Query 033312
Match_columns 122
No_of_seqs 137 out of 1063
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 12:22:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02164 PPAT_CoAS phosphopante 100.0 2E-31 4.4E-36 192.2 10.9 100 23-122 1-100 (143)
2 PLN02388 phosphopantetheine ad 100.0 1.1E-30 2.3E-35 194.3 12.2 120 3-122 1-120 (177)
3 KOG3351 Predicted nucleotidylt 100.0 7.4E-31 1.6E-35 202.6 7.2 110 13-122 134-243 (293)
4 COG1019 Predicted nucleotidylt 100.0 3.3E-30 7.2E-35 186.4 8.8 101 19-122 3-103 (158)
5 PRK00777 phosphopantetheine ad 100.0 1.2E-27 2.7E-32 174.0 11.4 99 21-122 1-99 (153)
6 PRK01170 phosphopantetheine ad 99.9 2.5E-25 5.5E-30 178.3 10.0 95 23-122 2-96 (322)
7 COG1057 NadD Nicotinic acid mo 99.8 1.6E-21 3.4E-26 147.3 6.4 91 20-115 2-93 (197)
8 PRK06973 nicotinic acid mononu 99.8 1.8E-20 3.9E-25 145.4 8.9 91 19-115 20-114 (243)
9 PRK00071 nadD nicotinic acid m 99.8 6.5E-20 1.4E-24 137.8 7.3 91 20-115 3-94 (203)
10 TIGR00482 nicotinate (nicotina 99.8 1.2E-19 2.6E-24 135.6 5.6 86 25-115 1-87 (193)
11 PRK07152 nadD putative nicotin 99.8 2.1E-19 4.6E-24 144.6 7.1 90 21-115 1-91 (342)
12 PRK08887 nicotinic acid mononu 99.8 2.9E-19 6.4E-24 132.2 7.0 88 21-115 2-92 (174)
13 cd02165 NMNAT Nicotinamide/nic 99.8 1E-18 2.2E-23 130.1 6.4 87 23-115 1-88 (192)
14 PRK00168 coaD phosphopantethei 99.8 2.5E-18 5.5E-23 125.3 7.8 78 21-113 1-78 (159)
15 TIGR01510 coaD_prev_kdtB pante 99.8 2.4E-18 5.3E-23 124.9 7.2 78 23-115 1-78 (155)
16 cd02163 PPAT Phosphopantethein 99.7 8.3E-18 1.8E-22 121.9 7.0 77 23-114 1-77 (153)
17 PRK13964 coaD phosphopantethei 99.7 4.4E-17 9.4E-22 117.3 7.8 67 21-95 1-67 (140)
18 PLN02945 nicotinamide-nucleoti 99.7 4.3E-17 9.3E-22 125.6 6.4 93 16-115 17-115 (236)
19 cd02167 NMNAT_NadR Nicotinamid 99.7 3.1E-16 6.7E-21 114.5 8.8 74 23-101 1-74 (158)
20 TIGR00125 cyt_tran_rel cytidyl 99.6 8.2E-16 1.8E-20 95.8 7.1 63 23-87 1-63 (66)
21 cd09286 NMNAT_Eukarya Nicotina 99.6 5.4E-16 1.2E-20 119.0 7.5 86 23-115 2-94 (225)
22 cd02166 NMNAT_Archaea Nicotina 99.6 3.3E-15 7.1E-20 109.5 10.4 81 23-107 1-82 (163)
23 cd02173 ECT CTP:phosphoethanol 99.6 1.2E-15 2.5E-20 111.0 6.8 66 21-88 2-68 (152)
24 TIGR01527 arch_NMN_Atrans nico 99.6 6.4E-15 1.4E-19 108.6 9.3 76 23-103 1-76 (165)
25 PF01467 CTP_transf_2: Cytidyl 99.6 3.4E-15 7.5E-20 104.6 7.3 70 25-98 1-71 (157)
26 COG0615 TagD Cytidylyltransfer 99.6 6.5E-16 1.4E-20 111.0 3.7 72 22-95 2-76 (140)
27 COG0669 CoaD Phosphopantethein 99.6 1.1E-14 2.5E-19 106.1 8.2 67 21-95 2-68 (159)
28 cd02174 CCT CTP:phosphocholine 99.6 6.9E-15 1.5E-19 106.8 7.0 62 22-84 3-65 (150)
29 cd02168 NMNAT_Nudix Nicotinami 99.6 1.7E-14 3.6E-19 107.6 8.2 81 24-108 2-84 (181)
30 PRK05379 bifunctional nicotina 99.6 1.7E-14 3.7E-19 116.4 8.7 85 19-108 4-89 (340)
31 TIGR01526 nadR_NMN_Atrans nico 99.5 2.3E-14 5E-19 115.0 9.3 69 21-94 1-70 (325)
32 cd02039 cytidylyltransferase_l 99.5 6.5E-14 1.4E-18 97.6 9.8 93 23-121 1-102 (143)
33 PTZ00308 ethanolamine-phosphat 99.5 8.6E-14 1.9E-18 113.2 8.0 70 17-88 188-258 (353)
34 PRK01153 nicotinamide-nucleoti 99.5 2.5E-13 5.4E-18 100.7 9.8 75 23-102 2-78 (174)
35 PLN02406 ethanolamine-phosphat 99.5 1.6E-13 3.4E-18 113.6 7.7 62 19-83 51-113 (418)
36 cd02170 cytidylyltransferase c 99.5 1.5E-13 3.2E-18 97.1 6.5 61 21-83 1-61 (136)
37 cd02171 G3P_Cytidylyltransfera 99.5 1.7E-13 3.7E-18 95.9 6.6 62 21-84 1-62 (129)
38 PRK08099 bifunctional DNA-bind 99.4 1E-12 2.2E-17 108.3 11.1 88 17-108 48-139 (399)
39 cd02156 nt_trans nucleotidyl t 99.4 4.6E-13 9.9E-18 90.9 6.6 58 23-84 1-58 (105)
40 PLN02406 ethanolamine-phosphat 99.4 5.6E-13 1.2E-17 110.3 7.3 66 16-82 246-312 (418)
41 PLN02413 choline-phosphate cyt 99.4 1.3E-12 2.7E-17 103.5 7.6 66 16-82 22-88 (294)
42 PRK13793 nicotinamide-nucleoti 99.4 2.1E-12 4.5E-17 97.6 8.1 88 20-112 3-90 (196)
43 TIGR01518 g3p_cytidyltrns glyc 99.3 5.5E-12 1.2E-16 88.2 5.9 58 24-83 1-58 (125)
44 TIGR00124 cit_ly_ligase [citra 99.3 1.5E-11 3.2E-16 99.4 8.3 64 21-94 139-202 (332)
45 KOG2803 Choline phosphate cyti 99.3 5.8E-12 1.3E-16 100.7 5.5 85 21-108 8-96 (358)
46 PTZ00308 ethanolamine-phosphat 99.2 1.9E-11 4.1E-16 99.5 7.1 62 19-83 9-71 (353)
47 TIGR02199 rfaE_dom_II rfaE bif 99.2 3.5E-11 7.5E-16 86.5 7.1 63 21-84 11-74 (144)
48 cd02172 RfaE_N N-terminal doma 99.2 4.2E-11 9E-16 86.1 7.3 61 21-83 4-64 (144)
49 COG2870 RfaE ADP-heptose synth 99.1 8.2E-11 1.8E-15 97.0 5.8 59 22-81 333-392 (467)
50 KOG2803 Choline phosphate cyti 99.0 7.3E-10 1.6E-14 88.8 6.8 66 16-82 193-259 (358)
51 PRK11316 bifunctional heptose 99.0 6.8E-10 1.5E-14 92.1 6.9 61 21-82 340-401 (473)
52 cd02169 Citrate_lyase_ligase C 99.0 1.8E-09 3.9E-14 86.1 8.6 65 20-94 113-177 (297)
53 COG1056 NadR Nicotinamide mono 98.9 8.4E-09 1.8E-13 76.6 8.9 78 20-101 2-79 (172)
54 cd02064 FAD_synthetase_N FAD s 98.8 1.1E-08 2.3E-13 75.8 6.4 61 24-84 2-68 (180)
55 smart00764 Citrate_ly_lig Citr 98.8 3.2E-08 6.9E-13 73.9 7.8 56 27-92 5-60 (182)
56 PRK13671 hypothetical protein; 98.7 6.8E-08 1.5E-12 77.3 6.9 54 28-84 7-61 (298)
57 KOG2804 Phosphorylcholine tran 98.5 1.9E-07 4E-12 74.8 6.0 67 23-91 65-135 (348)
58 PRK07143 hypothetical protein; 98.1 1.2E-05 2.6E-10 63.8 7.3 64 19-83 13-76 (279)
59 PRK05627 bifunctional riboflav 98.1 1E-05 2.2E-10 64.9 6.5 62 23-84 15-82 (305)
60 TIGR00339 sopT ATP sulphurylas 97.9 8.1E-05 1.8E-09 61.5 8.7 78 22-106 184-266 (383)
61 PF06574 FAD_syn: FAD syntheta 97.8 5.3E-05 1.1E-09 55.3 5.7 64 21-84 5-74 (157)
62 PF08218 Citrate_ly_lig: Citra 97.7 0.00017 3.8E-09 54.0 7.1 51 28-88 6-57 (182)
63 TIGR00083 ribF riboflavin kina 97.5 0.00028 6E-09 56.3 5.7 58 25-83 2-65 (288)
64 PF05636 HIGH_NTase1: HIGH Nuc 97.4 0.00029 6.2E-09 58.3 5.8 55 28-84 8-62 (388)
65 PRK13670 hypothetical protein; 97.3 0.00044 9.5E-09 57.2 5.5 55 28-84 8-62 (388)
66 COG1323 Predicted nucleotidylt 97.0 0.00099 2.2E-08 54.7 4.6 54 28-84 8-62 (358)
67 COG3053 CitC Citrate lyase syn 96.8 0.0073 1.6E-07 48.8 7.5 59 20-88 144-203 (352)
68 KOG3199 Nicotinamide mononucle 96.8 0.0049 1.1E-07 47.5 6.2 72 25-99 12-87 (234)
69 COG0196 RibF FAD synthase [Coe 96.5 0.0066 1.4E-07 48.9 5.5 64 21-84 15-84 (304)
70 PRK00380 panC pantoate--beta-a 96.4 0.013 2.8E-07 46.6 6.9 62 21-84 22-85 (281)
71 TIGR00018 panC pantoate--beta- 96.4 0.011 2.4E-07 47.1 6.3 60 21-84 22-85 (282)
72 cd00560 PanC Pantoate-beta-ala 96.2 0.016 3.5E-07 46.1 6.4 60 21-84 22-85 (277)
73 PLN02660 pantoate--beta-alanin 95.9 0.027 5.9E-07 45.0 6.3 51 33-84 32-84 (284)
74 PF01747 ATP-sulfurylase: ATP- 95.3 0.17 3.6E-06 39.0 8.4 66 28-99 27-94 (215)
75 PF02569 Pantoate_ligase: Pant 94.0 0.06 1.3E-06 43.0 3.4 38 21-60 22-59 (280)
76 PRK13477 bifunctional pantoate 93.5 0.17 3.6E-06 43.6 5.5 60 22-83 21-82 (512)
77 cd00517 ATPS ATP-sulfurylase. 93.3 0.97 2.1E-05 37.2 9.4 71 23-99 158-231 (353)
78 PRK04149 sat sulfate adenylylt 93.2 1 2.2E-05 37.6 9.5 63 22-91 187-249 (391)
79 COG2046 MET3 ATP sulfurylase ( 93.0 0.38 8.3E-06 40.0 6.6 63 21-90 183-245 (397)
80 COG0414 PanC Panthothenate syn 92.3 0.23 5.1E-06 39.7 4.3 38 21-60 22-59 (285)
81 PRK05537 bifunctional sulfate 89.8 2.5 5.5E-05 36.7 8.7 63 22-91 187-249 (568)
82 PLN02341 pfkB-type carbohydrat 83.7 0.29 6.2E-06 41.3 -0.4 29 20-48 413-441 (470)
83 COG1519 KdtA 3-deoxy-D-manno-o 80.2 0.84 1.8E-05 38.5 1.1 35 21-59 318-352 (419)
84 KOG3042 Panthothenate syntheta 74.9 5.2 0.00011 31.4 4.0 37 22-60 25-61 (283)
85 COG1908 FrhD Coenzyme F420-red 57.1 44 0.00095 23.8 5.5 76 13-99 22-102 (132)
86 PF12112 DUF3579: Protein of u 53.0 12 0.00025 25.3 2.0 58 50-120 7-64 (92)
87 PRK13354 tyrosyl-tRNA syntheta 52.1 1.1E+02 0.0023 25.7 8.0 63 23-85 34-105 (410)
88 COG3340 PepE Peptidase E [Amin 47.6 11 0.00023 29.4 1.3 40 19-60 83-128 (224)
89 PLN02486 aminoacyl-tRNA ligase 46.8 84 0.0018 26.2 6.6 31 29-59 83-116 (383)
90 COG0528 PyrH Uridylate kinase 46.8 42 0.00092 26.3 4.5 37 20-56 124-161 (238)
91 PF02662 FlpD: Methyl-viologen 38.6 64 0.0014 22.4 4.0 69 11-89 19-90 (124)
92 KOG2884 26S proteasome regulat 38.0 67 0.0015 25.3 4.4 41 12-54 99-139 (259)
93 cd00805 TyrRS_core catalytic c 34.0 1.9E+02 0.0041 22.5 6.5 32 29-60 10-43 (269)
94 COG1564 THI80 Thiamine pyropho 30.0 31 0.00068 26.5 1.4 24 24-48 99-122 (212)
95 COG1533 SplB DNA repair photol 29.0 1E+02 0.0023 24.7 4.3 71 36-113 130-202 (297)
96 COG1237 Metal-dependent hydrol 27.4 2.4E+02 0.0052 22.4 6.0 56 24-91 169-224 (259)
97 COG0162 TyrS Tyrosyl-tRNA synt 26.6 2E+02 0.0043 24.3 5.7 30 29-58 42-73 (401)
98 PF04978 DUF664: Protein of un 26.6 37 0.00081 24.0 1.3 12 34-45 137-148 (150)
99 PRK14536 cysS cysteinyl-tRNA s 24.0 76 0.0016 27.4 2.8 17 24-40 26-44 (490)
100 PF14034 Spore_YtrH: Sporulati 23.7 20 0.00044 24.6 -0.6 10 24-33 50-59 (102)
101 PF02457 DisA_N: DisA bacteria 23.0 44 0.00095 23.3 1.0 8 114-121 103-110 (122)
102 KOG4238 Bifunctional ATP sulfu 22.3 53 0.0011 28.1 1.5 24 24-47 418-441 (627)
103 KOG4616 Mitochondrial ribosoma 21.6 1.7E+02 0.0037 20.6 3.7 61 37-110 10-73 (137)
104 TIGR00159 conserved hypothetic 21.6 47 0.001 25.6 1.0 8 114-121 172-179 (211)
105 PF04263 TPK_catalytic: Thiami 20.6 24 0.00051 24.6 -0.8 24 24-48 92-115 (123)
106 PF00579 tRNA-synt_1b: tRNA sy 20.5 1.9E+02 0.0042 22.4 4.3 31 29-60 15-47 (292)
107 COG1505 Serine proteases of th 20.2 3.3E+02 0.0071 24.6 5.9 71 14-87 573-645 (648)
No 1
