Query 033306
Match_columns 122
No_of_seqs 117 out of 129
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:31:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lpy_A Matrix protein P10; GAG 56.8 49 0.0017 23.8 7.1 58 21-78 20-90 (124)
2 2rpa_A Katanin P60 ATPase-cont 31.6 1.1E+02 0.0038 20.1 5.5 45 21-79 29-75 (78)
3 1vig_A Vigilin; RNA-binding pr 28.7 18 0.00061 22.5 0.8 11 106-116 15-25 (71)
4 2p2r_A Poly(RC)-binding protei 26.8 17 0.00059 22.6 0.5 11 106-116 15-25 (76)
5 1dtj_A RNA-binding neurooncolo 24.1 20 0.0007 22.1 0.5 11 106-116 13-23 (76)
6 1wvn_A Poly(RC)-binding protei 23.7 21 0.00071 22.6 0.5 10 106-115 16-25 (82)
7 1ec6_A RNA-binding protein NOV 23.5 18 0.00061 23.2 0.1 10 106-115 13-22 (87)
8 2axy_A Poly(RC)-binding protei 22.3 24 0.00081 22.0 0.5 11 106-116 15-25 (73)
9 1bax_A M-PMV MA, M-PMV matrix 20.7 2.1E+02 0.0072 19.6 5.7 57 20-76 20-89 (94)
10 2dgr_A Ring finger and KH doma 20.7 28 0.00097 22.6 0.7 10 106-115 20-29 (83)
No 1
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=56.82 E-value=49 Score=23.84 Aligned_cols=58 Identities=7% Similarity=0.155 Sum_probs=43.1
Q ss_pred hhhhHhHHHHHHHhhhhh--cC-------CCChhhHHHHHHHH--hhhh--ccccchHHHHHHHHHHHHHH
Q 033306 21 QHGTAYYKQLLEQNKQYI--QE-------PPTVEKCNLLSKQL--FYTR--LASIPTRREAFLKELDYVKN 78 (122)
Q Consensus 21 k~~~~~~k~~l~~~~~y~--~~-------PPt~~k~~~L~k~~--fyt~--la~iP~~~~~~~k~v~~~k~ 78 (122)
..|+.-.+..|..|-+++ +. .-+++.+.++++++ +|+. ...||...-++|++|+..=.
T Consensus 20 ~rGvkV~~k~L~~Ff~~i~~~cPWFp~eGtLd~~~W~kVG~~L~~~~~~~~~~~iP~~~~~~W~LI~~~Le 90 (124)
T 2lpy_A 20 TRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKELID 90 (124)
T ss_dssp TTTCCCCHHHHHHHHHHHHHHCTTCTTTCCCCSHHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHHHH
T ss_pred HCCeeecHHHHHHHHHHHHHhCCCcCCCCccCHHHHHHHHHHHHHHHHHhCCCcCChhHHHHHHHHHHHHc
Confidence 355555666666666665 22 35778999999999 4544 78999999999999988654
No 2
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.61 E-value=1.1e+02 Score=20.06 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred hhhhHhHHHHHHHhhhhh--cCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHHHHHHH
Q 033306 21 QHGTAYYKQLLEQNKQYI--QEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNL 79 (122)
Q Consensus 21 k~~~~~~k~~l~~~~~y~--~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~~~k~~ 79 (122)
..++.||...+++-.+|+ +.+|.. | ..+....+.+..|.+.+|+.
T Consensus 29 dta~~yY~g~~~qI~k~l~~~~d~~~-r-------------~kW~~~~~ei~~E~~~Vk~i 75 (78)
T 2rpa_A 29 DSAMVYYQGVLDQMNKYLYSVKDTHL-R-------------QKWQQVWQEINVEAKQVKDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHHH-H-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHH-H-------------HhHHHHHHHHHHHHHHHHHH
Confidence 457889999999999998 554432 2 33334444555566666654
No 3
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=28.66 E-value=18 Score=22.55 Aligned_cols=11 Identities=9% Similarity=0.268 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033306 106 CAGEIVGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|.+||+|+.
