Query 033317
Match_columns 122
No_of_seqs 107 out of 375
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:26:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1654 Microtubule-associated 100.0 8.9E-53 1.9E-57 293.0 12.5 116 2-117 1-116 (116)
2 cd01611 GABARAP Ubiquitin doma 100.0 6.5E-52 1.4E-56 291.8 13.8 112 6-117 1-112 (112)
3 PTZ00380 microtubule-associate 100.0 1.6E-49 3.4E-54 282.2 12.5 111 4-119 2-113 (121)
4 PF02991 Atg8: Autophagy prote 100.0 9.8E-49 2.1E-53 272.5 11.9 104 14-117 1-104 (104)
5 cd01612 APG12_C Ubiquitin-like 100.0 1.9E-33 4.2E-38 190.1 10.4 85 32-117 2-87 (87)
6 PF04110 APG12: Ubiquitin-like 99.9 1.3E-25 2.8E-30 151.8 6.6 79 38-117 8-87 (87)
7 KOG3439 Protein conjugation fa 99.9 4.8E-24 1E-28 148.9 9.7 80 37-117 36-116 (116)
8 PF04106 APG5: Autophagy prote 96.7 0.0039 8.4E-08 47.6 5.1 100 10-111 88-195 (197)
9 PF11816 DUF3337: Domain of un 95.4 0.16 3.4E-06 41.5 9.1 87 26-112 211-328 (331)
10 PF11976 Rad60-SLD: Ubiquitin- 91.8 0.41 8.9E-06 29.9 4.4 49 47-95 12-60 (72)
11 PF13019 Telomere_Sde2: Telome 91.0 1.9 4.1E-05 32.3 7.8 79 30-111 1-82 (162)
12 cd06406 PB1_P67 A PB1 domain i 89.8 2.6 5.6E-05 28.1 6.8 56 51-109 16-76 (80)
13 KOG2660 Locus-specific chromos 87.2 1.4 3.1E-05 36.4 5.2 73 41-114 159-235 (331)
14 KOG2976 Protein involved in au 86.2 11 0.00024 30.5 9.5 92 11-110 161-273 (278)
15 smart00213 UBQ Ubiquitin homol 84.9 3.3 7.2E-05 24.4 4.9 47 47-94 11-57 (64)
16 cd00196 UBQ Ubiquitin-like pro 83.3 5.5 0.00012 21.7 5.5 40 45-85 7-46 (69)
17 PF10302 DUF2407: DUF2407 ubiq 78.1 13 0.00028 25.3 6.4 71 41-112 10-94 (97)
18 cd06398 PB1_Joka2 The PB1 doma 77.9 6.8 0.00015 26.4 4.8 52 47-98 11-72 (91)
19 PF00240 ubiquitin: Ubiquitin 76.0 2.8 6.1E-05 25.6 2.4 46 49-95 9-54 (69)
20 PF03671 Ufm1: Ubiquitin fold 75.1 13 0.00029 24.5 5.4 58 43-101 13-71 (76)
21 cd01813 UBP_N UBP ubiquitin pr 74.9 6.3 0.00014 25.2 3.9 45 51-95 15-61 (74)
22 cd01763 Sumo Small ubiquitin-r 74.1 11 0.00024 24.6 5.1 62 27-95 9-70 (87)
23 COG3343 RpoE DNA-directed RNA 73.8 4.8 0.0001 30.6 3.5 47 55-117 30-77 (175)
24 cd01806 Nedd8 Nebb8-like ubiq 70.7 15 0.00034 22.5 4.9 58 49-111 14-72 (76)
25 cd01769 UBL Ubiquitin-like dom 70.2 19 0.00042 21.2 5.2 57 49-110 11-68 (69)
26 cd01790 Herp_N Homocysteine-re 69.3 29 0.00064 22.8 7.1 62 49-111 15-79 (79)
27 cd01798 parkin_N amino-termina 69.1 11 0.00023 23.3 3.9 57 49-109 12-68 (70)
28 cd01807 GDX_N ubiquitin-like d 66.8 12 0.00026 23.4 3.9 45 49-94 14-58 (74)
29 cd01805 RAD23_N Ubiquitin-like 65.2 15 0.00032 22.8 4.1 57 49-110 14-73 (77)
30 cd01810 ISG15_repeat2 ISG15 ub 63.6 32 0.00069 21.4 5.4 58 50-111 13-70 (74)
31 PF00837 T4_deiodinase: Iodoth 63.3 11 0.00023 30.0 3.7 35 4-39 158-192 (237)
32 PF14836 Ubiquitin_3: Ubiquiti 62.2 9.7 0.00021 25.8 2.8 47 51-97 19-71 (88)
33 PF12752 SUZ: SUZ domain; Int 62.0 9.1 0.0002 23.6 2.5 19 7-25 35-53 (59)
34 cd05992 PB1 The PB1 domain is 61.9 36 0.00078 21.1 7.3 63 47-109 11-79 (81)
35 cd06396 PB1_NBR1 The PB1 domai 61.5 44 0.00095 22.2 5.9 62 46-110 10-78 (81)
36 cd01809 Scythe_N Ubiquitin-lik 59.6 29 0.00064 20.9 4.6 45 49-94 14-58 (72)
37 cd01799 Hoil1_N Ubiquitin-like 59.6 32 0.00069 22.0 4.9 57 49-108 16-72 (75)
38 cd01803 Ubiquitin Ubiquitin. U 59.4 27 0.00058 21.4 4.4 59 49-111 14-72 (76)
39 cd01796 DDI1_N DNA damage indu 58.7 18 0.00039 22.6 3.5 56 49-108 13-69 (71)
40 PF00788 RA: Ras association ( 58.3 44 0.00096 21.0 6.9 64 46-109 17-89 (93)
41 cd01808 hPLIC_N Ubiquitin-like 57.1 44 0.00095 20.6 5.7 58 49-110 13-70 (71)
42 cd01812 BAG1_N Ubiquitin-like 57.0 25 0.00055 21.3 4.0 45 49-94 13-57 (71)
43 cd01794 DC_UbP_C dendritic cel 54.7 34 0.00073 21.5 4.3 45 49-94 12-56 (70)
44 PF12436 USP7_ICP0_bdg: ICP0-b 54.5 17 0.00036 28.5 3.4 60 49-112 88-153 (249)
45 smart00666 PB1 PB1 domain. Pho 54.2 52 0.0011 20.5 6.9 62 47-108 12-78 (81)
46 cd06407 PB1_NLP A PB1 domain i 54.0 30 0.00066 22.7 4.1 53 47-99 11-68 (82)
47 cd01776 Rin1_RA Ubiquitin doma 54.0 32 0.0007 23.2 4.2 37 48-84 16-54 (87)
48 PF08154 NLE: NLE (NUC135) dom 52.9 54 0.0012 20.4 6.4 42 44-85 14-56 (65)
49 cd01791 Ubl5 UBL5 ubiquitin-li 50.5 42 0.00091 21.3 4.3 56 51-110 17-72 (73)
50 PTZ00044 ubiquitin; Provisiona 48.7 51 0.0011 20.3 4.5 45 49-94 14-58 (76)
51 cd01793 Fubi Fubi ubiquitin-li 47.6 60 0.0013 20.1 4.7 59 47-109 10-68 (74)
52 PF14533 USP7_C2: Ubiquitin-sp 45.2 18 0.00039 27.6 2.3 50 46-95 34-90 (213)
53 PF00564 PB1: PB1 domain; Int 44.6 77 0.0017 19.7 5.0 52 50-101 16-71 (84)
54 cd01792 ISG15_repeat1 ISG15 ub 43.1 44 0.00095 21.2 3.6 59 51-112 18-77 (80)
55 cd01795 USP48_C USP ubiquitin- 42.7 52 0.0011 23.0 4.0 25 50-74 19-43 (107)
56 cd01800 SF3a120_C Ubiquitin-li 42.6 53 0.0011 20.6 3.8 58 50-111 12-69 (76)
57 PF09358 UBA_e1_C: Ubiquitin-a 42.3 24 0.00052 24.9 2.4 53 47-99 34-94 (125)
58 cd01804 midnolin_N Ubiquitin-l 41.1 92 0.002 19.7 5.4 59 49-112 15-73 (78)
59 cd01815 BMSC_UbP_N Ubiquitin-l 38.9 78 0.0017 20.6 4.2 43 52-94 17-61 (75)
60 PRK02363 DNA-directed RNA poly 38.9 40 0.00086 24.2 3.1 50 53-117 17-66 (129)
61 cd01768 RA RA (Ras-associating 36.8 96 0.0021 19.6 4.5 54 46-99 13-73 (87)
62 TIGR01682 moaD molybdopterin c 36.8 39 0.00084 21.4 2.5 41 49-89 19-62 (80)
63 KOG1209 1-Acyl dihydroxyaceton 36.5 73 0.0016 25.7 4.4 51 46-100 55-110 (289)
64 PF03568 Peptidase_C50: Peptid 34.8 2E+02 0.0044 23.8 7.1 71 28-100 204-287 (383)
65 smart00537 DCX Domain in the D 33.7 1.4E+02 0.003 19.6 5.8 75 31-117 5-84 (89)
66 PF11543 UN_NPL4: Nuclear pore 33.5 47 0.001 21.6 2.6 57 48-108 16-77 (80)
67 PF06970 RepA_N: Replication i 33.2 19 0.00042 23.4 0.6 17 99-115 42-58 (76)
68 PF09379 FERM_N: FERM N-termin 33.1 1.1E+02 0.0024 18.9 4.2 35 47-81 8-42 (80)
69 PF08825 E2_bind: E2 binding d 32.3 56 0.0012 21.6 2.8 45 51-95 2-59 (84)
70 PRK06437 hypothetical protein; 32.2 65 0.0014 20.1 3.0 39 49-92 14-52 (67)
71 cd06408 PB1_NoxR The PB1 domai 31.3 82 0.0018 21.1 3.5 50 49-100 15-68 (86)
72 PF11470 TUG-UBL1: GLUT4 regul 31.1 76 0.0016 20.0 3.1 40 44-84 5-44 (65)
73 PF12436 USP7_ICP0_bdg: ICP0-b 30.8 1.2E+02 0.0025 23.8 4.8 53 28-83 175-227 (249)
74 cd00754 MoaD Ubiquitin domain 30.6 49 0.0011 20.5 2.2 41 49-89 19-62 (80)
75 PF14560 Ubiquitin_2: Ubiquiti 30.5 67 0.0015 20.6 2.9 33 48-80 16-49 (87)
76 cd01802 AN1_N ubiquitin-like d 30.3 1.1E+02 0.0023 20.8 4.0 59 49-111 41-99 (103)
77 COG3698 Predicted periplasmic 30.3 48 0.001 26.4 2.5 40 48-98 189-229 (250)
78 cd01766 Ufm1 Urm1-like ubiquit 30.3 91 0.002 20.7 3.4 58 43-101 13-71 (82)
79 PRK04115 hypothetical protein; 29.3 2.1E+02 0.0047 20.8 5.6 55 17-80 50-113 (137)
80 cd00952 CHBPH_aldolase Trans-o 28.6 74 0.0016 25.5 3.4 29 10-38 58-86 (309)
81 TIGR00601 rad23 UV excision re 28.4 2.4E+02 0.0051 23.8 6.5 60 50-113 15-77 (378)
82 PF01886 DUF61: Protein of unk 28.2 1.5E+02 0.0033 21.3 4.6 56 16-80 46-111 (132)
83 cd06411 PB1_p51 The PB1 domain 28.1 1.8E+02 0.004 19.2 5.9 57 51-107 12-74 (78)
84 PF01704 UDPGP: UTP--glucose-1 27.2 1.3E+02 0.0027 25.7 4.7 55 13-86 89-143 (420)
85 PF11767 SET_assoc: Histone ly 27.2 1.6E+02 0.0035 18.6 4.2 54 50-111 6-62 (66)
