BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033308
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
 pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
 pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
 pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
 pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
 pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
          Length = 474

 Score = 25.4 bits (54), Expect = 8.2,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 2   TSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAAS 43
           TS SA+ + +PL   ++ +     + +K   VK SKVL+  +
Sbjct: 270 TSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPA 311


>pdb|2IYP|A Chain A, Product Rup
 pdb|2IYP|B Chain B, Product Rup
 pdb|2IYP|C Chain C, Product Rup
          Length = 473

 Score = 25.4 bits (54), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 2   TSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAAS 43
           TS SA+ + +PL   ++ +     + +K   VK SKVL+  +
Sbjct: 269 TSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPA 310


>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
           Aspects Of Specificity, Mechanism And Mode Of Inhibition
          Length = 472

 Score = 25.4 bits (54), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 2   TSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAAS 43
           TS SA+ + +PL   ++ +     + +K   VK SKVL+  +
Sbjct: 268 TSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPA 309


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.121    0.316 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,904,997
Number of Sequences: 62578
Number of extensions: 38187
Number of successful extensions: 51
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 4
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)