Query 033312
Match_columns 122
No_of_seqs 137 out of 1063
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:38:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do8_A Phosphopantetheine aden 99.9 7.6E-27 2.6E-31 167.8 8.5 95 23-122 2-97 (148)
2 3h05_A Uncharacterized protein 99.8 1.4E-20 4.6E-25 138.5 2.5 88 21-115 2-92 (177)
3 1yum_A 'probable nicotinate-nu 99.8 7.8E-19 2.7E-23 134.4 7.4 87 21-113 23-110 (242)
4 2h29_A Probable nicotinate-nuc 99.8 5.5E-19 1.9E-23 129.7 6.0 88 21-113 2-90 (189)
5 3nbk_A Phosphopantetheine aden 99.7 4.1E-18 1.4E-22 125.8 8.2 72 19-98 19-90 (177)
6 1kam_A Deamido-NAD(+), nicotin 99.7 2.3E-18 8E-23 126.8 6.8 88 21-113 7-95 (194)
7 3nd5_A Phosphopantetheine aden 99.7 3E-18 1E-22 125.6 6.4 78 21-113 2-80 (171)
8 3f3m_A Phosphopantetheine aden 99.7 2.8E-18 9.7E-23 125.4 6.2 78 21-113 3-80 (168)
9 2qtr_A Nicotinate (nicotinamid 99.7 2.4E-18 8.3E-23 125.5 5.7 88 21-113 2-90 (189)
10 1vlh_A Phosphopantetheine aden 99.7 4.5E-18 1.5E-22 124.1 6.8 81 19-114 10-90 (173)
11 1k4m_A NAMN adenylyltransferas 99.7 5E-18 1.7E-22 126.8 6.1 87 22-114 3-91 (213)
12 3nv7_A Phosphopantetheine aden 99.7 3.5E-17 1.2E-21 118.5 8.8 69 21-97 2-70 (157)
13 1nup_A FKSG76; NAD biosynthesi 99.7 1.1E-17 3.7E-22 128.4 4.6 89 20-115 5-100 (252)
14 4f3r_A Phosphopantetheine aden 99.7 4.4E-17 1.5E-21 118.4 7.0 70 20-98 4-73 (162)
15 1kqn_A Nmnat, nicotinamide mon 99.7 4.7E-17 1.6E-21 127.0 5.0 90 19-115 6-102 (279)
16 1qjc_A Phosphopantetheine aden 99.7 1.3E-16 4.4E-21 113.1 6.7 70 21-98 1-70 (158)
17 1o6b_A Phosphopantetheine aden 99.6 4E-16 1.4E-20 112.3 7.9 69 21-97 2-70 (169)
18 2qjt_B Nicotinamide-nucleotide 99.6 2.2E-16 7.5E-21 123.9 7.0 88 20-111 6-95 (352)
19 3k9w_A Phosphopantetheine aden 99.6 1.1E-15 3.9E-20 113.3 9.9 71 19-97 20-90 (187)
20 1lw7_A Transcriptional regulat 99.6 5.6E-16 1.9E-20 123.1 7.6 82 21-107 2-89 (365)
21 1od6_A PPAT, phosphopantethein 99.6 7.8E-16 2.7E-20 109.4 7.0 79 21-113 1-79 (160)
22 2b7l_A Glycerol-3-phosphate cy 99.5 6.4E-15 2.2E-19 102.1 5.7 65 21-88 1-65 (132)
23 1coz_A Protein (glycerol-3-pho 99.5 4.2E-15 1.4E-19 102.5 4.4 65 21-88 1-65 (129)
24 1f9a_A Hypothetical protein MJ 99.5 3.8E-14 1.3E-18 102.2 7.4 61 23-88 2-63 (168)
25 3elb_A Ethanolamine-phosphate 99.5 2.1E-14 7.2E-19 115.1 6.0 71 16-88 193-266 (341)
26 3hl4_A Choline-phosphate cytid 99.5 2E-14 6.8E-19 110.2 5.1 66 16-83 71-138 (236)
27 1ej2_A Nicotinamide mononucleo 99.5 1.2E-13 4.2E-18 100.7 7.8 62 22-88 4-66 (181)
28 3glv_A Lipopolysaccharide core 99.5 4.9E-14 1.7E-18 99.6 5.0 61 21-83 2-62 (143)
29 2qjo_A Bifunctional NMN adenyl 99.4 1.5E-13 5.2E-18 107.0 5.9 65 20-88 6-70 (341)
30 3elb_A Ethanolamine-phosphate 99.4 2.4E-13 8.1E-18 109.0 6.2 62 19-83 5-67 (341)
31 1jhd_A Sulfate adenylyltransfe 98.9 2.9E-09 1E-13 86.7 8.4 82 22-109 193-278 (396)
32 1v47_A ATP sulfurylase; produc 98.8 2.4E-09 8.3E-14 85.9 5.2 81 22-109 156-239 (349)
33 2x0k_A Riboflavin biosynthesis 98.6 1.3E-07 4.5E-12 75.4 7.0 62 22-83 16-83 (338)
34 2ejc_A Pantoate--beta-alanine 98.5 2.2E-07 7.5E-12 72.6 6.9 61 21-83 22-84 (280)
35 1mrz_A Riboflavin kinase/FMN a 98.5 7.2E-08 2.5E-12 75.6 3.4 59 24-83 2-65 (293)
36 3gmi_A UPF0348 protein MJ0951; 98.1 1E-05 3.5E-10 65.1 8.0 60 20-84 51-112 (357)
37 3op1_A Macrolide-efflux protei 98.0 1.1E-05 3.8E-10 63.7 6.3 64 21-84 20-91 (308)
38 1v8f_A Pantoate-beta-alanine l 97.0 0.0022 7.5E-08 49.9 7.7 56 24-83 22-79 (276)
39 3ag6_A Pantothenate synthetase 96.7 0.007 2.4E-07 47.2 8.2 60 21-84 23-86 (283)
40 3q12_A Pantoate--beta-alanine 96.3 0.0042 1.4E-07 48.6 4.9 36 21-60 25-62 (287)
41 3cov_A Pantothenate synthetase 96.3 0.0045 1.5E-07 48.7 5.0 59 24-83 35-96 (301)
42 3inn_A Pantothenate synthetase 96.3 0.022 7.5E-07 45.0 8.8 60 21-84 43-106 (314)
43 3uk2_A Pantothenate synthetase 96.0 0.013 4.5E-07 45.7 6.2 61 21-83 22-84 (283)
44 1g8f_A Sulfate adenylyltransfe 95.9 0.044 1.5E-06 45.7 9.3 63 22-91 189-251 (511)
45 1r6x_A ATP:sulfate adenylyltra 95.9 0.034 1.2E-06 45.1 8.3 61 22-88 188-248 (395)
46 2gks_A Bifunctional SAT/APS ki 95.7 0.045 1.5E-06 45.7 8.4 63 22-91 164-227 (546)
47 1m8p_A Sulfate adenylyltransfe 95.3 0.032 1.1E-06 46.9 6.2 62 23-91 192-253 (573)
48 3mxt_A Pantothenate synthetase 94.5 0.079 2.7E-06 41.3 6.1 60 21-83 25-86 (285)
49 3n8h_A Pantothenate synthetase 93.7 0.11 3.8E-06 40.1 5.5 39 20-60 23-61 (264)
50 3cr8_A Sulfate adenylyltranfer 91.0 1.2 4.2E-05 37.2 8.9 70 22-99 165-236 (552)
51 1x6v_B Bifunctional 3'-phospho 84.8 4 0.00014 34.8 8.3 64 22-91 413-483 (630)
52 2l9d_A Uncharacterized protein 55.8 7.6 0.00026 25.9 2.5 58 50-120 12-69 (108)
53 3h3e_A Uncharacterized protein 51.2 42 0.0014 25.1 6.3 57 23-91 174-230 (267)
54 4dlp_A Aminoacyl-tRNA syntheta 40.4 15 0.00052 30.0 2.5 18 22-39 26-46 (536)
55 1yi8_B Tryptophanyl-tRNA synth 30.8 34 0.0012 26.7 3.0 30 29-59 32-63 (351)
56 2zp1_A Tyrosyl-tRNA synthetase 25.3 63 0.0022 24.7 3.6 29 32-60 40-70 (314)
57 2d5b_A Methionyl-tRNA syntheta 24.6 39 0.0013 27.0 2.4 18 22-39 4-24 (500)
58 2cya_A Tyrosyl-tRNA synthetase 24.5 52 0.0018 25.8 3.0 28 32-59 47-76 (364)
59 2dlc_X Tyrosyl-tRNA synthetase 23.8 69 0.0024 25.3 3.6 29 30-58 46-79 (394)
60 3kfl_A Methionyl-tRNA syntheta 23.5 38 0.0013 27.9 2.1 20 20-39 25-47 (564)
61 3c8z_A Cysteinyl-tRNA syntheta 21.4 56 0.0019 25.8 2.7 17 23-39 41-59 (414)
62 3h99_A Methionyl-tRNA syntheta 21.2 46 0.0016 27.3 2.2 21 20-40 17-40 (560)
63 3foc_A Tryptophanyl-tRNA synth 20.3 2.1E+02 0.0073 23.2 5.9 37 23-59 92-134 (451)
No 1
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.94 E-value=7.6e-27 Score=167.77 Aligned_cols=95 Identities=31% Similarity=0.537 Sum_probs=83.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHH-HhcCCCcEEEEeEecC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI-KSIKPELVVQTEPITD 101 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l-~~~~p~~~v~~~ei~d 101 (122)
+|++||||||+|.||+.++++|++++.|+|+|+++++++++++ ..++.++++|++|++.++ +.+.+ .+.+.+|+|
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~--~~~~~~~~~R~~ml~~a~~~~~~~--~~~i~~i~D 77 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR--IRSVLPFAIRAENVKRYVMRKYGF--EPEIVKITN 77 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHH--SCCCSCHHHHHHHHHHHHHHHHSS--CCEEEEECS
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCcccccc--CCCCCCHHHHHHHHHHHHhcccCC--cEEEEeecC
Confidence 5899999999999999999999999768999999999876422 357899999999999999 87754 577789999
Q ss_pred CCCCcccccccceEEEccccC
Q 033312 102 PYGPSIVDENLEAIVVRYVVK 122 (122)
Q Consensus 102 ~~Gps~t~~~l~~lvvs~e~~ 122 (122)
+|||+. ++++||||||+||.