86 PF04441 Pox_VERT_large: Poxvi 26.8 71 0.0015 28.9 3.2 55 54-113 58-123 (700)
87 PF10336 DUF2420: Protein of u 26.5 2.2E+02 0.0048 19.6 5.4 63 55-117 10-98 (113)
88 cd01775 CYR1_RA Ubiquitin doma 25.8 1.6E+02 0.0035 20.3 4.2 35 49-83 16-52 (97)
89 PF00255 GSHPx: Glutathione pe 25.8 95 0.002 21.4 3.1 29 88-118 38-66 (108)
90 PRK13125 trpA tryptophan synth 25.5 79 0.0017 24.4 3.0 17 100-118 150-166 (244)
91 cd00951 KDGDH 5-dehydro-4-deox 25.4 90 0.002 24.7 3.4 101 9-113 49-161 (289)
92 cd01617 DCX Ubiquitin-like dom 25.0 1.9E+02 0.0042 18.4 4.6 62 46-114 14-77 (80)
93 TIGR02313 HpaI-NOT-DapA 2,4-di 25.0 93 0.002 24.7 3.4 102 9-113 49-166 (294)
94 PF02597 ThiS: ThiS family; I 25.0 32 0.00069 21.1 0.6 41 47-87 13-54 (77)
95 COG1019 Predicted nucleotidylt 24.6 3.1E+02 0.0066 20.6 7.5 66 10-75 54-122 (158)
96 PRK08364 sulfur carrier protei 24.5 75 0.0016 19.8 2.2 38 49-91 17-54 (70)
97 smart00148 PLCXc Phospholipase 23.9 97 0.0021 21.8 3.0 42 54-95 67-109 (135)
98 PF14060 DUF4252: Domain of un 23.6 99 0.0021 21.7 3.0 24 88-111 20-43 (155)
99 TIGR00683 nanA N-acetylneurami 23.5 1E+02 0.0022 24.4 3.3 99 10-112 51-165 (290)
100 cd01797 NIRF_N amino-terminal 23.4 1.5E+02 0.0032 18.9 3.5 58 52-113 19-76 (78)
101 PF05768 DUF836: Glutaredoxin- 22.8 80 0.0017 20.0 2.2 18 20-37 40-57 (81)
102 smart00314 RA Ras association 22.8 2.1E+02 0.0046 18.1 5.9 39 43-81 13-54 (90)
103 cd03483 MutL_Trans_MLH1 MutL_T 22.7 88 0.0019 21.7 2.5 26 74-99 47-75 (127)
104 PF15243 ANAPC15: Anaphase-pro 22.5 88 0.0019 21.3 2.4 20 13-32 35-54 (92)
105 PRK11130 moaD molybdopterin sy 22.5 95 0.0021 19.7 2.5 36 55-91 25-65 (81)
106 cd01938 ADPGK_ADPPFK ADP-depen 22.4 1.1E+02 0.0024 26.3 3.5 38 1-38 216-253 (445)
107 smart00295 B41 Band 4.1 homolo 22.2 2.5E+02 0.0054 20.0 5.0 51 47-97 15-71 (207)
108 PF00501 AMP-binding: AMP-bind 22.1 2.6E+02 0.0056 22.0 5.4 48 20-84 2-56 (417)
109 COG2002 AbrB Regulators of sta 22.1 1E+02 0.0022 20.2 2.7 21 63-83 20-40 (89)
110 PF06395 CDC24: CDC24 Calponin 22.0 62 0.0013 21.9 1.6 23 56-79 44-66 (89)
111 PF00701 DHDPS: Dihydrodipicol 22.0 93 0.002 24.3 2.8 100 9-113 50-165 (289)
112 TIGR01683 thiS thiamine biosyn 22.0 1.8E+02 0.004 17.4 3.7 35 46-85 4-38 (64)
113 cd01782 AF6_RA_repeat1 Ubiquit 22.0 1.9E+02 0.0041 20.5 4.0 35 49-83 39-79 (112)
114 PRK03170 dihydrodipicolinate s 22.0 1.1E+02 0.0025 23.9 3.3 100 9-113 50-165 (292)
115 PRK04147 N-acetylneuraminate l 21.9 1.1E+02 0.0024 24.1 3.3 29 10-38 54-82 (293)
116 PRK13669 hypothetical protein; 21.8 81 0.0017 20.9 2.0 27 75-101 45-74 (78)
117 cd06401 PB1_TFG The PB1 domain 21.5 2.5E+02 0.0054 18.7 4.4 21 50-70 14-35 (81)
118 PRK03620 5-dehydro-4-deoxygluc 21.5 1.2E+02 0.0026 24.2 3.4 29 9-37 56-84 (303)
119 PF05717 TnpB_IS66: IS66 Orf2 21.5 1.2E+02 0.0026 20.8 3.0 27 57-83 16-43 (107)
120 PF08216 CTNNBL: Catenin-beta- 21.3 91 0.002 21.8 2.3 20 10-29 33-52 (108)
121 PF08469 NPHI_C: Nucleoside tr 21.2 66 0.0014 23.8 1.7 22 86-107 101-122 (148)
122 PF13905 Thioredoxin_8: Thiore 21.2 1.6E+02 0.0035 18.3 3.4 23 90-112 21-43 (95)
123 PRK10953 cysJ sulfite reductas 20.5 6.1E+02 0.013 22.5 9.0 88 26-114 432-523 (600)
124 cd00137 PI-PLCc Catalytic doma 20.5 1.4E+02 0.003 23.6 3.5 52 55-108 73-127 (274)
125 cd01760 RBD Ubiquitin-like dom 20.4 2.5E+02 0.0053 17.9 5.4 54 42-95 6-62 (72)
126 PF02645 DegV: Uncharacterised 20.0 1.5E+02 0.0033 23.1 3.7 58 46-113 32-91 (280)
No 1
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=100.00 E-value=8.9e-53 Score=292.98 Aligned_cols=116 Identities=73% Similarity=1.169 Sum_probs=113.7
Q ss_pred ccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 2 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
|+.+||++++||+|++|+.+||+|||+|||||||+.+++++|+|||+|||||.++|||||+.+|||||+|++++|+||+|
T Consensus 1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV 80 (116)
T KOG1654|consen 1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV 80 (116)
T ss_pred CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 82 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 82 n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
||.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus 81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG 116 (116)
T KOG1654|consen 81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG 116 (116)
T ss_pred cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence 999998899999999999999999999999999999
No 2
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=100.00 E-value=6.5e-52 Score=291.80 Aligned_cols=112 Identities=71% Similarity=1.202 Sum_probs=111.1
Q ss_pred ccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC
Q 033317 6 FKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (122)
Q Consensus 6 fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l 85 (122)
||++||||+|++|+++||+|||++||||||+++++++|.|+++||+||+++||++|+.+||++|++++++||||||||++
T Consensus 1 fk~~~s~e~R~~e~~~ir~kyp~~iPVIvE~~~~~~~p~l~k~KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~ 80 (112)
T cd01611 1 FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSL 80 (112)
T ss_pred CccccCHHHHHHHHHHHHHHCCCceEEEEEEcCCCCcccccCceEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 86 PPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 86 p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
|++|++||+||++|||+||||||+||+++|||
T Consensus 81 p~~~~~~~~lY~~~kd~DGfLyl~Ys~~~tfG 112 (112)
T cd01611 81 PPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112 (112)
T ss_pred CCchhHHHHHHHHhCCCCCEEEEEEeccccCC
Confidence 99999999999999999999999999999999
No 3
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=100.00 E-value=1.6e-49 Score=282.25 Aligned_cols=111 Identities=33% Similarity=0.593 Sum_probs=107.4
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceE-EecCCCchHHHHHHHHHhhcCCCCceEEEEEc
Q 033317 4 SYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (122)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kf-lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn 82 (122)
++||++||||+|++|+++||+|||++||||||++++++ +++|| |||+|+||+||+++||+||+|++++ +|||||
T Consensus 2 ~~fK~~~s~e~R~~e~~~Ir~kyPdrIPVIvEk~~~s~----dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVn 76 (121)
T PTZ00380 2 SAYHSSNPVEARRAECARLQAKYPGHVAVVVEAAEKAG----SKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIE 76 (121)
T ss_pred cchhhcCCHHHHHHHHHHHHHHCCCccEEEEeecCCCC----CceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEEC
Confidence 67999999999999999999999999999999998887 79999 6999999999999999999999999 999999
Q ss_pred CCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCCC
Q 033317 83 NVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSH 119 (122)
Q Consensus 83 ~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~~ 119 (122)
|++|+++++||+||++|||+||||||+||+++|||.+
T Consensus 77 n~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~e~tFG~~ 113 (121)
T PTZ00380 77 GSTPAVTATVGDIADACKRDDGFLYVSVRTEQAMGAF 113 (121)
T ss_pred CccCCccchHHHHHHHhcCCCCeEEEEEccccccccc
Confidence 9999999999999999999999999999999999963
No 4
