Query 033315
Match_columns 122
No_of_seqs 113 out of 1101
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq4_A Iron-sulfur cluster bio 100.0 7.6E-33 2.6E-37 199.5 11.6 90 27-121 2-91 (138)
2 3lvl_A NIFU-like protein; prot 100.0 6E-33 2.1E-37 198.1 10.9 90 31-121 2-91 (129)
3 1xjs_A NIFU-like protein; SR17 100.0 1.7E-32 6E-37 199.5 9.8 89 27-121 5-93 (147)
4 1su0_B NIFU like protein ISCU; 100.0 5.8E-32 2E-36 199.0 11.1 88 28-121 5-92 (159)
5 4eb5_C NIFU protein (NIFU-1); 100.0 2.6E-31 8.9E-36 194.7 10.2 85 32-121 1-85 (153)
6 2z7e_A ISCU protein, NIFU-like 100.0 7.4E-31 2.5E-35 193.0 10.0 89 30-121 2-90 (157)
7 3g0m_A Cysteine desulfuration 86.1 6.9 0.00024 27.3 9.2 81 30-120 23-104 (141)
8 3r07_C Putative lipoate-protei 80.8 2.3 8E-05 27.5 4.3 45 67-114 16-60 (91)
9 1wlo_A SUFE protein; structura 71.2 23 0.00077 24.5 7.9 78 31-120 20-98 (136)
10 1fs1_B SKP1, cyclin A/CDK2-ass 68.2 4.5 0.00015 27.8 3.3 25 97-121 110-134 (141)
11 2e5a_A Lipoyltransferase 1; li 67.0 6.2 0.00021 31.1 4.2 43 70-114 269-311 (347)
12 2ast_A S-phase kinase-associat 60.3 7.6 0.00026 27.0 3.3 26 96-121 114-139 (159)
13 1ni7_A ER75, hypothetical prot 57.7 12 0.0004 26.6 3.9 53 64-120 58-111 (155)
14 2p1m_A SKP1-like protein 1A; F 56.1 7.2 0.00025 27.3 2.6 26 96-121 113-138 (160)
15 3v7d_A Suppressor of kinetocho 52.9 11 0.00038 26.7 3.2 23 99-121 124-146 (169)
16 1i4j_A 50S ribosomal protein L 45.1 9.9 0.00034 25.4 1.7 20 101-120 17-36 (110)
17 3o6u_A Uncharacterized protein 45.1 25 0.00084 23.9 3.8 24 67-92 17-40 (128)
18 3r8s_S 50S ribosomal protein L 40.8 13 0.00043 24.8 1.7 20 101-120 17-36 (110)
19 2z2q_B Coat protein gamma; wil 40.3 15 0.00051 20.9 1.7 25 5-29 6-30 (44)
20 1nov_D Nodamura virus coat pro 38.6 17 0.00057 20.7 1.7 25 5-29 6-30 (44)
21 2zjr_P 50S ribosomal protein L 34.7 15 0.0005 25.5 1.3 24 97-120 34-57 (134)
22 1vqz_A Lipoate-protein ligase, 32.7 46 0.0016 26.0 4.1 43 68-114 268-310 (341)
23 3a7r_A Lipoate-protein ligase 32.7 46 0.0016 25.8 4.1 43 68-114 261-303 (337)
24 4f98_A Hypothetical protein; P 28.4 1.1E+02 0.0037 18.9 4.9 30 65-95 36-67 (69)
25 1vq8_R 50S ribosomal protein L 26.8 28 0.00095 24.7 1.7 22 99-120 27-48 (155)
26 2k8s_A Thioredoxin; dimer, str 25.9 71 0.0024 18.4 3.3 24 88-111 6-29 (80)
27 1f8v_D Mature capsid protein g 25.9 14 0.00046 20.7 -0.1 23 5-27 6-28 (40)
28 2kzx_A Uncharacterized protein 24.7 93 0.0032 20.9 4.0 23 67-91 16-38 (131)
29 3pe9_A Fibronectin(III)-like m 23.7 1.4E+02 0.0047 19.1 4.6 26 68-93 16-41 (98)
30 3j21_S 50S ribosomal protein L 23.6 36 0.0012 24.1 1.7 21 100-120 31-51 (155)
31 2wpn_B Periplasmic [nifese] hy 21.3 1.1E+02 0.0037 24.9 4.5 43 70-121 30-72 (495)
32 2zkr_r 60S ribosomal protein L 20.2 44 0.0015 24.3 1.7 27 95-121 23-49 (184)
33 1r5q_A KAI A, circadian oscill 20.1 43 0.0015 22.2 1.4 19 29-47 14-32 (102)
34 2l55_A SILB,silver efflux prot 20.1 1.3E+02 0.0043 18.7 3.7 26 65-90 48-74 (82)
No 1
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=100.00 E-value=7.6e-33 Score=199.46 Aligned_cols=90 Identities=33% Similarity=0.604 Sum_probs=83.8
Q ss_pred chhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHH
Q 033315 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE 106 (122)
