BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033314
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O32107|YUID_BACSU Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain
168) GN=yuiD PE=4 SV=1
Length = 158
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 7 KRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLH 66
++ D + +GGMPSSHSA V+AL+ + L+ G S FA++ + A I M+DA+GVR H
Sbjct: 32 RKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRH 91
Query: 67 AGRQAELLNQIVCEF------PPDHP----LSSVRPLRELLGHTPLQVVAGGILGCVVAF 116
AG QA ++N++V +F D P + L+ELLGH P++V GG+ G ++
Sbjct: 92 AGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTL 151
Query: 117 LM 118
++
Sbjct: 152 VL 153
>sp|Q3B6F5|RL16_PELLD 50S ribosomal protein L16 OS=Pelodictyon luteolum (strain DSM 273)
GN=rplP PE=3 SV=1
Length = 139
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
VS A + G GSP F +AVV +M++A GV + +A
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEADGVPMEVATEA 117
>sp|B3EGY3|RL16_CHLL2 50S ribosomal protein L16 OS=Chlorobium limicola (strain DSM 245 /
NBRC 103803) GN=rplP PE=3 SV=1
Length = 139
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGV 63
VS A + G GSP F +AVV +M++A GV
Sbjct: 74 VSKKAAETRMGSGKGSPEFWVAVVKPGRIMFEAEGV 109
>sp|A8MLE7|RL16_ALKOO 50S ribosomal protein L16 OS=Alkaliphilus oremlandii (strain
OhILAs) GN=rplP PE=3 SV=1
Length = 147
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 40 GSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQ----IVCEF 81
G GSP + +AVV VM++ SGV R+A L I C+F
Sbjct: 86 GKGSPEYWVAVVKPGRVMFELSGVSEERAREAMRLAMHKLPIKCKF 131
>sp|B3EP54|RL16_CHLPB 50S ribosomal protein L16 OS=Chlorobium phaeobacteroides (strain
BS1) GN=rplP PE=3 SV=1
Length = 139
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
V+ A + G GSP F ++VV +M++A GV L +A
Sbjct: 74 VTKKAAETRMGSGKGSPEFWVSVVKPGRIMFEADGVPLDVATEA 117
>sp|A0A373|RK16_COFAR 50S ribosomal protein L16, chloroplastic OS=Coffea arabica GN=rpl16
PE=3 SV=1
Length = 135
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
++A + G GSP + +AVV ++Y+ GV H R+A
Sbjct: 74 ITARPAETRMGSGKGSPEYWVAVVKPGRILYEMGGVTEHIARRA 117
>sp|B0JHZ6|RL16_MICAN 50S ribosomal protein L16 OS=Microcystis aeruginosa (strain
NIES-843) GN=rplP PE=3 SV=1
Length = 139
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
V+ A + G GSP F +AVV +M++ +GV R+A
Sbjct: 74 VTQRAAETRMGSGKGSPEFWVAVVKPGFIMFEIAGVAEPVAREA 117
>sp|B8HMR1|RL16_CYAP4 50S ribosomal protein L16 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rplP PE=3 SV=1
Length = 140
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 40 GSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
G G+P F +AVV +MY+ +GV R+A
Sbjct: 86 GKGAPEFWVAVVKPGRIMYEIAGVSEEVAREA 117
>sp|Q8DMM5|RL16_THEEB 50S ribosomal protein L16 OS=Thermosynechococcus elongatus (strain
BP-1) GN=rplP PE=3 SV=1
Length = 143
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 40 GSGSPSFAIAVVLACIVMYDASGVRLHAGRQA 71
G GSP + +AVV +MY+ +GV R+A
Sbjct: 86 GKGSPEYWVAVVKPGRIMYEIAGVTEEVAREA 117
>sp|Q4A0C4|PTG3C_STAS1 PTS system glucose-specific EIICBA component OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=ptsG PE=3 SV=2
Length = 678
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 11 SKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQ 70
++ M +GG+ + + A+ VAIGL G G AIA + +VM G LH
Sbjct: 57 AEMMTGAGGIIFDNLPMIFAMGVAIGLASGDGVA--AIAAFVGYLVMNKTMGAFLHVS-- 112
Query: 71 AELLNQIVCEFPPDHPLSSVRPLRELLGHTPLQ--VVAGGILGCVVAF 116
PD+ + +LG LQ V G I+G + A+
Sbjct: 113 ------------PDNVNDAASGYASVLGIPTLQTGVFGGIIIGALAAW 148
>sp|Q57071|PTG3C_STACT PTS system glucose-specific EIICBA component OS=Staphylococcus
carnosus (strain TM300) GN=ptsG PE=1 SV=1
Length = 675
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 11 SKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRL 65
+K M +GG+ + A + AL VAIGL G G AIA + IV+ G+ L
Sbjct: 57 AKMMEGAGGIIFDNLAIIFALGVAIGLASGDGVA--AIAAFVGFIVLNKTMGMFL 109
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 69 RQAELLNQIVCEFPPDHPLSSVRPL-------RELLGHTPLQVVAGGILG 111
RQ L I+ FPP+HP+ V L E LGH L +V G LG
Sbjct: 1417 RQCHLTTPIM--FPPEHPVEEVGRLLLCCLLKHEDLGHVALSLVHAGALG 1464
>sp|B0RZU7|RL16_FINM2 50S ribosomal protein L16 OS=Finegoldia magna (strain ATCC 29328)
GN=rplP PE=3 SV=1
Length = 147
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 28 VSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQ 76
VS + I + G G+P + +AV+ V+++ +GV R+A L Q
Sbjct: 74 VSKKPIGIRMGSGKGAPEYWVAVIKPGRVLFEMAGVPEDVAREAMRLAQ 122
>sp|Q9BVR0|HRC23_HUMAN Putative HERC2-like protein 3 OS=Homo sapiens GN=HERC2P3 PE=5 SV=2
Length = 1158
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 18/118 (15%)
Query: 4 YKEKRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGV 63
Y E++ D GG P+S S S G S +F A+ I ++
Sbjct: 82 YNEEK-DEDHCSSPGGTPASKSRLCSHRRAL-----GDHSQAFLQAIADNNIQDHNVKDF 135
Query: 64 RLHAGR---QAELLNQIVCEFPPDHPLSSVRPL-------RELLGHTPLQVVAGGILG 111
R Q L I+ FPP+HP+ V L E LGH L +V G LG
Sbjct: 136 LCQIERYCRQCHLTTPIM--FPPEHPVEEVGRLLLCCLLKHEDLGHVALSLVHAGALG 191
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 69 RQAELLNQIVCEFPPDHPLSSVRPL-------RELLGHTPLQVVAGGILG 111
RQ L I FPP+HP+ V L E LGH L +V G LG
Sbjct: 1418 RQCHLTTPIT--FPPEHPVEEVGRLLLCCLLKHEDLGHVALSLVHVGTLG 1465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,338,722
Number of Sequences: 539616
Number of extensions: 1712989
Number of successful extensions: 4899
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4887
Number of HSP's gapped (non-prelim): 17
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)