Query 033313
Match_columns 122
No_of_seqs 135 out of 889
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.7 2.4E-17 5.3E-22 107.1 4.1 69 46-116 1-73 (73)
2 cd01959 nsLTP2 nsLTP2: Non-spe 99.6 6.2E-16 1.3E-20 99.3 3.8 58 53-111 5-64 (66)
3 cd01960 nsLTP1 nsLTP1: Non-spe 99.5 3E-14 6.4E-19 95.3 3.0 72 45-117 2-89 (89)
4 PF14368 LTP_2: Probable lipid 99.4 1E-14 2.2E-19 97.5 -0.1 69 43-116 19-96 (96)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.1 2E-11 4.3E-16 76.4 2.3 55 54-108 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.0 3.3E-10 7.2E-15 71.8 4.2 69 46-116 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.7 2.1E-10 4.5E-15 76.1 -5.6 63 53-116 14-90 (90)
8 PF14547 Hydrophob_seed: Hydro 96.7 0.00072 1.6E-08 45.4 1.2 65 53-117 8-85 (85)
9 cd01958 HPS_like HPS_like: Hyd 96.4 0.0031 6.7E-08 42.4 2.9 70 46-116 4-85 (85)
10 PF12273 RCR: Chitin synthesis 91.3 0.12 2.6E-06 36.6 1.5 24 10-33 1-24 (130)
11 cd00261 AAI_SS AAI_SS: Alpha-A 67.5 2.3 5.1E-05 28.7 0.6 43 68-110 45-104 (110)
12 PHA02975 hypothetical protein; 64.0 12 0.00026 24.2 3.3 22 4-25 37-58 (69)
13 PHA02819 hypothetical protein; 63.6 10 0.00023 24.6 3.0 15 6-20 38-52 (71)
14 PHA02844 putative transmembran 63.2 10 0.00023 24.8 3.0 15 7-21 44-58 (75)
15 PF03100 CcmE: CcmE; InterPro 61.4 2.7 5.8E-05 29.8 0.0 24 4-27 1-24 (131)
16 PHA02650 hypothetical protein; 60.3 12 0.00026 24.8 2.9 14 8-21 46-59 (81)
17 PHA02844 putative transmembran 57.8 15 0.00033 24.0 3.1 25 4-28 38-62 (75)
18 PHA03054 IMV membrane protein; 53.6 23 0.00051 23.0 3.4 15 7-21 44-58 (72)
19 PHA02819 hypothetical protein; 50.7 24 0.00052 22.9 3.1 23 5-27 40-62 (71)
20 PHA02650 hypothetical protein; 42.7 37 0.0008 22.6 3.1 21 7-27 42-62 (81)
21 PF11368 DUF3169: Protein of u 42.0 27 0.00059 27.0 2.8 26 4-29 1-26 (248)
22 PF05617 Prolamin_like: Prolam 40.6 16 0.00034 22.6 1.1 21 64-84 26-46 (70)
23 PF09889 DUF2116: Uncharacteri 38.9 27 0.00059 21.7 1.9 19 8-26 37-55 (59)
24 PF12853 NADH_u_ox_C: C-termin 37.6 17 0.00036 24.6 0.9 21 4-24 27-47 (90)
25 PF13253 DUF4044: Protein of u 36.7 69 0.0015 17.9 3.2 16 5-20 3-18 (35)
26 PF12911 OppC_N: N-terminal TM 35.8 49 0.0011 19.3 2.7 21 9-29 15-35 (56)
27 PRK13254 cytochrome c-type bio 30.7 63 0.0014 23.6 3.1 15 4-18 2-16 (148)
28 PHA02692 hypothetical protein; 28.4 67 0.0015 20.8 2.5 10 8-17 42-51 (70)
29 COG1580 FliL Flagellar basal b 28.1 70 0.0015 23.6 2.9 24 3-26 11-34 (159)
30 COG3117 Uncharacterized protei 28.0 70 0.0015 24.5 3.0 24 6-29 1-24 (188)
31 PF11466 Doppel: Prion-like pr 28.0 62 0.0013 17.5 1.9 17 4-20 1-17 (30)
32 PRK09510 tolA cell envelope in 27.5 75 0.0016 26.9 3.4 24 1-24 1-26 (387)
33 PF07172 GRP: Glycine rich pro 26.9 56 0.0012 22.1 2.1 8 17-24 11-18 (95)
34 PRK10299 PhoPQ regulatory prot 26.3 64 0.0014 19.3 2.0 17 8-24 3-19 (47)
35 PF12575 DUF3753: Protein of u 24.3 98 0.0021 20.1 2.8 9 13-21 50-58 (72)
36 PF04995 CcmD: Heme exporter p 23.8 1.2E+02 0.0025 17.5 2.8 18 10-27 7-24 (46)
37 PF13800 Sigma_reg_N: Sigma fa 21.8 67 0.0015 21.1 1.7 19 8-26 11-29 (96)
38 TIGR03141 cytochro_ccmD heme e 21.8 1.4E+02 0.0029 17.2 2.8 18 10-27 8-25 (45)