T Consensus 78 ~~g~~~-~~~~d~ivvs~Et~ 97 (148)
T 3do8_A 78 PYGKTL-DVDFEYLVVSPETY 97 (148)
T ss_dssp TTTTTT-TSCCSEEEECTTTH
T ss_pred CCCCCC-CCCCCEEEEChhhc
Confidence 999997 59999999999983
No 2
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.79 E-value=1.4e-20 Score=138.53 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=67.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~-p~~~v~~~ei 99 (122)
+++|++||||||+|.||+.+++ |++.+ |+|+++++.++. .| ....+.++|++|++.+++... |.+.++.+|+
T Consensus 2 ~~igi~gGsFdPih~GHl~i~~-a~~~~-d~v~~~p~~~~~--~k---~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~ 74 (177)
T 3h05_A 2 KKIAIFGSAFNPPSLGHKSVIE-SLSHF-DLVLLEPSIAHA--WG---KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQ 74 (177)
T ss_dssp CEEEEEEECCSSCCHHHHHHHT-TCTTS-SEEEEEECC------------CCCHHHHHHHHHHHHHHHCCTTEEECCHHH
T ss_pred cEEEEEEeccchhhHHHHHHHH-HHHHC-CEEEEEECCCCC--CC---CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhh
Confidence 5789999999999999999998 77666 899999998632 22 357899999999999999863 4677777776
Q ss_pred c-CCCC-CcccccccceE
Q 033312 100 T-DPYG-PSIVDENLEAI 115 (122)
Q Consensus 100 ~-d~~G-ps~t~~~l~~l 115 (122)
. .+.| |+||++||+.+
T Consensus 75 ~l~~~~~~syT~dTl~~l 92 (177)
T 3h05_A 75 ALYQPGQSVTTYALLEKI 92 (177)
T ss_dssp HHC----CCCHHHHHHHH
T ss_pred hcccCCCCcchHHHHHHH
Confidence 3 1346 99999998754
No 3
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.76 E-value=7.8e-19 Score=134.39 Aligned_cols=87 Identities=24% Similarity=0.255 Sum_probs=75.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
++++++||||||+|.||+.++++|++.+ .|+|+|+++.+++.+ . .++.++++|++|++.+++.. |.+.++.+|+
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~K--~--~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e~ 97 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHR--E--TPQVSAAQRLAMVERAVAGV-ERLTVDPREL 97 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGGG--S--CTTCCHHHHHHHHHHHHTTC-TTEEECCGGG
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCCC--C--CCCCCHHHHHHHHHHHhcCC-CeEEEeeeee
Confidence 5689999999999999999999999987 379999999987543 2 35789999999999999886 7888888998
Q ss_pred cCCCCCcccccccc
Q 033312 100 TDPYGPSIVDENLE 113 (122)
Q Consensus 100 ~d~~Gps~t~~~l~ 113 (122)
++.||+||+++++
T Consensus 98 -~~~~~sytvdtl~ 110 (242)
T 1yum_A 98 -QRDKPSYTIDTLE 110 (242)
T ss_dssp -GSSSSCCHHHHHH
T ss_pred -cCCCCCCHHHHHH
Confidence 6779999999875
No 4
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.76 E-value=5.5e-19 Score=129.67 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=75.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
++++++||||||+|.||+.++++|++.+. |.+++.++.++..+.+ .++.++++|++|++.+++.. |.+.++.+|+
T Consensus 2 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~m~~~a~~~~-~~v~v~~~e~ 77 (189)
T 2h29_A 2 KKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKH---HDFIDVQHRLTMIQMIIDEL-GFGDICDDEI 77 (189)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCC---CSSCCCHHHHHHHHHHHHHH-TCCEECCHHH
T ss_pred ceEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCCcC---CCCCCHHHHHHHHHHHHcCC-CCEEEehHHh
Confidence 47899999999999999999999999863 7888888887765432 35789999999999999986 7889998998
Q ss_pred cCCCCCcccccccc
Q 033312 100 TDPYGPSIVDENLE 113 (122)
Q Consensus 100 ~d~~Gps~t~~~l~ 113 (122)
++.||+||+++++
T Consensus 78 -~~~~~syt~dtl~ 90 (189)
T 2h29_A 78 -KRGGQSYTYDTIK 90 (189)
T ss_dssp -HHCSBCCHHHHHH
T ss_pred -cCCCCCCHHHHHH
Confidence 5679999998876
No 5
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.74 E-value=4.1e-18 Score=125.76 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=61.9
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
.+|+++++||||||+|.||+.++++|++++ |+|+|+++.++ .| .+..+.++|++|++.+++.. |.+.++.++
T Consensus 19 ~~mki~i~~GsFDPiH~GHl~ii~~A~~~~-D~Viv~v~~np---~K---~~~~s~eeR~~mv~~a~~~~-~~v~V~~~e 90 (177)
T 3nbk_A 19 SHMTGAVCPGSFDPVTLGHVDIFERAAAQF-DEVVVAILVNP---AK---TGMFDLDERIAMVKESTTHL-PNLRVQVGH 90 (177)
T ss_dssp -CCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCCT---TS---CCSSCHHHHHHHHHHHCTTC-TTEEEEECC
T ss_pred CCCEEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHhCCC-CCEEEEecC
Confidence 568999999999999999999999999999 89999999764 33 36899999999999999886 777776544
No 6
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.74 E-value=2.3e-18 Score=126.77 Aligned_cols=88 Identities=24% Similarity=0.261 Sum_probs=70.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
++++++||||||+|.||+.++++|++.+. +.++++++.++..+. ...+.+.++|++|++.+++.. |.+.++.+|+
T Consensus 7 ~~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~---~~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e~ 82 (194)
T 1kam_A 7 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQ---NEDYTDSFHRVEMLKLAIQSN-PSFKLELVEM 82 (194)
T ss_dssp CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTC-TTEEECCGGG
T ss_pred cEEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCcC---CcCCCCHHHHHHHHHHHHcCC-CCeEEeHHHh
Confidence 47899999999999999999999999873 789999997765432 135789999999999999986 7788888888
Q ss_pred cCCCCCcccccccc
Q 033312 100 TDPYGPSIVDENLE 113 (122)
Q Consensus 100 ~d~~Gps~t~~~l~ 113 (122)
++.|++||.++++
T Consensus 83 -~~~~~~~t~~~l~ 95 (194)
T 1kam_A 83 -EREGPSYTFDTVS 95 (194)
T ss_dssp -STTCCCSHHHHHH
T ss_pred -cCCCCCChHHHHH
Confidence 6778999988765
No 7
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.73 E-value=3e-18 Score=125.57 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=61.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVV-QTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v-~~~ei 99 (122)
|++|++||||||+|.||+.++++|++++ |+|+|+++.++ .| .++.+.++|++|++.+++.. |.+.+ +.++
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~-D~viv~v~~~~---~K---~~~~~~~~R~~ml~~a~~~~-~~v~v~~~~e- 72 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF-DEVIIGVFINT---SK---QTLFTPEEKKYLIEEATKEM-PNVRVIMQET- 72 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEEC------------CCCHHHHHHHHHHHHTTC-TTEEEEEECS-
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC-CCeEEEEecCC---CC---CCCCCHHHHHHHHHHHHccC-CCEEEeeCCC-
Confidence 6899999999999999999999999999 89999997653 23 36899999999999999886 77766 5444
Q ss_pred cCCCCCcccccccc
Q 033312 100 TDPYGPSIVDENLE 113 (122)
Q Consensus 100 ~d~~Gps~t~~~l~ 113 (122)
+||.++++
T Consensus 73 ------~~tvd~~~ 80 (171)
T 3nd5_A 73 ------QLTVESAK 80 (171)
T ss_dssp ------SCHHHHHH
T ss_pred ------CcHHHHHH
Confidence 36655543
No 8
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.73 E-value=2.8e-18 Score=125.37 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=63.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEec
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~ 100 (122)
+++|++||||||+|.||+.++++|++++ |+|+|+++.++ .| .++.+.++|++|++.+++.. |.+.++.+|
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~-d~viv~v~~~p---~K---~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e-- 72 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF-DEIHVCVLKNS---KK---EGTFSLEERMDLIEQSVKHL-PNVKVHQFS-- 72 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS-SEEEEEECC-----------CCSCHHHHHHHHHHHTTTC-TTEEEEECC--
