.+.-... .-|- .||...++...|.....+|+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~--~lG~------~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV--THGR------EHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCT------TSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hcCC------CChHHHHHHHHHHHHHHHHh
Confidence 4467788889999999999875 333321111 0110 59999988888888777664
No 114
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=32.92 E-value=33 Score=25.40 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=18.2
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+|.++..|..++.+|...|++++|.+.-
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~ 82 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFT 82 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666666666666666666643
No 115
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=32.57 E-value=39 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=22.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
+|.++..|..++.+|...|++++|...-..
T Consensus 247 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 276 (368)
T 1fch_A 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRR 276 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 577777788888888888888888775443
No 116
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=32.23 E-value=41 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=14.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|.+.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~ 262 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQ 262 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 344555555555555555555555543
No 117
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=31.85 E-value=46 Score=25.37 Aligned_cols=30 Identities=7% Similarity=0.144 Sum_probs=22.4
Q ss_pred CCCCCc---hhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNM---RVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~---~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
+.|+++ ..|--|+.+|...|+|++|..+-.
T Consensus 332 lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~ 364 (433)
T 3qww_A 332 FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQ 364 (433)
T ss_dssp BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 456664 346678888999999999998643
No 118
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=31.80 E-value=42 Score=22.66 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
+|.++..|..++.+|...|++++|...-..
T Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 202 RPDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 577777788888888888888888775443
No 119
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=30.21 E-value=22 Score=25.58 Aligned_cols=30 Identities=10% Similarity=-0.113 Sum_probs=24.4
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~ 288 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFR 288 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 468888888889999999999988887543
No 120
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=29.25 E-value=43 Score=22.42 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=21.0
Q ss_pred CCCC---chhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNN---MRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~---~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
.|.+ +..+..++.+|...|++++|...-
T Consensus 45 ~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 75 (261)
T 3qky_A 45 GRTHEWAADAQFYLARAYYQNKEYLLAASEY 75 (261)
T ss_dssp CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4666 566778888888888888877753
No 121
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=28.91 E-value=52 Score=22.86 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=22.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|+++..|..+..++...|++++|..+-.
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 123 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYN 123 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 467777778888888888888888777643
No 122
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=27.94 E-value=50 Score=24.37 Aligned_cols=32 Identities=6% Similarity=0.039 Sum_probs=27.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++..|..++.+|...|++++|....+..
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46888999999999999999999998865433
No 123
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=27.74 E-value=24 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCCCC--CchhHHHHHHHHHHc-----CCChhHHHHHH
Q 033305 1 MINLN--NMRVYVILSNAYAAA-----RRWKDTARLRV 31 (122)
Q Consensus 1 el~p~--~~~~yvlLsniYa~~-----G~w~~~~~~r~ 31 (122)
++||. ++++|..|..+|+.. |..+.|.+..+
T Consensus 191 eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 191 DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 36888 789999999999994 89998887643
No 124
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=27.49 E-value=64 Score=21.58 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHHHHHHhccCCC
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTARLRVSVRNKGMK 39 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~~r~~m~~~~l~ 39 (122)
|-+|...+-+++.|...|...++..+++..=++|++
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 334666778999999999999999988777777775
No 125
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=27.39 E-value=39 Score=26.27 Aligned_cols=60 Identities=12% Similarity=-0.066 Sum_probs=38.1
Q ss_pred CCCCc---hhHHHHHHHHHHcCCChhHHHHH-HHHhccCCCCCCceeEEEecccchhhhhHHHHHHHHHHHH
Q 033305 3 NLNNM---RVYVILSNAYAAARRWKDTARLR-VSVRNKGMKKTPACSWTEIKSHPYRLRINEALKDLFERME 70 (122)
Q Consensus 3 ~p~~~---~~yvlLsniYa~~G~w~~~~~~r-~~m~~~~l~k~~g~S~iev~~h~~~~~i~~~l~~l~~~~~ 70 (122)
.|++| ..|.-|+.+|...|++++|..+- +.+.-+.. .-|- .||...++..+|.....++.
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~--~lG~------~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV--THGP------SHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCT------TSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--HhCC------CChHHHHHHHHHHHHHHHHH
Confidence 45554 45677888899999999998753 33221110 1111 59988888887777665443
No 126
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=27.25 E-value=32 Score=25.07 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.3
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++++|...|++++|.....
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 478888899999999999999999988644
No 127
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=27.17 E-value=24 Score=28.18 Aligned_cols=30 Identities=17% Similarity=-0.028 Sum_probs=25.5
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++.+|..++.+|...|++++|...-.
T Consensus 529 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 529 TNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578898999999999999999998877543
No 128
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=26.46 E-value=62 Score=21.55 Aligned_cols=32 Identities=3% Similarity=0.006 Sum_probs=26.7
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
++|.++..+..++..|...|++++|...-...
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 41 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAV 41 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56788888999999999999999999875544
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=25.31 E-value=44 Score=25.59 Aligned_cols=30 Identities=7% Similarity=0.002 Sum_probs=24.1
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLRV 31 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r~ 31 (122)
++|.++..|..++.+|...|++++|...-.