39 PRK10617 cytochrome c-type pro 21.0 67 0.0015 24.6 1.8 11 7-17 20-30 (200)
40 PF13721 SecD-TM1: SecD export 20.4 1E+02 0.0022 20.8 2.4 18 10-27 3-20 (101)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.68 E-value=2.4e-17 Score=107.09 Aligned_cols=69 Identities=35% Similarity=0.767 Sum_probs=59.0
Q ss_pred CchhhhccccCCcccccC-C---CCCHhHHHHHHhcCccccccCCCCCCcCCCCHHHHHHHHhhcCCCCCCCCCC
Q 033313 46 CNEERRLGLNACKPIVYG-Q---PPSPACCQRIRVQHFECICPSITPKLASLVDINKAILLLKTCGRRVPRHFKC 116 (122)
Q Consensus 46 C~~~~~~~L~pC~~yv~g-~---~Ps~~CC~~vk~~d~~ClC~~~~~~~~~~in~~~a~~Lp~~Cgv~~p~~~~C 116 (122)
|+.++ ..|.||++|++| . +||++||++||++|+.|+|.+++.....+||+++|.+||++||+++|+ ++|
T Consensus 1 C~~~~-~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 1 CNMDL-DLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CCCCH-HHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcccccCHHHHHHHHHHcCCCCCC-CCC
Confidence 55664 579999999875 3 489999999999999999999965444469999999999999999999 887
No 2
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.60 E-value=6.2e-16 Score=99.28 Aligned_cols=58 Identities=36% Similarity=0.849 Sum_probs=53.6
Q ss_pred cccCCccccc-CCCCCHhHHHHHHhcCccccccCC-CCCCcCCCCHHHHHHHHhhcCCCCC
Q 033313 53 GLNACKPIVY-GQPPSPACCQRIRVQHFECICPSI-TPKLASLVDINKAILLLKTCGRRVP 111 (122)
Q Consensus 53 ~L~pC~~yv~-g~~Ps~~CC~~vk~~d~~ClC~~~-~~~~~~~in~~~a~~Lp~~Cgv~~p 111 (122)
.|.+|++|+. |.+||++||+.+|+++ .|||+|+ ++.+..+||.++|++|+++||+++|
T Consensus 5 ~L~~C~~ai~~~~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 5 QLSPCLPAILGGSPPSAACCAKLKEQQ-SCLCQYAKNPSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hcccCHHHHhCCCCCCHHHHHHHhcCC-CCeeeeecCccHHhhcCcHHHHHHHHHcCCCCC
Confidence 7999999976 6799999999999988 9999999 6788888999999999999999997
No 3
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.46 E-value=3e-14 Score=95.34 Aligned_cols=72 Identities=25% Similarity=0.536 Sum_probs=56.8
Q ss_pred CCchhhhccccCCcccccC--CCCCHhHHHHHHhc--------CccccccCCCCCCcC--CCCHHHHHHHHhhcCCCCC-
Q 033313 45 QCNEERRLGLNACKPIVYG--QPPSPACCQRIRVQ--------HFECICPSITPKLAS--LVDINKAILLLKTCGRRVP- 111 (122)
Q Consensus 45 ~C~~~~~~~L~pC~~yv~g--~~Ps~~CC~~vk~~--------d~~ClC~~~~~~~~~--~in~~~a~~Lp~~Cgv~~p- 111 (122)
+|..+ ...|.||++|++| ..|+++||++++++ |+.|+|..+...... .||.++|.+||++||+++|
T Consensus 2 ~C~~v-~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 2 SCGQV-TSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CHHHH-HhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 58887 4689999999986 37999999999994 456777776322222 2899999999999999865
Q ss_pred ---CCCCCC
Q 033313 112 ---RHFKCG 117 (122)
Q Consensus 112 ---~~~~C~ 117 (122)
+++||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 778884
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.45 E-value=1e-14 Score=97.47 Aligned_cols=69 Identities=29% Similarity=0.639 Sum_probs=46.4
Q ss_pred CCCCchhhhccccCC---cccccC-CCCCHhHHHHHHhc---CccccccCCCCCC-cC-CCCHHHHHHHHhhcCCCCCCC
Q 033313 43 PSQCNEERRLGLNAC---KPIVYG-QPPSPACCQRIRVQ---HFECICPSITPKL-AS-LVDINKAILLLKTCGRRVPRH 113 (122)