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhC-CEEEEEEcCCC---CC---CCCCCHHHHHHhHHHHhcCC-CCEEEEEcC--
Confidence 5799999999999999999999999999 89999999754 23 46899999999999999886 777766555
Q ss_pred CCCCCcccccccc
Q 033312 101 DPYGPSIVDENLE 113 (122)
Q Consensus 101 d~~Gps~t~~~l~ 113 (122)
| ||.++++
T Consensus 73 ---~--~tvd~~~ 80 (168)
T 3f3m_A 73 ---G--LLVDYCE 80 (168)
T ss_dssp ---S--CHHHHHH
T ss_pred ---C--CHHHHHH
Confidence 3 7776654
No 9
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.73 E-value=2.4e-18 Score=125.46 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
++++++||||||+|.||+.++++|.+.+. +.+++.++.++..+.. ..+.+.++|++|++.+++.+ |.+.++.+++
T Consensus 2 ~~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~-~~v~v~~~e~ 77 (189)
T 2qtr_A 2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLELATEAE-EHFSICLEEL 77 (189)
T ss_dssp CEEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCTT---SCCCCHHHHHHHHHHHHTTC-TTEEECCTGG
T ss_pred CeEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCccC---CCCCCHHHHHHHHHHHhCCC-CCEEEehHHh
Confidence 47899999999999999999999999863 7899999987765421 35799999999999999886 6788888888
Q ss_pred cCCCCCcccccccc
Q 033312 100 TDPYGPSIVDENLE 113 (122)
Q Consensus 100 ~d~~Gps~t~~~l~ 113 (122)
+..|++||.++++
T Consensus 78 -~~~~~~~~~~~l~ 90 (189)
T 2qtr_A 78 -SRKGPSYTYDTML 90 (189)
T ss_dssp -GSCSCCCHHHHHH
T ss_pred -cCCCCCCHHHHHH
Confidence 5668999988765
No 10
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.73 E-value=4.5e-18 Score=124.09 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=65.5
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
....+|++||||||+|.||+.++++|++++ |+|+|++++++. | .++.+.++|++|++.+++.. |.+.++.+|
T Consensus 10 ~~~~i~i~~GsFdP~H~GHl~l~~~A~~~~-D~viv~v~~~~~---k---k~~~~~~~R~~ml~~a~~~~-~~v~v~~~e 81 (173)
T 1vlh_A 10 HHHMKAVYPGSFDPITLGHVDIIKRALSIF-DELVVLVTENPR---K---KCMFTLEERKKLIEEVLSDL-DGVKVDVHH 81 (173)
T ss_dssp ---CEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEECCTT---C---CCSSCHHHHHHHHHHHTTTC-TTEEEEEEC
T ss_pred ccceEEEEEEEECcCcHHHHHHHHHHHHHC-CEEEEEEeCCCC---C---CCCCCHHHHHHHHHHHhcCC-CCEEEecCc
Confidence 345689999999999999999999999999 899999999742 2 36799999999999999886 667665444
Q ss_pred ecCCCCCcccccccce
Q 033312 99 ITDPYGPSIVDENLEA 114 (122)
Q Consensus 99 i~d~~Gps~t~~~l~~ 114 (122)
| ||.++++.
T Consensus 82 -----~--~tvd~l~~ 90 (173)
T 1vlh_A 82 -----G--LLVDYLKK 90 (173)
T ss_dssp -----S--CHHHHHHH
T ss_pred -----c--hHHHHHHH
Confidence 3 77777653
No 11
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.72 E-value=5e-18 Score=126.76 Aligned_cols=87 Identities=22% Similarity=0.289 Sum_probs=73.7
Q ss_pred cE-EEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEe
Q 033312 22 GA-VVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (122)
Q Consensus 22 ~~-v~~gGtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei 99 (122)
++ +++||||||+|.||+.++++|.+.+ .|+|+++++.++..+. .++.+.++|++|++.+++.. |.+.++.+|+
T Consensus 3 ~i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e~ 77 (213)
T 1k4m_A 3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRP----QPEANSVQRKHMLELAIADK-PLFTLDEREL 77 (213)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSC----CCSSCHHHHHHHHHHHHTTC-TTEEECCHHH
T ss_pred eEEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHHHHhccC-CCEEEeHHHh
Confidence 37 9999999999999999999999987 3789999998766542 24789999999999999986 7788888888
Q ss_pred cCCCCCcccccccce
Q 033312 100 TDPYGPSIVDENLEA 114 (122)
Q Consensus 100 ~d~~Gps~t~~~l~~ 114 (122)
+..|++||.++++.
T Consensus 78 -~~~~~s~t~~~l~~ 91 (213)
T 1k4m_A 78 -KRNAPSYTAQTLKE 91 (213)
T ss_dssp -HCSSCCCHHHHHHH
T ss_pred -cCCCCCcHHHHHHH
Confidence 67799999877753
No 12
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.71 E-value=3.5e-17 Score=118.45 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=59.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTE 97 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ 97 (122)
|++|++||||||+|.||+.++++|++++ |+|+|++++++ .| .++.+.++|++|++.+++.+ |.+.++.+
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~-D~viv~v~~~~---~K---~~~~~~~eR~~ml~~a~~~~-~~v~v~~~ 70 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSS---AK---NPMFSLDERLKMIQLATKSF-KNVECVAF 70 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEECCG---GG---CCSSCHHHHHHHHHHHHTTS-TTEEEEEE
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC-CceEEEEccCC---CC---CCCCCHHHHHHHHHHHhcCC-CcEEEEec
Confidence 6899999999999999999999999999 79999998874 23 46899999999999999886 66666544
No 13
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.69 E-value=1.1e-17 Score=128.44 Aligned_cols=89 Identities=9% Similarity=0.043 Sum_probs=71.2
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhc-Ce--EEE----EEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCc
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DR--IVV----GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~--viV----gvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~ 92 (122)
.++++++||||||+|.||+.++++|.+.++ +. .+| .++.++. .| ..+.+.++|++|++.+++.. |.+
T Consensus 5 ~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~--~k---~~~~~~~~R~~m~~~ai~~~-~~~ 78 (252)
T 1nup_A 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTY--GK---KDLAASHHRVAMARLALQTS-DWI 78 (252)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTC--SS---SCCCCHHHHHHHHHHHGGGC-SSE
T ss_pred CceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcc--cC---CCCCCHHHHHHHHHHHhcCC-Cce
Confidence 367899999999999999999999999874 32 333 3343332 22 34789999999999999985 889
Q ss_pred EEEEeEecCCCCCcccccccceE
Q 033312 93 VVQTEPITDPYGPSIVDENLEAI 115 (122)
Q Consensus 93 ~v~~~ei~d~~Gps~t~~~l~~l 115 (122)
.++.+|+ .+.|++||++||+.+
T Consensus 79 ~v~~~E~-~~~~~syTidtL~~l 100 (252)
T 1nup_A 79 RVDPWES-EQAQWMETVKVLRHH 100 (252)
T ss_dssp EECCHHH-HSSSCCCHHHHHHHH
T ss_pred EeehHHh-cCCCCCCHHHHHHHH
Confidence 9999999 677999999998754
No 14
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.68 E-value=4.4e-17 Score=118.36 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=56.3
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
+|++|++||||||+|.||+.++++|++++ |+|+|+++.++ .| .++.+.++|++|++.++.. |.+.++.++
T Consensus 4 mm~i~i~~GsFDPiH~GHl~li~~A~~~~-d~viv~v~~~~---~K---~~~~~~~~R~~m~~~~~~~--~~v~V~~~~ 73 (162)
T 4f3r_A 4 MKPIAIYPGTFDPLTNGHVDIIERALPLF-NKIIVACAPTS---RK---DPHLKLEERVNLIADVLTD--ERVEVLPLT 73 (162)
T ss_dssp -CCEEEEEECCTTCCHHHHHHHHHHGGGC-SEEEEEECCC------------CCHHHHHHHHHHHCCC--TTEEEEECC
T ss_pred ceEEEEEEEEcCCCCHHHHHHHHHHHHHC-CcEEEEEecCC---cc---CCCCCHHHHHHHHHHhhCC--CCEEEEecc
Confidence 47899999999999999999999999999 89999999764 23 4789999999999998876 666665543
No 15
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.66 E-value=4.7e-17 Score=127.01 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=72.1
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhc-C---eEEEE---EcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-D---RIVVG---VCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~-d---~viVg---vt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
+..+++++||||||+|.||+.++++|.+.+. + .|+++ ++.++. .| ..+.+.++|++|++.+++.. |.