Q Consensus 27 ~~~~~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e 106 (122)
+++.++|+++|+|||+||+|+|.+++++. +++.+||+|||+|+|||+|++ |+|+|++|+++||++++||+|+|++
T Consensus 2 ~~l~~lY~~~Ildh~~nP~n~G~l~~~~~---~~~~~np~CGD~i~l~l~v~~--~~I~d~~f~~~GCais~ASaS~~te 76 (138)
T 2qq4_A 2 SVLDELYREILLDHYQSPRNFGVLPQATK---QAGGMNPSCGDQVEVMVLLEG--DTIADIRFQGQGCAISTASASLMTE 76 (138)
T ss_dssp CHHHHHHHHHHHHHHHSCTTBSCCTTCSE---EEEEECTTTCCEEEEEEEEET--TEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCCCe---EEeeCCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHH
Confidence 36789999999999999999999998874 467789999999999999987 9999999999999999999999999
Q ss_pred HHcCCCHHHHhcccc
Q 033315 107 WVKGKQMQEVLSIKN 121 (122)
Q Consensus 107 ~i~GKtleeA~~i~~ 121 (122)
+++|||++||.+|.+
T Consensus 77 ~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 77 AVKGKKVAEALELSR 91 (138)
T ss_dssp HHTTSBHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHH
Confidence 999999999998864
No 2
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=100.00 E-value=6e-33 Score=198.08 Aligned_cols=90 Identities=72% Similarity=1.185 Sum_probs=83.2
Q ss_pred HhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcC
Q 033315 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKG 110 (122)
Q Consensus 31 ~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~G 110 (122)
++|+++|+|||+||+|+|.+++++..+++++.+||+|||+|+|+|+|+++ |+|+|++|+++||++++||+|+|+++++|
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GCais~ASaS~~te~i~G 80 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKG 80 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCC-CeEEEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999998876667778999999999999999832 89999999999999999999999999999
Q ss_pred CCHHHHhcccc
Q 033315 111 KQMQEVLSIKN 121 (122)
Q Consensus 111 KtleeA~~i~~ 121 (122)
||++||+.|.+
T Consensus 81 kt~~ea~~i~~ 91 (129)
T 3lvl_A 81 KSLDEAQAIKN 91 (129)
T ss_dssp CCHHHHHTCCH
T ss_pred CcHHHHHHHHH
Confidence 99999999875
No 3
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=99.98 E-value=1.7e-32 Score=199.47 Aligned_cols=89 Identities=36% Similarity=0.677 Sum_probs=83.2
Q ss_pred chhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHH
Q 033315 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE 106 (122)
Q Consensus 27 ~~~~~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e 106 (122)
++++++|+++|+|||+||+|+|.+ +++. +++.+||+|||+|+|||+|++ |+|+|++|+++||++++||+|+|++
T Consensus 5 ~~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--~~I~d~~f~~~GCais~ASaS~mte 78 (147)
T 1xjs_A 5 ANLDTLYRQVIMDHYKNPRNKGVL-NDSI---VVDMNNPTCGDRIRLTMKLDG--DIVEDAKFEGEGCSISMASASMMTQ 78 (147)
T ss_dssp TTTHHHHHHHHHHHHHSCCCCCCC-CSSE---EEEEEETTTTEEEEEEEECCS--SBCCEEEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CeEEEEEEEecCCHHHHHHHHHHHH
Confidence 578999999999999999999999 8874 456789999999999999987 8999999999999999999999999
Q ss_pred HHcCCCHHHHhcccc
Q 033315 107 WVKGKQMQEVLSIKN 121 (122)
Q Consensus 107 ~i~GKtleeA~~i~~ 121 (122)
+++|||++||.+|.+
T Consensus 79 ~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 79 AIKGKDIETALSMSK 93 (147)
T ss_dssp HHTTSBHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHH
Confidence 999999999999864
No 4