Q Consensus 43 ~~~C~~~~~~~L~pC---~~yv~g-~~Ps~~CC~~vk~~---d~~ClC~~~~~~~-~~-~in~~~a~~Lp~~Cgv~~p~~ 113 (122)
..+|.+ .|.+| ..|+.+ .+||++||+++|++ |+.|||++++... .. .||++++.+||++||+++|+
T Consensus 19 ~~~c~~----~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~~~- 93 (96)
T PF14368_consen 19 CCSCAN----SLLPCCPCLCYVTGGPAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPVPP- 93 (96)
T ss_dssp TTB-HC----CCCHH--HHHHHCC-----HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-S--
T ss_pred cchhHH----HHhccccchhccCCCCCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCCCC-
Confidence 456644 46676 677764 68999999999995 7899999996433 33 49999999999999999998
Q ss_pred CCC
Q 033313 114 FKC 116 (122)
Q Consensus 114 ~~C 116 (122)
++|
T Consensus 94 ~~C 96 (96)
T PF14368_consen 94 SKC 96 (96)
T ss_dssp ---
T ss_pred CCC
Confidence 877
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.14 E-value=2e-11 Score=76.37 Aligned_cols=55 Identities=24% Similarity=0.664 Sum_probs=45.0
Q ss_pred ccCCcccccC--CCCCHhHHHHHHhc---CccccccCCC-CCCcC-CC-CHHHHHHHHhhcCC
Q 033313 54 LNACKPIVYG--QPPSPACCQRIRVQ---HFECICPSIT-PKLAS-LV-DINKAILLLKTCGR 108 (122)
Q Consensus 54 L~pC~~yv~g--~~Ps~~CC~~vk~~---d~~ClC~~~~-~~~~~-~i-n~~~a~~Lp~~Cgv 108 (122)
|.||++|++| ..||.+||++++++ |+.|+|+++. +.... .+ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 5799999986 47999999999996 5799999994 32222 24 79999999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.02 E-value=3.3e-10 Score=71.77 Aligned_cols=69 Identities=29% Similarity=0.668 Sum_probs=53.6
Q ss_pred CchhhhccccCCcccccC----CCCCHhHHHHHHhc-CccccccCCCCCCcCC-----CCHHHHHHHHhhcCCCCCCCCC
Q 033313 46 CNEERRLGLNACKPIVYG----QPPSPACCQRIRVQ-HFECICPSITPKLASL-----VDINKAILLLKTCGRRVPRHFK 115 (122)
Q Consensus 46 C~~~~~~~L~pC~~yv~g----~~Ps~~CC~~vk~~-d~~ClC~~~~~~~~~~-----in~~~a~~Lp~~Cgv~~p~~~~ 115 (122)
|... ...+.+|.+|+.+ ..|+++||++++.+ +..|+|..+....... ++..++.+||+.||+..+. ++
T Consensus 1 C~~~-~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~-~~ 78 (79)
T smart00499 1 CGQV-LLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPY-TD 78 (79)
T ss_pred Chhh-hhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCC-CC
Confidence 4444 2356699999864 36889999999999 9999999995333222 4899999999999999875 45
Q ss_pred C
Q 033313 116 C 116 (122)
Q Consensus 116 C 116 (122)
|
T Consensus 79 C 79 (79)
T smart00499 79 C 79 (79)
T ss_pred C
Confidence 4
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.69 E-value=2.1e-10 Score=76.11 Aligned_cols=63 Identities=30% Similarity=0.620 Sum_probs=52.0
Q ss_pred cccCCcccccC--CCCCHhHHHHHHhcCccccccCCCCCCcC------------CCCHHHHHHHHhhcCCCCCCCCCC
Q 033313 53 GLNACKPIVYG--QPPSPACCQRIRVQHFECICPSITPKLAS------------LVDINKAILLLKTCGRRVPRHFKC 116 (122)
Q Consensus 53 ~L~pC~~yv~g--~~Ps~~CC~~vk~~d~~ClC~~~~~~~~~------------~in~~~a~~Lp~~Cgv~~p~~~~C 116 (122)
.+.+|.+|+++ ..|+.+||++|++++..|.|..+...... .++..+|..||+.||+++|. ++|
T Consensus 14 ~l~~c~~~~~~~~~~~~~~CC~~L~~l~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~-~~C 90 (90)
T PF00234_consen 14 RLSPCLPYLQGGCQQPSQQCCQQLRQLDPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPY-TDC 90 (90)
