Query 033306
Match_columns 122
No_of_seqs 117 out of 129
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:18:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4103 Mitochondrial F1F0-ATP 100.0 2E-33 4.3E-38 202.6 9.0 100 1-122 1-103 (103)
2 PF04718 ATP-synt_G: Mitochond 100.0 3.3E-33 7.1E-38 200.3 9.5 99 10-122 2-103 (103)
3 PF04718 ATP-synt_G: Mitochond 78.9 3 6.4E-05 29.9 3.5 32 48-79 19-55 (103)
4 KOG4103 Mitochondrial F1F0-ATP 61.4 10 0.00023 27.9 3.1 32 48-79 25-56 (103)
5 PF11221 Med21: Subunit 21 of 50.8 1E+02 0.0022 22.9 9.0 17 1-17 1-17 (144)
6 PF02337 Gag_p10: Retroviral G 42.5 1.2E+02 0.0026 21.5 6.0 56 21-76 20-88 (90)
7 COG3581 Uncharacterized protei 38.7 12 0.00025 33.5 0.3 38 60-111 289-326 (420)
8 KOG1510 RNA polymerase II holo 36.7 1.8E+02 0.0038 22.5 6.4 17 1-17 1-17 (139)
9 PF08565 CDC37_M: Cdc37 Hsp90 25.9 1.3E+02 0.0027 23.4 4.1 39 52-90 128-168 (173)
10 PF10958 DUF2759: Protein of u 24.8 2.1E+02 0.0045 18.7 5.0 39 68-114 9-47 (52)
11 cd02678 MIT_VPS4 MIT: domain c 23.3 1.9E+02 0.0042 18.8 4.2 49 21-74 23-71 (75)
12 COG4333 Uncharacterized protei 23.0 37 0.00081 26.8 0.7 20 39-58 53-72 (167)
13 COG1133 SbmA ABC-type long-cha 21.7 43 0.00094 29.6 0.9 26 91-118 16-41 (405)
No 1
>KOG4103 consensus Mitochondrial F1F0-ATP synthase, subunit g/ATP20 [Energy production and conversion]
Probab=100.00 E-value=2e-33 Score=202.56 Aligned_cols=100 Identities=32% Similarity=0.485 Sum_probs=96.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhhh---cCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHHHHH
Q 033306 1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYI---QEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVK 77 (122)
Q Consensus 1 ma~~l~~l~~ka~~~~~~~~k~~~~~~k~~l~~~~~y~---~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~~~k 77 (122)
||..+.+|++|+..+++ .+..|.+|.++.+|.|. |.|||| ||||..++++.++.+.++
T Consensus 1 ma~~~~~l~~K~~~L~~----~~~~~~~p~l~~~~~y~K~eL~PPt~---------------Ad~pai~q~l~~~~~~~~ 61 (103)
T KOG4103|consen 1 MANYMSGLVEKAANLVN----AALTYAKPRLAIFWKYAKVELAPPTP---------------ADIPAIKQDLAKLKKFAQ 61 (103)
T ss_pred CchHHHHHHHHHHHHHH----HHHHhcCchHHHHHHHHhcccCCCCh---------------hhHHHHHHHHHHhHHHHh
Confidence 89999999999999999 88888899999999997 999999 999999999999999999
Q ss_pred HHhhhcccccHHHHHHHHHHHHHHHHHHHhhhhcccCcccccccC
Q 033306 78 NLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122 (122)
Q Consensus 78 ~~~~~~~~LtVkea~~~~Lv~~Ev~~WF~vGEiIGR~f~ivGY~V 122 (122)
++ ..+||||+|+++|++|++||++||||||||||| +|+||+|
T Consensus 62 t~--~~Knltv~Eall~~~v~~Evi~wf~vGEiIGrR-~ivGY~v 103 (103)
T KOG4103|consen 62 TG--CYKNLTVKEALLNGLVTLEVIFWFYVGEIIGRR-HIVGYKV 103 (103)
T ss_pred hh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccC
Confidence 98 778999999999999999999999999999999 9999997
No 2
>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=100.00 E-value=3.3e-33 Score=200.29 Aligned_cols=99 Identities=33% Similarity=0.443 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhhhhHhHHHHHHHhhhhh---cCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHhhhcccc
Q 033306 10 SKACQASKFVSQHGTAYYKQLLEQNKQYI---QEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDL 86 (122)