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.97 E-value=2e-31 Score=192.19 Aligned_cols=100 Identities=44% Similarity=0.797 Sum_probs=92.0
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
++++|||||++|.||+.+|.+|++++.++++||++.++++++|+..+.+.++++|+++++.|++.+.|+..+++.+|+|+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 37899999999999999999999998678999999999776665445789999999999999999989889999999999
Q ss_pred CCCcccccccceEEEccccC
Q 033312 103 YGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 103 ~Gps~t~~~l~~lvvs~e~~ 122 (122)
||||.|++++||||||+||+
T Consensus 81 ~Gpt~~~~~~d~lVVS~ET~ 100 (143)
T cd02164 81 YGPTGTDPDLEAIVVSPETY 100 (143)
T ss_pred CCCcccCCCCCEEEEcHHHh
Confidence 99999999999999999984
No 2
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.97 E-value=1.1e-30 Score=194.30 Aligned_cols=120 Identities=79% Similarity=1.223 Sum_probs=109.1
Q ss_pred ccccccccccCCCCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHH
Q 033312 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (122)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~ 82 (122)
|....|.++-++.++...++.+++|||||.+|.||..||.+|++++.+.++||+++++++.+++.+..+.|+++|.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred CcccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 34456778888889999999999999999999999999999999987789999999998765554678999999999999
Q ss_pred HHHHhcCCCcEEEEeEecCCCCCcccccccceEEEccccC
Q 033312 83 AYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 83 ~~l~~~~p~~~v~~~ei~d~~Gps~t~~~l~~lvvs~e~~ 122 (122)
.|+..+.|+..+++.+|.|+|||+.+++++||||||+||.
T Consensus 81 ~fl~~~~p~~~~~i~~i~D~~Gpt~~~~~~d~LVVS~ET~ 120 (177)
T PLN02388 81 EYIKSIKPELVVQAEPIIDPYGPSIVDENLEAIVVSKETL 120 (177)
T ss_pred HHHHHcCCCceEEEEEecCCCCCcccCCCCCEEEEcHhHh
Confidence 9999999999999999999999999999999999999984
No 3
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=99.97 E-value=7.4e-31 Score=202.61 Aligned_cols=110 Identities=52% Similarity=0.887 Sum_probs=105.4
Q ss_pred CCCCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCc
Q 033312 13 SNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (122)
Q Consensus 13 ~~~~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~ 92 (122)
.+.+|.+++.++.+|||||++|.||+.||..|++++.++++||+++++++++|..++.++|+++|.+-|.+|+..++|++
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l 213 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDL 213 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCc
Confidence 46678889999999999999999999999999999999999999999999988878899999999999999999999999
Q ss_pred EEEEeEecCCCCCcccccccceEEEccccC
Q 033312 93 VVQTEPITDPYGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 93 ~v~~~ei~d~~Gps~t~~~l~~lvvs~e~~ 122 (122)
.++..+|.||||||.++++++|||||+||+
T Consensus 214 ~~~~vpi~Dp~GPt~~d~elE~lVVS~ET~ 243 (293)
T KOG3351|consen 214 NVRVVPIHDPFGPTITDPELEALVVSEETK 243 (293)
T ss_pred eEEEEecccCCCCCccCCcceEEEEeeccc
Confidence 999999999999999999999999999995
No 4
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.96 E-value=3.3e-30 Score=186.40 Aligned_cols=101 Identities=40% Similarity=0.715 Sum_probs=94.1
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
.++.++++|||||++|.||..||+.|.+.| +++++|+|+|++++++ ..+.+.|++.|.+.|.+|+....++.++ +.+
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G-~~v~IGlTsDe~~k~~-k~~~i~p~~~R~~~l~~fl~~~~~~~~~-iv~ 79 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKK-KKEKIEPYEVRLRNLRNFLESIKADYEE-IVP 79 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC-CeEEEEEccHHHHHHh-ccccCCcHHHHHHHHHHHHHHhcCCcce-EEE
Confidence 568899999999999999999999999999 6999999999999865 3578999999999999999999888876 999
Q ss_pred ecCCCCCcccccccceEEEccccC
Q 033312 99 ITDPYGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 99 i~d~~Gps~t~~~l~~lvvs~e~~ 122 (122)
|+|+||||.+++++|||||||||.
T Consensus 80 i~Dp~G~t~~~~~~e~iVVS~ET~ 103 (158)
T COG1019 80 IDDPYGPTVEDPDFEAIVVSPETY 103 (158)
T ss_pred ecCCCCCCCCcCceeEEEEccccc
Confidence 999999999999999999999984
No 5
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.95 E-value=1.2e-27 Score=174.05 Aligned_cols=99 Identities=32% Similarity=0.634 Sum_probs=89.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEec
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~ 100 (122)
|+.+++||||||+|.||+.+|++|++++ ++|+||+++|++++.++ ..++.|+++|.+|++.|++.+.|...+++.++.
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K-~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYK-KHKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccC-CCCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4679999999999999999999999998 79999999998774332 268999999999999999998899999999999
Q ss_pred CCCCCcccccccceEEEccccC
Q 033312 101 DPYGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 101 d~~Gps~t~~~l~~lvvs~e~~ 122 (122)
|+|||+++.+ +||||||+||.
T Consensus 79 d~~gp~~~~~-~d~ivvs~et~ 99 (153)
T PRK00777 79 DPYGPALEDD-FDAIVVSPETY 99 (153)
T ss_pred ccCCCccccC-CCEEEEChhhh
Confidence 9999999976 99999999973
No 6
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.92 E-value=2.5e-25 Score=178.29 Aligned_cols=95 Identities=33% Similarity=0.597 Sum_probs=85.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
++++|||||++|.||+.||++|+++| |+|+||+++|+++.+++ ..+ .|+++|.++|+.|++... ..+.+.+|+|+
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k-~~~-~~~e~R~~~v~~fl~~~~--~~~~i~~i~D~ 76 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNK-VYP-IPYEDRKRKLENFIKKFT--NKFRIRPIDDR 76 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcC-CCC-CCHHHHHHHHHHHHHhcC--CcEEEEecCCC
Confidence 68999999999999999999999998 79999999999886443 245 999999999999998754 46788999999
Q ss_pred CCCcccccccceEEEccccC
Q 033312 103 YGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 103 ~Gps~t~~~l~~lvvs~e~~ 122 (122)
|||+.+++++||||||+||.
T Consensus 77 ~Gpt~~~~~~d~IVVS~ET~ 96 (322)
T PRK01170 77 YGNTLYEEDYEIIVVSPETY 96 (322)
T ss_pred CCCCcccCCCCEEEEecccc
Confidence 99999999999999999984
No 7
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.85 E-value=1.6e-21 Score=147.32 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=81.5
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
++++++|||||||+|.||+.++++|.+... |+|++.++..++++.+ ....|.++|++|++.+++.. |.+.++..|
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~---~~~a~~~~R~~Ml~la~~~~-~~~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKK---KELASAEHRLAMLELAIEDN-PRFEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCC---ccCCCHHHHHHHHHHHHhcC-CCcceeHHH
Confidence 578999999999999999999999999864 8999999998887643 46899999999999999997 779999999
Q ss_pred ecCCCCCcccccccceE
Q 033312 99 ITDPYGPSIVDENLEAI 115 (122)
Q Consensus 99 i~d~~Gps~t~~~l~~l 115 (122)
+ ++.|+|||++||+.+
T Consensus 78 ~-~r~g~sYT~dTl~~~ 93 (197)
T COG1057 78 I-KRGGPSYTIDTLEHL 93 (197)
T ss_pred H-HcCCCcchHHHHHHH
Confidence 9 788999999999754
No 8
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.83 E-value=1.8e-20 Score=145.40 Aligned_cols=91 Identities=24% Similarity=0.363 Sum_probs=78.7
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC---CCcEE
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK---PELVV 94 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~---p~~~v 94 (122)
.++++|+|||||||+|.||+.++++|.+... |+|++.++.+++.+ ....+.++|++|++.+++... |.+.+
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-----~~~~~~~~Rl~M~~lAi~~~~~~~~~~~v 94 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-----ADVSAAEHRLAMTRAAAASLVLPGVTVRV 94 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-----CCCCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 5678999999999999999999999999864 89999999887653 235799999999999999752 46899
Q ss_pred EEeEecCCCCCcccccccceE
Q 033312 95 QTEPITDPYGPSIVDENLEAI 115 (122)
Q Consensus 95 ~~~ei~d~~Gps~t~~~l~~l 115 (122)
+.+|+ ++.||+||++||+++
T Consensus 95 ~~~Ei-~~~g~syTidTL~~l 114 (243)
T PRK06973 95 ATDEI-EHAGPTYTVDTLARW 114 (243)
T ss_pred eHhhh-hCCCCCcHHHHHHHH
Confidence 99999 678999999998765
No 9
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.81 E-value=6.5e-20 Score=137.83 Aligned_cols=91 Identities=25% Similarity=0.361 Sum_probs=77.9
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
+++++++||||||+|.||+.++++|.+... |.+++.++..+..+.+ ....+.++|++|++.+++.. |.+.++.+|
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~~---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E 78 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQ---KPLAPLEHRLAMLELAIADN-PRFSVSDIE 78 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHhcCC-CceEEeHHH
Confidence 467999999999999999999999998763 7899999887765421 35789999999999999986 789999999
Q ss_pred ecCCCCCcccccccceE
Q 033312 99 ITDPYGPSIVDENLEAI 115 (122)
Q Consensus 99 i~d~~Gps~t~~~l~~l 115 (122)
+ ++.|++||++||+.+
T Consensus 79 ~-~~~~~syT~~tl~~l 94 (203)
T PRK00071 79 L-ERPGPSYTIDTLREL 94 (203)
T ss_pred H-hCCCCCCHHHHHHHH
Confidence 9 677999999998643
No 10
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.79 E-value=1.2e-19 Score=135.60 Aligned_cols=86 Identities=22% Similarity=0.370 Sum_probs=74.8
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCCC
Q 033312 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPY 103 (122)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~~ 103 (122)
++||||||+|.||+.++++|.+.+. |+|++.++.+++.+.+ ....++++|++|++.+++.. |.+.++.+|+ ++.