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=99.97 E-value=5.8e-32 Score=199.03 Aligned_cols=88 Identities=35% Similarity=0.580 Sum_probs=81.7
Q ss_pred hhhHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHH
Q 033315 28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW 107 (122)
Q Consensus 28 ~~~~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~ 107 (122)
+++++|+++|+|||+||+|+|.+ +++. +++.+||+|||+|+|||+|++ |+|+|++|+++||++++||+|+|+++
T Consensus 5 ~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--g~I~d~~F~~~GCais~ASaS~mte~ 78 (159)
T 1su0_B 5 KLNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFDE--DKIEDIAFAGNGCTISTASSSMMTDA 78 (159)
T ss_dssp -CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEESS--SSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999 8875 456789999999999999987 89999999999999999999999999
Q ss_pred HcCCCHHHHhcccc
Q 033315 108 VKGKQMQEVLSIKN 121 (122)
Q Consensus 108 i~GKtleeA~~i~~ 121 (122)
++|||++||.+|.+
T Consensus 79 v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 79 VIGKSKEEALALAD 92 (159)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCcHHHHHHHHH
Confidence 99999999999864
No 5
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=99.97 E-value=2.6e-31 Score=194.72 Aligned_cols=85 Identities=52% Similarity=0.931 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCC
Q 033315 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK 111 (122)
Q Consensus 32 ~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GK 111 (122)
+|+++|+|||+||+|+|.+++++. ++..+||+|||+|+|||+|++ |+|+|++|+++||++++||+|+|+++++||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~nP~CGD~i~l~lkv~d--~~I~D~~F~g~GCais~ASaS~mtelv~GK 75 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDADG---VGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQTFGCAAAIATSSMATEMAKGK 75 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCSE---EEEEECTTTCCEEEEEEEESS--SBEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEecC--CeEEEEEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 699999999999999999998874 457789999999999999987 899999999999999999999999999999
Q ss_pred CHHHHhcccc
Q 033315 112 QMQEVLSIKN 121 (122)
Q Consensus 112 tleeA~~i~~ 121 (122)
|++||..|++
T Consensus 76 tleEA~~i~~ 85 (153)
T 4eb5_C 76 TIEEALKITR 85 (153)
T ss_dssp BHHHHTTCCH
T ss_pred CHHHHHHhhH
Confidence 9999998864
No 6
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=99.97 E-value=7.4e-31 Score=192.97 Aligned_cols=89 Identities=52% Similarity=0.812 Sum_probs=81.1
Q ss_pred hHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHc
Q 033315 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVK 109 (122)
Q Consensus 30 ~~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~ 109 (122)
.++|+++|++||+||+|+|.+++++. ++..+||+|||+|+|||+|++++|+|+|++|+++||++++||+|+|+++++
T Consensus 2 ~~lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v~ 78 (157)
T 2z7e_A 2 SFEYNEKVLDHFLNPRNVGVLEDANG---VGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMVK 78 (157)
T ss_dssp TTHHHHHHHHHHHSCSSBSCCTTCSE---EEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998874 567789999999999999952228999999999999999999999999999
Q ss_pred CCCHHHHhcccc
Q 033315 110 GKQMQEVLSIKN 121 (122)
