BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033308
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2JN82|PSBX_SYNJB Photosystem II reaction center X protein OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=psbX PE=3 SV=1
Length = 38
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 88 SLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121
SL NFL S+ AG VVL AL GA+I VS D ++R
Sbjct: 4 SLANFLWSLVAGAVVLGALFGAIIFVSQRDKVRR 37
>sp|Q2JRN5|PSBX2_SYNJA Photosystem II reaction center X protein 2 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX2 PE=3 SV=1
Length = 38
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 85 VSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121
++ SL NFL S+ G VVL L GA++ VS D ++R
Sbjct: 1 MTPSLANFLWSLVYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q2JRR9|PSBX1_SYNJA Photosystem II reaction center X protein 1 OS=Synechococcus sp.
(strain JA-3-3Ab) GN=psbX1 PE=3 SV=1
Length = 38
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 85 VSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121
++ SL NFL S+ G VVL L GA++ VS D ++R
Sbjct: 1 MTPSLANFLWSLLYGAVVLGLLFGAIVFVSQRDRVRR 37
>sp|Q5WZN0|SURA_LEGPL Chaperone SurA OS=Legionella pneumophila (strain Lens) GN=surA PE=3
SV=1
Length = 429
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 12 PLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAAS 71
P T Q+ + +E + A +SSG F +E L E+ + L A
Sbjct: 186 PTTRQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKE 245
Query: 72 MVIPEVAEAAGPGVSSSLTNFLLSIAAGG 100
+V +V + AGP + + + + +A GG
Sbjct: 246 VVHMKVGQVAGPIRAGNGFHLIKLVAVGG 274
>sp|Q5X877|SURA_LEGPA Chaperone SurA OS=Legionella pneumophila (strain Paris) GN=surA
PE=3 SV=1
Length = 429
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 12 PLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAAS 71
P T Q+ + +E + A +SSG F +E L E+ + L A
Sbjct: 186 PTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKE 245
Query: 72 MVIPEVAEAAGPGVSSSLTNFLLSIAAGG 100
+V +V + AGP + + + + +A GG
Sbjct: 246 VVHMKVGQVAGPIRAGNGFHLIKLVAVGG 274
>sp|Q5ZYR3|SURA_LEGPH Chaperone SurA OS=Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 / ATCC 33152 / DSM 7513) GN=surA PE=3
SV=2
Length = 429
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%)
Query: 12 PLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAAS 71
P T Q+ + +E + A +SSG F +E L E+ + L A
Sbjct: 186 PTTKQLQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKE 245
Query: 72 MVIPEVAEAAGPGVSSSLTNFLLSIAAGG 100
+V +V + AGP + + + + +A GG
Sbjct: 246 VVHMKVGQVAGPIRAGNGFHLIKLVAVGG 274
>sp|Q8TA03|6PGD_DICDI 6-phosphogluconate dehydrogenase, decarboxylating OS=Dictyostelium
discoideum GN=gnd PE=1 SV=1
Length = 493
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 2 TSSSAISMAIPLTHASQKMVVNSEAFFKPLPVKPSKVLAAASKSSGRFEVEASSLKEKAV 61
T+ +A+ + IPLT ++ + + FK VK S +LA + + + KE+ +
Sbjct: 272 TAINALDVGIPLTLVAESVFARCVSSFKEERVKASTILAGPNPNEANKKFTGD--KEQVI 329
Query: 62 TALMAALAASMVIP-----EVAEAAGPGVSSSLT--NFLLSIAAGGVVLAALIGAVIGVS 114
A+ AL AS ++ + +AA +L N L G ++ + +G + G
Sbjct: 330 EAVRQALFASKLVSYAQGFTMMKAAAKEYKWNLNYGNIALLWRGGCIIRSTFLGEIKGAF 389
Query: 115 NFDP 118
+ +P
Sbjct: 390 DKNP 393
>sp|A9AE58|SYR_BURM1 Arginine--tRNA ligase OS=Burkholderia multivorans (strain ATCC