Q Consensus 10 ~ka~~~~~~~~k~~~~~~k~~l~~~~~y~---~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~~~k~~~~~~~~L 86 (122)
+|+..+++ +++.|+|+.||.+++|. +.|||+++|+++.+.+++... +++..++.|+.|++++||
T Consensus 2 ~~~~~l~~----~~v~~~kv~le~~k~v~k~El~PPt~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~l 68 (103)
T PF04718_consen 2 AKVTSLVN----PAVYYSKVGLELFKQVYKKELAPPTPAEFQSVYQQLFKTVK---------SAKSGSSPKSKLKQWKNL 68 (103)
T ss_pred chHHHHHH----HHHHHhHHHHHHHhHHHhhccCCcCHHHHHHHHHHHHHHHH---------HhhhhhhHHHHHHHhhcC
Confidence 56666666 89999999999999999 999999777777777776665 556666777889889999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhhhcccCcccccccC
Q 033306 87 KVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122 (122)
Q Consensus 87 tVkea~~~~Lv~~Ev~~WF~vGEiIGR~f~ivGY~V 122 (122)
|++|++.++++|+||++||||||||||| +|+||+|
T Consensus 69 ~~~e~~~~~l~~~Ev~~wF~vGEiIGRr-~ivGY~V 103 (103)
T PF04718_consen 69 TVKEAAKNGLVGAEVYGWFFVGEIIGRR-SIVGYKV 103 (103)
T ss_pred CHHHHHHHHHHHHHHHHHHhhheeeccC-ceeCccC
Confidence 9999999999999999999999999998 9999998
No 3
>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=78.88 E-value=3 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=20.6
Q ss_pred HHHHHHHhhhh-----ccccchHHHHHHHHHHHHHHH
Q 033306 48 NLLSKQLFYTR-----LASIPTRREAFLKELDYVKNL 79 (122)
Q Consensus 48 ~~L~k~~fyt~-----la~iP~~~~~~~k~v~~~k~~ 79 (122)
.|++|+++... ++++|..++++++.+++++++
T Consensus 19 le~~k~v~k~El~PPt~~~~~~~~~~l~~~~~~~~~~ 55 (103)
T PF04718_consen 19 LELFKQVYKKELAPPTPAEFQSVYQQLFKTVKSAKSG 55 (103)
T ss_pred HHHHhHHHhhccCCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 46677766555 566666666666666666655
No 4
>KOG4103 consensus Mitochondrial F1F0-ATP synthase, subunit g/ATP20 [Energy production and conversion]
Probab=61.38 E-value=10 Score=27.87 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhccccchHHHHHHHHHHHHHHH
Q 033306 48 NLLSKQLFYTRLASIPTRREAFLKELDYVKNL 79 (122)
Q Consensus 48 ~~L~k~~fyt~la~iP~~~~~~~k~v~~~k~~ 79 (122)
|+|+-+|.|++.+.-|++...|+++.++....
T Consensus 25 p~l~~~~~y~K~eL~PPt~Ad~pai~q~l~~~ 56 (103)
T KOG4103|consen 25 PRLAIFWKYAKVELAPPTPADIPAIKQDLAKL 56 (103)
T ss_pred chHHHHHHHHhcccCCCChhhHHHHHHHHHHh
Confidence 67999999999999999999999998887765
No 5
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=50.80 E-value=1e+02 Score=22.87 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHHHH
Q 033306 1 MASKLQQLQSKACQASK 17 (122)
Q Consensus 1 ma~~l~~l~~ka~~~~~ 17 (122)
||.+|.|||....+++.
T Consensus 1 M~DrlTQLQd~ldqL~~ 17 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAE 17 (144)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999999999999988
No 6
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=42.54 E-value=1.2e+02 Score=21.48 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=36.9
Q ss_pred hhhhHhHHHHHHHhhhhh--cC-------CCChhhHHHHHHHH--hhhh--ccccchHHHHHHHHHHHH
Q 033306 21 QHGTAYYKQLLEQNKQYI--QE-------PPTVEKCNLLSKQL--FYTR--LASIPTRREAFLKELDYV 76 (122)
Q Consensus 21 k~~~~~~k~~l~~~~~y~--~~-------PPt~~k~~~L~k~~--fyt~--la~iP~~~~~~~k~v~~~ 76 (122)
.+|+.--+.-+.+|-+++ .. --+++.+.++++++ +|+. ..+||...-.+|++|++.