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=100.00 E-value=9.8e-49 Score=272.50 Aligned_cols=104 Identities=64% Similarity=1.141 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHH
Q 033317 14 KRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMS 93 (122)
Q Consensus 14 ~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~ 93 (122)
+|++|+++||+|||+|||||||+++++++|.||++|||||+++||+||+.+||++|++++++||||||||++|+++++||
T Consensus 1 ~R~~e~~~ir~kyP~~IPVIvEr~~~s~lp~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 1 ERKEESERIREKYPDKIPVIVERYPKSKLPDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEE-TTSSS---SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred CcHHHHHHHHHHCCCccEEEEEEccCCChhhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEEecCCcccC
Q 033317 94 AIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 94 ~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
+||++|||+||||||+||++++||
T Consensus 81 elY~~~kdeDGFLY~~Ys~e~tFG 104 (104)
T PF02991_consen 81 ELYEKYKDEDGFLYMTYSSEETFG 104 (104)
T ss_dssp HHHHHHB-TTSSEEEEEESSSSBC
T ss_pred HHHHHhCCCCCeEEEEeccccccC
Confidence 999999999999999999999999
No 5
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=100.00 E-value=1.9e-33 Score=190.06 Aligned_cols=85 Identities=24% Similarity=0.460 Sum_probs=79.2
Q ss_pred EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC-CCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 32 VIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 32 VIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~-lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
|.|.-.+.+++|.|+++||+||+++||++|+.+||++|++++++||||||||+ .|++|++||+||++| |+||||||+|
T Consensus 2 v~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 2 VTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred eEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 34444456899999999999999999999999999999999999999999997 699999999999999 8999999999
Q ss_pred cCCcccC
Q 033317 111 SGENTFG 117 (122)
Q Consensus 111 s~~~~fG 117 (122)
|+++|||
T Consensus 81 s~~~afG 87 (87)
T cd01612 81 CKTVAFG 87 (87)
T ss_pred eCccccC
Confidence 9999999
No 6
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=99.92 E-value=1.3e-25 Score=151.84 Aligned_cols=79 Identities=24% Similarity=0.523 Sum_probs=59.1
Q ss_pred CCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEEecCCccc
Q 033317 38 ERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTYSGENTF 116 (122)
Q Consensus 38 ~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~f 116 (122)
+-+++|.|+++||.|.++.|++.++.+|||+|+++++++||+|||+++ |++|+++|+||++|+ .||.|.|+||.++||
T Consensus 8 ~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~sFaPspDe~vg~L~~~f~-~~~~Liv~Ys~t~A~ 86 (87)
T PF04110_consen 8 AIGSAPILKQKKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINNSFAPSPDETVGDLYRCFG-TNGELIVSYSKTPAW 86 (87)
T ss_dssp EETT----S--EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEEEE---TTSBHHHHHHHH--BTTBEEEEEESSS--
T ss_pred ecCCCccccCcEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcCccCCCchhHHHHHHHHhC-CCCEEEEEEeccccc
Confidence 347899999999999999999999999999999999999999999965 999999999999997 899999999999999
Q ss_pred C
Q 033317 117 G 117 (122)
Q Consensus 117 G 117 (122)
|
T Consensus 87 G 87 (87)
T PF04110_consen 87 G 87 (87)
T ss_dssp -
T ss_pred C
Confidence 9
No 7
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.8e-24 Score=148.92 Aligned_cols=80 Identities=26% Similarity=0.507 Sum_probs=76.4
Q ss_pred cCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEEecCCcc
Q 033317 37 AERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTYSGENT 115 (122)
Q Consensus 37 ~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~ 115 (122)
.+-+++|.|+++||.|+.+.||+.++.+|||.|+|.+.++|||||||++ ||+|+.+|+||+||+ .||.|.++||...|
T Consensus 36 ~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sFAPsPDq~v~~Ly~cf~-~d~~Lvl~Yc~s~A 114 (116)
T KOG3439|consen 36 RAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSFAPSPDQIVGNLYECFG-TDGKLVLNYCISVA 114 (116)
T ss_pred eccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCccCCCchhHHHHHHHhcC-CCCEEEEEEeeecc
Confidence 3447999999999999999999999999999999999999999999976 999999999999996 89999999999999
Q ss_pred cC
Q 033317 116 FG 117 (122)
Q Consensus 116 fG 117 (122)
||
T Consensus 115 ~G 116 (116)
T KOG3439|consen 115 WG 116 (116)
T ss_pred cC
Confidence 99
No 8
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents autophagy protein 5 (Apg5).; GO: 0006914 autophagy, 0005737 cytoplasm; PDB: 2DYM_G 2DYO_A.
Probab=96.66 E-value=0.0039 Score=47.60 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHH---hhCCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhh--cCCCCceEEEEE
Q 033317 10 HDLEKRRAEAARIR---EKYPDRIPVIVEKAERSDIPNIDKKKYLVP---ADLTVGQFVYVIRKRI--KLSAEKAIFIFV 81 (122)
Q Consensus 10 ~~~e~R~~e~~~i~---~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~L--~l~~~~slflyV 81 (122)
+.|++=..-..++. ..-..+|||.|-.... .|.+...--... ...|++++...+=--+ .-+......+++
T Consensus 88 ~~~~~f~~i~~kl~~~~~~~~r~IPiRiy~~~~--~~~iQ~~i~~~~~~g~~~TL~d~L~~~lp~~f~s~~~~~~~~~ii 165 (197)
T PF04106_consen 88 HDFDQFWSINSKLMPPDPSKFRHIPIRIYLPGS--VPVIQPPIPPIKEDGQPQTLGDALSELLPELFPSSDEPELARVII 165 (197)
T ss_dssp T-HHHHHHHHHHHS----SS-SB--EEEEE-SS----EE----B----TT---BTGGGHHHHHTTT--T------EEEEE
T ss_pred hCHHHHHHHHHHHHhhcCCCcceeEEEEEeCCC--cceEecccccccCCCCcCcHHHHHHHhChhhcccccCccccEEEE
Confidence 33443334445555 5666899999977643 233332211111 2346666555442221 112344567788
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 82 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 82 n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
++.-++.|+.|..||+.+.-.||||||.-+
T Consensus 166 hGI~ipldtpl~~l~~~l~~~D~FLhivv~ 195 (197)
T PF04106_consen 166 HGIEIPLDTPLQWLYENLSYPDGFLHIVVR 195 (197)
T ss_dssp TTEEE-TTSBHHHHHHHH--TTS-EEEEEE
T ss_pred eCeeCCCCCcHHHHHHHccCCCCeEEEEEE
Confidence 888788899999999999999999999753
No 9
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=95.37 E-value=0.16 Score=41.54 Aligned_cols=87 Identities=16% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCcccEEEEccCCCCCCCCccc-----------------eEEecCCCchHHHHHHHHHhh--------------cCCCC
Q 033317 26 YPDRIPVIVEKAERSDIPNIDKK-----------------KYLVPADLTVGQFVYVIRKRI--------------KLSAE 74 (122)
Q Consensus 26 yP~~ipVIvE~~~~~~~p~L~k~-----------------Kflv~~~~tv~~~~~~lRk~L--------------~l~~~ 74 (122)
-+.||+-++.++.++..|.+... |.-.++-+.|.-+..+|-.|+ .+.++
T Consensus 211 e~~Ki~F~L~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~ 290 (331)
T PF11816_consen 211 EPPKISFVLQPWDGSLPPNLKPDGKSQKKIKLPPLSEGNSRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPE 290 (331)
T ss_pred CCCeeEEEEeecCCCCccccCCCccccccccccccccccceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCC
Confidence 34677788888875555555554 888899999999999999999 45778
Q ss_pred ceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 75 KAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 75 ~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
+.|=|+||+.+..+++||+.+=..+=-..|-|.+.|..
