Query 033306
Match_columns 122
No_of_seqs 117 out of 129
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 20:31:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f76x1 a.61.1.3 (X:1-94) Maso 69.8 5.1 0.00037 25.8 5.5 65 12-76 12-89 (94)
2 d2cpqa1 d.51.1.1 (A:212-289) F 26.0 9.1 0.00066 23.3 0.7 10 106-115 18-27 (78)
3 d1us7b_ a.205.1.1 (B:) Hsp90 c 24.9 35 0.0025 24.5 3.9 39 53-91 88-127 (201)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 22.4 45 0.0033 20.9 3.8 32 66-99 153-184 (193)
5 d1iqca1 a.3.1.5 (A:1-150) Di-h 21.0 21 0.0016 23.9 1.9 18 40-58 12-29 (150)
6 d1e3ha4 d.52.3.1 (A:579-632) P 20.5 9.9 0.00072 22.0 0.0 10 106-115 13-22 (54)
7 d2ctja1 d.51.1.1 (A:8-89) Vigi 19.6 15 0.0011 21.8 0.7 10 106-115 20-29 (82)
8 d1j4wa1 d.51.1.1 (A:1-74) Far 19.1 14 0.001 21.3 0.5 11 105-115 12-22 (74)
9 d1nmla1 a.3.1.5 (A:1-166) Di-h 19.0 24 0.0018 24.1 1.8 17 41-58 25-41 (166)
10 d1j4wa2 d.51.1.1 (A:104-174) F 17.9 14 0.001 21.3 0.3 11 106-116 11-21 (71)
No 1
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=69.81 E-value=5.1 Score=25.85 Aligned_cols=65 Identities=8% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhhHhHHHHHHHhhhhh---------cCCCChhhHHHHHHHH--hhhh--ccccchHHHHHHHHHHHH
Q 033306 12 ACQASKFVSQHGTAYYKQLLEQNKQYI---------QEPPTVEKCNLLSKQL--FYTR--LASIPTRREAFLKELDYV 76 (122)
Q Consensus 12 a~~~~~~~~k~~~~~~k~~l~~~~~y~---------~~PPt~~k~~~L~k~~--fyt~--la~iP~~~~~~~k~v~~~ 76 (122)
.+.+-+...+.|+.-.+..+.++-+++ --+-+++.+.++++.+ +|.. ...||...-+.|++|..+
T Consensus 12 i~~Lk~lLk~rGvkV~~~~L~~f~~~I~~~cPWFp~~Gtl~~~~W~kvG~~l~~~~~~~~~~~ip~~~~~~W~lIr~~ 89 (94)
T d2f76x1 12 VEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAFSYWNLIKEL 89 (94)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHCCCCCCCSSCHHHHHHHHHHHHHHHHHHHSCCSSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeecCHHHHHHHHHHHHHhCCCccccCCccHHHHHHHHHHHHHHHHHcCCCccCchHHhHHHHHHHH
Confidence 344444455677777788888888887 2335778899999999 4554 678999999999999875
No 2
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.02 E-value=9.1 Score=23.25 Aligned_cols=10 Identities=20% Similarity=0.125 Sum_probs=8.3
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|.+||||+
T Consensus 18 ~ig~vIG~gG 27 (78)
T d2cpqa1 18 LMGLAIGTHG 27 (78)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHcCCCh
Confidence 5899999984
No 3
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.94 E-value=35 Score=24.46 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=28.2
Q ss_pred HHhhhhcc-ccchHHHHHHHHHHHHHHHhhhcccccHHHH
Q 033306 53 QLFYTRLA-SIPTRREAFLKELDYVKNLWKNRQDLKVEDA 91 (122)
Q Consensus 53 ~~fyt~la-~iP~~~~~~~k~v~~~k~~~~~~~~LtVkea 91 (122)
.+||.|+. .-|...++|.+++++.++-.+.|.....+|+
T Consensus 88 ~~FF~ki~~~~~~y~~~F~~dv~~~~~Rik~Ra~~~~~e~ 127 (201)
T d1us7b_ 88 RQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKA 127 (201)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889965 3567889999999998887665555444444
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=22.41 E-value=45 Score=20.89 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Q 033306 66 REAFLKELDYVKNLWKNRQDLKVEDAGIAALFGL 99 (122)
Q Consensus 66 ~~~~~k~v~~~k~~~~~~~~LtVkea~~~~Lv~~ 99 (122)
.+.+.+.++..+......+++ +++++.-||+.