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~-~~~ 75 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIEDN-PKFEVDDFEI-KRG 75 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhcC-CCEEEeHHHH-hCC
Confidence 5899999999999999999999874 8999999988776532 23479999999999999986 8899999999 788
Q ss_pred CCcccccccceE
Q 033312 104 GPSIVDENLEAI 115 (122)
Q Consensus 104 Gps~t~~~l~~l 115 (122)
||+||++||+.|
T Consensus 76 ~~syT~~tl~~l 87 (193)
T TIGR00482 76 GPSYTIDTLKHL 87 (193)
T ss_pred CCCCHHHHHHHH
Confidence 999999998765
No 11
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.79 E-value=2.1e-19 Score=144.56 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=77.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
|+++++||||||+|.||+.++++|.+.. .|+|++.++.+++.|.+ ....+.++|++|++.+++.. |.+.++.+|+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~ 76 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKK---QKASNGEHRLNMLKLALKNL-PKMEVSDFEI 76 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhhC-CCeEEeHHHH
Confidence 5799999999999999999999999875 38999999988765432 34566699999999999986 8999999999
Q ss_pred cCCCCCcccccccceE
Q 033312 100 TDPYGPSIVDENLEAI 115 (122)
Q Consensus 100 ~d~~Gps~t~~~l~~l 115 (122)
++.||+||++|++.+
T Consensus 77 -~~~~~syt~~tl~~l 91 (342)
T PRK07152 77 -KRQNVSYTIDTIKYF 91 (342)
T ss_pred -hCCCCCcHHHHHHHH
Confidence 678999999988653
No 12
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.78 E-value=2.9e-19 Score=132.19 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=71.4
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~-p~~~v~~~ei 99 (122)
+++|+|||||||+|.||+.+++++ . +.|+|++.++..... + +...+.++|++|++.+++... |.+.++.+|+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~-~~d~v~~vP~~~~~~--~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-S-HFDLVLLVPSIAHAW--G---KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-h-cCCEEEEEECCCCcc--c---CCCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 579999999999999999999985 3 348999998874221 1 246799999999999999873 7899999998
Q ss_pred cC--CCCCcccccccceE
Q 033312 100 TD--PYGPSIVDENLEAI 115 (122)
Q Consensus 100 ~d--~~Gps~t~~~l~~l 115 (122)
.. +.||+||++||+.+
T Consensus 75 ~~~~~~~~~yT~~tl~~l 92 (174)
T PRK08887 75 ELYAPDESVTTYALLTRL 92 (174)
T ss_pred hhccCCCCcchHHHHHHH
Confidence 33 37899999988654
No 13
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.76 E-value=1e-18 Score=130.12 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=74.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d 101 (122)
+|++||||||+|.||+.+++.|.+.+. |+|++.++.++..+ + ....++++|++|++.+++.. |.+.++..|+ +
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k--~--~~~~~~~~R~~m~~~~~~~~-~~i~v~~~e~-~ 74 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHK--P--PKPASFEHRLEMLKLAIEDN-PKFEVSDIEI-K 74 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCC--C--CCCCCHHHHHHHHHHHHcCC-CCEEEeHHHH-h
Confidence 589999999999999999999999974 79999998876532 2 35689999999999999874 8899999998 6
Q ss_pred CCCCcccccccceE
Q 033312 102 PYGPSIVDENLEAI 115 (122)
Q Consensus 102 ~~Gps~t~~~l~~l 115 (122)
+.||+||++||+.+
T Consensus 75 ~~~~~~t~~tl~~l 88 (192)
T cd02165 75 RDGPSYTIDTLEEL 88 (192)
T ss_pred CCCCCCHHHHHHHH
Confidence 77999999988754
No 14
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.76 E-value=2.5e-18 Score=125.32 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=64.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEec
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~ 100 (122)
|++|++||||||+|.||+.++++|++++ |+|+|++++++ .| .+..+.++|++|++.+++.. |.+.++..|
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e-- 70 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATAHL-PNVEVVSFD-- 70 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHcCC-CCEEEecCC--
Confidence 5789999999999999999999999999 89999998764 22 46899999999999999986 666665443
Q ss_pred CCCCCcccccccc
Q 033312 101 DPYGPSIVDENLE 113 (122)
Q Consensus 101 d~~Gps~t~~~l~ 113 (122)
+||.++++
T Consensus 71 -----~~t~~~~~ 78 (159)
T PRK00168 71 -----GLLVDFAR 78 (159)
T ss_pred -----ccHHHHHH
Confidence 45555543
No 15
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.75 E-value=2.4e-18 Score=124.86 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=64.5
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
+|++||||||+|.||+.++++|++.+ |+|+++++.+ . .| .+..+.++|++|++.+++.. |.+.++..|
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~-p--~k---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~e---- 68 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKN-P--SK---KPLFSLEERVELIKDATKHL-PNVRVDVFD---- 68 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCC-C--CC---CCCcCHHHHHHHHHHHHhhC-CCeEEcCcc----
Confidence 58999999999999999999999999 8999999854 2 22 35689999999999999775 777666555
Q ss_pred CCCcccccccceE
Q 033312 103 YGPSIVDENLEAI 115 (122)
Q Consensus 103 ~Gps~t~~~l~~l 115 (122)
+||+++++.+
T Consensus 69 ---~yt~dt~~~l 78 (155)
T TIGR01510 69 ---GLLVDYAKEL 78 (155)
T ss_pred ---chHHHHHHHc
Confidence 5888887643
No 16
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.73 E-value=8.3e-18 Score=121.92 Aligned_cols=77 Identities=22% Similarity=0.409 Sum_probs=63.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
+|++||||||+|.||+.++++|.+.+ |+|++++++++ .| .+..+.++|++|++.+++.. |.+.++..+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~-~~~~v~~~e---- 68 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREATKHL-PNVEVDGFD---- 68 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHHcCC-CCEEecCCc----
Confidence 58999999999999999999999999 89999998764 22 35789999999999999886 766655432
Q ss_pred CCCcccccccce
Q 033312 103 YGPSIVDENLEA 114 (122)
Q Consensus 103 ~Gps~t~~~l~~ 114 (122)
+||.++++.
T Consensus 69 ---s~t~~~l~~ 77 (153)
T cd02163 69 ---GLLVDFARK 77 (153)
T ss_pred ---chHHHHHHH
Confidence 777777764
No 17
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.70 E-value=4.4e-17 Score=117.33 Aligned_cols=67 Identities=30% Similarity=0.472 Sum_probs=58.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~ 95 (122)
|+++++||||||+|.||+.++++|.+++ |+|+|+++.++ .| .+..++++|++|++++++.. |.+.+.
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~np---~K---~~~~s~e~R~~~l~~~~~~~-~~v~v~ 67 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSINP---DK---SNASDLDSRFKNVKNKLKDF-KNVEVL 67 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccCC---CC---CCCCCHHHHHHHHHHHHcCC-CCcEEe
Confidence 4689999999999999999999999999 79999998763 33 35789999999999999986 666554
No 18
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.69 E-value=4.3e-17 Score=125.64 Aligned_cols=93 Identities=9% Similarity=0.038 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEE-----EEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIV-----VGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~vi-----Vgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~ 89 (122)
.+.+...+.++||||||+|.||+.+++.|.+... +.+. +.++.++.. | ....+.++|++|++.+++..
T Consensus 17 ~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~--k---~~~~~~~~Rl~Ml~lai~~~- 90 (236)
T PLN02945 17 TGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYK--K---KGLASAEHRIQMCQLACEDS- 90 (236)
T ss_pred ccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccc--c---CCCCCHHHHHHHHHHHhcCC-
Confidence 3455677889999999999999999999888752 4432 222233322 2 24679999999999999885
Q ss_pred CCcEEEEeEecCCCCCcccccccceE
Q 033312 90 PELVVQTEPITDPYGPSIVDENLEAI 115 (122)
Q Consensus 90 p~~~v~~~ei~d~~Gps~t~~~l~~l 115 (122)
|.+.++.+|+ ++.|++||++||+.|
T Consensus 91 ~~~~V~~~E~-~~~~~syT~dtL~~l 115 (236)
T PLN02945 91 DFIMVDPWEA-RQSTYQRTLTVLARV 115 (236)
T ss_pred CCeEecHHHh-CCCCCccHHHHHHHH
Confidence 8899999999 678999999998653
No 19
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.67 E-value=3.1e-16 Score=114.52 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=63.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d 101 (122)
+|++||+|||+|.||+.++++|++.+ |+|+|++++.+..+.+ ....+.++|++|++.++... +.+.+...++.|
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~~-~~~~v~~~~~~d 74 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPDQ-ENIVVHTLNEPD 74 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCC-CCEEEEeCCCCC
Confidence 48999999999999999999999999 8999999998765443 35689999999999999875 678888888743
No 20
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.64 E-value=8.2e-16 Score=95.82 Aligned_cols=63 Identities=29% Similarity=0.418 Sum_probs=52.9
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHh
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS 87 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~ 87 (122)
+++++|+|||+|.||+.++++|++.++ .+++++++++..+..+. .++.+.++|.++++.+...
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~~~ 63 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALKYV 63 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCC-CCCCCHHHHHHHHHHhccc
Confidence 589999999999999999999999995 88999988766543332 3799999999999887654
No 21
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.64 E-value=5.4e-16 Score=118.99 Aligned_cols=86 Identities=8% Similarity=0.034 Sum_probs=68.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-Ce-E-----EEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DR-I-----VVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~-d~-v-----iVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~ 95 (122)
+.++||||||+|.||+.++++|.+... +. + ++.+..++..+ ....+.++|++|++.+++.. |.+.++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~k-----~~~~~~~~Rl~Ml~lai~~~-~~~~v~ 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYGK-----KGLASAKHRVAMCRLAVQSS-DWIRVD 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCCC-----CCCCCHHHHHHHHHHHHccC-CCEEEE
Confidence 468999999999999999999998863 33 2 12344443322 34678999999999999986 889999
Q ss_pred EeEecCCCCCcccccccceE
Q 033312 96 TEPITDPYGPSIVDENLEAI 115 (122)
Q Consensus 96 ~~ei~d~~Gps~t~~~l~~l 115 (122)
.+|+ .+.|++||++||+.+
T Consensus 76 ~~E~-~~~~~syT~~TL~~l 94 (225)
T cd09286 76 DWES-LQPEWMRTAKVLRHH 94 (225)
T ss_pred ehhc-cCCccccHHHHHHHH
Confidence 9998 678999999998754
No 22
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.63 E-value=3.3e-15 Score=109.48 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=62.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEeEecC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPITD 101 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~-p~~~v~~~ei~d 101 (122)
+|+|||+|||+|.||+.++++|++.+ |+|+|++.++....++ ....++++|++|++.++...+ +.-.+.+..+.|
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESHTL---ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 38999999999999999999999999 8999988765432221 344788999999999988752 445677777766
Q ss_pred CCCCcc
Q 033312 102 PYGPSI 107 (122)
Q Consensus 102 ~~Gps~ 107 (122)
.+....