T Consensus 291 e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~ 328 (331)
T PF11816_consen 291 EWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRR 328 (331)
T ss_pred ceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEe
Confidence 99999999998888999999988854468899999964
No 10
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=91.84 E-value=0.41 Score=29.86 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|..+.+++.++...+++.++++.+++-|+.++.-..++.|++++
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~ 60 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDL 60 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHH
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHC
Confidence 5678999999999999999999999995667777777555555677664
No 11
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=91.02 E-value=1.9 Score=32.32 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=57.0
Q ss_pred ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEc-C-CC-CCccchHHHHHhhhcCCCCeE
Q 033317 30 IPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-N-VL-PPTGAIMSAIYEEKKDEDGFL 106 (122)
Q Consensus 30 ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn-~-~l-p~~~~~~~~lY~~~kd~DGfL 106 (122)
|-|+|...++-.+| ....+-+|.+.|++++...|..++.......++|+++ | .+ +..+..++.+...-.+. +|+
T Consensus 1 i~Vlvss~~g~~lp--~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~-~~~ 77 (162)
T PF13019_consen 1 INVLVSSFDGLTLP--PTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDS-DFI 77 (162)
T ss_pred CeEEEecCCCCCCC--CeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCC-Cce
Confidence 34667555432332 3456779999999999999999999998887888886 4 45 57777889888877543 676
Q ss_pred EEEec
Q 033317 107 YVTYS 111 (122)
Q Consensus 107 yi~Ys 111 (122)
.+...
T Consensus 78 ~l~l~ 82 (162)
T PF13019_consen 78 TLRLS 82 (162)
T ss_pred EEEEE
Confidence 66543
No 12
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.77 E-value=2.6 Score=28.12 Aligned_cols=56 Identities=20% Similarity=0.286 Sum_probs=42.7
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEEEc----CC-CCCccchHHHHHhhhcCCCCeEEEE
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD----NV-LPPTGAIMSAIYEEKKDEDGFLYVT 109 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn----~~-lp~~~~~~~~lY~~~kd~DGfLyi~ 109 (122)
-||.+.+++++...|++||++.+ +.+.|.-- +. .|-.|+.|...+.+=+ ||-|-+-
T Consensus 16 rvp~~~~y~~L~~ki~~kLkl~~-e~i~LsYkde~s~~~v~l~d~dle~aws~~~--~~~lTLw 76 (80)
T cd06406 16 QVARGLSYATLLQKISSKLELPA-EHITLSYKSEASGEDVILSDTNMEDVWSQAK--DGCLTLW 76 (80)
T ss_pred EcCCCCCHHHHHHHHHHHhCCCc-hhcEEEeccCCCCCccCcChHHHHHHHHhhc--CCeEEEE
Confidence 58999999999999999999984 45666543 22 3557888999998876 6766543
No 13
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=87.24 E-value=1.4 Score=36.44 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCCCCccceE-EecCCCchHHHHHHHHHhhc-CCCCceEEEEEcCCCCCccchHHHHHhhhcC--CCCeEEEEecCCc
Q 033317 41 DIPNIDKKKY-LVPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD--EDGFLYVTYSGEN 114 (122)
Q Consensus 41 ~~p~L~k~Kf-lv~~~~tv~~~~~~lRk~L~-l~~~~slflyVn~~lp~~~~~~~~lY~~~kd--~DGfLyi~Ys~~~ 114 (122)
.++.|. .+| .++...|+.++..++++++. ++..-.+=+.+|+-+..-+.||.++.-.+.. .||-|-+.|...+
T Consensus 159 ~~k~l~-~~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~p 235 (331)
T KOG2660|consen 159 TLKDLV-RRFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVKP 235 (331)
T ss_pred cccccc-cceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEecccc
Confidence 455555 466 48999999999999999998 7766667788888888999999999888876 4999999998443
No 14
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=11 Score=30.46 Aligned_cols=92 Identities=14% Similarity=0.300 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhh----CCCcccEEEEcc--C-------CCCCCCCccceEEecCCCchHHHHHHHHHhhc--CC---
Q 033317 11 DLEKRRAEAARIREK----YPDRIPVIVEKA--E-------RSDIPNIDKKKYLVPADLTVGQFVYVIRKRIK--LS--- 72 (122)
Q Consensus 11 ~~e~R~~e~~~i~~k----yP~~ipVIvE~~--~-------~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~--l~--- 72 (122)
.|++=..-+.++..- .+-+||+.+... + +...|. .-.++-..+.+-.++.+++. ++
T Consensus 161 ~fd~F~~Is~Kl~~s~e~n~~r~IPL~iy~sq~~t~r~f~~~~~~P~------~~~~d~~~stlge~l~d~~~~s~~s~d 234 (278)
T KOG2976|consen 161 NFDDFWEISNKLMESVEDNRSRHIPLRIYTSQVKTARDFRTSLTFPC------ISQPDGSLSTLGEFLKDRLPDSLDSKD 234 (278)
T ss_pred cHHHHHHHHHHHHhhccccccccceeEeeccccccccchhhccccce------eecCchhhhhhhHHHHhhcccccCccc
Confidence 344444445555554 788999999844 1 122331 11234444455556667764 12
Q ss_pred ---CCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 73 ---AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 73 ---~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
..+. +.+.+--+...+.+..+|......||||||+.
T Consensus 235 ~~~~~~~--viihGIei~l~tpL~~l~~~L~ypD~FLHI~l 273 (278)
T KOG2976|consen 235 DINGNDP--VIIHGIEIPLHTPLYWLYSNLSYPDGFLHIVL 273 (278)
T ss_pred cccccCc--eEEecccccccchHHHHHhhccCCCcceEEEE
Confidence 1222 44445457888899999999999999999975
No 15
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=84.94 E-value=3.3 Score=24.39 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=34.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
...+-|+.+.|++++...|.++.+++++. +=|+.++.....+.++++
T Consensus 11 ~~~~~v~~~~tv~~lk~~i~~~~~~~~~~-~~L~~~g~~L~d~~tL~~ 57 (64)
T smart00213 11 TITLEVKPSDTVSELKEKIAELTGIPVEQ-QRLIYKGKVLEDDRTLAD 57 (64)
T ss_pred eEEEEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEECCCCCCHHH
Confidence 34567999999999999999999997663 445566655555666654
No 16
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=83.32 E-value=5.5 Score=21.69 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.7
Q ss_pred CccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC
Q 033317 45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (122)
Q Consensus 45 L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l 85 (122)
.....+.++.+.|++++...|..+.+.. .+...|++|+..
T Consensus 7 ~~~~~~~~~~~~tv~~l~~~i~~~~~~~-~~~~~l~~~~~~ 46 (69)
T cd00196 7 GKTVELLVPSGTTVADLKEKLAKKLGLP-PEQQRLLVNGKI 46 (69)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHCcC-hHHeEEEECCeE
Confidence 3456678889999999999999998854 445667777654
No 17
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=78.14 E-value=13 Score=25.30 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=45.4
Q ss_pred CCCCCccceEEecCCCchHHHHHHHHHhh-cCCCCceEEEEEcCCCCCccchHHHHHhhh---------cCCCC----eE
Q 033317 41 DIPNIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVLPPTGAIMSAIYEEK---------KDEDG----FL 106 (122)
Q Consensus 41 ~~p~L~k~Kflv~~~~tv~~~~~~lRk~L-~l~~~~slflyVn~~lp~~~~~~~~lY~~~---------kd~DG----fL 106 (122)
.+|+|.=. +--+.+.|+.++...||.++ .-.++..|=|.-++.+.+.++.++..-... +..++ -.
T Consensus 10 sipDl~L~-I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l~~~~~~~~~~~gk~~~~~~~~~~ 88 (97)
T PF10302_consen 10 SIPDLPLD-IPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSELKLPTARSSKGKGKAPERQEAPRI 88 (97)
T ss_pred CCCCceee-cCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhhccccccCccccCcCccCCCCCeE
Confidence 57764311 01448899999999999999 555566775555766655555555544444 22333 78
Q ss_pred EEEecC
Q 033317 107 YVTYSG 112 (122)
Q Consensus 107 yi~Ys~ 112 (122)
||+++.
T Consensus 89 yIhCsI 94 (97)
T PF10302_consen 89 YIHCSI 94 (97)
T ss_pred EEEEec
Confidence 888764
No 18
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=77.86 E-value=6.8 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=35.3
Q ss_pred cceEEecC-----CCchHHHHHHHHHhhcCCCCceEEE-EEcC--C-C-CCccchHHHHHhh
Q 033317 47 KKKYLVPA-----DLTVGQFVYVIRKRIKLSAEKAIFI-FVDN--V-L-PPTGAIMSAIYEE 98 (122)
Q Consensus 47 k~Kflv~~-----~~tv~~~~~~lRk~L~l~~~~slfl-yVn~--~-l-p~~~~~~~~lY~~ 98 (122)
...|.+|. +.++.++...|++++++.+...+-| |-+. . + ...|..+.+.-+.
T Consensus 11 ~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~ 72 (91)
T cd06398 11 LRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQY 72 (91)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHH
Confidence 45677775 7999999999999999987444433 4442 2 2 3555556555555
No 19
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=76.02 E-value=2.8 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=36.9
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
.+-|+.+.||+++...|....++++++ +-|+.++.....+.+|+++
T Consensus 9 ~~~v~~~~tV~~lK~~i~~~~~~~~~~-~~L~~~G~~L~d~~tL~~~ 54 (69)
T PF00240_consen 9 TLEVDPDDTVADLKQKIAEETGIPPEQ-QRLIYNGKELDDDKTLSDY 54 (69)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSTGGG-EEEEETTEEESTTSBTGGG
T ss_pred EEEECCCCCHHHhhhhccccccccccc-ceeeeeeecccCcCcHHHc
Confidence 456999999999999999999988775 4555577655888888765
No 20
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=75.05 E-value=13 Score=24.46 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=43.0
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcC
Q 033317 43 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKD 101 (122)
Q Consensus 43 p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd 101 (122)
|.+.-+.+-||++..+..++.+--...++++..|.-+ -|+-. -.+.++-|+++-+|+.