Q Consensus 110 GKtleeA~~i~~ 121 (122)
|||++||+.|.+
T Consensus 79 Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 79 GKPIQYALNLTY 90 (157)
T ss_dssp TSBHHHHHHCCH
T ss_pred CCcHHHHHHHHh
Confidence 999999999864
No 7
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=86.06 E-value=6.9 Score=27.34 Aligned_cols=81 Identities=7% Similarity=0.012 Sum_probs=55.5
Q ss_pred hHhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEecc-chHHHHHHHHHHHHH
Q 033315 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWV 108 (122)
Q Consensus 30 ~~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~G-Cais~ASasi~~e~i 108 (122)
|+.--+.|+++.+.-.. +++.... ....-+-|-..|.+..+++++ |+ +.|.++. =.|...-..++...+
T Consensus 23 we~Ry~~LI~lgk~Lp~---lpe~~k~---~~~~V~GCqS~VWl~~~~~~~-g~---l~f~adSDA~IvkGl~alL~~~~ 92 (141)
T 3g0m_A 23 WEEKYLYIIELGQRLAE---LNPQDRN---PQNTIHGCQSQVWIVMRRNAN-GI---IELQGDSDAAIVKGLMAVVFILY 92 (141)
T ss_dssp HHHHHHHHHHHHHTSCC---CCGGGCS---GGGBCCSSSSCEEEEEEECTT-SB---EEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC---CCHHHcC---ccCcCCCCccCeeEEEEEcCC-CE---EEEEecCccHHHHHHHHHHHHHH
Confidence 44434567888876433 2222110 012346799999999888543 64 7777764 468889999999999
Q ss_pred cCCCHHHHhccc
Q 033315 109 KGKQMQEVLSIK 120 (122)
Q Consensus 109 ~GKtleeA~~i~ 120 (122)
.|+|.+|++.+.
T Consensus 93 ~G~tp~eIl~~d 104 (141)
T 3g0m_A 93 HQMTAQDIVHFD 104 (141)
T ss_dssp TTCBHHHHHHCC
T ss_pred cCCCHHHHHhCC
Confidence 999999998764
No 8
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=80.81 E-value=2.3 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCCCHH
Q 033315 67 CGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (122)
Q Consensus 67 CGD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GKtle 114 (122)
.| .|.+++.+++ |+|+++++.++==....-.-.-+.+.++|.+.+
T Consensus 16 ~G-~v~v~l~v~~--G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~ 60 (91)
T 3r07_C 16 KG-LIRVTLDLDG--NRIKDIHISGDFFMFPEDSINRLEDMLRGSSIE 60 (91)
T ss_dssp SC-EEEEEEEEET--TEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTT
T ss_pred Cc-EEEEEEEEcC--CEEEEEEEEcccCCCcchhHHHHHHHHCCCCHH
Confidence 45 9999999998 999999998873211112344566667777765
No 9
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=71.15 E-value=23 Score=24.46 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=54.5
Q ss_pred HhHHHHHHHHHhCCCCCCCCCCCCCceeeeeecCCCCCCEEEEEEEEeCCCCcEEeeEEEecc-chHHHHHHHHHHHHHc
Q 033315 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWVK 109 (122)
Q Consensus 31 ~~Y~~~Ile~~~~P~n~g~l~~~~~~~~~g~~~np~CGD~i~l~l~vd~~~g~I~di~f~~~G-Cais~ASasi~~e~i~ 109 (122)
+.| +.|+++.+.-... ++.. . ...-+-|-..|.++..+++ +. ..+.|.++. =.|...-..++...+.
T Consensus 20 ~Ry-~~LI~lgk~Lp~l---pe~~-~----~~~V~GCqS~VWl~~~~~~--~g-~~l~f~~dSDA~IvkGl~alL~~~~~ 87 (136)
T 1wlo_A 20 LRS-QVLLEYAAKVPPP---PPGV-E----LERVHECQTPFFVHADVEG--GK-VRLYFHVPDEAPTVKAFAGLLREGLE 87 (136)
T ss_dssp HHH-HHHHHHHHTCCCC---CSSC-C----CEECTTSSSCCEEEEEEET--TE-EEEEEECSSCCHHHHHHHHHHHHTTT
T ss_pred HHH-HHHHHHHhhCCCC---Chhh-h----hccCCCCccCeEEEEEEeC--Cc-eEEEEecCCccHHHHHHHHHHHHHHc
Confidence 445 4567777654432 2211 1 1234679999999988776 43 257888775 5688899999999999
Q ss_pred CCCHHHHhccc
Q 033315 110 GKQMQEVLSIK 120 (122)
Q Consensus 110 GKtleeA~~i~ 120 (122)
|+|.+|++.+.
