Query 033308
Match_columns 122
No_of_seqs 91 out of 93
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 20:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_X Photosystem II PSBX pro 99.8 2E-21 6.8E-26 120.9 2.8 38 84-121 1-38 (39)
2 3bz1_X Photosystem II PSBX pro 99.8 5.7E-21 1.9E-25 124.2 3.3 39 83-121 10-48 (50)
3 2zvk_U DNA polymerase ETA, pro 34.9 7.3 0.00025 22.1 -0.2 11 23-33 11-21 (26)
4 1nvp_C Transcription initiatio 16.2 26 0.00088 23.8 -0.4 11 111-121 34-44 (76)
5 1ztd_A Hypothetical protein PF 14.3 75 0.0026 23.6 1.7 13 87-99 20-32 (133)
6 1nh2_C Transcription initiatio 14.1 32 0.0011 23.6 -0.4 11 111-121 36-46 (79)
7 2ks1_B Epidermal growth factor 13.3 73 0.0025 19.3 1.2 9 97-105 17-25 (44)
8 2k1k_A Ephrin type-A receptor 12.4 1.4E+02 0.0046 17.4 2.1 17 93-109 13-29 (38)
9 2qjy_C Ubiquinol-cytochrome C 11.5 1.6E+02 0.0056 21.4 2.8 35 85-119 7-41 (187)
10 2l2t_A Receptor tyrosine-prote 11.0 1.4E+02 0.0046 18.2 1.9 21 93-113 12-32 (44)
No 1
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=99.82 E-value=2e-21 Score=120.87 Aligned_cols=38 Identities=29% Similarity=0.612 Sum_probs=37.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCccc
Q 033308 84 GVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121 (122)
Q Consensus 84 ~mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V~R 121 (122)
.|||||+|||+||+|||+|+++|++||++|||+|||+|
T Consensus 1 ~mTpSL~nFl~Sl~aG~vvvv~i~~ali~VSq~D~v~R 38 (39)
T 3arc_X 1 TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQR 38 (39)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHheeEeccCcccc
Confidence 49999999999999999999999999999999999999
No 2
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=99.81 E-value=5.7e-21 Score=124.18 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=36.5
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCccc
Q 033308 83 PGVSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPIKR 121 (122)
Q Consensus 83 ~~mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V~R 121 (122)
.+|||||+|||+||+|||+|+++|+++|++|||+|||+|
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv~i~~aLi~VSq~D~v~R 48 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQR 48 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHheeeeccCcccc
Confidence 479999999999999999999999999999999999999
No 3
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=34.95 E-value=7.3 Score=22.14 Aligned_cols=11 Identities=55% Similarity=0.908 Sum_probs=8.7
Q ss_pred ccccccccCCC
Q 033308 23 NSEAFFKPLPV 33 (122)
Q Consensus 23 ss~~ff~Plp~ 33 (122)
.-++|||||+-
T Consensus 11 TLesFFK~L~~ 21 (26)
T 2zvk_U 11 TLESFFKPLTH 21 (26)
T ss_pred cHHHHhccCCc
Confidence 45789999974
No 4
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=16.23 E-value=26 Score=23.84 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=9.3
Q ss_pred eeeecCCCccc
Q 033308 111 IGVSNFDPIKR 121 (122)
Q Consensus 111 i~VSq~D~V~R 121 (122)
+.+.|+|+|+|
T Consensus 34 ~vlC~ydKV~R 44 (76)
T 1nvp_C 34 VVVCQYDKIHR 44 (76)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEec
Confidence 56889999988
No 5
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=14.26 E-value=75 Score=23.64 Aligned_cols=13 Identities=54% Similarity=0.667 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHH
Q 033308 87 SSLTNFLLSIAAG 99 (122)
Q Consensus 87 PSL~NFL~SlvaG 99 (122)
.||-||++|+..-
T Consensus 20 DSLvNfl~SlALs 32 (133)
T 1ztd_A 20 DSLINFLYSLALT 32 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999754
No 6
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=14.06 E-value=32 Score=23.56 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=9.3
Q ss_pred eeeecCCCccc
Q 033308 111 IGVSNFDPIKR 121 (122)
Q Consensus 111 i~VSq~D~V~R 121 (122)
+.+.|+|+|+|
T Consensus 36 ~vlC~ydKV~R 46 (79)
T 1nh2_C 36 LMLCLYDKVTR 46 (79)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEee
Confidence 67889999988
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.34 E-value=73 Score=19.29 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 033308 97 AAGGVVLAA 105 (122)
Q Consensus 97 vaGgvVv~~ 105 (122)
|.||+.+++
T Consensus 17 VVgGv~~~~ 25 (44)
T 2ks1_B 17 MVGALLLLL 25 (44)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 344444443
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=12.36 E-value=1.4e+02 Score=17.37 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 033308 93 LLSIAAGGVVLAALIGA 109 (122)
Q Consensus 93 L~SlvaGgvVv~~i~~a 109 (122)
+-.++.|.++.+++..+
T Consensus 13 IAGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHH
Confidence 44556665554443333
No 9
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=11.46 E-value=1.6e+02 Score=21.40 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhheeeecCCCc
Q 033308 85 VSSSLTNFLLSIAAGGVVLAALIGAVIGVSNFDPI 119 (122)
Q Consensus 85 mTPSL~NFL~SlvaGgvVv~~i~~ali~VSq~D~V 119 (122)
..++=.+||.-+..|...+++...++-+|++.++-
T Consensus 7 ~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~ 41 (187)
T 2qjy_C 7 HAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPS 41 (187)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 34567788876655555455555556666666654
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=11.00 E-value=1.4e+02 Score=18.18 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhheee
Q 033308 93 LLSIAAGGVVLAALIGAVIGV 113 (122)
Q Consensus 93 L~SlvaGgvVv~~i~~ali~V 113 (122)
+-.-|.||+.++++.+.++++
T Consensus 12 IA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHHH
Done!