BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033306
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P90921|ATPL1_CAEEL Probable ATP synthase subunit g 1, mitochondrial OS=Caenorhabditis
elegans GN=asg-1 PE=3 SV=1
Length = 131
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 58 RLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTF 117
R A IP + + K +++ K +L ++++ + + LE WF GE++GR + F
Sbjct: 46 RSADIPAIKADWAKLQKFIET--KQYVNLSIKESLVYSAVALEVVFWFFVGEMIGRRYIF 103
Query: 118 TGYYV 122
GY V
Sbjct: 104 -GYIV 107
>sp|Q6IVY4|SSH_XENLA Protein phosphatase Slingshot homolog OS=Xenopus laevis GN=ssh PE=1
SV=2
Length = 691
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 7 QLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQL 54
++ S ACQ ++ QH Y K N Q + E EK L+SKQL
Sbjct: 622 EMASYACQKIQYFEQHSEGYSKVCFVDNLQSVSEE---EKVTLVSKQL 666
>sp|Q28852|ATP5L_BOVIN ATP synthase subunit g, mitochondrial OS=Bos taurus GN=ATP5L PE=1
SV=3
Length = 103
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 60 ASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGR 113
A IPT ++ K ++ K + + L V++A + L E + WF GEI+G+
Sbjct: 44 AEIPTAIQSLKKIINSAKT--GSFKQLTVKEALLNGLVATEVWMWFYVGEIIGK 95
>sp|O75964|ATP5L_HUMAN ATP synthase subunit g, mitochondrial OS=Homo sapiens GN=ATP5L PE=1
SV=3
Length = 103
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 26 YYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQD 85
+ + L+E+ + T K L + +Y ++ +P + + +K + + Q
Sbjct: 4 FVRNLVEKTPALVNAAVTYSKPRL-ATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQT 62
Query: 86 -----LKVEDAGIAALFGLECFAWFCAGEIVGR 113
L V++A + L E WF GEI+G+
Sbjct: 63 GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGK 95
>sp|Q12233|ATPN_YEAST ATP synthase subunit g, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ATP20 PE=1 SV=1
Length = 115
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQ-YIQE---PPTVEKCNLLSKQLFY 56
M S++Q S + +S Y K E +KQ Y++E PPTV + + L+
Sbjct: 1 MLSRIQNYTSGLVSKANLLSSKALYYGKVGAEISKQIYLKEGLQPPTVAQFKSVYSNLYK 60
Query: 57 TRL--ASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGR 113
L A PT + L +KN+ KN + LK +G++ ++ GEI+GR
Sbjct: 61 QSLNFALKPT------EVLSCLKNIQKN-ELLKY------GAYGIQLIGFYSVGEIIGR 106
>sp|Q5RFH0|ATP5L_PONAB ATP synthase subunit g, mitochondrial OS=Pongo abelii GN=ATP5L PE=3
SV=1
Length = 103
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 26 YYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQD 85
+ + L+E+ + T K L + +Y ++ +P + + +K + + Q
Sbjct: 4 FVRNLVEKTPALVNAAVTYSKPRL-ATFWYYAKVELVPPTPAEIPRAIQGLKKIVNSAQT 62
Query: 86 -----LKVEDAGIAALFGLECFAWFCAGEIVGR 113
L V++A + L E WF GEI+G+
Sbjct: 63 GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGK 95
>sp|Q9CPQ8|ATP5L_MOUSE ATP synthase subunit g, mitochondrial OS=Mus musculus GN=Atp5l PE=1
SV=1
Length = 103
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 60 ASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGR 113
A IPT ++ K + K + + L V++A + L E + WF GEI+G+
Sbjct: 44 AEIPTAIQSVKKIIQSAKT--GSFKHLTVKEAVLNGLVATEVWMWFYIGEIIGK 95
>sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ilv5 PE=1 SV=2
Length = 404
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 29 QLLEQNKQYIQEP-PTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNL--WK 81
+ LE NK+ + E VE N + L Y S P RE + KEL+ ++NL WK
Sbjct: 337 RFLEANKKVLNELYDNVENGNEAKRSLEYN---SAPNYRELYDKELEEIRNLEIWK 389
>sp|P16128|Y4849_ARATH Uncharacterized protein At4g18490 OS=Arabidopsis thaliana
GN=At4g18490 PE=2 SV=3
Length = 756
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 5 LQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPT 64
+++L +A Q KF SQ K E K+ Q + N+ + ++ T A
Sbjct: 646 VEELTHRAVQG-KFSSQESRIDTKTTKEPVKESPQTKSHYQNINMANLEIPITENADNIE 704
Query: 65 RREAFLKELDYVKNLWKNRQD 85
+ EA+ KEL+ + N+ K + +
Sbjct: 705 KAEAYTKELENICNILKKKHE 725
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,025,173
Number of Sequences: 539616
Number of extensions: 1517416
Number of successful extensions: 3986
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3985
Number of HSP's gapped (non-prelim): 15
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)