T ss_dssp HHHGGHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSS-S-G
T ss_pred cccccHHHHhcccccchHHHhHHHHHHhHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCC-CCC
Confidence 58999999986 36899999999999999999999422222 38899999999999999876 666
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=96.70 E-value=0.00072 Score=45.39 Aligned_cols=65 Identities=35% Similarity=0.802 Sum_probs=45.9
Q ss_pred cccCCcccc------cCCCCCHhHHHHHHhc-C---ccccccCCCCCCcCC--CCH-HHHHHHHhhcCCCCCCCCCCC
Q 033313 53 GLNACKPIV------YGQPPSPACCQRIRVQ-H---FECICPSITPKLASL--VDI-NKAILLLKTCGRRVPRHFKCG 117 (122)
Q Consensus 53 ~L~pC~~yv------~g~~Ps~~CC~~vk~~-d---~~ClC~~~~~~~~~~--in~-~~a~~Lp~~Cgv~~p~~~~C~ 117 (122)
.|.-|...+ .|.++.++||.-++.. | ..|+|..+..+.... +|. -....+...||...|++|+|.
T Consensus 8 kLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~gf~C~ 85 (85)
T PF14547_consen 8 KLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPSGFTCP 85 (85)
T ss_pred hhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcCCCcCC
Confidence 566676655 2457889999999995 2 399999885433221 222 245677888999999999994
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=96.43 E-value=0.0031 Score=42.36 Aligned_cols=70 Identities=33% Similarity=0.771 Sum_probs=46.7
Q ss_pred CchhhhccccCCccccc------CCCCCHhHHHHHHhc---C-ccccccCCCCCCcC-CCCHH-HHHHHHhhcCCCCCCC
Q 033313 46 CNEERRLGLNACKPIVY------GQPPSPACCQRIRVQ---H-FECICPSITPKLAS-LVDIN-KAILLLKTCGRRVPRH 113 (122)
Q Consensus 46 C~~~~~~~L~pC~~yv~------g~~Ps~~CC~~vk~~---d-~~ClC~~~~~~~~~-~in~~-~a~~Lp~~Cgv~~p~~ 113 (122)
|..+ ...+.-|..-+. |.+|.++||..++.. | ..|+|..+..+... .+|.+ +..-+-..||...|++
T Consensus 4 CP~d-alkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P~g 82 (85)
T cd01958 4 CPRD-ALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVPPG 82 (85)
T ss_pred CCcc-hHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCCCC
Confidence 5544 234566655432 457889999999985 3 39999999543322 23333 3445667899999999
Q ss_pred CCC
Q 033313 114 FKC 116 (122)
Q Consensus 114 ~~C 116 (122)
|+|
T Consensus 83 f~C 85 (85)
T cd01958 83 FTC 85 (85)
T ss_pred CcC
Confidence 998
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=91.29 E-value=0.12 Score=36.57 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccc
Q 033313 10 RWSSFIMSRVACVLMLMMVMDGRV 33 (122)
Q Consensus 10 ~~~~~~~~~l~~~v~~~~~~~~~~ 33 (122)
||++|+++|+++++++.+..-++-
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~r 24 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNR 24 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHH
Confidence 899999988888777766554554
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=67.48 E-value=2.3 Score=28.69 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=32.1
Q ss_pred HhHHHHHHhcCccccccCCCC-------CC-------cC---CCCHHHHHHHHhhcCCCC
Q 033313 68 PACCQRIRVQHFECICPSITP-------KL-------AS---LVDINKAILLLKTCGRRV 110 (122)
Q Consensus 68 ~~CC~~vk~~d~~ClC~~~~~-------~~-------~~---~in~~~a~~Lp~~Cgv~~ 110 (122)
..||..++.++..|.|..+.. .. .. ..-...|.+||..||+..