T Consensus 6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~--~K---~~l~s~~~R~~ml~~ai~~~-~~ 79 (279)
T 1kqn_A 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAY--KK---KGLIPAYHRVIMAELATKNS-KW 79 (279)
T ss_dssp CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGG--CC---TTCCCHHHHHHHHHHHTTTC-SS
T ss_pred CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCc--cc---cCCCCHHHHHHHHHHHhcCC-Cc
Confidence 4467899999999999999999999999863 3 26443 343332 22 35789999999999999886 78
Q ss_pred cEEEEeEecCCCCCcccccccceE
Q 033312 92 LVVQTEPITDPYGPSIVDENLEAI 115 (122)
Q Consensus 92 ~~v~~~ei~d~~Gps~t~~~l~~l 115 (122)
+.++.+|+ ++.|++||++||+.+
T Consensus 80 ~~v~~~E~-~~~~~syTidtL~~l 102 (279)
T 1kqn_A 80 VEVDTWES-LQKEWKETLKVLRHH 102 (279)
T ss_dssp EEECCTGG-GCSSCCCHHHHHHHH
T ss_pred EEEecccc-ccCCCCcHHHHHHHH
Confidence 99999998 678999999998754
No 16
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.66 E-value=1.3e-16 Score=113.14 Aligned_cols=70 Identities=17% Similarity=0.342 Sum_probs=58.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~e 98 (122)
++++++||||||+|.||+.++++|++.+ |+++++++.++ .| .++.+.++|++|++.++..+ |.+.+..++
T Consensus 1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~-d~v~v~~~~~p---~k---~~~~~~~~R~~ml~~a~~~~-~~v~v~~~~ 70 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASP---SK---KPMFTLEERVALAQQATAHL-GNVEVVGFS 70 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEESCC---SS---CCSSCHHHHHHHHHHHTTTC-TTEEEEEEC
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHhcC-CCeEEcccc
Confidence 4789999999999999999999999999 78999999864 23 35789999999999998886 666665444
No 17
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.64 E-value=4e-16 Score=112.27 Aligned_cols=69 Identities=28% Similarity=0.409 Sum_probs=57.4
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEe
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTE 97 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ 97 (122)
++++++||||||+|.||+.++++|++.+ |+++|+++.+ + .| .++.+.++|++|++.++..+ |.+.+..+
T Consensus 2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~-d~v~v~~~~~-p--~k---~~l~~~~~R~~ml~~a~~~~-~~v~v~~~ 70 (169)
T 1o6b_A 2 ASIAVCPGSFDPVTYGHLDIIKRGAHIF-EQVYVCVLNN-S--SK---KPLFSVEERCELLREVTKDI-PNITVETS 70 (169)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCC-C--SS---CCSSCHHHHHHHHHHHHTTC-TTEEEEEC
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHhC-CEEEEEECCC-C--cc---CCCCCHHHHHHHHHHHHhcC-CCEEEccc
Confidence 5789999999999999999999999999 7899988864 2 23 35789999999999999886 55555433
No 18
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.64 E-value=2.2e-16 Score=123.92 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=66.5
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEeE
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI-KPELVVQTEP 98 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~-~p~~~v~~~e 98 (122)
++++|++||||||+|.||+.++++|++++ |+|+|+++++++.+.+ ....++++|++|++.+++.. .|..++.+..
T Consensus 6 ~~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~~~~~v~~~~~~~~~---~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~ 81 (352)
T 2qjt_B 6 MYDISVFIGRFQPFHKGHLHNIIIALQNS-KKVIINIGSCFNTPNI---KNPFSFEQRKQMIESDLQVAGIDLDTVVIEP 81 (352)
T ss_dssp CEEEEEEEECCTTCCHHHHHHHHHHHHSE-EEEEEEEEEESCCCCS---SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred cccEEEEEEecCCCChHHHHHHHHHHHhC-CcEEEEECCCCCCccc---CCCCCHHHHHHHHHHHhccccCccceEEEEE
Confidence 35799999999999999999999999998 6999999987654433 34689999999999999764 2333454455
Q ss_pred ecCC-CCCcccccc
Q 033312 99 ITDP-YGPSIVDEN 111 (122)
Q Consensus 99 i~d~-~Gps~t~~~ 111 (122)
..|. ++..++.+.
T Consensus 82 ~~d~~~~~~~~~~~ 95 (352)
T 2qjt_B 82 LADYFYQEQKWQDE 95 (352)
T ss_dssp EECCTTCHHHHHHH
T ss_pred cCCCcCChHHHHHH
Confidence 5444 455554443
No 19
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.64 E-value=1.1e-15 Score=113.30 Aligned_cols=71 Identities=28% Similarity=0.441 Sum_probs=60.6
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEe
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTE 97 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ 97 (122)
++|++|+++|||||+|.||+.++++|++++ |+|+|+++.++ .| .++.+.++|++|++.+++.+ |.+.+..+
T Consensus 20 ~~mki~v~~GsFDpiH~GHl~li~~A~~~~-d~viv~v~~~p---~K---~~l~s~eeR~~ml~~~~~~v-~~v~v~~f 90 (187)
T 3k9w_A 20 GSMVVAVYPGTFDPLTRGHEDLVRRASSIF-DTLVVGVADSR---AK---KPFFSLEERLKIANEVLGHY-PNVKVMGF 90 (187)
T ss_dssp CCCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECCG---GG---CCSSCHHHHHHHHHHHHTTC-TTEEEEEE
T ss_pred CCcEEEEEEEeCCcCcHHHHHHHHHHHHHC-CcEEEEEecCC---cc---CCCCCHHHHHHHHHHHhccC-CcEEEEec
Confidence 457999999999999999999999999999 79999999763 33 46899999999999999886 66655544
No 20
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.62 E-value=5.6e-16 Score=123.07 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=65.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCc-----cccccCCCCCCHHHHHHHHHHHHHhcCCC-cEE
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-----TNKQFAELIQPVDERMRNVEAYIKSIKPE-LVV 94 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~-----~~k~~~~~~~~~~~R~~~v~~~l~~~~p~-~~v 94 (122)
+++|++||||||+|.||+.++++|++.+ |+|+|++++++.. +.++ .....++++|++|++.++... |. +.+
T Consensus 2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~v~v~~~~~~~~~~~~~~~~~-~~~~~~~~~R~~m~~~~~~~~-~~~~~v 78 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV-DELHVIVCSDTVRDLKLFYDSK-MKRMPTVQDRLRWMQQIFKYQ-KNQIFI 78 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC-SEEEEEEEECHHHHHHHHHHTT-CSSCCCHHHHHHHHHHHTSTT-TTTEEE
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccccccccc-cCCCCCHHHHHHHHHHHhhcC-CCcEEE
Confidence 5789999999999999999999999998 8999999998763 2111 022489999999999999885 66 666
Q ss_pred EEeEecCCCCCcc
Q 033312 95 QTEPITDPYGPSI 107 (122)
Q Consensus 95 ~~~ei~d~~Gps~ 107 (122)
..++ +..+|+|
T Consensus 79 ~~~~--~~~~~~y 89 (365)
T 1lw7_A 79 HHLV--EDGIPSY 89 (365)
T ss_dssp EEEE--CSSSCCT
T ss_pred EEec--cCCCCCC
Confidence 6555 4467774
No 21
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.62 E-value=7.8e-16 Score=109.44 Aligned_cols=79 Identities=22% Similarity=0.410 Sum_probs=60.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEec
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~ 100 (122)
|+ +++||||||+|.||+.++++|++.+ |+++++++.++ . |. ...+.+.++|++|++.++..+ |.+.+..++
T Consensus 1 m~-~v~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~~~~~p-~--k~-~~~~~~~~~R~~ml~~a~~~~-~~v~v~~~e-- 71 (160)
T 1od6_A 1 MH-VVYPGSFDPLTNGHLDVIQRASRLF-EKVTVAVLENP-S--KR-GQYLFSAEERLAIIREATAHL-ANVEAATFS-- 71 (160)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECC---------CCSSCHHHHHHHHHHHTTTC-TTEEEEEEC--
T ss_pred Ce-EEEEeeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC-C--CC-CCCCCCHHHHHHHHHHHhcCC-CCEEEEecC--
Confidence 34 9999999999999999999999999 78999998653 2 22 135789999999999998876 556555443
Q ss_pred CCCCCcccccccc
Q 033312 101 DPYGPSIVDENLE 113 (122)
Q Consensus 101 d~~Gps~t~~~l~ 113 (122)
| ||.++++
T Consensus 72 ---~--~~~~~l~ 79 (160)
T 1od6_A 72 ---G--LLVDFVR 79 (160)
T ss_dssp ---S--CHHHHHH
T ss_pred ---c--hHHHHHH
Confidence 2 6665554
No 22
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.54 E-value=6.4e-15 Score=102.06 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=53.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
|++++++|+|||+|.||+.++++|++.+ ++++|+++.++....+. +.++.+.++|.+|++ .+..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~-~~~~v~v~~~~~~~~~~-~~~l~~~~eR~~~l~-~~~~~ 65 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMG-DYLIVALSTDEFNQIKH-KKSYYDYEQRKMMLE-SIRYV 65 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTS-SEEEEEEECHHHHHHTT-CCCSSCHHHHHHHHH-TBTTC
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhC-CcEEEEEECCHHHhccC-CCCCCCHHHHHHHHH-hcCCC
Confidence 5789999999999999999999999999 68999999986432222 246899999999998 44433
No 23
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.53 E-value=4.2e-15 Score=102.52 Aligned_cols=65 Identities=29% Similarity=0.393 Sum_probs=52.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
|++++++|+|||+|.||+.++++|++.+ ++++|+++.++....+. +.++.+.++|.+|++ .+..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~-d~~~v~v~~~~~~~~~~-~~~l~~~~eR~~~l~-~~~~~ 65 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILE-TIRYV 65 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS-SEEEEEEECHHHHHHHT-CCCSSCHHHHHHHHT-TBTTC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHhcCC-CCCCCCHHHHHHHHH-hcCCC
Confidence 5789999999999999999999999999 78999999976221222 256899999999998 44433
No 24
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.50 E-value=3.8e-14 Score=102.25 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=51.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEE-cCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgv-t~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
++++||||||+|.||+.++++|++.+ |+|+|++ +.+++.+ + ....+.++|++|++.+++..