T Consensus 77 ~~~~~~ 82 (163)
T cd02166 77 IERNSL 82 (163)
T ss_pred CCchHH
Confidence 554443
No 23
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.61 E-value=1.2e-15 Score=111.00 Aligned_cols=66 Identities=32% Similarity=0.429 Sum_probs=56.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
.++++++||||++|.||+.+|++|+++| |+|+||+++|+.+. .|....|++++++|.+++ ..+..+
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v-~~~~~V 68 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSV-LACRYV 68 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHH-HhcCCC
Confidence 4689999999999999999999999998 79999999998764 343346899999999999 445554
No 24
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.60 E-value=6.4e-15 Score=108.56 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=59.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
.|++||+|||+|.||+.++++|++.+ |+|+|++.++..- .|. ....+.++|++|+++++... +...+.+.++.|.
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~~-~k~--~~p~~~~eR~~mi~~al~~~-~~~~~~~vP~~d~ 75 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQES-HTL--ENPFTAGERILMITQSLKEV-GDLTYYIIPIEDI 75 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCCC-CCC--CCCCCHHHHHHHHHHHHhcC-CCceEEEEecCCc
Confidence 37999999999999999999999998 8999998776542 222 33467799999999999886 3456667676554
Q ss_pred C
Q 033312 103 Y 103 (122)
Q Consensus 103 ~ 103 (122)
+
T Consensus 76 ~ 76 (165)
T TIGR01527 76 E 76 (165)
T ss_pred c
Confidence 3
No 25
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.59 E-value=3.4e-15 Score=104.58 Aligned_cols=70 Identities=29% Similarity=0.447 Sum_probs=50.2
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhcC-eEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 25 VLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~a~~~~~d-~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
++||||||+|.||+.++++|++.++. .+++.++..+..+.+ .+..++++|++|++.++... +.+.++.+|
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~-~~i~v~~~e 71 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDD-PNIEVDDWE 71 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTC-TTEEEEEEH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhc-CCccccchh
Confidence 68999999999999999999999952 355555544443322 36899999999999999986 556666655
No 26
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.59 E-value=6.5e-16 Score=111.05 Aligned_cols=72 Identities=29% Similarity=0.448 Sum_probs=56.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccc-cccCCCCCCHHHHHHHHH--HHHHhcCCCcEEE
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVE--AYIKSIKPELVVQ 95 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~-k~~~~~~~~~~~R~~~v~--~~l~~~~p~~~v~ 95 (122)
+.++++||||.+|+||+++|++|+++| ++++|.+..|+...+ |+ ..|+++.++|.++++ .++.+..|.-.++
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k-~~pi~~~~qR~evl~s~ryVD~vi~~~p~~ 76 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKK-RKPIMPEEQRAEVLESLRYVDEVILGAPWD 76 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcC-CCCCCCHHHHHHHHHcCcchheeeeCCccc
Confidence 459999999999999999999999999 677777777766643 32 479999999999998 4666654443333
No 27
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.57 E-value=1.1e-14 Score=106.12 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=59.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~ 95 (122)
++++++.|||||+++||+.++++|..++ |+|+|++..++ .| .++.++++|.+++++.+..+ |++.+.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~np---~K---~plFsleER~~l~~~~~~~l-~nV~V~ 68 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAINP---SK---KPLFSLEERVELIREATKHL-PNVEVV 68 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeCC---Cc---CCCcCHHHHHHHHHHHhcCC-CceEEE
Confidence 6899999999999999999999999999 79999999875 33 68999999999999999987 666554
No 28
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.57 E-value=6.9e-15 Score=106.79 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=53.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
+.++++||||++|.||+.+|++|+++|. |+|+||+++|+.+...+. .|++++++|.++++..
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~-~pi~~~~eR~~~l~~~ 65 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKG-PPVMTEEERYEAVRHC 65 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCC-CCcCCHHHHHHHHHhc
Confidence 4699999999999999999999999982 599999999987753222 3999999999999843
No 29
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.55 E-value=1.7e-14 Score=107.60 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=63.1
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEeEecCC
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPITDP 102 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~-p~~~v~~~ei~d~ 102 (122)
+++||+|||+|.||+.++++|++.+ ++|+|++.+....+.+ ....++++|.+|++.++...+ +.-.+.+..|.|.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~-~~vii~i~s~~~~~~~---~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA-KKVIILIGSARTARNI---KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC-CeEEEEeCCCCCCCCC---CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 7999999999999999999999999 6999999887554433 345899999999999987742 1236777888665
Q ss_pred -CCCccc
Q 033312 103 -YGPSIV 108 (122)
Q Consensus 103 -~Gps~t 108 (122)
|..+..
T Consensus 78 ~~~~~~W 84 (181)
T cd02168 78 LYSDNLW 84 (181)
T ss_pred CCChHHH
Confidence 334433
No 30
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.55 E-value=1.7e-14 Score=116.35 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=68.7
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
.++++|++||+|||+|.||+.++++|++.+ |+|+|++++...-..+ +...++++|++|++.++..+ +...+.+.+
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~-~~~r~~~~p 78 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSI---KNPFSFEERAQMIRAALAGI-DLARVTIRP 78 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcC---CCCCCHHHHHHHHHHHhhcC-CCceEEEEE
Confidence 358899999999999999999999999999 8999999876443333 23489999999999999875 456788889
Q ss_pred ecCC-CCCccc
Q 033312 99 ITDP-YGPSIV 108 (122)
Q Consensus 99 i~d~-~Gps~t 108 (122)
|.|. |-++..
T Consensus 79 i~d~~~~~~~W 89 (340)
T PRK05379 79 LRDSLYNDSLW 89 (340)
T ss_pred CCCCCcChHHH
Confidence 8775 444443
No 31
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.55 E-value=2.3e-14 Score=114.96 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=57.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC-cEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE-LVV 94 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~-~~v 94 (122)
|++|++||||||+|.||+.++++|+.++ |+|+|++++....+++ .+..+.++|++|++.+++.. +. +.+
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~~~---~~~~~~~~R~~~l~~~~~~~-~~~v~v 70 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDSKA---KRPPPVQDRLRWLREIFKYQ-KNQIFI 70 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCccC---CCCCCHHHHHHHHHHHhccC-CCeEEE
Confidence 4689999999999999999999999998 8999999885544322 46789999999999999886 54 444
No 32
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.54 E-value=6.5e-14 Score=97.56 Aligned_cols=93 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~ 102 (122)
+|+++|+|||+|.||+.++++|++.+.+.++|++.+++..+.+ .....++++|++|++.+.+.. ..+...+. +.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~---~~v~~~~~-~~ 74 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDR---LKVVPVDF-PE 74 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCC---cEEEEEec-Ch
Confidence 5899999999999999999999999856899999888765421 246889999999999888622 24445555 23
Q ss_pred CCCcccc---------cccceEEEcccc
Q 033312 103 YGPSIVD---------ENLEAIVVRYVV 121 (122)
Q Consensus 103 ~Gps~t~---------~~l~~lvvs~e~ 121 (122)
..++++. -..+.+|+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~v~G~d~ 102 (143)
T cd02039 75 VKILLAVVFILKILLKVGPDKVVVGEDF 102 (143)
T ss_pred hhccCHHHHHHHHHHHcCCcEEEECCcc
Confidence 3333332 124567766553
No 33
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.49 E-value=8.6e-14 Score=113.16 Aligned_cols=70 Identities=29% Similarity=0.423 Sum_probs=57.9
Q ss_pred CCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 17 ~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
|....+++++.||||++|.||+.+|++|+++| |+|+|||++|+.+. .|+...|+++.++|.+++. .+..+
T Consensus 188 ~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-a~~~V 258 (353)
T PTZ00308 188 PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVL-SCRYV 258 (353)
T ss_pred CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHH-hhCCC
Confidence 33346899999999999999999999999999 79999999998664 3433468999999999985 55443
No 34
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.49 E-value=2.5e-13 Score=100.73 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=56.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCC-CCccccccCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEeEec
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPIT 100 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d-~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~-p~~~v~~~ei~ 100 (122)
+|++||+|||+|.||+.++++|++.+ |+|+|++.+. +..+. ....+.++|++|++.++.... +.-.+.+.++.
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~----~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~ 76 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL----KNPFTAGERILMIRKALEEEGIDLSRYYIIPIP 76 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCC
Confidence 69999999999999999999999987 7999988653 33222 234788999999999987542 22355566664
Q ss_pred CC
Q 033312 101 DP 102 (122)
Q Consensus 101 d~ 102 (122)
|.
T Consensus 77 D~ 78 (174)
T PRK01153 77 DI 78 (174)
T ss_pred Cc
Confidence 44
No 35
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.46 E-value=1.6e-13 Score=113.60 Aligned_cols=62 Identities=34% Similarity=0.498 Sum_probs=54.7
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHH
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~ 83 (122)
.+..+++++||||++|.||+++|++|+++| |+|+||+++|+.+. +|+ .|++++++|.++++.
T Consensus 51 ~~~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~a 113 (418)
T PLN02406 51 KKPVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANKG--PPVTPMHERMIMVSG 113 (418)
T ss_pred CCceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccCC--CCcCCHHHHHHHHHh
Confidence 345679999999999999999999999999 79999999998774 443 589999999999975
No 36
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.46 E-value=1.5e-13 Score=97.07 Aligned_cols=61 Identities=34% Similarity=0.538 Sum_probs=52.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
+++++++|+||++|.||+.++++|++.+ ++++|+++.++.+...+ ..++.+.++|.++++.
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~-~~~~~~~~eR~~~l~~ 61 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIK-RRPILPEEQRAEVVEA 61 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcC-CCCCCCHHHHHHHHHc
Confidence 5789999999999999999999999998 68999999987653221 2489999999999986
No 37
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.46 E-value=1.7e-13 Score=95.94 Aligned_cols=62 Identities=29% Similarity=0.459 Sum_probs=52.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
|++++++|+||++|.||..++++|++++ ++++++++.|+..+.+. ..++.++++|.++++..
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~l~v~v~~d~~~~~~~-~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG-DKLIVAVSTDEFNAGKG-KKAVIPYEQRAEILESI 62 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHhHHhcC-CCCCCCHHHHHHHHHcC
Confidence 5789999999999999999999999998 67999999887544332 35789999999999754
No 38
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=108.32 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=65.7
Q ss_pred CCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc----ccccCCCCCCHHHHHHHHHHHHHhcCCCc
Q 033312 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT----NKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (122)
Q Consensus 17 ~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~----~k~~~~~~~~~~~R~~~v~~~l~~~~p~~ 92 (122)
|.+++++++++|+|||+|.||+.++++|+.++ |.|+|++.++...+ ++.......+.++|.+|+++.+... +
T Consensus 48 ~~~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~-d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~-~-- 123 (399)
T PRK08099 48 PRQMKKIGVVFGKFYPLHTGHIYLIQRACSQV-DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQ-K-- 123 (399)
T ss_pred hhhcCcEEEEEEecCCCCHHHHHHHHHHHHHC-CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCC-C--
Confidence 44567899999999999999999999999999 68888888775322 1111245789999999999998875 4
Q ss_pred EEEEeEecCCCCCccc
Q 033312 93 VVQTEPITDPYGPSIV 108 (122)
Q Consensus 93 ~v~~~ei~d~~Gps~t 108 (122)
++.+..+.+...|.|.
