Query 033314
Match_columns 122
No_of_seqs 116 out of 438
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 20:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 99.0 2.1E-09 7.1E-14 82.8 8.4 68 16-120 130-198 (230)
2 1d2t_A Acid phosphatase; all a 98.9 2.9E-09 1E-13 82.1 8.5 68 16-120 142-210 (231)
3 1qi9_A Protein (vanadium bromo 98.2 5E-06 1.7E-10 72.7 9.4 71 16-120 410-507 (556)
4 1up8_A Vanadium-dependent brom 97.9 3.4E-05 1.2E-09 68.0 8.8 70 16-119 479-573 (598)
5 3bb0_A Vanadium chloroperoxida 96.6 0.0011 3.6E-08 58.6 2.9 23 17-39 397-419 (609)
6 2ju0_B Phosphatidylinositol 4- 52.5 15 0.00053 22.5 3.3 38 73-112 11-49 (52)
7 2kdc_A Diacylglycerol kinase; 44.4 77 0.0026 22.0 6.5 44 27-82 36-79 (121)
8 2lx0_A Membrane fusion protein 37.8 15 0.00052 20.1 1.4 12 98-109 2-13 (32)
9 1col_A Colicin A; antibacteria 36.4 37 0.0013 26.1 4.0 33 10-42 129-168 (204)
10 2k1k_A Ephrin type-A receptor 29.4 43 0.0015 18.9 2.5 16 102-117 10-25 (38)
11 2ifo_A Inovirus; helical virus 24.6 52 0.0018 19.6 2.4 22 99-120 19-40 (46)
12 3bej_E Nuclear receptor coacti 24.1 24 0.00081 18.7 0.6 6 21-26 2-7 (26)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=98.96 E-value=2.1e-09 Score=82.78 Aligned_cols=68 Identities=22% Similarity=0.210 Sum_probs=56.0
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHhhhCCCCCCCCCCCCccc
Q 033314 16 DSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRE 95 (122)
Q Consensus 16 ~~GGMPSSHSA~v~alat~i~l~~G~~s~~fala~~~A~IVmyDA~gVRr~aG~qa~~lN~l~~~~~~~~~~~~~~~lke 95 (122)
...+|||+|++..+++++.+.+.... .....+.++..|.++ |.
T Consensus 130 ~~~SFPSGHa~~a~a~a~~l~~~~~~---~~~~~~~~a~~v~~S----------------------------------Rv 172 (230)
T 2ipb_A 130 KDGSYPSGHDAYSTLLALVLSQARPE---RAQELARRGWEFGQS----------------------------------RV 172 (230)
T ss_dssp TSCCSSCHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHH----------------------------------HH
T ss_pred CCCCcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------------------------HH
Confidence 56799999999999999888876542 122346778888887 88
Q ss_pred cCC-CChHHHHHHHHHHHHHHHHHhc
Q 033314 96 LLG-HTPLQVVAGGILGCVVAFLMRN 120 (122)
Q Consensus 96 ~lG-Htp~EV~~GallGi~ia~~~~~ 120 (122)
++| |.|.+|++|.++|++++..+++
T Consensus 173 ~~G~H~~sDVlaG~~lG~~~~~~~~~ 198 (230)
T 2ipb_A 173 ICGAHWQSDVDAGRYVGAVEFARLQT 198 (230)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHc
Confidence 999 9999999999999999987764
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=98.94 E-value=2.9e-09 Score=82.11 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=56.4
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHhhhCCCCCCCCCCCCccc
Q 033314 16 DSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFPPDHPLSSVRPLRE 95 (122)
Q Consensus 16 ~~GGMPSSHSA~v~alat~i~l~~G~~s~~fala~~~A~IVmyDA~gVRr~aG~qa~~lN~l~~~~~~~~~~~~~~~lke 95 (122)
...+|||+||+..+++++.+.+.... .....+.++..|.++ |.
