Query 033308
Match_columns 122
No_of_seqs 91 out of 93
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 20:33:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpc_ b.56.1.1 (C:) Large ch 24.5 6.2 0.00045 23.4 -0.4 11 111-121 5-15 (47)
2 d1nh2c_ b.56.1.1 (C:) Large ch 16.9 11 0.00083 23.1 -0.4 11 111-121 16-26 (59)
3 d1ztda1 a.149.1.2 (A:2-125) Hy 13.2 40 0.0029 23.1 1.7 14 86-99 10-23 (124)
4 d1ppjw_ f.23.14.1 (W:) Subunit 12.9 72 0.0052 19.3 2.7 13 85-97 1-13 (62)
5 d2vv5a3 f.34.1.1 (A:27-112) Me 9.5 1.7E+02 0.012 16.6 3.8 25 84-108 34-58 (86)
6 d1nni1_ c.23.5.4 (1:) Azobenze 9.1 51 0.0037 20.8 1.0 12 83-94 76-87 (171)
7 d1sgma2 a.121.1.1 (A:78-188) P 8.9 1.1E+02 0.0084 17.4 2.6 19 87-105 73-91 (111)
8 d1rtta_ c.23.5.4 (A:) Hypothet 7.6 49 0.0036 21.5 0.4 12 83-94 79-90 (174)
9 d2p6ra1 a.4.5.43 (A:404-488) H 6.5 68 0.0049 18.9 0.6 17 86-102 9-25 (85)
10 d2g7sa2 a.121.1.1 (A:77-192) P 6.4 1.8E+02 0.013 16.7 2.6 17 88-104 78-94 (116)
No 1
>d1nvpc_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.51 E-value=6.2 Score=23.44 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=9.5
Q ss_pred eeeecCCCccc
Q 033308 111 IGVSNFDPIKR 121 (122)
Q Consensus 111 i~VSq~D~V~R 121 (122)
+.+.|+|+|.|
T Consensus 5 ~vlc~ydKV~R 15 (47)
T d1nvpc_ 5 VVVCQYDKIHR 15 (47)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEEe
Confidence 56899999998
No 2
>d1nh2c_ b.56.1.1 (C:) Large chain TOA1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.90 E-value=11 Score=23.11 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=9.3
Q ss_pred eeeecCCCccc
Q 033308 111 IGVSNFDPIKR 121 (122)
Q Consensus 111 i~VSq~D~V~R 121 (122)
+.+.|+|+|.|
T Consensus 16 ~vlc~yDKV~R 26 (59)
T d1nh2c_ 16 LMLCLYDKVTR 26 (59)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEee
Confidence 56889999988
No 3
>d1ztda1 a.149.1.2 (A:2-125) Hypothetical protein PF0609 {Pyrococcus furiosus [TaxId: 2261]}
Probab=13.15 E-value=40 Score=23.12 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=11.5
Q ss_pred ChhHHHHHHHHHHH
Q 033308 86 SSSLTNFLLSIAAG 99 (122)
Q Consensus 86 TPSL~NFL~SlvaG 99 (122)
-.||-||++|+..-
T Consensus 10 GDSLiNfl~SlALt 23 (124)
T d1ztda1 10 GDSLINFLYSLALT 23 (124)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 36899999999764
No 4
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.90 E-value=72 Score=19.27 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHH
Q 033308 85 VSSSLTNFLLSIA 97 (122)
Q Consensus 85 mTPSL~NFL~Slv 97 (122)
+.|||.+-|+.++
T Consensus 1 ~~psl~~~lYn~l 13 (62)
T d1ppjw_ 1 VAPTLTARLYSLL 13 (62)
T ss_dssp CCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHH
Confidence 3577776666554
No 5
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=9.54 E-value=1.7e+02 Score=16.65 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHh
Q 033308 84 GVSSSLTNFLLSIAAGGVVLAALIG 108 (122)
Q Consensus 84 ~mTPSL~NFL~SlvaGgvVv~~i~~ 108 (122)
.+++++.+|+..++--.+.+..+..
T Consensus 34 ~~~~~~~~~i~~~~~~~i~~i~~~~ 58 (86)
T d2vv5a3 34 KIDATVADFLSALVRYGIIAFTLIA 58 (86)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999998877776665433
No 6
>d1nni1_ c.23.5.4 (1:) Azobenzene reductase {Bacillus subtilis [TaxId: 1423]}
Probab=9.14 E-value=51 Score=20.77 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=10.3
Q ss_pred CCCChhHHHHHH
Q 033308 83 PGVSSSLTNFLL 94 (122)
Q Consensus 83 ~~mTPSL~NFL~ 94 (122)
.++++.|||||=
T Consensus 76 ~~~~~~lKn~iD 87 (171)
T d1nni1_ 76 SGMSGALKNALD 87 (171)
T ss_dssp TBCCHHHHHHHH
T ss_pred cccchhHhHHHH
Confidence 469999999986
No 7
>d1sgma2 a.121.1.1 (A:78-188) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=8.93 E-value=1.1e+02 Score=17.37 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 033308 87 SSLTNFLLSIAAGGVVLAA 105 (122)
Q Consensus 87 PSL~NFL~SlvaGgvVv~~ 105 (122)
..|..|+++++-|+.+..=
T Consensus 73 ~~lA~~l~~~~~Ga~~~ar 91 (111)
T d1sgma2 73 NQLGTLINSMIEGGIMLSL 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999998763
No 8
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.61 E-value=49 Score=21.48 Aligned_cols=12 Identities=17% Similarity=0.108 Sum_probs=10.2
Q ss_pred CCCChhHHHHHH
Q 033308 83 PGVSSSLTNFLL 94 (122)
Q Consensus 83 ~~mTPSL~NFL~ 94 (122)
.+|++.|||||=
T Consensus 79 ~s~~~~lKn~iD 90 (174)
T d1rtta_ 79 YSMAGVLKNAID 90 (174)
T ss_dssp TEECHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 369999999994
No 9
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.54 E-value=68 Score=18.92 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHHHHHH
Q 033308 86 SSSLTNFLLSIAAGGVV 102 (122)
Q Consensus 86 TPSL~NFL~SlvaGgvV 102 (122)
.++|.+.+++.++.|.|
T Consensus 9 ~~~L~~hllaeIasg~i 25 (85)
T d2p6ra1 9 ETHLRFHSLSIICDGYA 25 (85)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 46899999999988754
No 10
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.35 E-value=1.8e+02 Score=16.74 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 033308 88 SLTNFLLSIAAGGVVLA 104 (122)
Q Consensus 88 SL~NFL~SlvaGgvVv~ 104 (122)
.|..++++.+-|+.++.
T Consensus 78 ~lA~~l~~~~~G~~~~a 94 (116)
T d2g7sa2 78 ANAEIFMATVHGAMLSA 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999999875
Done!