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~~--~--~~~~~~~~R~~m~~~~~~~~ 63 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV-DEIIIGIGSAQKSHT--L--ENPFTAGERILMITQSLKDY 63 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSS--S--SCCSCHHHHHHHHHHHHTTS
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC-CeEEEEEcCCCCCCC--C--CCCCCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999998 7899987 6655432 2 23569999999999999886
No 25
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=115.08 Aligned_cols=71 Identities=27% Similarity=0.343 Sum_probs=58.9
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d--~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
.|....+++++.|||||+|.||+.+|++|++++ | +|+||+++|+.+. .|+...|+++.++|.++++. +..+
T Consensus 193 ~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~-D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~-~~~v 266 (341)
T 3elb_A 193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLA-ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLA-CRYV 266 (341)
T ss_dssp CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTS-SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHT-BTTC
T ss_pred CCCCCCEEEEEecccCCCCHHHHHHHHHHHHhC-CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHH-cCCC
Confidence 444567899999999999999999999999999 8 9999999997653 34333689999999999984 4443
No 26
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.49 E-value=2e-14 Score=110.17 Aligned_cols=66 Identities=27% Similarity=0.384 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHH
Q 033312 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~a~~~~-~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~ 83 (122)
.|..+++++++.||||++|.||+.+|++|++++ .|+|+||+++|+.+. .|+ .++++.++|+++++.
T Consensus 71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg--~pi~s~eER~e~v~~ 138 (236)
T 3hl4_A 71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKG--FTVMNENERYDAVQH 138 (236)
T ss_dssp CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTC--CCSSCHHHHHHHHHT
T ss_pred CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCC--CCCCCHHHHHHHHHH
Confidence 444667889999999999999999999999996 379999999997653 332 579999999999984
No 27
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.47 E-value=1.2e-13 Score=100.66 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=51.9
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEE-cCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgv-t~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
+++++||||||+|.||+.++++|++.+ |+++|++ +.+++. |+ ..+.+.++|.+|++.++...
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~--~~--~~~~~~~~R~~~~~~a~~~~ 66 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEV-DELIICIGSAQLSH--SI--RDPFTAGERVMMLTKALSEN 66 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCS--SS--SSCSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhC-CeeEEEECCCCCCc--CC--CCCCCHHHHHHHHHHHHhhC
Confidence 589999999999999999999999997 7899988 554433 22 34679999999999999875
No 28
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.46 E-value=4.9e-14 Score=99.58 Aligned_cols=61 Identities=31% Similarity=0.347 Sum_probs=51.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
|++++++|+||++|.||+.++++|++.+ +.++|+++.++....+ ...++.+.++|.++++.
T Consensus 2 m~~v~~~G~FD~vH~GH~~li~~a~~~~-~~~~v~v~~~~~~~~~-~~~~l~~~~eR~~~l~~ 62 (143)
T 3glv_A 2 MIRVMATGVFDILHLGHIHYLKESKKLG-DELVVVVARDSTARNN-GKIPIFDENSRLALISE 62 (143)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTS-SEEEEEECCHHHHHHT-TCCCSSCHHHHHHHHTT
T ss_pred ceEEEEEeecCCCCHHHHHHHHHHHHhC-CCcEEEEECCcchhhc-CCCCCCCHHHHHHHHHh
Confidence 7899999999999999999999999998 6799999987533212 23678999999999876
No 29
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.42 E-value=1.5e-13 Score=106.95 Aligned_cols=65 Identities=22% Similarity=0.260 Sum_probs=52.6
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
+|+++++||||||+|.||+.++++|++.+ |+++|+++++..-.++ ....+.++|++|++.++...
T Consensus 6 ~~~~~i~~G~FdP~H~GH~~li~~a~~~~-d~v~v~v~~~~~p~~~---~~~~~~~~R~~m~~~~~~~~ 70 (341)
T 2qjo_A 6 KYQYGIYIGRFQPFHLGHLRTLNLALEKA-EQVIIILGSHRVAADT---RNPWRSPERMAMIEACLSPQ 70 (341)
T ss_dssp SEEEEEEEECCTTCCHHHHHHHHHHHHHE-EEEEEEEEEETCCCCS---SSCSCHHHHHHHHHTTSCHH
T ss_pred eeeEEEEEEEeCCCCHHHHHHHHHHHHhC-CeEEEEECCcccCCCC---CCCCCHHHHHHHHHHHhhhc
Confidence 36899999999999999999999999999 7888877765432222 23479999999999877654
No 30
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=108.99 Aligned_cols=62 Identities=26% Similarity=0.378 Sum_probs=54.4
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCcc-ccccCCCCCCHHHHHHHHHH
Q 033312 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~-~k~~~~~~~~~~~R~~~v~~ 83 (122)
.+++++++.||||++|.||+.+|++|++++ |+++||+++|+.+. .|+ .++.+.++|.++++.
T Consensus 5 ~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~-d~LiVgV~~d~~v~~~K~--~pi~s~eER~~~l~~ 67 (341)
T 3elb_A 5 RRAVRVWCDGCYDMVHYGHSNQLRQARAMG-DYLIVGVHTDEEIAKHKG--PPVFTQEERYKMVQA 67 (341)
T ss_dssp CCCCEEEEEECCCSCCHHHHHHHHHHHHTS-SEEEEEECCHHHHHHHSS--CCSSCHHHHHHHHHH
T ss_pred CCceEEEEEeeCCCCCHHHHHHHHHHHHhC-CcCEEEeecCHHHhccCC--CCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999 79999999997543 332 489999999999986
No 31
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=98.92 E-value=2.9e-09 Score=86.74 Aligned_cols=82 Identities=22% Similarity=0.173 Sum_probs=62.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc-CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC--cEEEEeE
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEP 98 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~-d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~--~~v~~~e 98 (122)
+.++-||||||+|.||..+++.|++... |.|++.++..+ . | ....+.+.|++|++.+++...|. +.+.+.+
T Consensus 193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~-~--K---~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p 266 (396)
T 1jhd_A 193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK-L--K---KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYG 266 (396)
T ss_dssp SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC-C--C---TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC-C--C---CCCCCHHHHHHHHHHHHHhcCCCcceEEEech
Confidence 4566699999999999999999999874 67888887653 2 2 34589999999999999985354 3344444
Q ss_pred ec-CCCCCcccc
Q 033312 99 IT-DPYGPSIVD 109 (122)
Q Consensus 99 i~-d~~Gps~t~ 109 (122)
+. ...||++|+
T Consensus 267 ~~m~~aGPreai 278 (396)
T 1jhd_A 267 FDMLYAGPREAV 278 (396)
T ss_dssp CCCCCCTHHHHH
T ss_pred HHhhcCCchHHH
Confidence 42 568999886
No 32
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=98.84 E-value=2.4e-09 Score=85.91 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=61.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC--cEEEEeEe
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEPI 99 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~--~~v~~~ei 99 (122)
+.++-.|||||+|.||..++++|.+.+ |.|++.+...+ . | ....+.+.|++|++.+++...|. +.+.+.++
T Consensus 156 ~~VvafqTrNPiHrgH~~l~~~ale~~-d~vll~P~~g~-~--K---~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~ 228 (349)
T 1v47_A 156 RKVVAFQTRNAPHRAHEYLIRLGLELA-DGVLVHPILGA-K--K---PDDFPTEVIVEAYQALIRDFLPQERVAFFGLAT 228 (349)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHHS-SEEEEEEBCSC-C--C---TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCS
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhC-CcEEEEECCCC-C--C---CCCCCHHHHHHHHHHHHhhcCCCcceEEEechH
Confidence 445558999999999999999999986 78998888654 2 2 34589999999999999986465 22333333
Q ss_pred c-CCCCCcccc
Q 033312 100 T-DPYGPSIVD 109 (122)
Q Consensus 100 ~-d~~Gps~t~ 109 (122)
. ...||++|.