T Consensus 45 qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Lp~~C~~~~ 104 (110)
T cd00261 45 QQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQAAQNLPSMCNLYP 104 (110)
T ss_pred HHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHHHHhhchhcCCCC
Confidence 579999999999999998821 10 00 123468999999999986
No 12
>PHA02975 hypothetical protein; Provisional
Probab=63.97 E-value=12 Score=24.17 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=14.7
Q ss_pred cccccchhhHHHHHHHHHHHHH
Q 033313 4 MKKKNSRWSSFIMSRVACVLML 25 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~v~~ 25 (122)
-+++++.|+.|++.+++.++++
T Consensus 37 ~~~~~~~~~~~ii~i~~v~~~~ 58 (69)
T PHA02975 37 PKKKSSLSIILIIFIIFITCIA 58 (69)
T ss_pred CCcCCchHHHHHHHHHHHHHHH
Confidence 4557788888887766654443
No 13
>PHA02819 hypothetical protein; Provisional
Probab=63.62 E-value=10 Score=24.57 Aligned_cols=15 Identities=13% Similarity=-0.075 Sum_probs=6.8
Q ss_pred cccchhhHHHHHHHH
Q 033313 6 KKNSRWSSFIMSRVA 20 (122)
Q Consensus 6 ~~~~~~~~~~~~~l~ 20 (122)
++|+.|+.|..++++
T Consensus 38 ~~~~~~~~~~~~ii~ 52 (71)
T PHA02819 38 KKTKKSFLRYYLIIG 52 (71)
T ss_pred ccccCChhHHHHHHH
Confidence 344444444444444
No 14
>PHA02844 putative transmembrane protein; Provisional
Probab=63.17 E-value=10 Score=24.82 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=7.4
Q ss_pred ccchhhHHHHHHHHH
Q 033313 7 KNSRWSSFIMSRVAC 21 (122)
Q Consensus 7 ~~~~~~~~~~~~l~~ 21 (122)
+.+.|+.|++.+++.
T Consensus 44 ~~~~~~~~ii~i~~v 58 (75)
T PHA02844 44 CSSSTKIWILTIIFV 58 (75)
T ss_pred CChhHHHHHHHHHHH
Confidence 344555555544443
No 15
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=61.37 E-value=2.7 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHHHHHHH
Q 033313 4 MKKKNSRWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~v~~~~ 27 (122)
|++|+.||..++..++++.+++.+
T Consensus 1 ~~~~~~rl~~~~~~~~~i~~~~~l 24 (131)
T PF03100_consen 1 MKRRKKRLILVVLGLVIIAAAIYL 24 (131)
T ss_dssp ------------------------
T ss_pred CCcceeehhhHHHHHHHHHHHHHH
Confidence 789999988777665555444333
No 16
>PHA02650 hypothetical protein; Provisional
Probab=60.35 E-value=12 Score=24.84 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=6.1
Q ss_pred cchhhHHHHHHHHH
Q 033313 8 NSRWSSFIMSRVAC 21 (122)
Q Consensus 8 ~~~~~~~~~~~l~~ 21 (122)
.+.|+.|++.+++.