T Consensus 13 p~~p~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiI-tndG~GInP~QTag~vflKhGs 71 (76)
T PF03671_consen 13 PKLPYKVISVPEEAPFTAVLKFAAEEFKVPPATSAII-TNDGVGINPQQTAGNVFLKHGS 71 (76)
T ss_dssp STS-EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEE-ESSS-EE-TTSBHHHHHHHT-S
T ss_pred CCCcceEEecCCCCchHHHHHHHHHHcCCCCceEEEE-ecCCcccccchhhhhhHhhcCc
Confidence 5566678899999999999999999999999888332 33333 6778999999999964
No 21
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=74.89 E-value=6.3 Score=25.17 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=36.7
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEE--EcCCCCCccchHHHH
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSAI 95 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slfly--Vn~~lp~~~~~~~~l 95 (122)
=|+.+.|+++|...|..+.+++++.-=.+| +.+..+..+.+++++
T Consensus 15 ~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~ 61 (74)
T cd01813 15 TTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISAL 61 (74)
T ss_pred EECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHc
Confidence 488999999999999999999887655666 456677778888876
No 22
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=74.14 E-value=11 Score=24.57 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=43.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+.+|.|-|.-. .-+...|.|..+.+++.++..+..+.++++++--|+|- +.-...+.|+.++
T Consensus 9 ~~~i~I~v~~~------~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~-G~~L~~~~T~~~l 70 (87)
T cd01763 9 SEHINLKVKGQ------DGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFD-GQRIRDNQTPDDL 70 (87)
T ss_pred CCeEEEEEECC------CCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEEC-CeECCCCCCHHHc
Confidence 35556666222 12345789999999999999999999999876666664 4444445677766
No 23
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=73.83 E-value=4.8 Score=30.57 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=37.8
Q ss_pred CCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEecCCcccC
Q 033317 55 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTYSGENTFG 117 (122)
Q Consensus 55 ~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DG-fLyi~Ys~~~~fG 117 (122)
.++++.++.-|++.++++..+ .-..++++|... ..|| |++| +.+.||
T Consensus 30 ~~~F~dii~EI~~~~~~s~~e------------i~~~i~~FYTdl-n~DgrFi~L---Gdn~Wg 77 (175)
T COG3343 30 PFNFSDIINEIQKLLGVSKEE------------IRSRIGQFYTDL-NIDGRFISL---GDNKWG 77 (175)
T ss_pred CccHHHHHHHHHHHhCcCHHH------------HHHHHHHHHHHh-ccCCceeec---cccccc
Confidence 688999999999999888554 246799999999 5666 7665 678888
No 24
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=70.68 E-value=15 Score=22.47 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=41.0
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DG-fLyi~Ys 111 (122)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++. .-.|| .|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~-~~g~~L~d~~tl~~~----~i~~g~~i~l~~~ 72 (76)
T cd01806 14 EIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQMNDDKTAADY----KLEGGSVLHLVLA 72 (76)
T ss_pred EEEECCCCCHHHHHHHHhHhhCCChhhEEEE-ECCeEccCCCCHHHc----CCCCCCEEEEEEE
Confidence 3568999999999999999999988754344 566555566777663 33344 7777654
No 25
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=70.20 E-value=19 Score=21.21 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=39.0
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
.+-++.+.|++++...|.++.+++++.- =|..++.....+.++++ +.- ++..+|+..
T Consensus 11 ~~~~~~~~ti~~lK~~i~~~~~~~~~~~-~l~~~g~~l~d~~~l~~----~~v~~~~~i~v~~ 68 (69)
T cd01769 11 ELEVSPDDTVAELKAKIAAKEGVPPEQQ-RLIYAGKILKDDKTLSD----YGIQDGSTLHLVL 68 (69)
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCcCCCCcCCHHH----CCCCCCCEEEEEE
Confidence 4678889999999999999999877643 33556655566667755 222 344566643
No 26
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=69.33 E-value=29 Score=22.78 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=42.1
Q ss_pred eEEe--cCCCchHHHHHHHHHhhc-CCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLV--PADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv--~~~~tv~~~~~~lRk~L~-l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
-|-| +.+.||+++...|....+ ..+.+..=|.-.+++...+.+|++..+.-+ .+--+++.|+
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~-~~~tiHLV~~ 79 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQD-EYHMVHLVCA 79 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhccc-CCceEEEEeC
Confidence 4666 789999999999998774 232233444445556688899999987753 3345666553
No 27
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=69.08 E-value=11 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=40.4
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEE
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVT 109 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~ 109 (122)
.+-|.++.|++++...|-.+.++++++ .-|+.++.....+.++++ |.-- ++-.|++.
T Consensus 12 ~~~v~~~~tV~~lK~~i~~~~gi~~~~-q~Li~~G~~L~d~~~l~~-~~i~--~~stl~l~ 68 (70)
T cd01798 12 PVEVDPDTDIKQLKEVVAKRQGVPPDQ-LRVIFAGKELRNTTTIQE-CDLG--QQSILHAV 68 (70)
T ss_pred EEEECCCChHHHHHHHHHHHHCCCHHH-eEEEECCeECCCCCcHHH-cCCC--CCCEEEEE
Confidence 345889999999999999999997654 566667765577788887 4332 23355543
No 28
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=66.77 E-value=12 Score=23.37 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=34.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
.+-|+.+.||+++...|..+-++++++ .-|+.++.....+.++++
T Consensus 14 ~l~v~~~~tV~~lK~~i~~~~gi~~~~-q~L~~~G~~L~d~~~L~~ 58 (74)
T cd01807 14 SLQVSEKESVSTLKKLVSEHLNVPEEQ-QRLLFKGKALADDKRLSD 58 (74)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHH-eEEEECCEECCCCCCHHH
Confidence 345889999999999999999998754 455567765566677754
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=65.22 E-value=15 Score=22.82 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=38.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcC--CCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKL--SAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l--~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DG-fLyi~Y 110 (122)
.+=|+.+.||+++...|..+.++ .+++ .-|..++.....+.++++ | +-.|| .|++.-
T Consensus 14 ~l~v~~~~TV~~lK~~i~~~~~i~~~~~~-q~L~~~G~~L~d~~~L~~-~---~i~~~~~i~~~~ 73 (77)
T cd01805 14 PIEVDPDDTVAELKEKIEEEKGCDYPPEQ-QKLIYSGKILKDDTTLEE-Y---KIDEKDFVVVMV 73 (77)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCCCChhH-eEEEECCEEccCCCCHHH-c---CCCCCCEEEEEE
Confidence 45588999999999999999888 5544 444556665556677766 3 33333 566543
No 30
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=63.56 E-value=32 Score=21.44 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=41.6
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
+-|..+.||+++...|..+-++++++ .-|+.++.....+.++++ |.-. ++-.|++.-.
T Consensus 13 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~D~~tL~~-~~i~--~~~tl~l~~~ 70 (74)
T cd01810 13 YEVQLTQTVATLKQQVSQRERVQADQ-FWLSFEGRPMEDEHPLGE-YGLK--PGCTVFMNLR 70 (74)
T ss_pred EEECCcChHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCCHHH-cCCC--CCCEEEEEEE
Confidence 56889999999999999988886654 455567766667788887 4332 3447777643
No 31
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=63.28 E-value=11 Score=29.97 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=30.2
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCC
Q 033317 4 SYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAER 39 (122)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~ 39 (122)
..+++..|+|+|..-++.+++++| ..||+|-.-.+
T Consensus 158 ~~i~qh~sledR~~aA~~l~~~~~-~~pi~vD~mdN 192 (237)
T PF00837_consen 158 YEIPQHRSLEDRLRAAKLLKEEFP-QCPIVVDTMDN 192 (237)
T ss_pred eeecCCCCHHHHHHHHHHHHhhCC-CCCEEEEccCC
Confidence 468899999999999999999997 68999977543
No 32
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=62.25 E-value=9.7 Score=25.76 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=31.1
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEEEc-CC---CCCccchHHH--HHh
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD-NV---LPPTGAIMSA--IYE 97 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn-~~---lp~~~~~~~~--lY~ 97 (122)
..++..||+.+...+|+.+.++.+-.|+-+-+ ++ |..++.|+.+ ||+
T Consensus 19 ~FSk~DTI~~v~~~~rklf~i~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~ 71 (88)
T PF14836_consen 19 QFSKTDTIGFVEKEMRKLFNIQEETRLWNKYSENSYELLNNPEITVEDAGLYD 71 (88)
T ss_dssp EE-TTSBHHHHHHHHHHHCT-TS-EEEEEECTTTCEEEE--TTSBTTTTT--T
T ss_pred hccccChHHHHHHHHHHHhCCCccceehhccCCcchhhhCCCCccHHHccCcC
Confidence 57899999999999999999977777887665 33 4466666655 554
No 33
>PF12752 SUZ: SUZ domain; InterPro: IPR024771 The SUZ domain is a conserved RNA-binding domain found in eukaryotes and enriched in positively charged amino acids. It was first characterised in the Caenorhabditis elegans protein SZY-20 where it has been shown to bind RNA and allow their localization to the centrosome [].