T Consensus 15 ~ig~iIG~gG~ 25 (71)
T 1vig_A 15 FHRHLIGKSGA 25 (71)
T ss_dssp HHHHHTCSSCC
T ss_pred HhhhhcCCCCc
Confidence 57999999843
No 4
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=26.81 E-value=17 Score=22.59 Aligned_cols=11 Identities=36% Similarity=0.428 Sum_probs=8.7
Q ss_pred HhhhhcccCcc
Q 033306 106 CAGEIVGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.||||++.
T Consensus 15 ~vg~iIGkgG~ 25 (76)
T 2p2r_A 15 LIGCIIGRQGA 25 (76)
T ss_dssp HHHHHHCGGGH
T ss_pred HcceEECCCCh
Confidence 57999999843
No 5
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=24.08 E-value=20 Score=22.06 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=8.7
Q ss_pred HhhhhcccCcc
Q 033306 106 CAGEIVGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|-||||++.
T Consensus 13 ~vg~IIGkgG~ 23 (76)
T 1dtj_A 13 LVGAILGKGGK 23 (76)
T ss_dssp THHHHHCSTTH
T ss_pred HcceEECCCch
Confidence 57999999843
No 6
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=23.65 E-value=21 Score=22.59 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=8.4
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|.||||++
T Consensus 16 ~vg~IIGkgG 25 (82)
T 1wvn_A 16 LIGCIIGRQG 25 (82)
T ss_dssp GHHHHHCGGG
T ss_pred hccceeCCCc
Confidence 5799999984
No 7
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=23.50 E-value=18 Score=23.18 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=8.3
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|.||||++
T Consensus 13 ~vG~IIGkgG 22 (87)
T 1ec6_A 13 LVGAILGKGG 22 (87)
T ss_dssp HHHHHHCGGG
T ss_pred HcCeeECCCc
Confidence 5799999984
No 8
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=22.31 E-value=24 Score=21.99 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=8.6
Q ss_pred HhhhhcccCcc
Q 033306 106 CAGEIVGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.||||++.
T Consensus 15 ~ig~iIGkgG~ 25 (73)
T 2axy_A 15 EVGSIIGKKGE 25 (73)
T ss_dssp HHHHHHCGGGH
T ss_pred HeeeEECCCCH
Confidence 47999999843
No 9
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=20.74 E-value=2.1e+02 Score=19.61 Aligned_cols=57 Identities=9% Similarity=0.152 Sum_probs=44.1
Q ss_pred hhhhhHhHHHHHHHhhhhh--cCC-------CChhhHHHHHHHHh--hh--hccccchHHHHHHHHHHHH
Q 033306 20 SQHGTAYYKQLLEQNKQYI--QEP-------PTVEKCNLLSKQLF--YT--RLASIPTRREAFLKELDYV 76 (122)
Q Consensus 20 ~k~~~~~~k~~l~~~~~y~--~~P-------Pt~~k~~~L~k~~f--yt--~la~iP~~~~~~~k~v~~~ 76 (122)
-+.|+.-.+..+.+|-+++ ..| -+...+.++++++- |+ ....||..--++|++|..+
T Consensus 20 k~RgIkVkk~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~kVG~~L~~~~~~~g~~~ip~~~f~~W~lIrd~ 89 (94)
T 1bax_A 20 KTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKEL 89 (94)
T ss_pred HHcCeeecHHHHHHHHHHHHHhCCCcCcCCcccHHHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHH
Confidence 4577777888888888887 222 46788999999985 42 2689999999999998764
No 10
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=28 Score=22.59 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=8.1
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|.||||++
T Consensus 20 ~vG~IIGkgG 29 (83)
T 2dgr_A 20 VVGLVVGPKG 29 (83)
T ss_dssp HHHHHHTTTT
T ss_pred HeeeeECCCc
Confidence 5789999983
Done!