BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033313
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling Protein
           Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 29.3 bits (64), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 54  LNACKPIVYGQ-PPSPA--CCQRIRVQHFECICP-SITPKLASL-VDINKAILLLKTCG 107
           LN CKP V  + P SP+  CC  ++   F C+C    +P L S  VD   A  L K CG
Sbjct: 12  LNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCG 70


>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
 pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
           Muscle
          Length = 762

 Score = 28.1 bits (61), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 51  RLGLNACKPIVYGQPPSPACC------QRIRVQHFECICPSITPKLASLVDINKAILLLK 104
           R+G+ A   ++ G P +PAC       Q +R+   EC+   +T  +   +D  +    +K
Sbjct: 315 RMGVEAVMALLEGTPDTPACVVSLSGNQAVRLPLMECV--QVTKDVTKAMDEKRFDEAMK 372

Query: 105 TCGR 108
             GR
Sbjct: 373 LRGR 376


>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
           From Escherichia Coli
 pdb|4A2C|B Chain B, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase
           From Escherichia Coli
          Length = 346

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 82  ICPSITPKLASLVDINKAILLLKTCGRRVPRHFKCGSLHFP 122
           +  S+ P++    ++   I     CG  +PR FK G+ ++P
Sbjct: 14  VAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAHYYP 54


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.138    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,387,933
Number of Sequences: 62578
Number of extensions: 113398
Number of successful extensions: 245
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 3
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)