Probab=61.95 E-value=9.1 Score=23.58 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.3
Q ss_pred cccCCHHHHHHHHHHHHhh
Q 033317 7 KQEHDLEKRRAEAARIREK 25 (122)
Q Consensus 7 k~~~~~e~R~~e~~~i~~k 25 (122)
....|+|+|.++++..|++
T Consensus 35 ~~~kSlEERE~eY~~AR~R 53 (59)
T PF12752_consen 35 RPSKSLEEREAEYAEARAR 53 (59)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4578999999999999864
No 34
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=61.87 E-value=36 Score=21.14 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=47.0
Q ss_pred cceEEec-CCCchHHHHHHHHHhhcCCCCceEEEEEcC--C-C-CCccchHHHHHhhhcC-CCCeEEEE
Q 033317 47 KKKYLVP-ADLTVGQFVYVIRKRIKLSAEKAIFIFVDN--V-L-PPTGAIMSAIYEEKKD-EDGFLYVT 109 (122)
Q Consensus 47 k~Kflv~-~~~tv~~~~~~lRk~L~l~~~~slflyVn~--~-l-p~~~~~~~~lY~~~kd-~DGfLyi~ 109 (122)
...|.++ .+.++.+|...|++++++....-.+-|.++ - . .+.|+.+.+.++.++. .++.|.|.
T Consensus 11 ~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~ 79 (81)
T cd05992 11 IRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLF 79 (81)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEE
Confidence 4567788 999999999999999998764445556653 2 2 4777889998888864 46666554
No 35
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=61.49 E-value=44 Score=22.21 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=47.1
Q ss_pred ccceEEecC--CCchHHHHHHHHHhhcCCCCceEEE-EEcC----CCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 46 DKKKYLVPA--DLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 46 ~k~Kflv~~--~~tv~~~~~~lRk~L~l~~~~slfl-yVn~----~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
+...|.++. +.++.++...++++.+++ ++-| |+++ .+.+.+..+.+.++.+......|-|+-
T Consensus 10 d~~rf~~~~~~~~~~~~L~~ev~~rf~l~---~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v 78 (81)
T cd06396 10 ESQSFLVSDSENTTWASVEAMVKVSFGLN---DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNV 78 (81)
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHhCCC---cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEE
Confidence 356789988 779999999999999999 4333 6653 356778889888888866666666654
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=59.62 E-value=29 Score=20.92 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=33.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
.+-++.+.|++++...|.++.+++++.- =|..++.....+.++++
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gi~~~~q-~L~~~g~~L~d~~~L~~ 58 (72)
T cd01809 14 TFTVEEEITVLDLKEKIAEEVGIPVEQQ-RLIYSGRVLKDDETLSE 58 (72)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCEECCCcCcHHH
Confidence 4678899999999999999999876643 33346666556667765
No 37
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=59.55 E-value=32 Score=22.00 Aligned_cols=57 Identities=11% Similarity=0.043 Sum_probs=37.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEE
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYV 108 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi 108 (122)
.+-|+.+.||+++...|-.+.+++++. .-||-+..+-..+.++++ |.-. +++..||+
T Consensus 16 ~l~v~~~~TV~~lK~kI~~~~gip~~~-QrL~~G~~L~dD~~tL~~-ygi~-~~g~~~~l 72 (75)
T cd01799 16 WLTVRPDMTVAQLKDKVFLDYGFPPAV-QRWVIGQRLARDQETLYS-HGIR-TNGDSAFL 72 (75)
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHH-EEEEcCCeeCCCcCCHHH-cCCC-CCCCEEEE
Confidence 466899999999999999999998753 233444455445577765 3322 23345554
No 38
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=59.39 E-value=27 Score=21.37 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|.++.++++++ .=|+.++.....+.++++ |.-. ++.-+++...
T Consensus 14 ~~~v~~~~tV~~lK~~i~~~~g~~~~~-q~L~~~g~~L~d~~~L~~-~~i~--~~~~i~l~~~ 72 (76)
T cd01803 14 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSD-YNIQ--KESTLHLVLR 72 (76)
T ss_pred EEEECCcCcHHHHHHHHHHHhCCCHHH-eEEEECCEECCCCCcHHH-cCCC--CCCEEEEEEE
Confidence 467899999999999999999987654 334456655556667766 3221 2346666554
No 39
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=58.68 E-value=18 Score=22.60 Aligned_cols=56 Identities=13% Similarity=0.197 Sum_probs=35.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCcc-chHHHHHhhhcCCCCeEEE
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKDEDGFLYV 108 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~-~~~~~lY~~~kd~DGfLyi 108 (122)
..-|+++.||+++...|..+-++++.+- -|+.++.....+ .++.+ |. -+ ++.+|++
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~gip~~~q-~Li~~Gk~L~D~~~~L~~-~g-i~-~~~~l~l 69 (71)
T cd01796 13 SLDVDPDLELENFKALCEAESGIPASQQ-QLIYNGRELVDNKRLLAL-YG-VK-DGDLVVL 69 (71)
T ss_pred EEEECCcCCHHHHHHHHHHHhCCCHHHe-EEEECCeEccCCcccHHH-cC-CC-CCCEEEE
Confidence 3568899999999999999999987653 444455433333 33433 32 21 3446665
No 40
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=58.33 E-value=44 Score=21.04 Aligned_cols=64 Identities=8% Similarity=0.047 Sum_probs=44.3
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCC-ceEEEE--EcC----CCCCccchHHHHHhhhcCC--CCeEEEE
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIF--VDN----VLPPTGAIMSAIYEEKKDE--DGFLYVT 109 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~-~slfly--Vn~----~lp~~~~~~~~lY~~~kd~--DGfLyi~ 109 (122)
.-+.+.|+.+.|+.+++..+-+++++..+ +...|+ ... ....+++..-.+....... ++.+++.
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~~~~~~~f~lr 89 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPKDSQNSRFVLR 89 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSSGTTTEEEEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCccccCceEEEEE
Confidence 46778999999999999999999999333 333342 222 1346677777777777553 6666664
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=57.06 E-value=44 Score=20.57 Aligned_cols=58 Identities=10% Similarity=0.169 Sum_probs=38.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
.+-|..+.||+++...|..+.++++. .+-|..++.....+.++++. . - .++..|+|.-
T Consensus 13 ~l~v~~~~TV~~lK~~I~~~~~i~~~-~~~Li~~Gk~L~d~~tL~~~-~-i-~~~stl~l~~ 70 (71)
T cd01808 13 EIEIAEDASVKDFKEAVSKKFKANQE-QLVLIFAGKILKDTDTLTQH-N-I-KDGLTVHLVI 70 (71)
T ss_pred EEEECCCChHHHHHHHHHHHhCCCHH-HEEEEECCeEcCCCCcHHHc-C-C-CCCCEEEEEE
Confidence 46688999999999999988887554 44454466555556677553 1 2 2455777753
No 42
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=56.98 E-value=25 Score=21.27 Aligned_cols=45 Identities=4% Similarity=0.074 Sum_probs=31.4
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
.+-|+.+.|++++...|...-+++++. .=|+.++.....+.++++
T Consensus 13 ~i~v~~~~tv~~lK~~i~~~~gi~~~~-q~L~~~g~~l~d~~~L~~ 57 (71)
T cd01812 13 DLSISSQATFGDLKKMLAPVTGVEPRD-QKLIFKGKERDDAETLDM 57 (71)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCChHH-eEEeeCCcccCccCcHHH
Confidence 345889999999999999998987753 334455544344555544
No 43
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=54.67 E-value=34 Score=21.47 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=34.4
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
.+-|+++.||+++...|..+-++++.+- =|+.++.....+.++++
T Consensus 12 ~l~v~~~~TV~~lK~~I~~~~gi~~~~q-~Li~~G~~L~D~~~l~~ 56 (70)
T cd01794 12 KLSVSSKDTVGQLKKQLQAAEGVDPCCQ-RWFFSGKLLTDKTRLQE 56 (70)
T ss_pred EEEECCcChHHHHHHHHHHHhCCCHHHe-EEEECCeECCCCCCHHH
Confidence 4568899999999999999988887643 33455666667788877
No 44
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=54.55 E-value=17 Score=28.52 Aligned_cols=60 Identities=18% Similarity=0.386 Sum_probs=36.7
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEc---CCC--CCccchHHHHHhhhcCCCC-eEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NVL--PPTGAIMSAIYEEKKDEDG-FLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn---~~l--p~~~~~~~~lY~~~kd~DG-fLyi~Ys~ 112 (122)
.+.|+.+.+++++...|+++++++++..|-+|-. +.+ ..++.++.+ .+- .|| .|+.+-..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~--~el--~~GdIi~fQ~~~ 153 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEK--AEL--QDGDIICFQRAP 153 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHH--TT----TTEEEEEEE--
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhh--ccc--CCCCEEEEEecc
Confidence 5689999999999999999999999999988875 222 366666766 222 344 66655543
No 45
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=54.23 E-value=52 Score=20.55 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=45.9
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC---CC-CCccchHHHHHhhhcCC-CCeEEE
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN---VL-PPTGAIMSAIYEEKKDE-DGFLYV 108 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~---~l-p~~~~~~~~lY~~~kd~-DGfLyi 108 (122)
...|.+|.+.|+.+|...|.+++++..+.-..-|.++ .+ .+.|+.|....+.++.. .+.|-|
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l 78 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRL 78 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEE
Confidence 4567899999999999999999998765555567763 23 57788888888888643 344443
No 46
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=54.01 E-value=30 Score=22.69 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=38.5
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEE-EEcC----CCCCccchHHHHHhhh
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN----VLPPTGAIMSAIYEEK 99 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slfl-yVn~----~lp~~~~~~~~lY~~~ 99 (122)
.-.|.+|.+.++.++...|++++++.....+-| |.++ ...+.|+-+.+..+-+
T Consensus 11 ~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~ 68 (82)
T cd06407 11 KIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVY 68 (82)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHH
Confidence 457889999999999999999999976445544 6653 2356777776644444
No 47
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=53.95 E-value=32 Score=23.24 Aligned_cols=37 Identities=24% Similarity=0.468 Sum_probs=31.2
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCC--CCceEEEEEcCC
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLS--AEKAIFIFVDNV 84 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~--~~~slflyVn~~ 84 (122)
+...|+.+.|..++-...-.+..+. .+-+||+|+++.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~ 54 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEET 54 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCc
Confidence 3467999999999999999999875 456899999973
No 48
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=52.89 E-value=54 Score=20.36 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=34.2
Q ss_pred CCccceEEecCCCchHHHHHHHHHhh-cCCCCceEEEEEcCCC
Q 033317 44 NIDKKKYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVDNVL 85 (122)
Q Consensus 44 ~L~k~Kflv~~~~tv~~~~~~lRk~L-~l~~~~slflyVn~~l 85 (122)
.+...-+.||.+.|..++...+.+-| ........=++||+..