T Consensus 20 ~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l~~~~~~~~~~~Ip~~~~~~W~lI~~~ 88 (90)
T PF02337_consen 20 ERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEELKRYYAEQGPEKIPIQAFPIWSLIRDC 88 (90)
T ss_dssp CCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHHHHHHHHCSTTTS-CHHHHHHHHHHHH
T ss_pred HcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Confidence 356655566666666665 22 25678899999998 4544 899999999999998864
No 7
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.70 E-value=12 Score=33.51 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=25.4
Q ss_pred cccchHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhhc
Q 033306 60 ASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIV 111 (122)
Q Consensus 60 a~iP~~~~~~~k~v~~~k~~~~~~~~LtVkea~~~~Lv~~Ev~~WF~vGEiI 111 (122)
+..+-.+.++.+++++++... +.++.|=+ +||++||||
T Consensus 289 s~~f~~~~s~k~ia~~a~~~l-~~g~~~GE-------------Gw~ltgem~ 326 (420)
T COG3581 289 SKRFDPMKSIKKIADAAKDYL-SLGNKTGE-------------GWFLTGEML 326 (420)
T ss_pred hccCCCcccHHHHHHHHhhhc-cccccCce-------------eeeeHHHHH
Confidence 445566677778888888763 33333322 699999986
No 8
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=36.67 E-value=1.8e+02 Score=22.54 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHHHH
Q 033306 1 MASKLQQLQSKACQASK 17 (122)
Q Consensus 1 ma~~l~~l~~ka~~~~~ 17 (122)
||.+|.|||.-..+.+.
T Consensus 1 MaDRlTQLQd~vn~~A~ 17 (139)
T KOG1510|consen 1 MADRLTQLQDTVNEMAE 17 (139)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999999988887
No 9
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=25.92 E-value=1.3e+02 Score=23.43 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=29.0
Q ss_pred HHHhhhhccc--cchHHHHHHHHHHHHHHHhhhcccccHHH
Q 033306 52 KQLFYTRLAS--IPTRREAFLKELDYVKNLWKNRQDLKVED 90 (122)
Q Consensus 52 k~~fyt~la~--iP~~~~~~~k~v~~~k~~~~~~~~LtVke 90 (122)
=.+||.|+.. -|...+.|.+.|+....-.++|.....+|
T Consensus 128 v~~FF~r~~~~~~~~~~~~F~~dv~~~~~rIk~Ra~~~~~E 168 (173)
T PF08565_consen 128 VRLFFKRIKTPGHPEAKKVFEDDVEAFYERIKERAKEKMEE 168 (173)
T ss_dssp HHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999887 77789999999999777666555444444
No 10
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=24.79 E-value=2.1e+02 Score=18.71 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 033306 68 AFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRG 114 (122)
Q Consensus 68 ~~~k~v~~~k~~~~~~~~LtVkea~~~~Lv~~Ev~~WF~vGEiIGR~ 114 (122)
+.+-.+++.|+. | -=+..=+++++=|+.||.+--+|=-+
T Consensus 9 a~~g~~rslK~K--N------~l~i~F~~~t~~VFGwFtimTii~~g 47 (52)
T PF10958_consen 9 AAFGVLRSLKNK--N------FLGIGFALVTVAVFGWFTIMTIIHSG 47 (52)
T ss_pred HHHHHHHHHHHh--h------HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344455555553 2 12456678888999999998777543
No 11
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.30 E-value=1.9e+02 Score=18.79 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=32.4
Q ss_pred hhhhHhHHHHHHHhhhhhcCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHH
Q 033306 21 QHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELD 74 (122)
Q Consensus 21 k~~~~~~k~~l~~~~~y~~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~ 74 (122)
+.+..+|..-++.+.+++-..|.+.+ +..+..+..+-..+.+.+...++
T Consensus 23 ~eA~~~Y~~aie~l~~~~k~e~~~~~-----k~~~~~k~~eyl~RaE~LK~~l~ 71 (75)
T cd02678 23 EEALRLYQHALEYFMHALKYEKNPKS-----KESIRAKCTEYLDRAEKLKEYLA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999856666633 44455555555555555555443
No 12
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.97 E-value=37 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=18.8
Q ss_pred cCCCChhhHHHHHHHHhhhh
Q 033306 39 QEPPTVEKCNLLSKQLFYTR 58 (122)
Q Consensus 39 ~~PPt~~k~~~L~k~~fyt~ 58 (122)
++.||..+|..+++-|-|+-
T Consensus 53 ~Dd~Ti~rci~fA~swgyGg 72 (167)
T COG4333 53 KDDRTLSRCISFAKSWGYGG 72 (167)
T ss_pred hcchHHHHHHHHHhhcccCc
Confidence 89999999999999998876
No 13
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=21.71 E-value=43 Score=29.56 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCcccc
Q 033306 91 AGIAALFGLECFAWFCAGEIVGRGFTFT 118 (122)
Q Consensus 91 a~~~~Lv~~Ev~~WF~vGEiIGR~f~iv 118 (122)
|.+=+|.+ +++||..||-+|.-+|+.
T Consensus 16 a~vWal~A--vL~w~~gg~~lg~~~gl~ 41 (405)
T COG1133 16 AFVWALIA--VLFWFAGGEDLGAVTGLS 41 (405)
T ss_pred HHHHHHHH--HHHHHHhhhHHHHhhCCC
Confidence 44445544 799999999999876654
Done!