BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033315
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt)
Length = 128
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
GCGSAIASSS+ TEWVKGK + E +IKNT
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNT 91
>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex
Length = 129
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACGDVMKLQIKV++E G I DA FKT+
Sbjct: 4 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTY 62
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
GCGSAIASSS+ TEWVKGK + E +IKNT
Sbjct: 63 GCGSAIASSSLVTEWVKGKSLDEAQAIKNT 92
>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a)
Length = 128
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGSF+ ND VG+G+VGAPACG VMKLQIKV++E G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGAVMKLQIKVNDE-GIIEDARFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
GCGSAIASSS+ TEWVKGK + E +IKNT
Sbjct: 62 GCGSAIASSSLVTEWVKGKSLDEAQAIKNT 91
>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24. This Protein Is Not Apo, It Is A
Model Without Zinc Binding Constraints.
pdb|1R9P|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24
Length = 134
Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 1/90 (1%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y E VIDHY NPRNVGS +K D+ VGTG+VGAPACGDVM+LQIKVD + G I DA FKT+
Sbjct: 3 YSEKVIDHYENPRNVGSLDKKDSNVGTGMVGAPACGDVMQLQIKVD-DNGIIEDAKFKTY 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSIKNT 122
GCGSAIASSS+ TEWVKGK ++E +IKN+
Sbjct: 62 GCGSAIASSSLITEWVKGKSLEEAGAIKNS 91
>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu)
Length = 130
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 71/80 (88%), Gaps = 1/80 (1%)
Query: 43 NPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSS 102
NPRNVGS +K VGTGLVGAPACGDVMKLQI+VDE+ G+IVDA FKTFGCGSAIASSS
Sbjct: 9 NPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEK-GKIVDARFKTFGCGSAIASSS 67
Query: 103 VATEWVKGKQMQEVLSIKNT 122
+ATEWVKGK ++E L+IKNT
Sbjct: 68 LATEWVKGKTVEEALTIKNT 87
>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|D Chain D, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
Length = 153
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Query: 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
+Y + V DH+ NPRNVG E D G G VG P CGD+M + IKV + +I D F+T
Sbjct: 1 MYSDKVFDHFQNPRNVGKIEDAD---GVGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQT 55
Query: 92 FGCGSAIASSSVATEWVKGKQMQEVLSI 119
FGC +AIA+SS+ATE KGK ++E L I
Sbjct: 56 FGCAAAIATSSMATEMAKGKTIEEALKI 83
>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|B Chain B, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|C Chain C, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
Length = 157
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 33 YHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTF 92
Y+E V+DH+ NPRNVG E DA G G G PACG M IKV+ E I D FKTF
Sbjct: 5 YNEKVLDHFLNPRNVGVLE--DAN-GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTF 61
Query: 93 GCGSAIASSSVATEWVKGKQMQEVLSI 119
GCGSAIA SS+ TE VKGK +Q L++
Sbjct: 62 GCGSAIAVSSMLTEMVKGKPIQYALNL 88
>pdb|1XJS|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Iscu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
pdb|2AZH|A Chain A, Solution Structure Of Iron-Sulfur Cluster Assembly Protein
Sufu From Bacillus Subtilis, With Zinc Bound At The
Active Site. Northeast Structural Genomics Consortium
Target Sr17
Length = 147
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 8/89 (8%)
Query: 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIV-DACFK 90
LY + ++DHY NPRN G ND+ V + P CGD ++L +K+D G IV DA F+
Sbjct: 10 LYRQVIMDHYKNPRNKGVL--NDSIVVD--MNNPTCGDRIRLTMKLD---GDIVEDAKFE 62
Query: 91 TFGCGSAIASSSVATEWVKGKQMQEVLSI 119
GC ++AS+S+ T+ +KGK ++ LS+
Sbjct: 63 GEGCSISMASASMMTQAIKGKDIETALSM 91
>pdb|2QQ4|A Chain A, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|B Chain B, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|C Chain C, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|D Chain D, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|E Chain E, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|F Chain F, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|G Chain G, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|H Chain H, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|I Chain I, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
