BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033314
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BBO|O Chain O, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 135
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 40 GSGSPSFAIAVVLACIVMYDASGV 63
G GSP + +AVV ++Y+ SGV
Sbjct: 86 GKGSPEYWVAVVKPGRILYEISGV 109
>pdb|3KOW|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOW|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase Backsoaked
Complex
pdb|3KOX|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOX|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Anaerobic)
pdb|3KOY|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOY|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Aerobic)
pdb|3KOZ|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KOZ|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With Ornithine (Anaerobic)
pdb|3KP0|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP0|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase In Complex
With 2,4- Diaminobutyrate (Dab) (Aerobic)
pdb|3KP1|A Chain A, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|B Chain B, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|D Chain D, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
pdb|3KP1|C Chain C, Crystal Structure Of Ornithine 4,5 Aminomutase (Resting
State)
Length = 763
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 56 VMYDASGVRLHAGRQAEL---LNQIVCEFPPDHPLSSVRPLRELLGHTPLQVVAGGI 109
VM +A G R+ + +N +V PP+ + S +RE + TPL++VA +
Sbjct: 556 VMQEAEGTRIELKGRVPFSIDINSLV--IPPEPEILSEDEIREDIEKTPLKIVAATV 610
>pdb|3CH7|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Braziliensis
Length = 266
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%)
Query: 20 MPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC 79
P S +AT V++ + SP + ++ Y V L AG+ + + V
Sbjct: 172 FPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVL 231
Query: 80 EFPPDHPLSSVRPLRELLGHTPL 102
P PL R LR+ G L
Sbjct: 232 SESPTDPLPVSRFLRDCRGSVTL 254
>pdb|3CSS|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase From
Leishmania Guyanensis
Length = 267
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 32/83 (38%)
Query: 20 MPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC 79
P S +AT V++ + SP + ++ Y V L AG+ + + V
Sbjct: 173 FPDSVAATDEEHVVSVSFPSPTMSPKVWRVTLSKTVIQYAKHVVVLAAGKDKNWVVRGVL 232
Query: 80 EFPPDHPLSSVRPLRELLGHTPL 102
P PL R LR+ G L
Sbjct: 233 SESPTDPLPVSRFLRDCRGSVTL 255
>pdb|2ZE3|A Chain A, Crystal Structure Of Dfa0005 Complexed With
Alpha-Ketoglutarate: A Novel Member Of The IclPEPM
SUPERFAMILY FROM ALKALI-Tolerant Deinococcus Ficus
Length = 275
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 37 LQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFPPDHPL 87
L G+ SF +++LA + + LHA Q+ L++ F H L
Sbjct: 222 LDAGAARVSFGQSLMLATLGLVQRMAAELHAAEQSPLMDSYFLGFGEGHDL 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,157
Number of Sequences: 62578
Number of extensions: 125667
Number of successful extensions: 299
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)