T Consensus 229 ~m~~aGPreai 239 (349)
T 1v47_A 229 PMRYAGPKEAV 239 (349)
T ss_dssp CCCCCTHHHHH
T ss_pred HhhcCCcHHHH
Confidence 1 567999885
No 33
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=98.55 E-value=1.3e-07 Score=75.42 Aligned_cols=62 Identities=27% Similarity=0.380 Sum_probs=46.7
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc--CeEEEEEcCCC----CccccccCCCCCCHHHHHHHHHH
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP----MLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~--d~viVgvt~d~----~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
..+++.|+||.+|.||..|+++|.+.++ +...+++|.++ ++........+.+.++|.++++.
T Consensus 16 ~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~ 83 (338)
T 2x0k_A 16 NSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAES 83 (338)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHH
T ss_pred CeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHh
Confidence 4789999999999999999999999873 23466777665 22211112458999999999876
No 34
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=98.50 E-value=2.2e-07 Score=72.63 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=45.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--CccccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~--~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
.+++++ ||||-+|.||+.|+++|++.+ +.++|++..++ +.++........++++|.++++.
T Consensus 22 ~~V~~v-gtfdgLH~GH~sLI~~A~~~a-d~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~ 84 (280)
T 2ejc_A 22 KTIGFV-PTMGYLHEGHLSLVRRARAEN-DVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEK 84 (280)
T ss_dssp CCEEEE-EECSCCCHHHHHHHHHHHHHS-SEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHT
T ss_pred CEEEEE-cCCccccHHHHHHHHHHHHhC-CEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHH
Confidence 456666 899999999999999999999 68999996554 43332111225678999887764
No 35
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=98.47 E-value=7.2e-08 Score=75.60 Aligned_cols=59 Identities=25% Similarity=0.278 Sum_probs=42.5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCC---CccccccCCCCCCHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP---MLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~d--~viVgvt~d~---~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
+++.|+||.+|.||..++++|.+.++. ...+++|.|+ .++.+ ...++.+.++|.++++.
T Consensus 2 vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~-~~~~l~~~~eR~~ll~~ 65 (293)
T 1mrz_A 2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSR 65 (293)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTT
T ss_pred EEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCC-CCCCCCCHHHHHHHHHh
Confidence 577899999999999999999998841 1334455442 23222 23568999999998865
No 36
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.08 E-value=1e-05 Score=65.07 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=44.9
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHHH
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
..+++++-|.||++|.||..++++|++ . +.+++..+ ..+ +... ...+.+.++|.+++.+.
T Consensus 51 ~~~~v~~lG~FDg~H~GHq~lI~~a~~-~-~~~~~Vms-~~~~~vqrg--~~~l~~~~~R~~~~~~~ 112 (357)
T 3gmi_A 51 KDKIVCDFTEYNPLHKGHKYALEKGKE-H-GIFISVLP-GPLERSGRG--IPYFLNRYIRAEMAIRA 112 (357)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHT-S-SEEEEEEC-CTTSBCTTS--SBCSSCHHHHHHHHHHH
T ss_pred CCCEEEEEEecCccCHHHHHHHHHHHH-c-CCeEEEEc-CchHHhcCC--CCcCCCHHHHHHHHHHC
Confidence 357888999999999999999999998 3 44444554 333 3321 24678999999998876
No 37
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=97.99 E-value=1.1e-05 Score=63.69 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=45.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcC--eEEEEEcCCC-C---ccc--cccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP-M---LTN--KQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d--~viVgvt~d~-~---~~~--k~~~~~~~~~~~R~~~v~~~ 84 (122)
...+++-|+||-+|.||..++++|.+.+.. .-.+.+|-++ + +.. ......+.+.++|.++++.+
T Consensus 20 ~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~l 91 (308)
T 3op1_A 20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKRE 91 (308)
T ss_dssp SCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHH
T ss_pred CCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHc
Confidence 356888899999999999999999999742 1244455443 1 111 11235689999999988653
No 38
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=97.03 E-value=0.0022 Score=49.87 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=41.8
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--CccccccCCCCCCHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~--~~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
+.+-|. +|.||..|+++|.+.+ +.++|.+..++ +.++......+.++++|.+.++.
T Consensus 22 VpTmG~---lH~GH~~Li~~A~~~a-~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~ 79 (276)
T 1v8f_A 22 VPTMGY---LHRGHLALVERARREN-PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQE 79 (276)
T ss_dssp EEECSS---CCHHHHHHHHHHHHHC-SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHH
T ss_pred EEeCCC---ccHHHHHHHHHHHHhC-CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHh
Confidence 345555 9999999999999999 78899988875 33332222346889999998865
No 39
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=96.70 E-value=0.007 Score=47.19 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=42.1
Q ss_pred CcEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC--CccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~--~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~--~~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.++|+ +-|. +|.||..|+++|.+.+ +.++|.+-.++ +.++......+.+++++.+.+++.
T Consensus 23 ~~I~fVpTmG~---lH~GH~~LI~~a~~~a-~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~ 86 (283)
T 3ag6_A 23 TTIGFIPTMGA---LHDGHLTMVRESVSTN-DITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV 86 (283)
T ss_dssp CCEEEEEECSS---CCHHHHHHHHHHHTTS-SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH
T ss_pred CcEEEEECCcc---ccHHHHHHHHHHHHhC-CEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC
Confidence 35665 5554 9999999999999998 67888877665 223222122367889999888753
No 40
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=96.35 E-value=0.0042 Score=48.59 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.8
Q ss_pred CcEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 21 ~~~v~--~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
.++|+ +-|. +|.||+.|+++|++.+ |.|+|++--|+
T Consensus 25 ~~IgfVPTMG~---LH~GHlsLv~~Ar~~~-d~vVVSIFVNP 62 (287)
T 3q12_A 25 KRIALVPTMGN---LHEGHMTLVDEAKTRA-DVVVVTIFVNP 62 (287)
T ss_dssp CCEEEEEECSS---CCHHHHHHHHHHHTTS-SEEEEEECCCG
T ss_pred CeEEEEcCCCc---ccHHHHHHHHHHHHhC-CEEEEEeccCc
Confidence 56777 6664 9999999999999999 79999988775
No 41
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=96.34 E-value=0.0045 Score=48.70 Aligned_cols=59 Identities=24% Similarity=0.387 Sum_probs=41.4
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH-HhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHH
Q 033312 24 VVLGGTFDRLHDGHRLFLKASAE-LARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~a~~-~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
+.+-.|+.-+|.||..|+++|++ .+ +.++|.+--++. .++......+.+++++.+.+++
T Consensus 35 vg~VpTmG~LH~GH~sLI~~A~~~~a-~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~ 96 (301)
T 3cov_A 35 VMLVPTMGALHEGHLALVRAAKRVPG-SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRA 96 (301)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHTSTT-EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHH
T ss_pred EEEEecCCcccHHHHHHHHHHHHhcC-CEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHh
Confidence 34446777799999999999999 88 688888876652 2221111125788999888765
No 42
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=96.30 E-value=0.022 Score=45.01 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=42.1
Q ss_pred CcEEE--EcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHHH
Q 033312 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (122)
Q Consensus 21 ~~~v~--~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~~ 84 (122)
.++|+ +-| -+|.||+.|+++|.+.+ |.|+|.+--++. -++.....-.-+++...++++..