T Consensus 124 ~v~v~~~~~~~~~~~~ 139 (399)
T PRK08099 124 NIKIHAFNEEGMEPYP 139 (399)
T ss_pred CEEEEecCCCCCCCCC
Confidence 3555555443455553
No 39
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.42 E-value=4.6e-13 Score=90.93 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
++++||+|||+|.||+.++++|.+++ ++++++++.++..+.+ ..+.++++|.++++..
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHHH
Confidence 47899999999999999999999999 7899999988776432 3578999999999865
No 40
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.40 E-value=5.6e-13 Score=110.33 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHH
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVE 82 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~ 82 (122)
.|....++++++|+||.+|.||+++|++|+++| |+|+||+++|+.+. .|....|+++.++|.++|+
T Consensus 246 ~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ 312 (418)
T PLN02406 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVL 312 (418)
T ss_pred CCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHh
Confidence 455678899999999999999999999999999 79999999998774 4444579999999999886
No 41
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.38 E-value=1.3e-12 Score=103.47 Aligned_cols=66 Identities=24% Similarity=0.419 Sum_probs=55.6
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHH
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~ 82 (122)
.|..+-.+|++.|+||.+|.||+++|++|+++|. ++|+||+++|+.....+ ..|+++.++|.++|.
T Consensus 22 ~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~K-GrPIm~~~ER~e~V~ 88 (294)
T PLN02413 22 SPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYK-GKTVMTEDERYESLR 88 (294)
T ss_pred CCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcC-CCCCCCHHHHHHHHH
Confidence 3345667899999999999999999999999973 79999999998774322 258999999999886
No 42
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.37 E-value=2.1e-12 Score=97.65 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
+|+.+++.|.|.|+|.||+.++++|++.| |+|+||+.+...-... +.-.++.+|..|+...+.+. ....+-+.++
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~-devII~IGSA~~s~t~---~NPFTa~ER~~MI~~aL~e~-~~~rv~~ipi 77 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS-RYVILALGSAQMERNI---KNPFLAIEREQMILSNFSLD-EQKRIRFVHV 77 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC-CEEEEEEccCCCCCCC---CCCCCHHHHHHHHHHhcchh-hcceEEEEec
Confidence 58899999999999999999999999999 7999999986543322 34588999999999999654 3456778888
Q ss_pred cCCCCCccccccc
Q 033312 100 TDPYGPSIVDENL 112 (122)
Q Consensus 100 ~d~~Gps~t~~~l 112 (122)
.|-|-.+.....+
T Consensus 78 ~D~~~~~~Wv~~V 90 (196)
T PRK13793 78 VDVYNDEKWVKQV 90 (196)
T ss_pred CCccchhHHHHHH
Confidence 6665555444333
No 43
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.29 E-value=5.5e-12 Score=88.21 Aligned_cols=58 Identities=29% Similarity=0.397 Sum_probs=49.7
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
+++.|+||.+|.||..+|++|++++ ++++||++.|+..+.++ ..++.+.++|.++++.
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~~-~~~i~~~eeR~~~l~~ 58 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQKQ-KKAYHSYEHRKLILET 58 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhcC-CCCCCCHHHHHHHHHc
Confidence 4678999999999999999999998 68999999998765433 3678999999998874
No 44
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.28 E-value=1.5e-11 Score=99.36 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=54.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVV 94 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v 94 (122)
.++|++||+|||+|.||+.++++|+.++ |.++|++.. ++ ....|+++|++|+++.+.++ |.+.+
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~-d~~~v~v~~-----~~---~~~f~~~~R~~~v~~~~~~~-~nv~v 202 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC-DWLHLFVVK-----ED---ASLFSYDERFALVKQGIQDL-SNVTV 202 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC-CEEEEEEEe-----CC---CCCCCHHHHHHHHHHHhcCC-CCEEE
Confidence 5899999999999999999999999999 688888853 22 45899999999999999997 55433
No 45
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.27 E-value=5.8e-12 Score=100.68 Aligned_cols=85 Identities=29% Similarity=0.389 Sum_probs=67.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHH--HHHHhcCCCcE-EEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVE--AYIKSIKPELV-VQT 96 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~--~~l~~~~p~~~-v~~ 96 (122)
-..++..||||.+|.||-+.|++|+.+| ++|+||+.+|+-+. +|. .|+++.++|++|++ .|+.++.+... +..
T Consensus 8 ~~rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ikWVDEVV~~APyvtt 84 (358)
T KOG2803|consen 8 PVRVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKAIKWVDEVVEGAPYVTT 84 (358)
T ss_pred ceeEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhhcchhhhhhcCCCeecc
Confidence 3469999999999999999999999999 79999999998764 554 68999999999998 68888755422 223
Q ss_pred eEecCCCCCccc
Q 033312 97 EPITDPYGPSIV 108 (122)
Q Consensus 97 ~ei~d~~Gps~t 108 (122)
.+..|+||-.|-
T Consensus 85 ~~~md~y~cd~v 96 (358)
T KOG2803|consen 85 LEWMDKYGCDYV 96 (358)
T ss_pred HHHHHHhCCeEE
Confidence 344466766553
No 46
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.24 E-value=1.9e-11 Score=99.51 Aligned_cols=62 Identities=29% Similarity=0.379 Sum_probs=54.1
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHH
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~ 83 (122)
++.+++++.|+||.+|.||.++|++|+++| +.|+||+++|..+. +|. .++.+.++|.++++.
T Consensus 9 ~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g-~~Livgv~~d~~i~~~K~--~pi~~~eeR~~~l~~ 71 (353)
T PTZ00308 9 PGTIRVWVDGCFDMLHFGHANALRQARALG-DELFVGCHSDEEIMRNKG--PPVMHQEERYEALRA 71 (353)
T ss_pred CCcEEEEEEeecccCCHHHHHHHHHHHHhC-CEEEEEeCCHHHHhhcCC--CCCCCHHHHHHHHHh
Confidence 345789999999999999999999999999 68999999998764 333 479999999999974
No 47
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.22 E-value=3.5e-11 Score=86.49 Aligned_cols=63 Identities=33% Similarity=0.490 Sum_probs=52.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.+++++.|+||.+|.||..++++|++.+ +.++|+++.|+... .++...++.+.++|.++++..
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG-DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC-CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 5789999999999999999999999998 57999999987543 222225799999999988754
No 48
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.22 E-value=4.2e-11 Score=86.13 Aligned_cols=61 Identities=31% Similarity=0.410 Sum_probs=52.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
.+++++-|+||.+|.||..+|++|++++ +.++|+++.++.+.... ..++.+.++|.++++.
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~-~~~vv~~~~d~~~~~~~-~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLG-DILVVSLTSDRYVNKGP-GRPIFPEDLRAEVLAA 64 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhC-CeEEEEEeChHHhccCC-CCCCCCHHHHHHHHHc
Confidence 4679999999999999999999999999 68999999987664322 3689999999998854
No 49
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=8.2e-11 Score=97.02 Aligned_cols=59 Identities=31% Similarity=0.475 Sum_probs=51.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHH
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNV 81 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v 81 (122)
++|++.||||.+|.||+.+|.+|+.+| |+++||+++|...+ -|....|+.+.++|...+
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vL 392 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVL 392 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHH
Confidence 389999999999999999999999999 89999999998764 334457999999998765
No 50
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.02 E-value=7.3e-10 Score=88.79 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=56.5
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccc-cCCCCCCHHHHHHHHH
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQ-FAELIQPVDERMRNVE 82 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~-~~~~~~~~~~R~~~v~ 82 (122)
.|...-+++++.|.||.+|.||+..|++|+.+| |++|||+.+|+..+.++ ...|+++..+|.-.|.
T Consensus 193 ~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg-dyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvl 259 (358)
T KOG2803|consen 193 EPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG-DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVL 259 (358)
T ss_pred CCCCCCcEEEEcCchhhhccchHHHHHHHHhcc-CceEEEeecCcchhhhccCCCccchHHHHHHHHh
Confidence 444557899999999999999999999999999 79999999998776443 3469999999997775
No 51
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.02 E-value=6.8e-10 Score=92.05 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=52.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVE 82 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~ 82 (122)
.+++++.|+||.+|.||+++|++|++++ ++++||+++|+... .|+...|+.++++|.+.++
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~-~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~ 401 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLG-DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLA 401 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhC-CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHH
Confidence 5889999999999999999999999999 68999999998663 2333368999999999874
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.01 E-value=1.8e-09 Score=86.15 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=51.5
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVV 94 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v 94 (122)
-.+++.+-|+|||+|.||+.++++|.+.+ +.+.|.+-.. + .+..|+++|++|++.+++.. |.+.+
T Consensus 113 ~~~~~~~~~~FDPiH~GHl~ii~~a~~~~-d~~~V~i~~~-----~---~~~~~~e~R~~ml~~ai~~~-~~v~v 177 (297)
T cd02169 113 GKKIAAIVMNANPFTLGHRYLVEKAAAEN-DWVHLFVVSE-----D---KSLFSFADRFKLVKKGTKHL-KNVTV 177 (297)
T ss_pred CCceEEEEecCCCCchHHHHHHHHHHhhC-CeEEEEEEcC-----C---CCCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 36888899999999999999999999998 4555544321 1 34679999999999999986 65443
No 53
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.92 E-value=8.4e-09 Score=76.64 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=60.2
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
+++.|++-|.|.|+|.||+.+++.|++.. |.|+|++.++..-... ....+.-+|..|+++.+.+..-+..+-+.++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~---~nPfTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTL---KNPFTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCcccccc---cCCCCccchhHHHHHHHHhcCCCceEEEEec
Confidence 57889999999999999999999999997 8999999997643222 2346778999999999986542224455565
Q ss_pred cC
Q 033312 100 TD 101 (122)
Q Consensus 100 ~d 101 (122)
.|
T Consensus 78 ~d 79 (172)
T COG1056 78 FD 79 (172)
T ss_pred Cc
Confidence 43
No 54
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.82 E-value=1.1e-08 Score=75.75 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=43.8
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCCCc----cccccCCCCCCHHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~--d~viVgvt~d~~~----~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
+++-|+||++|.||..++++|.++++ +...+.++-++.- ..+....++.+.++|+++++..
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l 68 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL 68 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc
Confidence 57789999999999999999999973 2344445444321 1122235789999999998753
No 55
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.78 E-value=3.2e-08 Score=73.93 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=43.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCc
Q 033312 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (122)
Q Consensus 27 gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~ 92 (122)
--+|||+|.||+.++++|.+.+ +.++|++... + ....+.++|++|++.++++. |.+
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~-d~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~~-~~v 60 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAEC-DWVHLFVVSE-----D---ASLFSFDERFALVKKGTKDL-DNV 60 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHC-CceEEEEEeC-----C---CCCCCHHHHHHHHHHHhccC-CCE
Confidence 3589999999999999999998 4555544332 1 23579999999999999875 543
No 56
>PRK13671 hypothetical protein; Provisional
Probab=98.66 E-value=6.8e-08 Score=77.26 Aligned_cols=54 Identities=13% Similarity=0.243 Sum_probs=44.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 28 GTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
-+|||+|.||+.++++|++.. .|.|+++++.++..+. ...+.+.++|.+|+...
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg---~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRG---EIAVASFEKRKKIALKY 61 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCC---CCCCCCHHHHHHHHHHc
Confidence 399999999999999999985 3899999988875432 23456999999999875
No 57
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.53 E-value=1.9e-07 Score=74.77 Aligned_cols=67 Identities=25% Similarity=0.462 Sum_probs=57.1
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCc-cccccCCCCCCHHHHHHHHH--HHHHhcCCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPML-TNKQFAELIQPVDERMRNVE--AYIKSIKPE 91 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~-~~k~~~~~~~~~~~R~~~v~--~~l~~~~p~ 91 (122)
.++..|-||.+|.||..-|++|+.++. -+||||+.+|.+. +.|+ ..+++.++|.+.|+ .|+.++.|+
T Consensus 65 RVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG--~TVm~e~ERyE~lrHCryVDEVi~~ 135 (348)
T KOG2804|consen 65 RVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKG--RTVMNENERYEALRHCRYVDEVIPN 135 (348)
T ss_pred EEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccC--ceecChHHHHHHhhhhhhhhhhccC
Confidence 489999999999999999999999985 5899999999865 3443 67899999999998 688877554
No 58
>PRK07143 hypothetical protein; Provisional
Probab=98.10 E-value=1.2e-05 Score=63.83 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHH
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
...+.+++=|+||-+|.||..|+++|.+.+ +..+|...+++..-.+.....+.+.++|.+.++.