T Consensus 88 G~tp~eIl~~d 98 (136)
T 1wlo_A 88 GESPEAVLEVP 98 (136)
T ss_dssp TCCTTTTTSSC
T ss_pred CCCHHHHHhCC
Confidence 99999998764
No 10
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=68.24 E-value=4.5 Score=27.75 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHhcccc
Q 033315 97 AIASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 97 s~ASasi~~e~i~GKtleeA~~i~~ 121 (122)
.-.++..++++++|||.+|..++.+
T Consensus 110 ldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 110 LDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 4456778899999999999887653
No 11
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=66.96 E-value=6.2 Score=31.07 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=35.0
Q ss_pred EEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCCCHH
Q 033315 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (122)
Q Consensus 70 ~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GKtle 114 (122)
.|++.+.|++ |+|+++++.+.|=........-+.+.++|.+.+
T Consensus 269 ~v~~~~~v~~--g~I~~~~i~~~~d~~~~~~~~~l~~~L~G~~~~ 311 (347)
T 2e5a_A 269 EIKVFIDVKN--GRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFS 311 (347)
T ss_dssp EEEEEEEEET--TEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSC
T ss_pred EEEEEEEEcC--CEEEEEEEEecCCcCChhHHHHHHHHhCCCCCC
Confidence 7888888888 999999999777666666667788889998664
No 12
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=60.30 E-value=7.6 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHhcccc
Q 033315 96 SAIASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 96 is~ASasi~~e~i~GKtleeA~~i~~ 121 (122)
+.-.++..++++++|||.+|..++.+
T Consensus 114 Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 114 LLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34556778999999999999887653
No 13
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=57.65 E-value=12 Score=26.64 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=41.9
Q ss_pred CCCCCCEEEEEEEEeCCCCcEEeeEEEecc-chHHHHHHHHHHHHHcCCCHHHHhccc
Q 033315 64 APACGDVMKLQIKVDEETGQIVDACFKTFG-CGSAIASSSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 64 np~CGD~i~l~l~vd~~~g~I~di~f~~~G-Cais~ASasi~~e~i~GKtleeA~~i~ 120 (122)
-+-|-..|.++..++++ | .+.|.++. =.|...-..++...+.|+|.+|++.+.
T Consensus 58 V~GCqS~VWl~~~~~~d-g---~l~F~adSDA~IvkGL~AlL~~~~~G~tp~eIl~~d 111 (155)
T 1ni7_A 58 IAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQS 111 (155)
T ss_dssp ECSSSSCEEEECCCCSS-S---CCCCEEEESSHHHHHHHHHHHHHTTTCCHHHHHHSC
T ss_pred CCCCccCeeEEEEEcCC-C---EEEEeeCCccHHHHHHHHHHHHHHcCCCHHHHHhCC
Confidence 46699999888765332 5 46677664 568889999999999999999998764
No 14
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=56.15 E-value=7.2 Score=27.28 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHhcccc
Q 033315 96 SAIASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 96 is~ASasi~~e~i~GKtleeA~~i~~ 121 (122)
+.-.++..++++++|||.+|..++.+
T Consensus 113 Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 113 LLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 44566778899999999999887643
No 15
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=52.90 E-value=11 Score=26.68 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCHHHHhcccc
Q 033315 99 ASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 99 ASasi~~e~i~GKtleeA~~i~~ 121 (122)
.++-.++++++|||.+|..++.+
T Consensus 124 l~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 124 AGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHcC
Confidence 34667889999999999887643
No 16
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=45.14 E-value=9.9 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCCHHHHhccc
Q 033315 101 SSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 101 asi~~e~i~GKtleeA~~i~ 120 (122)
+-.++++|.|++++||+.+.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L 36 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNIL 36 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 46789999999999998764
No 17
>3o6u_A Uncharacterized protein CPE2226; structural genomics, protein structure initiative, NESG, CPR biology; 2.50A {Clostridium perfringens}
Probab=45.12 E-value=25 Score=23.88 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.4
Q ss_pred CCCEEEEEEEEeCCCCcEEeeEEEec
Q 033315 67 CGDVMKLQIKVDEETGQIVDACFKTF 92 (122)
Q Consensus 67 CGD~i~l~l~vd~~~g~I~di~f~~~ 92 (122)
-|..+.+.+.|++ |+|+++.|...
