BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033308
MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKA
VTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIK
RI

High Scoring Gene Products

Symbol, full name Information P value
PSBX
AT2G06520 		protein from Arabidopsis thaliana 6.2e-14

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033308
        (122 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2054582 - symbol:PSBX "AT2G06520" species:3702...   180  6.2e-14   1


>TAIR|locus:2054582 [details] [associations]
            symbol:PSBX "AT2G06520" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0015979 "photosynthesis" evidence=IEA]
            [GO:0016020 "membrane" evidence=IEA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] InterPro:IPR009518 Pfam:PF06596
            EMBL:CP002685 GO:GO:0009535 GO:GO:0015979 GO:GO:0009523
            UniGene:At.49022 EMBL:AC006420 UniGene:At.20999 EMBL:AF370573
            EMBL:AK226390 IPI:IPI00540983 PIR:S70489 RefSeq:NP_565335.1
            UniGene:At.22213 UniGene:At.71077 ProteinModelPortal:Q9SKI3
            SMR:Q9SKI3 STRING:Q9SKI3 PRIDE:Q9SKI3 EnsemblPlants:AT2G06520.1
            GeneID:815210 KEGG:ath:AT2G06520 TAIR:At2g06520
            HOGENOM:HOG000242514 InParanoid:Q9SKI3 OMA:MVIPEIA PhylomeDB:Q9SKI3
            ProtClustDB:CLSN2917077 ArrayExpress:Q9SKI3 Genevestigator:Q9SKI3
            Uniprot:Q9SKI3
        Length = 116

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 43/121 (35%), Positives = 55/121 (45%)

Query:     1 MTSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKX 60
             M S+SA+S+  PL          S  F KPLP+KPSK L A    + R +V+A  + +  
Sbjct:     1 MASTSAMSLVTPLNQT------RSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKAL 54

Query:    61 XXXXXXXXXXXXXIPEVAEAAGPGVSSSLTNFXXXXXXXXXXXXXXXXXXXXXSNFDPIK 120
                          IPE+AEAAG G+S SL NF                     SNFDP+K
Sbjct:    55 TGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVK 114

Query:   121 R 121
             R
Sbjct:   115 R 115


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.121   0.316    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122        87   0.00091  102 3  10 23  0.50    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  498 (53 KB)
  Total size of DFA:  97 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.84u 0.15s 11.99t   Elapsed:  00:00:00
  Total cpu time:  11.84u 0.15s 11.99t   Elapsed:  00:00:00
  Start:  Mon May 20 22:35:06 2013   End:  Mon May 20 22:35:06 2013

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