T Consensus 13 ~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~-~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~ 76 (279)
T PRK07143 13 KFEKPTFVLGGFESFHLGHLELFKKAKESN-DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLAN 76 (279)
T ss_pred CCCCeEEEEccCCcCCHHHHHHHHHHHHCC-CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHH
Confidence 345668888999999999999999999887 4555544444221011113468899999988753
No 59
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.07 E-value=1e-05 Score=64.86 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=43.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCCC----ccccccCCCCCCHHHHHHHHHHH
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPM----LTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d--~viVgvt~d~~----~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.+++=|+||-+|.||..|+++|.+.++. .-.+.++-++. +..++...++.+.++|.+.++..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~ 82 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL 82 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc
Confidence 6888899999999999999999999741 11234444432 11122235789999999987643
No 60
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.88 E-value=8.1e-05 Score=61.50 Aligned_cols=78 Identities=23% Similarity=0.196 Sum_probs=57.5
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC----cEEEE
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE----LVVQT 96 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~----~~v~~ 96 (122)
+.++--=||||+|.||..+++.|++.. .|.|+|.+...+. | ....+.+.|+++++.+++...|. +.+..
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~~---k---~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~ 257 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGLT---K---PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLP 257 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCCC---C---CCCCCHHHHHHHHHHHHhhCCCCCceEEEecc
Confidence 344445799999999999999999982 2788888877632 2 25689999999999999987442 33434
Q ss_pred eEecCCCCCc
Q 033312 97 EPITDPYGPS 106 (122)
Q Consensus 97 ~ei~d~~Gps 106 (122)
.++ ...||+
T Consensus 258 ~em-~~agpr 266 (383)
T TIGR00339 258 LAM-RYAGPR 266 (383)
T ss_pred hHh-hcCCcH
Confidence 444 556787
No 61
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.81 E-value=5.3e-05 Score=55.27 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=38.4
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCC--C--CccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~--d~viVgvt~d--~--~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.+.+++=|.||=+|.||..|+++|.+.+. +...+.++-+ + .+........+.+.++|.+.++.+
T Consensus 5 ~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~ 74 (157)
T PF06574_consen 5 KKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL 74 (157)
T ss_dssp S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT
T ss_pred CCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc
Confidence 45677889999999999999999999973 3233333333 2 122112234589999999988764
No 62
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.70 E-value=0.00017 Score=53.98 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=42.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEE-EEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 28 GTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~~d~viV-gvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
-.=||++.||..|+++|++.+ |.|+| .+..| ....|+++|++||++=++++
T Consensus 6 MNaNPFT~GH~yLiE~Aa~~~-d~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L 57 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQAAKEC-DWLHVFVVSED---------RSLFPFADRYELVKEGTADL 57 (182)
T ss_pred EcCCCCccHHHHHHHHHHHhC-CEEEEEEEccc---------cCcCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999 56665 55554 34799999999999999887
No 63
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.45 E-value=0.00028 Score=56.27 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=37.7
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhc----CeEEEEEcCCC--CccccccCCCCCCHHHHHHHHHH
Q 033312 25 VLGGTFDRLHDGHRLFLKASAELAR----DRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~a~~~~~----d~viVgvt~d~--~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
++-|+||-+|.||..|+++|.+.+. ..+++-....+ .+.... ...+.+.++|.++++.
T Consensus 2 vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~-~~~l~~~~~k~~~l~~ 65 (288)
T TIGR00083 2 LAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLT-APALTPLEDKARQLQI 65 (288)
T ss_pred EEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccC-CCCCCCHHHHHHHHHH
Confidence 4569999999999999999998753 23333332222 122111 1238899999988654
No 64
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.44 E-value=0.00029 Score=58.33 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=33.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
--|||+|+||+..++++++.....++|+|.|..+..... ..+.+--.|.+|....
T Consensus 8 aEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQRGE--PAi~dKw~RA~~AL~~ 62 (388)
T PF05636_consen 8 AEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQRGE--PAIIDKWTRAEMALKN 62 (388)
T ss_dssp ---TT--HHHHHHHHHHH---TSSEEEEEE--TTSBTSS--B-SS-HHHHHHHHHHH
T ss_pred EeECCccHHHHHHHHHHhccCCCCEEEEEECCCcccCCC--eeeCCHHHHHHHHHHc
Confidence 369999999999999999986555677777888876442 3477888888876543
No 65
>PRK13670 hypothetical protein; Provisional
Probab=97.32 E-value=0.00044 Score=57.23 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=39.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
--|||+|.||..++++|++.+...+.+++-+..++.... ..+.+..+|.+++...
T Consensus 8 aEfdg~H~GH~~~i~~a~~~a~~~~~~~Vmp~~f~qrg~--p~i~~~~~R~~~a~~~ 62 (388)
T PRK13670 8 VEYNPFHNGHLYHLNQAKKLTNADVTIAVMSGNFVQRGE--PAIVDKWTRAKMALEN 62 (388)
T ss_pred eeeCCcCHHHHHHHHHHHHHHhCCCcEEEecHHHhCCCC--CCCCCHHHHHHHHHHc
Confidence 479999999999999999986423333333555554322 2388999999987654
No 66
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=97.02 E-value=0.00099 Score=54.72 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=39.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHH
Q 033312 28 GTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
--|||+|+||..++++|.+++. |.++++++.| +.... ...+.+..+|.+|+...
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~qRg--epai~~k~~r~~~aL~~ 62 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQRG--EPAIGHKWERKKMALEG 62 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecc-hhhcC--CCccccHHHHHhhhhhc
Confidence 4699999999999999999765 4555555544 54332 24578889999988765
No 67
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.76 E-value=0.0073 Score=48.83 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=49.1
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEE-EEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIV-VGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~vi-Vgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
..|+|..--.-||+..||..|+++|+..| |-|. +.|..| ....|+++|++++++=+..+
T Consensus 144 gkkIgaIVMNANPFTLGH~YLVEqAaaqc-DwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l 203 (352)
T COG3053 144 GKKIGAIVMNANPFTLGHRYLVEQAAAQC-DWLHLFVVKED---------SSLFPYEDRLDLVKKGTADL 203 (352)
T ss_pred CCeeEEEEEeCCCccchhHHHHHHHHhhC-CEEEEEEEecc---------cccCCHHHHHHHHHHhhccC
Confidence 46788888899999999999999999999 5655 345554 24689999999999988887
No 68
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=96.75 E-value=0.0049 Score=47.47 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=50.6
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh----cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 25 VLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~a~~~~----~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
+-.|+|+|+.++|+.+.+.|+..- .-+|+=|+-+.--=.+|+ +.+.|..+|++|++.+.+. ...+.+|.+|-
T Consensus 12 ~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkK--KgLipa~hrv~~~ElAt~~-Skwl~vD~wes 87 (234)
T KOG3199|consen 12 LACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKK--KGLIPAYHRVRMVELATET-SKWLMVDGWES 87 (234)
T ss_pred EEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhc--cccchhhhHHHHHHhhhcc-ccceecchhhh
Confidence 456799999999999999999773 124444555421112332 4688999999999999884 45577776664
No 69
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=96.47 E-value=0.0066 Score=48.93 Aligned_cols=64 Identities=28% Similarity=0.427 Sum_probs=40.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeE-EEEEcCCC-Ccc---ccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRI-VVGVCDGP-MLT---NKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~v-iVgvt~d~-~~~---~k~~~~~~~~~~~R~~~v~~~ 84 (122)
...+++=|.||=+|.||..++++|.+.+. +.+ .+.++-++ +.. .......+.++++|.+.+..+
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~ 84 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY 84 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc
Confidence 44566779999999999999999997763 222 33344332 111 111123478899998877643
No 70
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=96.41 E-value=0.013 Score=46.64 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=41.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.++|++. |..-+|.||..|+++|.+.+ +.++|.+..++. .+.+.....+.+.++|.++++.+
T Consensus 22 ~~i~~v~-tmG~lH~GH~~Li~~a~~~a-~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 22 KRIGLVP-TMGALHEGHLSLVREARAEA-DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred CeEEEEE-ccCceeHHHHHHHHHHHHhC-CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 3455444 55559999999999999998 566666655532 22122223467889999988764
No 71
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.38 E-value=0.011 Score=47.14 Aligned_cols=60 Identities=23% Similarity=0.323 Sum_probs=41.3
Q ss_pred CcEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~--~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.++|+ +-|. +|.||..|+++|.+.+ +.++|.+..++. .+.......+.+.++|.++++++
T Consensus 22 ~~ig~VpTmG~---LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 22 KTVGFVPTMGN---LHDGHMSLIDRAVAEN-DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred CeEEEEECCCc---ccHHHHHHHHHHHHhC-CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 34554 4455 9999999999999998 677777766542 22222123467889999987754
No 72
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=96.22 E-value=0.016 Score=46.07 Aligned_cols=60 Identities=18% Similarity=0.306 Sum_probs=41.1
Q ss_pred CcEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCc--cccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~--~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~--~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.++|+ +-|. +|.||..|+++|.+.+ +.++|.+..++.- +.......+.+.+++.+.++.+
T Consensus 22 ~~ig~V~TmG~---LH~GH~~LI~~a~~~a-~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 22 KTIGFVPTMGA---LHEGHLSLVRRARAEN-DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred CeEEEEECCCc---ccHHHHHHHHHHHHhC-CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 34543 4455 9999999999999998 6788877665422 2121123457789999887753
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=95.89 E-value=0.027 Score=45.02 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHhcCeEEEEEcCCCCc--cccccCCCCCCHHHHHHHHHHH
Q 033312 33 LHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 33 lH~GH~~ll~~a~~~~~d~viVgvt~d~~~--~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
+|.||..|+++|.+.+ +.++|.+.-++.- +++.....+.+.++|.++++++
T Consensus 32 LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 32 LHEGHLSLVRAARARA-DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred hhHHHHHHHHHHHHhC-CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 9999999999999998 5677766655422 2111123467889999888754
No 74
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.27 E-value=0.17 Score=38.95 Aligned_cols=66 Identities=26% Similarity=0.398 Sum_probs=45.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC--cEEEEeEe
Q 033312 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEPI 99 (122)
Q Consensus 28 GtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~--~~v~~~ei 99 (122)
=|-||+|.||..|.+.|.+.+.+.|+|-+.-.. ++ ..-.+.+.|++..+.+++...|. +.+..++.
T Consensus 27 qtrnPlHraHe~l~~~a~e~~~~~lll~plvG~----~k--~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~ 94 (215)
T PF01747_consen 27 QTRNPLHRAHEYLMRRALEKAGDGLLLHPLVGP----TK--PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPL 94 (215)
T ss_dssp EESS---HHHHHHHHHHHHHHTSEEEEEEBESB-----S--TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBES
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCcEEEEeccCC----CC--cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCc
Confidence 459999999999999999997556666554332 22 34689999999999999994343 44444554
No 75
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.04 E-value=0.06 Score=43.01 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=25.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
.++|++ .|=--+|.||+.|+++|+..+ |.++|.+--++
T Consensus 22 ~~igfV-PTMGaLHeGHlsLi~~A~~~~-d~vVVSIFVNP 59 (280)
T PF02569_consen 22 KTIGFV-PTMGALHEGHLSLIRRARAEN-DVVVVSIFVNP 59 (280)
T ss_dssp SSEEEE-EE-SS--HHHHHHHHHHHHHS-SEEEEEE---G
T ss_pred CeEEEE-CCCchhhHHHHHHHHHHHhCC-CEEEEEECcCc
Confidence 445554 455678999999999999999 79999887665
No 76
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.52 E-value=0.17 Score=43.56 Aligned_cols=60 Identities=17% Similarity=0.297 Sum_probs=39.1
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHH
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
++|++ -|-=-+|.||+.|+++|++.+ |.++|.+--|+. -++.....-.-+++.-++++++
T Consensus 21 ~ig~V-PTMG~LH~GHlsLi~~A~~~~-d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~ 82 (512)
T PRK13477 21 TIGFV-PTMGALHQGHLSLIRRARQEN-DVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCES 82 (512)
T ss_pred cEEEE-CCCcchhHHHHHHHHHHHHhC-CEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHh
Confidence 55554 566679999999999999998 788888866642 1221111112455666666654
No 77
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=93.30 E-value=0.97 Score=37.19 Aligned_cols=71 Identities=25% Similarity=0.235 Sum_probs=49.9
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC--cEEEEeEe
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEPI 99 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~--~~v~~~ei 99 (122)
.++--=|-||+|.||..+.+.|++.++ +-|+|-+.-.. ++ ..-.+.+.|++..+.+++...|. ..+..++.