T Consensus 142 ~~~SFPSGHa~~a~a~a~~l~~~~~~---~~~~~~~~a~~v~~S----------------------------------Rv 184 (231)
T 1d2t_A 142 KNGSYPSGHTSIGWATALVLAEINPQ---RQNEILKRGYELGQS----------------------------------RV 184 (231)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHH----------------------------------HH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------------------------HH
Confidence 56799999999999999988876542 123346788888887 88
Q ss_pred cCC-CChHHHHHHHHHHHHHHHHHhc
Q 033314 96 LLG-HTPLQVVAGGILGCVVAFLMRN 120 (122)
Q Consensus 96 ~lG-Htp~EV~~GallGi~ia~~~~~ 120 (122)
++| |.|.+|++|.++|..++..+++
T Consensus 185 ylGvH~psDVlaG~~lG~~~~~~~~~ 210 (231)
T 1d2t_A 185 ICGYHWQSDVDAARVVGSAVVATLHT 210 (231)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHc
Confidence 999 9999999999999999987765
No 3
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=98.22 E-value=5e-06 Score=72.68 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=54.1
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhccC-------cc------------------HHH-HHHHHHHHHHHhccchhhhhhH
Q 033314 16 DSGGMPSSHSATVSALAVAIGLQEGSG-------SP------------------SFA-IAVVLACIVMYDASGVRLHAGR 69 (122)
Q Consensus 16 ~~GGMPSSHSA~v~alat~i~l~~G~~-------s~------------------~fa-la~~~A~IVmyDA~gVRr~aG~ 69 (122)
...++||+||+..+++++.+....+-+ .+ .|. -...+|..+.++
T Consensus 410 ~~~SFPSGHAt~A~A~A~vL~~l~g~~~~~~~~~~r~~~~~~G~~r~~~~~~~l~~~~~l~~lA~lIg~S---------- 479 (556)
T 1qi9_A 410 THPSYPSGHATQNGAFATVLKALIGLDRGGDCYPDPVYPDDDGLKLIDFRGSCLTFEGEINKLAVNVAFG---------- 479 (556)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCHHHHTSBCSSCEEECTTSSSEEECCSSCCBHHHHHHHHHHHHHHH----------
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccceeehhhHHHHHHHHHHHH----------
Confidence 345999999999999999987765310 10 111 123477888887
Q ss_pred hHHHHHHHhhhCCCCCCCCCCCCccccCC-CChHHHHHHHHHHHHHHHHHhc
Q 033314 70 QAELLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMRN 120 (122)
Q Consensus 70 qa~~lN~l~~~~~~~~~~~~~~~lke~lG-Htp~EV~~GallGi~ia~~~~~ 120 (122)
|.++| |.|.+|++|+++|..++..++.
T Consensus 480 ------------------------RVYlGVHYPSDVlaG~lLG~~va~~vl~ 507 (556)
T 1qi9_A 480 ------------------------RQMLGIHYRFDGIQGLLLGETITVRTLH 507 (556)
T ss_dssp ------------------------HHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------HHeeCccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999 9999999999999999987653
No 4
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=97.91 E-value=3.4e-05 Score=67.97 Aligned_cols=70 Identities=20% Similarity=0.063 Sum_probs=55.2
Q ss_pred cccCCCchHHHHHHHHHHHHHHHhccCc----c--------------------HHHHHHHHHHHHHHhccchhhhhhHhH
Q 033314 16 DSGGMPSSHSATVSALAVAIGLQEGSGS----P--------------------SFAIAVVLACIVMYDASGVRLHAGRQA 71 (122)
Q Consensus 16 ~~GGMPSSHSA~v~alat~i~l~~G~~s----~--------------------~fala~~~A~IVmyDA~gVRr~aG~qa 71 (122)
....+||.||+..+|.++.+....+-+. + +......+|..+.++
T Consensus 479 ~~pSYPSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~S------------ 546 (598)
T 1up8_A 479 FHPSYGSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIG------------ 546 (598)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHH------------
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHH------------
Confidence 3679999999999999999988766332 1 122345677777766
Q ss_pred HHHHHHhhhCCCCCCCCCCCCccccCC-CChHHHHHHHHHHHHHHHHHh
Q 033314 72 ELLNQIVCEFPPDHPLSSVRPLRELLG-HTPLQVVAGGILGCVVAFLMR 119 (122)
Q Consensus 72 ~~lN~l~~~~~~~~~~~~~~~lke~lG-Htp~EV~~GallGi~ia~~~~ 119 (122)
|.++| |.|.+|++|..+|..++..+.
T Consensus 547 ----------------------RVYlGVHypSDVlAG~~LG~aVa~~vl 573 (598)
T 1up8_A 547 ----------------------RNMAGVHYFSDQFESLLLGEQVAIGIL 573 (598)
T ss_dssp ----------------------HHHHTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------hheeeeecHHHHHHHHHHHHHHHHHHH
Confidence 88999 999999999999999988764
No 5
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=96.56 E-value=0.0011 Score=58.59 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.8
Q ss_pred ccCCCchHHHHHHHHHHHHHHHh
Q 033314 17 SGGMPSSHSATVSALAVAIGLQE 39 (122)
Q Consensus 17 ~GGMPSSHSA~v~alat~i~l~~ 39 (122)
...+||+||++.+|.++.+....