T Consensus 14 ~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~ 56 (65)
T PF08154_consen 14 EVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEE 56 (65)
T ss_pred cCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEE
Confidence 45567899999999999999999999 6666666667888753
No 49
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=50.47 E-value=42 Score=21.32 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=37.1
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
-|+++.||+++...|..+-+++++.-=.+|. +.....+.++++ |. -+ ++--++|-|
T Consensus 17 ~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~-Gk~L~D~~tL~~-yg-i~-~~stv~l~~ 72 (73)
T cd01791 17 KCNPDDTIGDLKKLIAAQTGTRPEKIVLKKW-YTIFKDHISLGD-YE-IH-DGMNLELYY 72 (73)
T ss_pred EeCCCCcHHHHHHHHHHHhCCChHHEEEEeC-CcCCCCCCCHHH-cC-CC-CCCEEEEEe
Confidence 5889999999999998887888765444554 555555667776 32 22 233555554
No 50
>PTZ00044 ubiquitin; Provisional
Probab=48.65 E-value=51 Score=20.30 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=32.6
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
.+-|+.+.|++++...|..+.++++++--.+ .++.....+.++++
T Consensus 14 ~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~-~~g~~L~d~~~l~~ 58 (76)
T PTZ00044 14 SFNFEPDNTVQQVKMALQEKEGIDVKQIRLI-YSGKQMSDDLKLSD 58 (76)
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCEEccCCCcHHH
Confidence 4678999999999999999999987643333 45544456666643
No 51
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=47.64 E-value=60 Score=20.13 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=41.6
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEE
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVT 109 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~ 109 (122)
...+-|.++.||+++...|..+-++++++ .-|+.++.....+.++++ |.-- ++--|++.
T Consensus 10 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~Li~~Gk~L~D~~tL~~-~~i~--~~~tl~l~ 68 (74)
T cd01793 10 THTLEVTGQETVSDIKAHVAGLEGIDVED-QVLLLAGVPLEDDATLGQ-CGVE--ELCTLEVA 68 (74)
T ss_pred EEEEEECCcCcHHHHHHHHHhhhCCCHHH-EEEEECCeECCCCCCHHH-cCCC--CCCEEEEE
Confidence 44567899999999999999998887665 345556666667788877 4432 23355554
No 52
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=45.18 E-value=18 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=29.1
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCC--ceEEEE-E-cCC---CCCccchHHHH
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIF-V-DNV---LPPTGAIMSAI 95 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~--~slfly-V-n~~---lp~~~~~~~~l 95 (122)
+.-.++||++-||+++...++++++++.+ ..|-++ | |+. ..+.+..+++|
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 45678999999999999999999998654 334332 3 343 35788888887
No 53
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=44.57 E-value=77 Score=19.73 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=42.8
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC---CC-CCccchHHHHHhhhcC
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN---VL-PPTGAIMSAIYEEKKD 101 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~---~l-p~~~~~~~~lY~~~kd 101 (122)
+-++.+.++.+|...|++++++.+..-..-|.+. .+ .+.|..+.+..+.++.
T Consensus 16 ~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 16 ISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHh
Confidence 6789999999999999999999867777778863 23 5888888888888865
No 54
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=43.09 E-value=44 Score=21.21 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=37.9
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCc-eEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEK-AIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~-slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
-|+.+.||+++...|-++.+++++. .|.+..++.....+.++++ |. - .++..|++.-+.
T Consensus 18 ~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~-~g-i-~~gs~l~l~~~~ 77 (80)
T cd01792 18 SLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVS-QG-L-GPGSTVLLVVQN 77 (80)
T ss_pred EcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHH-cC-C-CCCCEEEEEEEc
Confidence 4678999999999999888886543 3321224555555667765 22 2 245588877543
No 55
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=42.68 E-value=52 Score=23.05 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.7
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCC
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAE 74 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~ 74 (122)
-.|+.+.|++++...|..++++.+.
T Consensus 19 L~V~~~~TVg~LK~lImQ~f~V~P~ 43 (107)
T cd01795 19 LLVSANQTLKELKIQIMHAFSVAPF 43 (107)
T ss_pred EEeCccccHHHHHHHHHHHhcCCcc
Confidence 4589999999999999999998765
No 56
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=42.56 E-value=53 Score=20.61 Aligned_cols=58 Identities=7% Similarity=0.078 Sum_probs=39.2
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
+-|+.+.||++|...|....+++++. .=|..++.....+.++++. . -+ ++..|+|.-.
T Consensus 12 l~v~~~~TV~~lK~~i~~~~gip~~~-q~L~~~G~~L~d~~tL~~~-~-i~-~g~~l~v~~~ 69 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEETGMPAGK-QKLQYEGIFIKDSNSLAYY-N-LA-NGTIIHLQLK 69 (76)
T ss_pred EEECCCCcHHHHHHHHHHHHCCCHHH-EEEEECCEEcCCCCcHHHc-C-CC-CCCEEEEEEe
Confidence 45889999999999999999987654 3444566555666777542 2 21 3447766554
No 57
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=42.28 E-value=24 Score=24.94 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=33.2
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCC----ceEEEEEcCCCC----CccchHHHHHhhh
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDNVLP----PTGAIMSAIYEEK 99 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~----~slflyVn~~lp----~~~~~~~~lY~~~ 99 (122)
+-+|-|+.++|+++|+..++++.++..+ ..-.||..-..+ ..+++|.+|++.-
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~~rl~~~i~elv~~v 94 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHKERLKMPISELVEEV 94 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHHHHTTSBHHHHHHHH
T ss_pred eeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhHHHhCCcHHHHHHHh
Confidence 4588999999999999999999987743 112233222001 3567899999964
No 58
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=41.08 E-value=92 Score=19.68 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=39.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
..-|+.+.||+++...|.++.++.++. +-|..++.....+ ++++ | .- .++..|||.-+-
T Consensus 15 ~l~v~~~~TV~~LK~~I~~~~~~~~~~-qrL~~~Gk~L~d~-~L~~-~-gi-~~~~~i~l~~~~ 73 (78)
T cd01804 15 DLSVPPDETVEGLKKRISQRLKVPKER-LALLHRETRLSSG-KLQD-L-GL-GDGSKLTLVPTV 73 (78)
T ss_pred EEEECCcCHHHHHHHHHHHHhCCChHH-EEEEECCcCCCCC-cHHH-c-CC-CCCCEEEEEeec
Confidence 356899999999999999888887654 3444445433334 5554 2 22 246688887665
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=38.95 E-value=78 Score=20.64 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=28.0
Q ss_pred ecCCCchHHHHHHHHHhhc--CCCCceEEEEEcCCCCCccchHHH
Q 033317 52 VPADLTVGQFVYVIRKRIK--LSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk~L~--l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
-|.+.||+++...|..+.+ ..+.+..=|.-++.....+.+|++
T Consensus 17 ~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~d 61 (75)
T cd01815 17 SPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDF 61 (75)
T ss_pred CCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHH
Confidence 4789999999999999964 432222233334444566667765
No 60
>PRK02363 DNA-directed RNA polymerase subunit delta; Reviewed
Probab=38.92 E-value=40 Score=24.20 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=37.7
Q ss_pred cCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 53 PADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 53 ~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
...+++.+++..+.+.++++.++ ....++++|..- ..||- ..+..++.||
T Consensus 17 ~~~m~f~dL~~ev~~~~~~s~e~------------~~~~iaq~YtdL-n~DGR--Fi~lG~n~Wg 66 (129)
T PRK02363 17 KEPMSFYDLVNEIQKYLGKSDEE------------IRERIAQFYTDL-NLDGR--FISLGDNKWG 66 (129)
T ss_pred CCcccHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHH-hccCC--eeEcCCCcee
Confidence 35678899999999888865443 136799999998 67883 3467888998
No 61
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=36.82 E-value=96 Score=19.59 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=36.3
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCC-C--CceEEEEEcC--C--CCCccchHHHHHhhh
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLS-A--EKAIFIFVDN--V--LPPTGAIMSAIYEEK 99 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~-~--~~slflyVn~--~--lp~~~~~~~~lY~~~ 99 (122)
.-+...|+++.|.++++..+-++.++. . +=+||-.+++ . ...+++..-++....