T Consensus 43 ~~IgfVPTMG---~LH~GHlsLi~~A~~~~-d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~~ 106 (314)
T 3inn_A 43 KKIGFVPTMG---YLHKGHLELVRRARVEN-DVTLVSIFVNPLQFGANEDLGRYPRDLERDAGLLHDA 106 (314)
T ss_dssp CCEEEEEECS---SCCHHHHHHHHHHHHHC-SEEEEEECCCGGGSCTTSSTTTCCCCHHHHHHHHHHT
T ss_pred CeEEEEcCCC---ccCHHHHHHHHHHHHhC-CEEEEEECCChhhcCCCccccccCCCHHHHHHHHHhC
Confidence 45776 555 49999999999999998 799999877752 23222222346778888877653
No 43
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=96.02 E-value=0.013 Score=45.69 Aligned_cols=61 Identities=16% Similarity=0.354 Sum_probs=44.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCc--cccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~--~~k~~~~~~~~~~~R~~~v~~ 83 (122)
.++| +-.|..-+|.||+.|+++|.+.+ +.++|.+--++.- ++........+++++.+++++
T Consensus 22 ~~ig-~VPTMG~LH~GH~sLi~~A~~~~-d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~ 84 (283)
T 3uk2_A 22 NRTA-FVPTMGNLHEGHLSLMRLARQHG-DPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQK 84 (283)
T ss_dssp SSCE-EEEECSSCCHHHHHHHHHHHTTC-SSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHT
T ss_pred CeEE-EECCCCcccHHHHHHHHHHHHhC-CEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHH
Confidence 3444 45799999999999999999998 6888888776532 222222345788888887764
No 44
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.91 E-value=0.044 Score=45.68 Aligned_cols=63 Identities=24% Similarity=0.215 Sum_probs=44.2
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
+.++-..|+||+|.||..++.+++....+.|+|-+.-... | ..-.+.+.|++..+.+++.. |.
T Consensus 189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g~~---k---~~di~~~~r~~~~~~~~~~y-p~ 251 (511)
T 1g8f_A 189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGLT---K---PGDIDHHTRVRVYQEIIKRY-PN 251 (511)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSBC---S---TTCCCHHHHHHHHHHHGGGS-CT
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCCCC---C---CCCCCHHHHHHHHHHHHHhC-Cc
Confidence 4455578999999999666555554433667776654421 2 23489999999999999987 54
No 45
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=95.91 E-value=0.034 Score=45.15 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=42.1
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhc
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~ 88 (122)
+.++-..|+||+|.||..++.+++....+.|+|-+.-.. .| ..-.+.+.|++..+.+++..
T Consensus 188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lllhPlvG~---tK---~~Dip~~vR~~~~~~~l~~y 248 (395)
T 1r6x_A 188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGL---TK---PGDIDHHTRVRVYQEIIKRY 248 (395)
T ss_dssp CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCSB---CC---TTCCCHHHHHHHHHHHGGGS
T ss_pred CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEEEECCCC---CC---CCCCCHHHHHHHHHHHHHhC
Confidence 455667899999999966655555543255555444331 12 33589999999999999987
No 46
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.67 E-value=0.045 Score=45.73 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=46.1
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHH-hcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAEL-ARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~-~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
+.++--=|++|+|.||..|+++|+.. + +.|+|-+.... .+ ..-.+.+.|++..+.+++...|.
T Consensus 164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~-~~llv~p~~g~----~k--~~di~~~~R~~~~~~~~~~~~p~ 227 (546)
T 2gks_A 164 DKIVAFQTRNPMHRVHEELTKRAMEKVG-GGLLLHPVVGL----TK--PGDVDVYTRMRIYKVLYEKYYDK 227 (546)
T ss_dssp SCEEEECCSSCCCHHHHHHHHHHHHHHT-SEEEECCBCSB----CC--TTSCCHHHHHHHHHHHHHHHSCT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcC-CcEEEEeCcCC----CC--CCCCCHHHHHHHHHHHHHhcCCC
Confidence 34554679999999999999999974 5 56666444322 11 23579999999999999886454
No 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.26 E-value=0.032 Score=46.93 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=44.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
.++--=|+||+|.||..++++|+....+.|+|-+.... .+ ..-.+.+.|++..+.+++.. |.
T Consensus 192 ~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~g~----~k--~~di~~~~R~~~~~~~~~~~-p~ 253 (573)
T 1m8p_A 192 RVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVGL----TK--PGDIDHFTRVRAYQALLPRY-PN 253 (573)
T ss_dssp SEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCCC----CC--TTCHHHHHHHHHHHHHGGGS-ST
T ss_pred eEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCCCC----CC--CCCCCHHHHHHHHHHHHHhC-CC
Confidence 34445689999999999999999773256666433322 11 23478999999999998876 54
No 48
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=94.47 E-value=0.079 Score=41.32 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=37.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCC--ccccccCCCCCCHHHHHHHHHH
Q 033312 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEA 83 (122)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~--~~~k~~~~~~~~~~~R~~~v~~ 83 (122)
.++|++. |---+|.||+.|+++|++ + |.|+|.+--|+. -++.....-.-+++.-.+.++.
T Consensus 25 ~~Ig~VP-TMGaLH~GHlsLv~~Ar~-~-d~VVVSIFVNP~QF~~~EDl~~YPRtle~D~~ll~~ 86 (285)
T 3mxt_A 25 LSIGYVP-TMGFLHDGHLSLVKHAKT-Q-DKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQD 86 (285)
T ss_dssp CCEEEEE-ECSSCCHHHHHHHHHHTT-S-SEEEEEECCCGGGCCTTSCTTTSCCCHHHHHHHHHH
T ss_pred CeEEEEc-CCCcccHHHHHHHHHHHh-C-CEEEEEeccCccccCCchhhhcCCCCHHHHHHHHHH
Confidence 4566532 333599999999999999 7 799999877653 1221111112455666665554
No 49
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=93.72 E-value=0.11 Score=40.07 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=31.3
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCC
Q 033312 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (122)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~ 60 (122)
..++|++ -|---+|.||+.|+++|++.+ |.++|.+--++
T Consensus 23 g~~ig~V-PTMGaLH~GHlsLv~~Ar~~~-d~vVVSIFVNP 61 (264)
T 3n8h_A 23 QQKIGFV-PTMGALHNGHISLIKKAKSEN-DVVIVSIFVNP 61 (264)
T ss_dssp TSCEEEE-EECSSCCHHHHHHHHHHHHHC-SEEEEEECCCG
T ss_pred CCcEEEE-CCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 3455554 455689999999999999999 79999888775
No 50
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.96 E-value=1.2 Score=37.20 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=48.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC--cEEEEeEe
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTEPI 99 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~--~~v~~~ei 99 (122)
+++.| =|-||+|.||..++++|+....+-|+|-+ ++...+ ..-.+.+.|++..+.+++.. |. +.+.++++
T Consensus 165 ~v~af-qtrnp~Hrah~~~~~~~~~~~~~~lll~p----l~g~~k--~~d~~~~~r~~~~~~~~~~~-p~~~~~l~~~p~ 236 (552)
T 3cr8_A 165 RIIAW-QARQPMHRAQYEFCLKSAIENEANLLLHP----QVGGDI--TEAPAYFGLVRSFLAIRDRF-PAATTQLSLLPA 236 (552)
T ss_dssp SEEEE-CCSSCCCHHHHHHHHHHHHHTTCEEEECC----BCCCCT--TTCTTHHHHHHHHHHHGGGS-CGGGEEECBBCS
T ss_pred ceEEE-ecCCCCchHHHHHHHHHHHhcCCeEEEEe----ccCCCC--CCCCCHHHHHHHHHHHHHhC-CCccEEEeecch
Confidence 44555 89999999999999999954335555533 332222 34689999999999999987 54 23335554
No 51
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.76 E-value=4 Score=34.78 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=44.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHH-hc-----CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHh-cCCC
Q 033312 22 GAVVLGGTFDRLHDGHRLFLKASAEL-AR-----DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS-IKPE 91 (122)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~a~~~-~~-----d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~-~~p~ 91 (122)
+.++--=|.||+|.||-.|.+.|.+. ++ +-|+|-+.-... | ..-.+.+.|++..+.+++. ..|.