T Consensus 158 ~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~----~k--~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 158 RVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW----TK--PGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC----CC--CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 444457999999999999999999874 55555444332 21 34588999999999999987532 33444444
No 78
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=93.23 E-value=1 Score=37.57 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=45.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
+.++--=|.||+|.||..|.+.|.+.+ |-|++-+.-. .++ ..-.+.+.|++..+.+++...|.
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~-d~lll~plvG----~~k--~~di~~~~r~~~~~~~~~~y~p~ 249 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIV-DGLLLNPLVG----ETK--SGDIPAEVRMEAYEALLKNYYPK 249 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhc-CeEEEecCcC----CCC--CCCCCHHHHHHHHHHHHHhcCCC
Confidence 445545689999999999999999998 5455433322 221 34588999999999999965454
No 79
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.38 Score=40.02 Aligned_cols=63 Identities=25% Similarity=0.244 Sum_probs=46.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCC
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP 90 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p 90 (122)
-++++---|+||+|.||-.+-+.|++.. |.|+|-+- +-.++ ..-.+.+.|++..+.+++...|
T Consensus 183 wk~vvafQTRNp~HraHEyl~K~Al~~v-dgllv~pl----VG~tk--~gD~~~e~rm~~ye~l~~~Yyp 245 (397)
T COG2046 183 WKTVVAFQTRNPPHRAHEYLQKRALEKV-DGLLVHPL----VGATK--PGDIPDEVRMEYYEALLKHYYP 245 (397)
T ss_pred CeEEEEEecCCCchHHHHHHHHHHHHhc-CcEEEEee----ecccc--CCCchHHHHHHHHHHHHHhCCC
Confidence 4677777899999999999999999998 44444332 22222 2346789999999999988764
No 80
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=92.27 E-value=0.23 Score=39.67 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=30.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
.++|++ =|---+|.||+.|+++|++.. |.++|.+--++
T Consensus 22 k~Vg~V-PTMG~LH~GHlsLVr~A~~~~-d~VVVSIFVNP 59 (285)
T COG0414 22 KRVGLV-PTMGNLHEGHLSLVRRAKKEN-DVVVVSIFVNP 59 (285)
T ss_pred CEEEEE-cCCcccchHHHHHHHHHhhcC-CeEEEEEEeCh
Confidence 445544 467789999999999999998 78998887765
No 81
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=89.82 E-value=2.5 Score=36.72 Aligned_cols=63 Identities=21% Similarity=0.140 Sum_probs=44.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
+.++--=|.||+|.||..+.+.|.+.++..|++-+ +...+ +..-.+++.|++..+.+++.+ |.
T Consensus 187 ~~v~afqtrnP~Hr~He~l~~~a~~~~d~~lll~p----~~G~~--k~~d~~~~~r~~~~~~~~~~~-p~ 249 (568)
T PRK05537 187 RRVVAFQTRNPLHRAHEELTKRAAREVGANLLIHP----VVGMT--KPGDIDHFTRVRCYEALLDKY-PP 249 (568)
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCeEEEec----CCCCC--CCCCCCHHHHHHHHHHHHHhC-CC
Confidence 34444578999999999999999998732443322 22111 134689999999999999985 53
No 82
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=83.67 E-value=0.29 Score=41.27 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=25.6
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHh
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~ 48 (122)
.-+.++..|+||.+|.||+.+|.++.--+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 35778999999999999999999998664
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=80.16 E-value=0.84 Score=38.46 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=26.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCC
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG 59 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d 59 (122)
-.++++||||++ +-|| ++|+-|..-+ -|+.|...-
T Consensus 318 adiAFVGGSlv~-~GGH-N~LEpa~~~~--pvi~Gp~~~ 352 (419)
T COG1519 318 ADIAFVGGSLVP-IGGH-NPLEPAAFGT--PVIFGPYTF 352 (419)
T ss_pred ccEEEECCcccC-CCCC-ChhhHHHcCC--CEEeCCccc
Confidence 368999999999 7888 7777776544 677777654
No 84
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=74.93 E-value=5.2 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=29.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
.+|++ -|--.+|.||..|++++.++. ++.+|.+--++
T Consensus 25 tIgfV-PTMG~LHeGH~SLvrqs~~~~-~~tVVSIfVNP 61 (283)
T KOG3042|consen 25 TIGFV-PTMGCLHEGHASLVRQSVKEN-TYTVVSIFVNP 61 (283)
T ss_pred eEEEe-cccccccccHHHHHHHHHhhC-ceEEEEEEech
Confidence 34444 477789999999999999998 67888776654
No 85
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.07 E-value=44 Score=23.85 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=48.1
Q ss_pred CCCCCCCCCcE--EEEcccCCCCCHHHHHHHHHHHHHhcCeEEE-EEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC
Q 033312 13 SNISPDNSYGA--VVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (122)
Q Consensus 13 ~~~~~~~~~~~--v~~gGtFDplH~GH~~ll~~a~~~~~d~viV-gvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~ 89 (122)
++.+.+...++ +.+-|.+||- ++.+|+..|.|-|+| |..-++=+ . ..-..-.+.|++.+.+.+.++.
T Consensus 22 ~rmqyp~~vRiIrv~CsGrvn~~------fvl~Al~~GaDGV~v~GC~~geCH-y---~~GN~ka~rR~~~lke~l~elg 91 (132)
T COG1908 22 SRMQYPPNVRIIRVMCSGRVNPE------FVLKALRKGADGVLVAGCKIGECH-Y---ISGNYKAKRRMELLKELLKELG 91 (132)
T ss_pred ccccCCCceEEEEeeccCccCHH------HHHHHHHcCCCeEEEeccccccee-e---eccchHHHHHHHHHHHHHHHhC
Confidence 34444444444 7999999984 778888888666554 55444311 1 1223567899999999999874
Q ss_pred --CCcEEEEeEe
Q 033312 90 --PELVVQTEPI 99 (122)
Q Consensus 90 --p~~~v~~~ei 99 (122)
| -.++...|
T Consensus 92 ie~-eRv~~~wi 102 (132)
T COG1908 92 IEP-ERVRVLWI 102 (132)
T ss_pred CCc-ceEEEEEE
Confidence 3 24444454
No 86
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=53.01 E-value=12 Score=25.30 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCCCCCcccccccceEEEccc
Q 033312 50 DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVRYV 120 (122)
Q Consensus 50 d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~~Gps~t~~~l~~lvvs~e 120 (122)
+.+|-|+|++. +. --..+|.||+..+ +..++|+-.+.+.+. .-|. +++-++|+||+++
T Consensus 7 e~~I~GiT~~G----k~--FRPSDWaERL~gv---la~F~~~~rl~Ys~~---~~P~-~~~GvkcVvVd~~ 64 (92)
T PF12112_consen 7 EIVIQGITSDG----KT--FRPSDWAERLCGV---LASFRPDHRLSYSPY---VRPM-VINGVKCVVVDER 64 (92)
T ss_dssp EEEEEEEETTS-----B---S-TTHHHHHHHT---T-EE-SSSSEE--TT---EEE---BTTB--EEEETH
T ss_pred EEEEEeEcCCC----CC--cCCccHHHHHHHH---HHccCCCCceEecCc---ccce-EECCEEEEEEccH
Confidence 57888999863 22 2237899999865 556667544433222 2243 4788999999875
No 87
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=52.10 E-value=1.1e+02 Score=25.67 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=33.9
Q ss_pred EEEEcc---cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC-Cccc---cccCCCCCCHHHHHHHHHHHH
Q 033312 23 AVVLGG---TFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP-MLTN---KQFAELIQPVDERMRNVEAYI 85 (122)
Q Consensus 23 ~v~~gG---tFDplH~GH~~ll~~a~~~~~--d~viVgvt~d~-~~~~---k~~~~~~~~~~~R~~~v~~~l 85 (122)
..++.| |-+.+|.||+-.+...+.+-+ -.+++.+.+.. .+.. |....+..+.++..+.+..+.
T Consensus 34 ~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~ 105 (410)
T PRK13354 34 LTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYT 105 (410)
T ss_pred cEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHH
Confidence 344445 666799999888877777632 34555553321 1211 111234567666555555443
No 88
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=47.60 E-value=11 Score=29.36 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=31.8
Q ss_pred CCCcEEEEcc--cCCCCCH----HHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 19 NSYGAVVLGG--TFDRLHD----GHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 19 ~~~~~v~~gG--tFDplH~----GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
.+..++++|| ||+.++. |=..+++++.+.| .+++|.+...
T Consensus 83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G--~~YiG~SAGA 128 (224)
T COG3340 83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAG--TPYIGWSAGA 128 (224)
T ss_pred hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcC--CceEEeccCc
Confidence 3477888888 9999975 6677888888887 7899988764
No 89
>PLN02486 aminoacyl-tRNA ligase
Probab=46.84 E-value=84 Score=26.17 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.3
Q ss_pred cCCCCCHHHHHHHHHHHHHh---cCeEEEEEcCC
Q 033312 29 TFDRLHDGHRLFLKASAELA---RDRIVVGVCDG 59 (122)
Q Consensus 29 tFDplH~GH~~ll~~a~~~~---~d~viVgvt~d 59 (122)
|-+.+|.||+..+...+.+- .-.++|.++++
T Consensus 83 Sg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~ 116 (383)
T PLN02486 83 SSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDD 116 (383)
T ss_pred CCccccHHHHHHHHHHHHHHHhCCCeEEEEecCH
Confidence 55679999998888777653 23666777765
No 90
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=46.80 E-value=42 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.2
Q ss_pred CCcEEEEc-ccCCCCCHHHHHHHHHHHHHhcCeEEEEE
Q 033312 20 SYGAVVLG-GTFDRLHDGHRLFLKASAELARDRIVVGV 56 (122)
Q Consensus 20 ~~~~v~~g-GtFDplH~GH~~ll~~a~~~~~d~viVgv 56 (122)
+.++++|| ||++|.|-=--.-+.+|.+...|-++.+-
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~at 161 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKAT 161 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEec
Confidence 36776655 59999999888888888888755554444
No 91
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=38.55 E-value=64 Score=22.36 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=44.9
Q ss_pred ccCCCCCCCCCcE--EEEcccCCCCCHHHHHHHHHHHHHhcCeEEE-EEcCCCCccccccCCCCCCHHHHHHHHHHHHHh
Q 033312 11 VNSNISPDNSYGA--VVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS 87 (122)
Q Consensus 11 ~~~~~~~~~~~~~--v~~gGtFDplH~GH~~ll~~a~~~~~d~viV-gvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~ 87 (122)
..++.+.+...++ +-+.|..||. ++.+|++.|.|-|+| |-..+.=. +..-....+.|++.+++.++.