T Consensus 17 ~g~~v~V~VTVkd--gkIt~i~~~~~ 40 (128)
T 3o6u_A 17 HGYKAKLSIKVSD--GKITEAKYNEF 40 (128)
T ss_dssp TSEEEEEEEEESS--SSEEEEEEEEE
T ss_pred cCCeEEEEEEEEC--CEEEEEEEecc
Confidence 5667999999998 99999999753
No 18
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=40.84 E-value=13 Score=24.81 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCHHHHhccc
Q 033315 101 SSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 101 asi~~e~i~GKtleeA~~i~ 120 (122)
+-.++++|.|++++||+.+.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L 36 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDIL 36 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 45789999999999998764
No 19
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=40.33 E-value=15 Score=20.86 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=21.4
Q ss_pred chhhHHhHHHHhhhhCCCCCcCchh
Q 033315 5 GSKRLLRQATAAAVAAPRPVQVAAM 29 (122)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (122)
+-||+|.|-..++..-|-||.....
T Consensus 6 rVk~ilks~l~a~S~iPGPVG~~as 30 (44)
T 2z2q_B 6 RVKSIIKSSLAAASNIPGPIGVAAS 30 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHH
Confidence 4689999999999999999986543
No 20
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=38.62 E-value=17 Score=20.70 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.3
Q ss_pred chhhHHhHHHHhhhhCCCCCcCchh
Q 033315 5 GSKRLLRQATAAAVAAPRPVQVAAM 29 (122)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (122)
+-||+|.+-.+++..-|-||.....
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~as 30 (44)
T 1nov_D 6 RVRSILKSGLNFASTIPGPVGVAAT 30 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHH
Confidence 4689999999999999999976543
No 21
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=34.74 E-value=15 Score=25.53 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHhccc
Q 033315 97 AIASSSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 97 s~ASasi~~e~i~GKtleeA~~i~ 120 (122)
|-==+-.++++|.|++++||+.+.
T Consensus 34 SpkK~r~Va~~IRG~~v~eAl~~L 57 (134)
T 2zjr_P 34 SPRKVRLVVDVIRGKSVQDAEDLL 57 (134)
T ss_dssp CHHHHHHHHHHSTTSBHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHH
Confidence 333467899999999999998765
No 22
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=32.69 E-value=46 Score=26.01 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred CCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCCCHH
Q 033315 68 GDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (122)
Q Consensus 68 GD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GKtle 114 (122)
+-.|++++.|++ |+|+++++.++-=. ..--.-+.+.++|.+.+
T Consensus 268 ~G~v~~~~~v~~--g~I~~~~i~gDf~~--~~~~~~l~~~L~G~~~~ 310 (341)
T 1vqz_A 268 SGKVEVFANVTE--SKIQDIKIYGDFFG--IEDVAAVEDVLRGVKYE 310 (341)
T ss_dssp TEEEEEEEEEET--TEEEEEEEEESCCC--SSCTHHHHHHHTTCBSS
T ss_pred CCcEEEEEEEeC--CEEEEEEEECCcCC--cchHHHHHHHhCCCCCC
Confidence 458999999998 99999999887211 12123467788888554
No 23
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=32.68 E-value=46 Score=25.83 Aligned_cols=43 Identities=19% Similarity=0.137 Sum_probs=31.5
Q ss_pred CCEEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCCCHH
Q 033315 68 GDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (122)
Q Consensus 68 GD~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GKtle 114 (122)
+-.|++++.|++ |+|+++++.++-=. .....-+.+.++|.+.+
T Consensus 261 ~g~v~~~~~v~~--g~I~~~~i~gD~~~--~~~~~~l~~~L~G~~~~ 303 (337)
T 3a7r_A 261 WGGVELHFDVEK--GHITRAQVFTDSLN--PAPLEALAGRLQGCLYR 303 (337)
T ss_dssp TEEEEEEEEEET--TEEEEEEEEECCSC--CHHHHHHHHHTTTCBSS
T ss_pred CCcEEEEEEEcC--CEEEEEEEECCCCC--chHHHHHHHHhCCCCCC
Confidence 457999999988 99999999886211 22335577888888654
No 24
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=28.38 E-value=1.1e+02 Score=18.88 Aligned_cols=30 Identities=17% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCCCCEEEEEEEEeCCCCcEEeeEEEecc--ch
Q 033315 65 PACGDVMKLQIKVDEETGQIVDACFKTFG--CG 95 (122)
Q Consensus 65 p~CGD~i~l~l~vd~~~g~I~di~f~~~G--Ca 95 (122)
..|| .|...+.-+|..|++..+.|+..| |.