pdb|2QQ4|J Chain J, Crystal Structure Of Iron-Sulfur Cluster Biosynthesis
Protein Iscu (Ttha1736) From Thermus Thermophilus Hb8
Length = 138
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
LY E ++DHY +PRN G + G G+ P+CGD +++ + ++ +T I D F+
Sbjct: 7 LYREILLDHYQSPRNFGVLPQATKQAG-GM--NPSCGDQVEVMVLLEGDT--IADIRFQG 61
Query: 92 FGCGSAIASSSVATEWVKGKQMQEVLSIKN 121
GC + AS+S+ TE VKGK++ E L +
Sbjct: 62 QGCAISTASASLMTEAVKGKKVAEALELSR 91
>pdb|1SU0|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.3 A
Resolution
Length = 159
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKT 91
LY V DH P + G + +A + P CGDV+ L +K DE+ +I D F
Sbjct: 9 LYMAVVADHSKRPHHHGQLDGVEAV----QLNNPTCGDVISLTVKFDED--KIEDIAFAG 62
Query: 92 FGCGSAIASSSVATEWVKGKQMQEVLSIKN 121
GC + ASSS+ T+ V GK +E L++ +
Sbjct: 63 NGCTISTASSSMMTDAVIGKSKEEALALAD 92
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 654 YGDPANSFKVGSYTVVDALVRYDLARVGXAGSNVALHVNNLFDRE---YVASCFNTYGCF 710
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 711 WGAERQVVAT 720
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 634 YGDPANSFKVGSYTVVDALVRYDLARVGXAGSNVALHVNNLFDRE---YVASCFNTYGCF 690
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 691 WGAERQVVAT 700
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 66 ACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW 107
A G V +L + VDE + + FK F SS+AT +
Sbjct: 588 ALGRVSRLYVMVDESYAEEMSKLFKDFDSAEPEMRSSIATAY 629
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 66 ACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW 107
A G V +L + VDE + + FK F SS+AT +
Sbjct: 588 ALGRVSRLYVMVDESYAEEMSKLFKDFDSAEPEMRSSIATAY 629
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 636 YGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE---YVASCFNTYGCF 692
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 693 WGAERQVVAT 702
>pdb|1BY3|A Chain A, Fhua From E. Coli
pdb|1BY5|A Chain A, Fhua From E. Coli, With Its Ligand Ferrichrome
Length = 714
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 643 YGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE---YVASCFNTYGCF 699
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 700 WGAERQVVAT 709
>pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|2GRX|A Chain A, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
pdb|2GRX|B Chain B, Crystal Structure Of Tonb In Complex With Fhua, E. Coli
Outer Membrane Receptor For Ferrichrome
Length = 725
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 654 YGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE---YVASCFNTYGCF 710
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 711 WGAERQVVAT 720
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (fhua) From E.coli
Length = 723
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 41 YNNPRN---VGSFEKNDATVGTGLVGAPACGDVMKLQIK--VDEETGQIVDACFKTFGCG 95
Y +P N VGS+ DA V L G + L + D E V +CF T+GC
Sbjct: 652 YGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE---YVASCFNTYGCF 708
Query: 96 SAIASSSVAT 105
VAT
Sbjct: 709 WGAERQVVAT 718
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 HYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEET 81
+Y NP N +++ G G +G G+V + ++ +EET
Sbjct: 38 NYGNPDN-NRWQQTTLPFGNGKIGGTVWGEVSRERVTFNEET 78
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 HYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEET 81
+Y NP N +++ G G +G G+V + ++ +EET
Sbjct: 38 NYGNPDN-NRWQQTTLPFGNGKIGGTVWGEVSRERVTFNEET 78
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 40 HYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEET 81
+Y NP N +++ G G +G G+V + ++ +EET
Sbjct: 37 NYGNPDN-NRWQQTTLPFGNGKIGGTVWGEVSRERVTFNEET 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,980,629
Number of Sequences: 62578
Number of extensions: 103760
Number of successful extensions: 231
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 23
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)