T Consensus 153 l~~ld~~i~~~~~~i~~l~~~--~~~ll~~lft~ 184 (193)
T d1ydxa1 153 LSVFDERLENLASLIEINRKL--RDEYAHKLFSL 184 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHcc
Confidence 344444444444433222222 67777777654
No 5
>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=21.00 E-value=21 Score=23.86 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.7
Q ss_pred CCCChhhHHHHHHHHhhhh
Q 033306 40 EPPTVEKCNLLSKQLFYTR 58 (122)
Q Consensus 40 ~PPt~~k~~~L~k~~fyt~ 58 (122)
.|.+++| -+|+|.|||..
T Consensus 12 ~p~~~~~-~~LGk~LF~D~ 29 (150)
T d1iqca1 12 TPENADM-AELGKMLFFDP 29 (150)
T ss_dssp CCSSHHH-HHHHHHHHTCG
T ss_pred CCCCHHH-HHHHHHHhCCc
Confidence 3556666 58999999976
No 6
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=20.54 E-value=9.9 Score=21.98 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=0.0
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
-+|++||+|+
T Consensus 13 kig~vIG~GG 22 (54)
T d1e3ha4 13 KIGEVIGPKR 22 (54)
T ss_dssp ----------
T ss_pred HeeEEECCcc
Confidence 3789999983
No 7
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.65 E-value=15 Score=21.75 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=8.2
Q ss_pred HhhhhcccCc
Q 033306 106 CAGEIVGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
++|-||||++
T Consensus 20 ~~~~iIGk~G 29 (82)
T d2ctja1 20 LHNSLIGTKG 29 (82)
T ss_dssp HHHHHHCSSS
T ss_pred HHhhcCCCCC
Confidence 5789999984
No 8
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.05 E-value=14 Score=21.34 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=8.8
Q ss_pred HHhhhhcccCc
Q 033306 105 FCAGEIVGRGF 115 (122)
Q Consensus 105 F~vGEiIGR~f 115 (122)
.++|-||||++
T Consensus 12 ~~vg~iIGk~G 22 (74)
T d1j4wa1 12 FAVGIVIGRNG 22 (74)
T ss_dssp HHHHHHHCGGG
T ss_pred HHCCeeECCCC
Confidence 36899999983
No 9
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=18.97 E-value=24 Score=24.09 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.5
Q ss_pred CCChhhHHHHHHHHhhhh
Q 033306 41 PPTVEKCNLLSKQLFYTR 58 (122)
Q Consensus 41 PPt~~k~~~L~k~~fyt~ 58 (122)
|.|++| -+|+|.|||..
T Consensus 25 ~~t~ak-veLGk~LFfD~ 41 (166)
T d1nmla1 25 ELTQAK-VELGKMEFFEP 41 (166)
T ss_dssp CCCHHH-HHHHHHHHTCG
T ss_pred CCCHHH-HHHHHHHhcCc
Confidence 557777 58999999964
No 10
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.89 E-value=14 Score=21.30 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033306 106 CAGEIVGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|-||||++.
T Consensus 11 ~vg~IIGk~G~ 21 (71)
T d1j4wa2 11 KTGLIIGKGGE 21 (71)
T ss_dssp THHHHHCGGGH
T ss_pred hcceEECCCCc
Confidence 57999999843
Done!