T Consensus 397 ~pSYPSGHAt~s~A~A~vL~~~f 419 (609)
T 3bb0_A 397 FPAYPSGHATFGGAVFQMVRRYY 419 (609)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999999998887
No 6
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=52.47 E-value=15 Score=22.48 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHhhhCCCCCCC-CCCCCccccCCCChHHHHHHHHHHH
Q 033314 73 LLNQIVCEFPPDHPL-SSVRPLRELLGHTPLQVVAGGILGC 112 (122)
Q Consensus 73 ~lN~l~~~~~~~~~~-~~~~~lke~lGHtp~EV~~GallGi 112 (122)
++|+|-.-+-..+.. ...+++||.+ .|.=|++|++++-
T Consensus 11 ~~NklQ~ilFn~~~~~~~~~k~~ENv--~PalVL~s~v~sS 49 (52)
T 2ju0_B 11 VLNNLQTNLFNTSSGSDKNVKIHENV--APALVLSSMIMSA 49 (52)
T ss_dssp HHHHHTCCSSCSSCCCCTTCCSSCSH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccccchHHhhccc--cHHHHHHHHHHHH
Confidence 788886666433322 3334566654 6888999998863
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=44.44 E-value=77 Score=22.01 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhccchhhhhhHhHHHHHHHhhhCC
Q 033314 27 TVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVCEFP 82 (122)
Q Consensus 27 ~v~alat~i~l~~G~~s~~fala~~~A~IVmyDA~gVRr~aG~qa~~lN~l~~~~~ 82 (122)
.++.+...+++..+.+...+++-..--++|+ =++.+|.-+|..-
T Consensus 36 ~~~~~~i~~~~~l~~s~~e~~~li~~i~lVl------------~~EllNTAIE~vv 79 (121)
T 2kdc_A 36 VAVLLAVVIACWLDVDAITRVLLISSVMLVM------------IVEILNSAIEAVV 79 (121)
T ss_dssp HHHHHHHHHHHHCCCCCSHHHHHHHHHHHHH------------HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 4556677788888888777765444444444 3799999999774
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=37.80 E-value=15 Score=20.12 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=10.1
Q ss_pred CCChHHHHHHHH
Q 033314 98 GHTPLQVVAGGI 109 (122)
Q Consensus 98 GHtp~EV~~Gal 109 (122)
-||.-||++|.+
T Consensus 2 khtiweviaglv 13 (32)
T 2lx0_A 2 KHTIWEVIAGLV 13 (32)
T ss_dssp CSSSHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 399999999964
No 9
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=36.37 E-value=37 Score=26.08 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=22.2
Q ss_pred cccccc------cccCCCchHHHHHHH-HHHHHHHHhccC
Q 033314 10 DSKKML------DSGGMPSSHSATVSA-LAVAIGLQEGSG 42 (122)
Q Consensus 10 ~~~~~~------~~GGMPSSHSA~v~a-lat~i~l~~G~~ 42 (122)
||++|+ .-+|+-++....+++ ++.++.+..|.+
T Consensus 129 NW~Pl~~~lEs~~~~g~a~~val~~fs~~~~a~~~~~g~p 168 (204)
T 1col_A 129 NWGPLMLEVESWVLSGIASSVALGIFSATLGAYALSLGVP 168 (204)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcccc
Confidence 566665 457999888885544 444677777765
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=29.36 E-value=43 Score=18.89 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 033314 102 LQVVAGGILGCVVAFL 117 (122)
Q Consensus 102 ~EV~~GallGi~ia~~ 117 (122)
.-.++|+++|.+++++
T Consensus 10 ~GaIAGiVvG~v~gv~ 25 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHH
Confidence 4456888888776543
No 11
>2ifo_A Inovirus; helical virus; NMR {Filamentous phage} SCOP: h.1.4.1
Probab=24.65 E-value=52 Score=19.57 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHHHHHHHhc
Q 033314 99 HTPLQVVAGGILGCVVAFLMRN 120 (122)
Q Consensus 99 Htp~EV~~GallGi~ia~~~~~ 120 (122)
-++.--+++++||+++++..|+
T Consensus 19 ~t~i~~IG~aVLgV~v~i~v~k 40 (46)
T 2ifo_A 19 AGPIAAIGGAVLTVMVGIKVYK 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 4667778999999999998875
No 12
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=24.11 E-value=24 Score=18.73 Aligned_cols=6 Identities=83% Similarity=1.182 Sum_probs=3.8
Q ss_pred CchHHH
Q 033314 21 PSSHSA 26 (122)
Q Consensus 21 PSSHSA 26 (122)
||||++
T Consensus 2 pss~~s 7 (26)
T 3bej_E 2 PSSHSS 7 (26)
T ss_pred CCchhh
Confidence 666665
Done!