T Consensus 18 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 47 (568)
T 2vsy_A 18 HRPQDFVAWLMLADAELGMGDTTAGEMAVQ 47 (568)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578899999999999999999999987543
No 130
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=25.22 E-value=52 Score=24.37 Aligned_cols=29 Identities=10% Similarity=-0.086 Sum_probs=23.0
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
++|+++..|..+..+|...|++++|...-
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 47888888888888888888888877653
No 131
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=24.98 E-value=70 Score=19.58 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHhcCcccCCCc
Q 033305 56 LRINEALKDLFERMEQEGYVPTTKE 80 (122)
Q Consensus 56 ~~i~~~l~~l~~~~~~~gy~~~~~~ 80 (122)
..|...+++-..+++..||.||.-.
T Consensus 16 irIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 16 IRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 3456667777778899999999653
No 132
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=24.52 E-value=54 Score=21.93 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=18.4
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
+|.++..+..++.+|...|++++|...-
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~ 29 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYF 29 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5677777777777777777777776643
No 133
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=24.13 E-value=48 Score=16.14 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhcc
Q 033305 12 ILSNAYAAARRWKDTARLRVSVRNK 36 (122)
Q Consensus 12 lLsniYa~~G~w~~~~~~r~~m~~~ 36 (122)
.-..-|-..|+-++|..+...|+.+
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~~ 31 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKNK 31 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4456688899999999999988754
No 134
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=23.61 E-value=68 Score=25.56 Aligned_cols=27 Identities=7% Similarity=-0.024 Sum_probs=16.7
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.++..|..++.+|...|++++|...
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~ 455 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRK 455 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHH
Confidence 456666666666666666666666553
No 135
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=23.48 E-value=83 Score=20.56 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=22.2
Q ss_pred CCCCc---hhHHHHHHHHHHcCCChhHHHHHHHHhcc
Q 033305 3 NLNNM---RVYVILSNAYAAARRWKDTARLRVSVRNK 36 (122)
Q Consensus 3 ~p~~~---~~yvlLsniYa~~G~w~~~~~~r~~m~~~ 36 (122)
.|+++ -++..+..+|...|++++|.+..+.+...
T Consensus 177 ~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 177 YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 35543 34667777888888888777766555443
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=23.13 E-value=40 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.056 Sum_probs=25.9
Q ss_pred CCCCCchhHHHHHHHHHHcCCChhHHHHH
Q 033305 2 INLNNMRVYVILSNAYAAARRWKDTARLR 30 (122)
Q Consensus 2 l~p~~~~~yvlLsniYa~~G~w~~~~~~r 30 (122)
++|.++..|..++.+|...|++++|...-
T Consensus 35 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 63 (477)
T 1wao_1 35 LNPSNAIYYGNRSLAYLRTECYGYALGDA 63 (477)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 47889999999999999999999998753
No 137
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=22.40 E-value=50 Score=24.03 Aligned_cols=27 Identities=0% Similarity=-0.004 Sum_probs=24.3
Q ss_pred CCCCchhHHHHHHHHHHcCCChhHHHH
Q 033305 3 NLNNMRVYVILSNAYAAARRWKDTARL 29 (122)
Q Consensus 3 ~p~~~~~yvlLsniYa~~G~w~~~~~~ 29 (122)
+|.|+..-..|..+++-.|.|+.|.+-
T Consensus 27 ~P~da~~R~~LfqLLcv~G~w~RA~~Q 53 (273)
T 1zbp_A 27 SPKDASLRSSFIELLCIDGDFERADEQ 53 (273)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 688999999999999999999998863
No 138
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=21.58 E-value=73 Score=27.90 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=28.7
Q ss_pred CchhHHHHHHHHHHcCCC-hhHHHHHHHHhccCCC
Q 033305 6 NMRVYVILSNAYAAARRW-KDTARLRVSVRNKGMK 39 (122)
Q Consensus 6 ~~~~yvlLsniYa~~G~w-~~~~~~r~~m~~~~l~ 39 (122)
|.-.|..|.+.++..|++ ++|.++.+.|.++|+.
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~ 233 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 356688888899999987 5778999999999985
No 139
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=21.48 E-value=51 Score=22.05 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=23.4
Q ss_pred CCCchhHHHHHHHHHHcCCChhHHHHHHHH
Q 033305 4 LNNMRVYVILSNAYAAARRWKDTARLRVSV 33 (122)
Q Consensus 4 p~~~~~yvlLsniYa~~G~w~~~~~~r~~m 33 (122)
|.+...|..++.+|...|++++|...-...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 53 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQA 53 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444566889999999999999998765433
No 140
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=20.17 E-value=55 Score=24.67 Aligned_cols=31 Identities=3% Similarity=-0.058 Sum_probs=26.3
Q ss_pred CCC---CCchhHHHHHHHHHHcCCChhHHHHHHH
Q 033305 2 INL---NNMRVYVILSNAYAAARRWKDTARLRVS 32 (122)
Q Consensus 2 l~p---~~~~~yvlLsniYa~~G~w~~~~~~r~~ 32 (122)
++| .++..|..++.+|...|++++|......
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367 8889999999999999999999886443
Done!