T Consensus 36 ~~C~-Vvpa~MtY~DS~G~~~~l~Y~~~g~~C~ 67 (69)
T 4f98_A 36 TRTG-VVPVTVVYEDHSGELHKIRFLEWGGSTS 67 (69)
T ss_dssp TCCS-EEEEEEEEECTTSCEEEEEEEEECSCCC
T ss_pred Cccc-eEccEEEEEcCCCCEEEEEEEeeccccc
Confidence 4686 788887776656999999998654 74
No 25
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=26.83 E-value=28 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCHHHHhccc
Q 033315 99 ASSSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 99 ASasi~~e~i~GKtleeA~~i~ 120 (122)
==+-.++++|.|+++++|+.+.
T Consensus 27 kk~r~va~~IrG~~v~~A~~~L 48 (155)
T 1vq8_R 27 KHSKAIAREIKGKTAGEAVDYL 48 (155)
T ss_dssp HHHHHHHHHHTTSBHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHH
Confidence 3456789999999999998765
No 26
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=25.95 E-value=71 Score=18.42 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=19.5
Q ss_pred EEEeccchHHHHHHHHHHHHHcCC
Q 033315 88 CFKTFGCGSAIASSSVATEWVKGK 111 (122)
Q Consensus 88 ~f~~~GCais~ASasi~~e~i~GK 111 (122)
-|.+.+|+.|.....++-+++...
T Consensus 6 ~f~~~~C~~C~~~~~~l~~~~~~~ 29 (80)
T 2k8s_A 6 IFYHAGCPVCVSAEQAVANAIDPS 29 (80)
T ss_dssp EEEECSCHHHHHHHHHHHHHSCTT
T ss_pred EEeCCCCCchHHHHHHHHHHHHhc
Confidence 477899999999999887776543
No 27
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=25.89 E-value=14 Score=20.66 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=10.4
Q ss_pred chhhHHhHHHHhhhhCCCCCcCc
Q 033315 5 GSKRLLRQATAAAVAAPRPVQVA 27 (122)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (122)
+-||+|.+-.+++..-|-||...
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~ 28 (40)
T 1f8v_D 6 GVLRVLNQISGTLSVIPGPVGTI 28 (40)
T ss_dssp HHHHHHHHTCCC-----------
T ss_pred HHHHHHHHHHHHHhcCCCchhHH
Confidence 45899999999999999998754
No 28
>2kzx_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium thermocellum}
Probab=24.66 E-value=93 Score=20.87 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCCEEEEEEEEeCCCCcEEeeEEEe
Q 033315 67 CGDVMKLQIKVDEETGQIVDACFKT 91 (122)
Q Consensus 67 CGD~i~l~l~vd~~~g~I~di~f~~ 91 (122)
-|-.+.+.+.|.+ |+|.++.|..