T Consensus 46 ~~~~~~~ii~i~~v 59 (81)
T PHA02650 46 WFNGQNFIFLIFSL 59 (81)
T ss_pred CchHHHHHHHHHHH
Confidence 34444444444333
No 17
>PHA02844 putative transmembrane protein; Provisional
Probab=57.79 E-value=15 Score=24.04 Aligned_cols=25 Identities=16% Similarity=0.152 Sum_probs=20.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHH
Q 033313 4 MKKKNSRWSSFIMSRVACVLMLMMV 28 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~v~~~~~ 28 (122)
-.++|+.|+.|..++++++.+++..
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~ 62 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFAT 62 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHH
Confidence 4568999999999999877776653
No 18
>PHA03054 IMV membrane protein; Provisional
Probab=53.57 E-value=23 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=7.0
Q ss_pred ccchhhHHHHHHHHH
Q 033313 7 KNSRWSSFIMSRVAC 21 (122)
Q Consensus 7 ~~~~~~~~~~~~l~~ 21 (122)
+.+.|+.|++.+++.
T Consensus 44 ~~~~~~~~ii~l~~v 58 (72)
T PHA03054 44 GCWGWYWLIIIFFIV 58 (72)
T ss_pred CCchHHHHHHHHHHH
Confidence 344555555544443
No 19
>PHA02819 hypothetical protein; Provisional
Probab=50.66 E-value=24 Score=22.91 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.5
Q ss_pred ccccchhhHHHHHHHHHHHHHHH
Q 033313 5 KKKNSRWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~v~~~~ 27 (122)
.++.+.|+.|++.+++.++++.+
T Consensus 40 ~~~~~~~~~~ii~l~~~~~~~~~ 62 (71)
T PHA02819 40 TKKSFLRYYLIIGLVTIVFVIIF 62 (71)
T ss_pred ccCChhHHHHHHHHHHHHHHHHH
Confidence 46788999999888887666544
No 20
>PHA02650 hypothetical protein; Provisional
Probab=42.71 E-value=37 Score=22.55 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=18.0
Q ss_pred ccchhhHHHHHHHHHHHHHHH
Q 033313 7 KNSRWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 7 ~~~~~~~~~~~~l~~~v~~~~ 27 (122)
|++.|+.|..++++++++++.
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~ 62 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIV 62 (81)
T ss_pred cccCCchHHHHHHHHHHHHHH
Confidence 889999999999997777655
No 21
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=41.96 E-value=27 Score=26.99 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=17.2
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHh
Q 033313 4 MKKKNSRWSSFIMSRVACVLMLMMVM 29 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~v~~~~~~ 29 (122)
||||.+|+--+...+++..++-++.|
T Consensus 1 MK~~k~~~~~~~~~illg~~iGg~~G 26 (248)
T PF11368_consen 1 MKKKKKRILRFLLLILLGGLIGGFIG 26 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777666666666665555543
No 22
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=40.57 E-value=16 Score=22.58 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=17.9
Q ss_pred CCCCHhHHHHHHhcCcccccc
Q 033313 64 QPPSPACCQRIRVQHFECICP 84 (122)
Q Consensus 64 ~~Ps~~CC~~vk~~d~~ClC~ 84 (122)
...+.+||.++...+..|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 478899999999998888766
No 23
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=38.90 E-value=27 Score=21.74 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 033313 8 NSRWSSFIMSRVACVLMLM 26 (122)
Q Consensus 8 ~~~~~~~~~~~l~~~v~~~ 26 (122)
+.+|-+|++.++.+++.+.
T Consensus 37 ~~~~i~~~~~i~~l~v~~~ 55 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAVWIF 55 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556555555554444443
No 24
>PF12853 NADH_u_ox_C: C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit; InterPro: IPR024549 This domain is found in the C-terminal region of fungal NADH-ubiquinone oxidoreductase 21 kDa subunits [].
Probab=37.61 E-value=17 Score=24.61 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=16.8
Q ss_pred cccccchhhHHHHHHHHHHHH
Q 033313 4 MKKKNSRWSSFIMSRVACVLM 24 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~v~ 24 (122)
+--+|||||.+.+.++-++=+
T Consensus 27 vA~RNS~yS~l~~~viPWFNf 47 (90)
T PF12853_consen 27 VAARNSRYSQLFFAVIPWFNF 47 (90)
T ss_pred HHHhhhHHHHHHHHHhcchhh
Confidence 345899999999999887654
No 25
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=36.72 E-value=69 Score=17.93 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=9.5
Q ss_pred ccccchhhHHHHHHHH
Q 033313 5 KKKNSRWSSFIMSRVA 20 (122)
Q Consensus 5 ~~~~~~~~~~~~~~l~ 20 (122)
|||.|+..-.+..++.