T Consensus 413 ~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G~t---k---~~di~~~~r~~~~~~~~~~~y~p~ 483 (630)
T 1x6v_B 413 DAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGGWT---K---DDDVPLMWRMKQHAAVLEEGVLNP 483 (630)
T ss_dssp SEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCSCC---C---TTSCCHHHHHHHHHHHHHTTSSCG
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcCCC---C---CCCCCHHHHHHHHHHHHHcCCCCC
Confidence 34444469999999999999999874 42 136555544321 1 3458999999999999995 4443
No 52
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=55.83 E-value=7.6 Score=25.95 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred CeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCCcEEEEeEecCCCCCcccccccceEEEccc
Q 033312 50 DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVRYV 120 (122)
Q Consensus 50 d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~~~v~~~ei~d~~Gps~t~~~l~~lvvs~e 120 (122)
+.+|-|+|++. |. --...|.+|+..+ +..+.|+..+.+.+. .-| .+++-++|+||+++
T Consensus 12 e~iI~GiT~~G----k~--FRPSDWAERL~Gv---ma~F~~~~rl~YSp~---~~P-~~i~GvkcVvVd~~ 69 (108)
T 2l9d_A 12 EIIIQGLTRAG----KP--FRPSDWVDRMCST---YASFGADRKLRYSPY---LKP-RVIEGVRCLAVDLK 69 (108)
T ss_dssp EEEEEEEETTS----CB--CSCTTHHHHHHHT---TCEECSSSSEECCTT---EEE-CCBTTBCCEEEETH
T ss_pred eEEEEeecCCC----CC--cCCchHHHHHhhH---HHhcCCCCcceeCCc---ccc-eeeCCeeEEEECcH
Confidence 46788999863 22 2247899999865 455556544432222 224 45788999999876
No 53
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=51.25 E-value=42 Score=25.14 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=41.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCeEEEEEcCCCCccccccCCCCCCHHHHHHHHHHHHHhcCCC
Q 033312 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (122)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~a~~~~~d~viVgvt~d~~~~~k~~~~~~~~~~~R~~~v~~~l~~~~p~ 91 (122)
.+++-|| -|.|=++++++|.+.+.+++.-.+..=.+. .+.++|++.+.++++.++|.
T Consensus 174 lvvitGC---sH~GI~Niv~~a~~~~g~~i~~viGGfHL~---------~~~~~~l~~tl~~l~~~~~~ 230 (267)
T 3h3e_A 174 LVVITGC---SHRGIDNILLDIAETFNERIKMVVGGFHLL---------KSSDDEIEKIVKAFNELGVE 230 (267)
T ss_dssp EEEEESC---CTTCHHHHHHHHHTTCSSCEEEEEEECCCT---------TSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCC---CCcCHHHHHHHHHHHhCCCceEEEeccccC---------CCCHHHHHHHHHHHHhcCCC
Confidence 4566665 699999999999998656666555543332 22368998888999988775
No 54
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=40.43 E-value=15 Score=29.97 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.2
Q ss_pred cEEEEcccC---CCCCHHHHH
Q 033312 22 GAVVLGGTF---DRLHDGHRL 39 (122)
Q Consensus 22 ~~v~~gGtF---DplH~GH~~ 39 (122)
+..+++.+. +++|.||..
T Consensus 26 ~~~i~~p~pypng~lHiGH~r 46 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAY 46 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhH
Confidence 456777765 799999985
No 55
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=30.82 E-value=34 Score=26.71 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=17.3
Q ss_pred cCCCCCHHHHH-HHHHHHHHhc-CeEEEEEcCC
Q 033312 29 TFDRLHDGHRL-FLKASAELAR-DRIVVGVCDG 59 (122)
Q Consensus 29 tFDplH~GH~~-ll~~a~~~~~-d~viVgvt~d 59 (122)
|-+ +|.||+. .+.....+-+ -.+++-+.+.
T Consensus 32 TG~-lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ 63 (351)
T 1yi8_B 32 TGA-LHLGHLAGSLQNRVRLQDEAELFVLLADV 63 (351)
T ss_dssp SSC-CBHHHHHHTHHHHHHHTSSSEEEEEECHH
T ss_pred CCC-ccHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 433 9999987 5544433321 2566666553
No 56
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=25.28 E-value=63 Score=24.67 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHHhc--CeEEEEEcCCC
Q 033312 32 RLHDGHRLFLKASAELAR--DRIVVGVCDGP 60 (122)
Q Consensus 32 plH~GH~~ll~~a~~~~~--d~viVgvt~d~ 60 (122)
.+|.||+--+.....+-+ -.+++-+.+..
T Consensus 40 ~lHlGhl~~l~~~~~lQ~~g~~~~~~i~D~~ 70 (314)
T 2zp1_A 40 KIHLGHYLQIKKMIDLQNAGFDIIILLADLA 70 (314)
T ss_dssp SCBHHHHHHHHHHHHHHHTTEEEEEEECHHH
T ss_pred CcchhhHHHHHHHHHHHHCCCCEEEEEecce
Confidence 499999776666665531 35677776543
No 57
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=24.63 E-value=39 Score=27.02 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=13.7
Q ss_pred cEEEEcccC---CCCCHHHHH
Q 033312 22 GAVVLGGTF---DRLHDGHRL 39 (122)
Q Consensus 22 ~~v~~gGtF---DplH~GH~~ 39 (122)
+..+++.+. +++|.||..
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r 24 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAY 24 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHH
Confidence 345666665 899999996
No 58
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=24.46 E-value=52 Score=25.78 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHhc--CeEEEEEcCC
Q 033312 32 RLHDGHRLFLKASAELAR--DRIVVGVCDG 59 (122)
Q Consensus 32 plH~GH~~ll~~a~~~~~--d~viVgvt~d 59 (122)
.+|.||+--+.....+-+ -.+++-+.+.
T Consensus 47 ~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD~ 76 (364)
T 2cya_A 47 VAHIGWLVWMYKVKDLVEAGVDFSVLEATW 76 (364)
T ss_dssp SCBTHHHHHHHHHHHHHHTTCEEEEEECHH
T ss_pred CccHhHHHHHHHHHHHHHCCCCEEEEEeCc
Confidence 499999777766665521 3677777653
No 59
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=23.78 E-value=69 Score=25.31 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=19.0
Q ss_pred CCC---CCHHHHHHHHHHHHHh--cCeEEEEEcC
Q 033312 30 FDR---LHDGHRLFLKASAELA--RDRIVVGVCD 58 (122)
Q Consensus 30 FDp---lH~GH~~ll~~a~~~~--~d~viVgvt~ 58 (122)
||| +|.||+.-+...+.+. .-.+++-+.+
T Consensus 46 ~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D 79 (394)
T 2dlc_X 46 TAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLAD 79 (394)
T ss_dssp ECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred eCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 555 9999988665444432 2467777776
No 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=23.47 E-value=38 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=13.8
Q ss_pred CCcEEEEcccC---CCCCHHHHH
Q 033312 20 SYGAVVLGGTF---DRLHDGHRL 39 (122)
Q Consensus 20 ~~~~v~~gGtF---DplH~GH~~ 39 (122)
+.++.+++.+. +++|.||..
T Consensus 25 ~~~~~i~~~~py~ng~lHiGH~r 47 (564)
T 3kfl_A 25 QKVFFATTPIYYVNASPHIGHVY 47 (564)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHH
T ss_pred CCCEEEeCCCCCCCCCCCcchhH
Confidence 34555666553 699999996
No 61
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=21.38 E-value=56 Score=25.80 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=13.0
Q ss_pred EEEEcccC--CCCCHHHHH
Q 033312 23 AVVLGGTF--DRLHDGHRL 39 (122)
Q Consensus 23 ~v~~gGtF--DplH~GH~~ 39 (122)
..+++|-+ +++|.||..
T Consensus 41 ~~y~~gPt~yg~~HiGHar 59 (414)
T 3c8z_A 41 TMYVCGITPYDATHLGHAA 59 (414)
T ss_dssp EEEECCCCTTSCCBHHHHH
T ss_pred eEEeCCCcCCCCcCccccH
Confidence 45566644 999999997
No 62
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=21.25 E-value=46 Score=27.25 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=15.1
Q ss_pred CCcEEEEcccC---CCCCHHHHHH
Q 033312 20 SYGAVVLGGTF---DRLHDGHRLF 40 (122)
Q Consensus 20 ~~~~v~~gGtF---DplH~GH~~l 40 (122)
+.+..+++++. +++|.||..-
T Consensus 17 ~~~~~v~~~~py~ng~lHiGH~r~ 40 (560)
T 3h99_A 17 AKKILVTCASPYANGSIHLGHMLE 40 (560)
T ss_dssp CCEEEEEECCCBTTSCCBHHHHHH
T ss_pred CCcEEEeCCCCCCCCCcchhhHHH
Confidence 44556777744 6899999873
No 63
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=20.31 E-value=2.1e+02 Score=23.20 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=21.8
Q ss_pred EEEEcc---cCCCCCHHHHHHHHHHHH---HhcCeEEEEEcCC
Q 033312 23 AVVLGG---TFDRLHDGHRLFLKASAE---LARDRIVVGVCDG 59 (122)
Q Consensus 23 ~v~~gG---tFDplH~GH~~ll~~a~~---~~~d~viVgvt~d 59 (122)
..++.| |-+.+|.||+.-+..... .+.-.++|.+++.
T Consensus 92 ~~vytG~dPTagsLHLGH~v~~~~l~~lQ~~~g~~v~I~IgD~ 134 (451)
T 3foc_A 92 IYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDD 134 (451)
T ss_dssp EEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred eEEEecCCCCCCCccHHHHHHHHHHHHHHHccCceEEEEeeCc
Confidence 344445 447899999875542222 2334677777654
Done!