T Consensus 16 ~G~~~~V~vtV~d--gkIt~i~i~~ 38 (131)
T 2kzx_A 16 SGWKDTVTIEVKN--GKIVSVDWNA 38 (131)
T ss_dssp TSEEEEEEEEEET--TEEEEEEEEE
T ss_pred CCCeEEEEEEEEC--CEEEEEEEEE
Confidence 4556788888888 9999999985
No 29
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=23.71 E-value=1.4e+02 Score=19.10 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=19.1
Q ss_pred CCEEEEEEEEeCCCCcEEeeEEEecc
Q 033315 68 GDVMKLQIKVDEETGQIVDACFKTFG 93 (122)
Q Consensus 68 GD~i~l~l~vd~~~g~I~di~f~~~G 93 (122)
|+.|.|.....+..|.|.++.|..+|
T Consensus 16 g~~v~i~a~A~D~dg~V~kVef~vdg 41 (98)
T 3pe9_A 16 NEFLKITATASDSDGKISRVDFLVDG 41 (98)
T ss_dssp TSEEEEEEEECCSSSCEEEEEEEETT
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEECC
Confidence 45677777775544679999999887
No 30
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.58 E-value=36 Score=24.11 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHhccc
Q 033315 100 SSSVATEWVKGKQMQEVLSIK 120 (122)
Q Consensus 100 Sasi~~e~i~GKtleeA~~i~ 120 (122)
=+-.++++|.|+++++|..+.
T Consensus 31 k~r~va~~IrG~~v~~A~~~L 51 (155)
T 3j21_S 31 LAVEVCRELRGMMLNDALRYL 51 (155)
T ss_dssp HHHHHHHHHTTCBHHHHHHHH
T ss_pred HHHHHHHHHCCCcHHHHHHHH
Confidence 356789999999999998865
No 31
>2wpn_B Periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=21.28 E-value=1.1e+02 Score=24.93 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.8
Q ss_pred EEEEEEEEeCCCCcEEeeEEEeccchHHHHHHHHHHHHHcCCCHHHHhcccc
Q 033315 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 70 ~i~l~l~vd~~~g~I~di~f~~~GCais~ASasi~~e~i~GKtleeA~~i~~ 121 (122)
.++|.+.+++ |+|.++.+.+.=-= =+-.+++|++..|+..+++
T Consensus 30 ~lri~l~vd~--~~V~~a~~~g~~~R-------G~Ekil~gr~~~~a~~i~~ 72 (495)
T 2wpn_B 30 HLKAEVVVEN--GKVVDARLSGGMYR-------GFETILRGRDPRDASQIVQ 72 (495)
T ss_dssp CEEEEEEEET--TEEEEEEEEECBCC-------CHHHHTTTSCGGGHHHHGG
T ss_pred cEEEEEEEeC--CEEEEEEEeccccc-------hHHHHHCCCCHHHHHHHhh
Confidence 5888888987 99999987543110 0344677888888777654
No 32
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=20.23 E-value=44 Score=24.35 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHhcccc
Q 033315 95 GSAIASSSVATEWVKGKQMQEVLSIKN 121 (122)
Q Consensus 95 ais~ASasi~~e~i~GKtleeA~~i~~ 121 (122)
-+|-==+-.++++|.|+++++|+.+.+
T Consensus 23 rvS~kk~r~va~~IrG~~v~~A~~~L~ 49 (184)
T 2zkr_r 23 RVHFKNTRETAQAIKGMHIRKATKYLK 49 (184)
T ss_dssp CSCHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344445678899999999999998754
No 33
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=20.14 E-value=43 Score=22.23 Aligned_cols=19 Identities=5% Similarity=0.314 Sum_probs=14.6
Q ss_pred hhHhHHHHHHHHHhCCCCC
Q 033315 29 MPRLYHENVIDHYNNPRNV 47 (122)
Q Consensus 29 ~~~~Y~~~Ile~~~~P~n~ 47 (122)
+...|+++++.||.+|...
T Consensus 14 L~~~YR~ill~YF~~d~~~ 32 (102)
T 1r5q_A 14 LKSDYRQILLSYFTTDKAL 32 (102)
T ss_dssp HHHHHHHHHHHTTSCC--C
T ss_pred HHHHHHHHHHHHhCCcHHH
Confidence 5677999999999988653
No 34
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=20.12 E-value=1.3e+02 Score=18.71 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=18.7
Q ss_pred CCCCCEEEEEEEEeCC-CCcEEeeEEE
Q 033315 65 PACGDVMKLQIKVDEE-TGQIVDACFK 90 (122)
Q Consensus 65 p~CGD~i~l~l~vd~~-~g~I~di~f~ 90 (122)
-.-||.|+|.+...++ .-+|++++-.
T Consensus 48 lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 48 LKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp CSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred CCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 4569999999998763 1278877643
Done!