T Consensus 19 g~~~~~~p~~vriIrvpC~Grv~~~------~il~Af~~GADGV~V~gC~~g~Ch----~~~Gn~~a~~Rv~~~k~~L~~ 88 (124)
T PF02662_consen 19 GVSRLQYPPNVRIIRVPCSGRVDPE------FILRAFEKGADGVLVAGCHPGDCH----YREGNYRAEKRVERLKKLLEE 88 (124)
T ss_pred hhccCCCCCCeEEEEccCCCccCHH------HHHHHHHcCCCEEEEeCCCCCCCC----cchhhHHHHHHHHHHHHHHHH
Confidence 3345555554544 6888999986 567788888777777 44433211 112234568899999999988
Q ss_pred cC
Q 033312 88 IK 89 (122)
Q Consensus 88 ~~ 89 (122)
+.
T Consensus 89 ~G 90 (124)
T PF02662_consen 89 LG 90 (124)
T ss_pred cC
Confidence 74
No 92
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=38.02 E-value=67 Score=25.29 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=33.0
Q ss_pred cCCCCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEE
Q 033312 12 NSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVV 54 (122)
Q Consensus 12 ~~~~~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viV 54 (122)
.+...+.+++++++|-|+ |+-.--..|++.|+.+-+..|-|
T Consensus 99 khRqnk~~~~riVvFvGS--pi~e~ekeLv~~akrlkk~~Vai 139 (259)
T KOG2884|consen 99 KHRQNKNQKQRIVVFVGS--PIEESEKELVKLAKRLKKNKVAI 139 (259)
T ss_pred HhhcCCCcceEEEEEecC--cchhhHHHHHHHHHHHHhcCeeE
Confidence 345677788999999999 99888889999999986544443
No 93
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=34.00 E-value=1.9e+02 Score=22.51 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC
Q 033312 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP 60 (122)
Q Consensus 29 tFDplH~GH~~ll~~a~~~~~--d~viVgvt~d~ 60 (122)
|-+.+|.||+.-+.....+-. -.+++-+.+..
T Consensus 10 Tg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~ 43 (269)
T cd00805 10 TAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDAT 43 (269)
T ss_pred CCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCe
Confidence 667899999988877766642 36777777654
No 94
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=30.00 E-value=31 Score=26.49 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.7
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELA 48 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~ 48 (122)
|.+||.+|+. .||+.++.+..+.+
T Consensus 99 Ga~GGR~DH~-l~nl~ll~~~~~~~ 122 (212)
T COG1564 99 GALGGRLDHA-LANLFLLLRPAKSG 122 (212)
T ss_pred ecCCChHHHH-HHHHHHHHhhhhcc
Confidence 5679999999 99999999986665
No 95
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=29.02 E-value=1e+02 Score=24.65 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCeEEEEEcCCC--CccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCCCCCcccccccc
Q 033312 36 GHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLE 113 (122)
Q Consensus 36 GH~~ll~~a~~~~~d~viVgvt~d~--~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~~Gps~t~~~l~ 113 (122)
.|+.+|.++...+.=.|-|.++++. +.+ .......+.++|++.+.++.+.--| +.+.+-+| =|..++++++
T Consensus 130 RDld~l~~~~~~~~v~V~~Sitt~d~~l~k--~~EP~apsp~~Ri~al~~l~eaGi~-~~v~v~PI----iP~~~d~e~e 202 (297)
T COG1533 130 RDLDLLLELAERGKVRVAVSITTLDEELAK--ILEPRAPSPEERLEALKELSEAGIP-VGLFVAPI----IPGLNDEELE 202 (297)
T ss_pred hhHHHHHhhhhccceEEEEEeecCcHHHHH--hcCCCCcCHHHHHHHHHHHHHCCCe-EEEEEecc----cCCCChHHHH
Confidence 3556666655553112333344432 211 1112245789999999888776433 33433343 4556665544
No 96
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=27.41 E-value=2.4e+02 Score=22.44 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=37.0
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
++.-|| -|.|=.++++.|++.+.+++.-.+..=.+ .-..++|++-+..++++..+.
T Consensus 169 vvItGC---sH~GI~niv~~~~~~~g~rv~~ViGGFHL---------~~~~~~~l~~~~~~l~el~v~ 224 (259)
T COG1237 169 VVITGC---SHPGIVNIVEWAKERSGDRVKAVIGGFHL---------IGASEERLEEVADYLKELGVE 224 (259)
T ss_pred EEEEcC---CcccHHHHHHHHHHhccceeEEEeeeecc---------CCCcHHHHHHHHHHHHhcCCC
Confidence 444454 69999999999999986666665554322 223346776666777766543
No 97
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.60 E-value=2e+02 Score=24.26 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=21.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CeEEEEEcC
Q 033312 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCD 58 (122)
Q Consensus 29 tFDplH~GH~~ll~~a~~~~~--d~viVgvt~ 58 (122)
|-+-+|.||+..+...+.+-+ -+++|-+.+
T Consensus 42 Ta~slHlGhlv~l~kL~~fQ~aGh~~ivLigd 73 (401)
T COG0162 42 TAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGD 73 (401)
T ss_pred CCCccchhhHHHHHHHHHHHHCCCeEEEEecc
Confidence 667799999999988887742 345554443
No 98
>PF04978 DUF664: Protein of unknown function (DUF664); InterPro: IPR007061 The proteins in this family of unknown function contain several conserved histidines at their N terminus that may form a metal binding site.; PDB: 2OU6_A.
Probab=26.59 E-value=37 Score=23.98 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHH
Q 033312 34 HDGHRLFLKASA 45 (122)
Q Consensus 34 H~GH~~ll~~a~ 45 (122)
|.||+.++++..
T Consensus 137 H~GhadilRe~l 148 (150)
T PF04978_consen 137 HAGHADILRELL 148 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChhHHHHHHHHh
Confidence 899999998764
No 99
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=23.98 E-value=76 Score=27.37 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=13.5
Q ss_pred EEEcc--cCCCCCHHHHHH
Q 033312 24 VVLGG--TFDRLHDGHRLF 40 (122)
Q Consensus 24 v~~gG--tFDplH~GH~~l 40 (122)
.+++| .+|++|.||..-
T Consensus 26 mYvCGpTvy~~~HiGhar~ 44 (490)
T PRK14536 26 LYGCGPTVYNYAHIGNLRT 44 (490)
T ss_pred EEeeCCccCCCcccchhHH
Confidence 46666 699999999874
No 100
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=23.66 E-value=20 Score=24.59 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.6
Q ss_pred EEEcccCCCC
Q 033312 24 VVLGGTFDRL 33 (122)
Q Consensus 24 v~~gGtFDpl 33 (122)
+..|||||++
T Consensus 50 aAiGGTfd~~ 59 (102)
T PF14034_consen 50 AAIGGTFDTF 59 (102)
T ss_pred HHHhcCchHH
Confidence 5789999986
No 101
>PF02457 DisA_N: DisA bacterial checkpoint controller nucleotide-binding; InterPro: IPR003390 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. This domain is the first and is a globular, nucleotide-binding region; the next 146-289 residues constitute the DisA-linker family, IPR018906 from INTERPRO that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), which thus forms a spine like-linker between domains 1 and 3. The C-terminal residues, of domain 3, are represented by family HHH, IPR000445 from INTERPRO the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis.; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A 2FB5_A.
Probab=23.02 E-value=44 Score=23.27 Aligned_cols=8 Identities=38% Similarity=0.256 Sum_probs=5.9
Q ss_pred eEEEcccc
Q 033312 114 AIVVRYVV 121 (122)
Q Consensus 114 ~lvvs~e~ 121 (122)
+|||||||
T Consensus 103 vivVSEe~ 110 (122)
T PF02457_consen 103 VIVVSEET 110 (122)
T ss_dssp EEEE-TTT
T ss_pred EEEEEccC
Confidence 78899986
No 102
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=22.26 E-value=53 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=17.5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAEL 47 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~ 47 (122)
++.----||+|+||..|.+...+.
T Consensus 418 vfafqlrnpvhnghallm~dt~~~ 441 (627)
T KOG4238|consen 418 VFAFQLRNPVHNGHALLMQDTRRR 441 (627)
T ss_pred EEEeeecCccccchhhHhHhHHHH
Confidence 343345689999999999766654
No 103
>KOG4616 consensus Mitochondrial ribosomal protein L55 [Translation, ribosomal structure and biogenesis]
Probab=21.61 E-value=1.7e+02 Score=20.57 Aligned_cols=61 Identities=18% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC---cEEEEeEecCCCCCccccc
Q 033312 37 HRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE---LVVQTEPITDPYGPSIVDE 110 (122)
Q Consensus 37 H~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~---~~v~~~ei~d~~Gps~t~~ 110 (122)
|..|+..|.+.- ...+.+.|++ -.++++|-......+..+... -.|...-| .|.|.+..++
T Consensus 10 haklank~lk~h---------h~~lvkekgr---kisfeernna~raalgki~rrdy~h~y~~kfi-~pdgstimip 73 (137)
T KOG4616|consen 10 HAKLANKALKQH---------HCILVKEKGR---KISFEERNNAARAALGKIHRRDYCHLYPTKFI-QPDGSTIMIP 73 (137)
T ss_pred HHHHHHHHHHHH---------hhhhhhhccc---ccchhhhhhHHHHHHHHHHHHhHHhhcceeEE-cCCCCeEeee
Confidence 777888887763 2234455542 378999988877776665211 22333444 6778776554
No 104
>TIGR00159 conserved hypothetical protein TIGR00159. These proteins have no detectable global or local homology to any protein of known function. Members are restricted to the bacteria and found broadly in lineages other than the Proteobacteria.
Probab=21.59 E-value=47 Score=25.57 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=7.2
Q ss_pred eEEEcccc
Q 033312 114 AIVVRYVV 121 (122)
Q Consensus 114 ~lvvs~e~ 121 (122)
++||||||
T Consensus 172 ~ivVSEEt 179 (211)
T TIGR00159 172 TIIVSEET 179 (211)
T ss_pred EEEEEccC
Confidence 78999997
No 105
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=20.56 E-value=24 Score=24.56 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELA 48 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~ 48 (122)
|.+||.||+. .|++.++.+..+.+
T Consensus 92 Ga~GgR~DH~-lanl~~l~~~~~~~ 115 (123)
T PF04263_consen 92 GALGGRFDHT-LANLNLLYKYKKRG 115 (123)
T ss_dssp S-SSSSHHHH-HHHHHHHHHHHTTT
T ss_pred ecCCCcHHHH-HHHHHHHHHHHHcC
Confidence 5667889988 99999998888554
No 106
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=20.46 E-value=1.9e+02 Score=22.44 Aligned_cols=31 Identities=26% Similarity=0.205 Sum_probs=22.5
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCeEEEEEcCCC
Q 033312 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGP 60 (122)
Q Consensus 29 tFDplH~GH~~ll~~a~~~~--~d~viVgvt~d~ 60 (122)
|-+ +|.||+-.+.....+- .-.+++-+++..
T Consensus 15 Tg~-lHlG~l~~~~~~~~lq~~g~~~~i~iaD~~ 47 (292)
T PF00579_consen 15 TGD-LHLGHLVPIMKLIWLQKAGFKVIILIADLH 47 (292)
T ss_dssp SSS--BHHHHHHHHHHHHHHHTTSEEEEEEEHHH
T ss_pred CCc-ccchHHHHHHHHHHHHhcCCccceEecchh
Confidence 677 9999999888877764 247777777654
No 107
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=20.19 E-value=3.3e+02 Score=24.58 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=41.9
Q ss_pred CCCCCCCCcEE-EEcc-cCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHh
Q 033312 14 NISPDNSYGAV-VLGG-TFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS 87 (122)
Q Consensus 14 ~~~~~~~~~~v-~~gG-tFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~ 87 (122)
+.++.++|.-+ ++-+ .=|.+|+||-.....+++.....+++=...+.=+.. ..+......+..++-.|+..
T Consensus 573 nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g---~~~~~~~A~~~a~~~afl~r 645 (648)
T COG1505 573 NLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGG---AAPTAEIARELADLLAFLLR 645 (648)
T ss_pred cCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccC---CCChHHHHHHHHHHHHHHHH
Confidence 45566677654 4444 468999999998888887754455555544432211 12333335566666666653
Done!