17616 / 249) GN=argS PE=3 SV=1
Length = 598
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 56 LKEKAVTALMAALAASMVIPEVAEAAGPGVSSSLTNFLLSIAAGGVVLAALI--GAVIGV 113
L EK V AL A A ++ E AE AGPG N LS AA V+ A++ G G
Sbjct: 73 LAEKIVAALTAQPGAQGLV-ESAEIAGPG----FINLRLSAAAKQAVIGAVLAQGRAFGT 127
Query: 114 SNFDPIKRI 122
S+ + KR+
Sbjct: 128 SDREKGKRV 136
>sp|Q7NJF8|PSBX_GLOVI Photosystem II reaction center X protein OS=Gloeobacter violaceus
(strain PCC 7421) GN=psbX PE=3 SV=1
Length = 36
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 85 VSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIK 120
++++L+NFL SI GGVV+A A+ +S D I+
Sbjct: 1 MTATLSNFLWSIFWGGVVVALGAAALTAISRIDRIR 36
>sp|P42264|GRIK3_RAT Glutamate receptor ionotropic, kainate 3 OS=Rattus norvegicus
GN=Grik3 PE=1 SV=1
Length = 919
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 43 SKSSG---RFEVEASSLKEKAVTAL-MAALAASMVIPEVAEAAGPGVSSSLTN 91
+K+SG F+++ SLKE + + + + A + I EVA+ GP V+ SLTN
Sbjct: 381 NKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTN 433
>sp|B1AS29|GRIK3_MOUSE Glutamate receptor ionotropic, kainate 3 OS=Mus musculus GN=Grik3
PE=2 SV=1
Length = 919
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 43 SKSSG---RFEVEASSLKEKAVTAL-MAALAASMVIPEVAEAAGPGVSSSLTN 91
+K+SG F+++ SLKE + + + + A + I EVA+ GP V+ SLTN
Sbjct: 381 NKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTN 433
>sp|Q38PU2|GRIK3_MACFA Glutamate receptor ionotropic, kainate 3 OS=Macaca fascicularis
GN=GRIK3 PE=2 SV=1
Length = 919
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 43 SKSSG---RFEVEASSLKEKAVTAL-MAALAASMVIPEVAEAAGPGVSSSLTN 91
+K+SG F+++ SLKE + + + + A + I EVA+ GP V+ SLTN
Sbjct: 381 NKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTN 433
>sp|Q13003|GRIK3_HUMAN Glutamate receptor ionotropic, kainate 3 OS=Homo sapiens GN=GRIK3
PE=2 SV=3
Length = 919
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 43 SKSSG---RFEVEASSLKEKAVTAL-MAALAASMVIPEVAEAAGPGVSSSLTN 91
+K+SG F+++ SLKE + + + + A + I EVA+ GP V+ SLTN
Sbjct: 381 NKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGLNITEVAKGRGPNVTDSLTN 433
>sp|O75626|PRDM1_HUMAN PR domain zinc finger protein 1 OS=Homo sapiens GN=PRDM1 PE=1 SV=2
Length = 825
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 32 PVKPSKVLAAASKSSGRFEVEASSLKEKAV-------TALMAALAASMVIPEVAEAAGPG 84
P P +VL A S+ F A+S+K+KA TA AA A +V P+ AA
Sbjct: 481 PEHPREVLVPAPHSAFSFTGAAASMKDKACSPTSGSPTAGTAATAEHVVQPKATSAAMAA 540
Query: 85 VSS 87
SS
Sbjct: 541 PSS 543
>sp|A8IHK8|KATG_AZOC5 Catalase-peroxidase OS=Azorhizobium caulinodans (strain ATCC 43989
/ DSM 5975 / ORS 571) GN=katG PE=3 SV=1
Length = 744
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 32 PVKPSKVLAAASKSSGRFEVEASSLKEKAVTALMAALAASMVIPEVAEAAGPGVS 86
P + KVL A ++ G F + AS K K A + LA + + E A+AAG VS
Sbjct: 514 PEQIDKVLKALTRIQGEFNLNASDGK-KVSLADVIVLAGNAGVEEAAKAAGHDVS 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.321
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,088,390
Number of Sequences: 539616
Number of extensions: 1003051
Number of successful extensions: 4893
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 4871
Number of HSP's gapped (non-prelim): 57
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)