BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033311
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|S Chain S, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1L|F Chain F, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|S Chain S, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
Length = 110
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEAL RLP+++ + R R+KRA+DLS+KH LP++ + YL+ L V RE+
Sbjct: 43 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERL 102
Query: 107 EREA 110
EREA
Sbjct: 103 EREA 106
>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|S Chain S, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|S Chain S, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|S Chain S, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|F Chain F, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|S Chain S, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3L70|F Chain F, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|S Chain S, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|F Chain F, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|S Chain S, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|F Chain F, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|S Chain S, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|F Chain F, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|S Chain S, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|F Chain F, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|S Chain S, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|F Chain F, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|S Chain S, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|F Chain F, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|S Chain S, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 110
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEAL RLP ++ + R R+KRA+DLS+KH LP++ + YL+ L V RE+
Sbjct: 43 VKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWVKYEEDKPYLEPYLKEVIRERL 102
Query: 107 EREA 110
EREA
Sbjct: 103 EREA 106
>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|R Chain R, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|F Chain F, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|F Chain F, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|F Chain F, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|F Chain F, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|FF Chain f, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 110
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEA+ RLP + D R R+KRA+DLSM+ + LP++ ++YL+ L V RE+
Sbjct: 43 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 102
Query: 107 ERE 109
ERE
Sbjct: 103 ERE 105
>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 110
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEA+ RLP + D R R+KRA+DLSM+ + LP++ ++YL+ L V RE+
Sbjct: 43 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 102
Query: 107 ERE 109
ERE
Sbjct: 103 ERE 105
>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 103
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEA+ RLP + D R R+KRA+DLSM+ + LP++ ++YL+ L V RE+
Sbjct: 36 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIRERK 95
Query: 107 EREALG 112
ERE
Sbjct: 96 EREEWA 101
>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 109
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQAMQTPFRNYLQDMLALVKREKA 106
+KEA+ RLP + D R R+KRA+DL+M+ + LP++ YL+ L V RE+
Sbjct: 43 VKEAIRRLPENLYDDRMFRIKRALDLNMRQQILPKEQWTKYEEDVPYLEPYLKEVIRERK 102
Query: 107 ERE 109
ERE
Sbjct: 103 ERE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,745,690
Number of Sequences: 62578
Number of extensions: 80382
Number of successful extensions: 234
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 8
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)