T Consensus 3 kkkKS~fekiT~v~v~ 18 (35)
T PF13253_consen 3 KKKKSTFEKITMVVVW 18 (35)
T ss_pred CccccHHHHHHHHHHH
Confidence 5677777665544433
No 26
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=35.78 E-value=49 Score=19.29 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHHh
Q 033313 9 SRWSSFIMSRVACVLMLMMVM 29 (122)
Q Consensus 9 ~~~~~~~~~~l~~~v~~~~~~ 29 (122)
+|..++.+.+++.++++++.|
T Consensus 15 nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 15 NKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666653
No 27
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=30.73 E-value=63 Score=23.57 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=8.1
Q ss_pred cccccchhhHHHHHH
Q 033313 4 MKKKNSRWSSFIMSR 18 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (122)
|++|..||..++..+
T Consensus 2 ~~~~~~rl~~~~~~~ 16 (148)
T PRK13254 2 MKRKRRRLLIILGAL 16 (148)
T ss_pred CccchhHHHHHHHHH
Confidence 456666774444333
No 28
>PHA02692 hypothetical protein; Provisional
Probab=28.37 E-value=67 Score=20.78 Aligned_cols=10 Identities=10% Similarity=0.594 Sum_probs=4.4
Q ss_pred cchhhHHHHH
Q 033313 8 NSRWSSFIMS 17 (122)
Q Consensus 8 ~~~~~~~~~~ 17 (122)
.+.|+.+++.
T Consensus 42 ~~~~~~~ii~ 51 (70)
T PHA02692 42 GVPWTTVFLI 51 (70)
T ss_pred CcchHHHHHH
Confidence 3444444444
No 29
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=28.06 E-value=70 Score=23.62 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=15.1
Q ss_pred ccccccchhhHHHHHHHHHHHHHH
Q 033313 3 SMKKKNSRWSSFIMSRVACVLMLM 26 (122)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~~v~~~ 26 (122)
.+|||.+.|-+++..++...+.++
T Consensus 11 ~~~~k~~~~I~liv~ivl~~~a~~ 34 (159)
T COG1580 11 AKKKKKSLWILLIVLIVLLALAGA 34 (159)
T ss_pred ccCCCceeehHHHHHHHHHHHHHH
Confidence 466777777777666665544433
No 30
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.02 E-value=70 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=14.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHh
Q 033313 6 KKNSRWSSFIMSRVACVLMLMMVM 29 (122)
Q Consensus 6 ~~~~~~~~~~~~~l~~~v~~~~~~ 29 (122)
+++.||-..|++.+++.++-.+.+
T Consensus 1 ~~~~Rw~~~ILll~a~~~~~w~~~ 24 (188)
T COG3117 1 SMSRRWVYLILLLAALALSGWLLG 24 (188)
T ss_pred CcchhHHHHHHHHHHHHHHHHhhh
Confidence 367899986665555555544443
No 31
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=28.00 E-value=62 Score=17.52 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=8.6
Q ss_pred cccccchhhHHHHHHHH
Q 033313 4 MKKKNSRWSSFIMSRVA 20 (122)
Q Consensus 4 ~~~~~~~~~~~~~~~l~ 20 (122)
|+|.-.-|-++++++|.
T Consensus 1 Mrk~Lg~~~lAi~c~LL 17 (30)
T PF11466_consen 1 MRKHLGGWWLAIVCVLL 17 (30)
T ss_dssp --SS-SSHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHH
Confidence 66766777666655543
No 32
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=27.54 E-value=75 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.219 Sum_probs=11.2
Q ss_pred CCccccccc-hhhHHH-HHHHHHHHH
Q 033313 1 MGSMKKKNS-RWSSFI-MSRVACVLM 24 (122)
Q Consensus 1 ~~~~~~~~~-~~~~~~-~~~l~~~v~ 24 (122)
|+.|..+|+ .+..++ ..+|+++++
T Consensus 1 m~~~~~~~~~~~~aiiiSv~LHvlLi 26 (387)
T PRK09510 1 MSKATEQNDKLKRAIIISVVLHIILF 26 (387)
T ss_pred CCccccccccchhHHHHHHHHHHHHH
Confidence 777744433 333444 444444333
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.92 E-value=56 Score=22.08 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 033313 17 SRVACVLM 24 (122)
Q Consensus 17 ~~l~~~v~ 24 (122)
++||++++
T Consensus 11 l~LA~lLl 18 (95)
T PF07172_consen 11 LLLAALLL 18 (95)
T ss_pred HHHHHHHH
Confidence 33333333
No 34
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=26.33 E-value=64 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.841 Sum_probs=12.6
Q ss_pred cchhhHHHHHHHHHHHH
Q 033313 8 NSRWSSFIMSRVACVLM 24 (122)
Q Consensus 8 ~~~~~~~~~~~l~~~v~ 24 (122)
.-||-..+..+++++++
T Consensus 3 k~rwiili~iv~~Cl~l 19 (47)
T PRK10299 3 KFRWVVLVVVVLACLLL 19 (47)
T ss_pred eeeehHHHHHHHHHHHH
Confidence 46898888877777664
No 35
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=24.31 E-value=98 Score=20.11 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 033313 13 SFIMSRVAC 21 (122)
Q Consensus 13 ~~~~~~l~~ 21 (122)
.+++.+++.
T Consensus 50 ~~ii~ii~v 58 (72)
T PF12575_consen 50 ILIISIIFV 58 (72)
T ss_pred HHHHHHHHH
Confidence 344444333
No 36
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=23.78 E-value=1.2e+02 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=12.5
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 033313 10 RWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 10 ~~~~~~~~~l~~~v~~~~ 27 (122)
-|+++.+..++++.++..
T Consensus 7 VW~sYg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 7 VWSSYGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488888877777665554
No 37
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=21.84 E-value=67 Score=21.07 Aligned_cols=19 Identities=16% Similarity=0.511 Sum_probs=8.2
Q ss_pred cchhhHHHHHHHHHHHHHH
Q 033313 8 NSRWSSFIMSRVACVLMLM 26 (122)
Q Consensus 8 ~~~~~~~~~~~l~~~v~~~ 26 (122)
.++|.-++++++++++++.
T Consensus 11 k~~l~~~~isi~~~lvi~~ 29 (96)
T PF13800_consen 11 KSRLRTVVISIISALVIFI 29 (96)
T ss_pred HHHHHHHHHHHhhhhhhHH
Confidence 3444443344444444433
No 38
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.82 E-value=1.4e+02 Score=17.17 Aligned_cols=18 Identities=6% Similarity=0.348 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 033313 10 RWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 10 ~~~~~~~~~l~~~v~~~~ 27 (122)
-|+++.+..+.++.++..
T Consensus 8 VW~sYg~t~l~l~~li~~ 25 (45)
T TIGR03141 8 VWLAYGITALVLAGLILW 25 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 488888887777555544
No 39
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=20.98 E-value=67 Score=24.61 Aligned_cols=11 Identities=18% Similarity=-0.019 Sum_probs=4.8
Q ss_pred ccchhhHHHHH
Q 033313 7 KNSRWSSFIMS 17 (122)
Q Consensus 7 ~~~~~~~~~~~ 17 (122)
|+++|++++++
T Consensus 20 k~~~~~l~~ll 30 (200)
T PRK10617 20 TPSRLALGTLL 30 (200)
T ss_pred hhHHHHHHHHH
Confidence 34455444433
No 40
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=20.44 E-value=1e+02 Score=20.80 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 033313 10 RWSSFIMSRVACVLMLMM 27 (122)
Q Consensus 10 ~~~~~~~~~l~~~v~~~~ 27 (122)
|.+.|+-+.+++++++++
T Consensus 3 ~yp~WKyllil~vl~~~~ 20 (101)
T PF13721_consen 3 RYPLWKYLLILVVLLLGA 20 (101)
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 445556555555554444
Done!