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~~~~~~ 73 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQIQLNA 73 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHHHHHhc
Confidence 345678999999999999999999998 2 3344444554 2 344555555554444
No 62
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=36.79 E-value=39 Score=21.38 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=28.0
Q ss_pred eEEecCC-CchHHHHHHHHHhhc-C-CCCceEEEEEcCCCCCcc
Q 033317 49 KYLVPAD-LTVGQFVYVIRKRIK-L-SAEKAIFIFVDNVLPPTG 89 (122)
Q Consensus 49 Kflv~~~-~tv~~~~~~lRk~L~-l-~~~~slflyVn~~lp~~~ 89 (122)
.+-++.+ .|+.++...|..+.. + .....+.+.||+.....+
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~ 62 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDD 62 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCC
Confidence 3446666 899999999988763 2 223567889998654333
No 63
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.49 E-value=73 Score=25.68 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=40.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC-----CCCccchHHHHHhhhc
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-----LPPTGAIMSAIYEEKK 100 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~-----lp~~~~~~~~lY~~~k 100 (122)
.-.|.=|.++..|.++...+|+. +.-.|=+++||. .|..|.+++++=++|+
T Consensus 55 ~~~kLDV~~~~~V~~v~~evr~~----~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~ 110 (289)
T KOG1209|consen 55 KPYKLDVSKPEEVVTVSGEVRAN----PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFK 110 (289)
T ss_pred eeEEeccCChHHHHHHHHHHhhC----CCCceEEEEcCCCCCcccccccCCHHHHHhhhc
Confidence 44566688999999999999985 445677788862 5999999999999995
No 64
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=34.84 E-value=2e+02 Score=23.79 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=46.1
Q ss_pred CcccEEEEcc----CCCCCCCCccceEEecCCCchHHHHHHHHHhhc-CC------CCceEEEEEc--CCCCCccchHHH
Q 033317 28 DRIPVIVEKA----ERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIK-LS------AEKAIFIFVD--NVLPPTGAIMSA 94 (122)
Q Consensus 28 ~~ipVIvE~~----~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~-l~------~~~slflyVn--~~lp~~~~~~~~ 94 (122)
..+=+|+.+. |-+.+|.|.... |.+--+++.+...+..+-. .. ..+.+|..+| +-|+.+..++..
T Consensus 204 ~~~iLVlD~~l~~~PwEsl~~l~~~~--VsR~pSl~~l~~~~~~~~~~~~~~~~~~~~~~~~yvlNP~gDL~~T~~~~~~ 281 (383)
T PF03568_consen 204 EHTILVLDKELQSFPWESLPCLRGQS--VSRMPSLHFLRDLLKRHSNSRSPGYESKDPKRGFYVLNPSGDLKRTEKRFEP 281 (383)
T ss_pred CCEEEEECcccccCchhhCccccCCe--eEecChHHHHHHHHHHhhhhcccccccccccceEEEECCCCCHHHHHHHHHH
Confidence 4444555443 456788998875 6666677777776665322 11 2234777788 358888888888
Q ss_pred HHhhhc
Q 033317 95 IYEEKK 100 (122)
Q Consensus 95 lY~~~k 100 (122)
+++..+
T Consensus 282 ~~~~~~ 287 (383)
T PF03568_consen 282 FFKSWK 287 (383)
T ss_pred HHhccc
Confidence 888876
No 65
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=33.69 E-value=1.4e+02 Score=19.59 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=42.9
Q ss_pred cEEEEccCCCCCCCCccceEEecC--CCchHHHHHHHHH--hhcCC-CCceEEEEEcCCCCCccchHHHHHhhhcCCCCe
Q 033317 31 PVIVEKAERSDIPNIDKKKYLVPA--DLTVGQFVYVIRK--RIKLS-AEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGF 105 (122)
Q Consensus 31 pVIvE~~~~~~~p~L~k~Kflv~~--~~tv~~~~~~lRk--~L~l~-~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGf 105 (122)
|-.|--+.+++.. -...+++|++ -.++.+|...|.+ .|.+. +-..||=.=+..+.+ +.+| +||-
T Consensus 5 ~k~i~~~rNGD~~-~~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~----l~~l------~~g~ 73 (89)
T smart00537 5 PKRIRFYRNGDRF-FKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTS----LDEL------EDGG 73 (89)
T ss_pred ceEEEEEeCCCCC-CCCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECC----HHHh------CcCC
Confidence 3333344555532 2567888886 4589999999999 55444 233333111111222 2222 4788
Q ss_pred EEEEecCCcccC
Q 033317 106 LYVTYSGENTFG 117 (122)
Q Consensus 106 Lyi~Ys~~~~fG 117 (122)
.||+.+.+ .|.
T Consensus 74 ~yVa~g~e-~fk 84 (89)
T smart00537 74 SYVASGTE-AFK 84 (89)
T ss_pred EEEEEcCC-cce
Confidence 99998877 554
No 66
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=33.50 E-value=47 Score=21.59 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=30.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC----CC-CccchHHHHHhhhcCCCCeEEE
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV----LP-PTGAIMSAIYEEKKDEDGFLYV 108 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~----lp-~~~~~~~~lY~~~kd~DGfLyi 108 (122)
...-++.+.|++++...|...++++.. +..||.+.. +. +.+.+++++==+|+| .||+
T Consensus 16 ~Rie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd---mlyL 77 (80)
T PF11543_consen 16 KRIEVSPSSTLSDLKEKISEQLSIPDS-SQSLSKDRNNKEELKSSDSKTLSSLGLKHGD---MLYL 77 (80)
T ss_dssp EEEEE-TTSBHHHHHHHHHHHS---TT-T---BSSGGGGGCSSS-TT-CCCCT---TT----EEE-
T ss_pred EEEEcCCcccHHHHHHHHHHHcCCCCc-ceEEEecCCCCcccccCCcCCHHHcCCCCcc---EEEE
Confidence 345688999999999999999998865 556666631 32 455666655555542 5555
No 67
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=33.17 E-value=19 Score=23.37 Aligned_cols=17 Identities=35% Similarity=0.521 Sum_probs=14.5
Q ss_pred hcCCCCeEEEEecCCcc
Q 033317 99 KKDEDGFLYVTYSGENT 115 (122)
Q Consensus 99 ~kd~DGfLyi~Ys~~~~ 115 (122)
+-|+||-+|+.|+.++.
T Consensus 42 wiDe~G~vYi~~s~eel 58 (76)
T PF06970_consen 42 WIDENGNVYIIFSIEEL 58 (76)
T ss_pred cCCCCCCEEEEeeHHHH
Confidence 56999999999998764
No 68
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=33.05 E-value=1.1e+02 Score=18.86 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=29.7
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
...|-|+++.|+.++...|-++|+|...+-.=|.+
T Consensus 8 ~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 8 TKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred cEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 35688999999999999999999999877665655
No 69
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=32.27 E-value=56 Score=21.64 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=30.7
Q ss_pred EecCCCchHHHHHHHHHh--hcCC------CCceEEEEE-----cCCCCCccchHHHH
Q 033317 51 LVPADLTVGQFVYVIRKR--IKLS------AEKAIFIFV-----DNVLPPTGAIMSAI 95 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~--L~l~------~~~slflyV-----n~~lp~~~~~~~~l 95 (122)
-|+++.|+++|+..|..+ +++. ++.+||+=. ..+-|..+.+|.+|
T Consensus 2 ~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL 59 (84)
T PF08825_consen 2 EVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL 59 (84)
T ss_dssp EESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT
T ss_pred CcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH
Confidence 378999999999999988 6654 345666511 11237788888888
No 70
>PRK06437 hypothetical protein; Provisional
Probab=32.21 E-value=65 Score=20.06 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=26.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIM 92 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~ 92 (122)
.+-+++..|+++++. .|++++ +.+.+.+|+...+.+..+
T Consensus 14 ~~~i~~~~tv~dLL~----~Lgi~~-~~vaV~vNg~iv~~~~~L 52 (67)
T PRK06437 14 TIEIDHELTVNDIIK----DLGLDE-EEYVVIVNGSPVLEDHNV 52 (67)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCceEc
Confidence 345678889998775 457864 567888998764444443
No 71
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=31.31 E-value=82 Score=21.12 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=33.6
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEE-EEc-CCC--CCccchHHHHHhhhc
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVD-NVL--PPTGAIMSAIYEEKK 100 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slfl-yVn-~~l--p~~~~~~~~lY~~~k 100 (122)
-..||.+.++.+|..-||.+++++ +.+-+ |.+ +-. .+.+..|....+..+
T Consensus 15 ~i~v~~~i~f~dL~~kIrdkf~~~--~~~~iKykDEGD~iti~sq~DLd~Ai~~a~ 68 (86)
T cd06408 15 YIMIGPDTGFADFEDKIRDKFGFK--RRLKIKMKDDGDMITMGDQDDLDMAIDTAR 68 (86)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCC--CceEEEEEcCCCCccccCHHHHHHHHHHHH
Confidence 346999999999999999999996 45555 333 222 344455555554444
No 72
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=31.09 E-value=76 Score=20.01 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=25.8
Q ss_pred CCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC
Q 033317 44 NIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 84 (122)
Q Consensus 44 ~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~ 84 (122)
...+.++.|.++.++.++...--++.++++++ -.|.-|++
T Consensus 5 ~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~-~~L~h~~k 44 (65)
T PF11470_consen 5 NFRRFKVKVTPNTTLNQVLEEACKKFGLDPSS-YDLKHNNK 44 (65)
T ss_dssp TS-EEEE---TTSBHHHHHHHHHHHTT--GGG--EEEETTE
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHcCCCccc-eEEEECCE
Confidence 34678899999999999999999999999883 34444443
No 73
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=30.78 E-value=1.2e+02 Score=23.75 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=34.7
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~ 83 (122)
+||-|.+......+-+ ....-++..+|..++...|-++|+++|..--|.-+|+
T Consensus 175 nrv~V~f~~~~~~~~~---~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~~~~ 227 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDP---EFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFTVNP 227 (249)
T ss_dssp HEEEEEEEETTSTT------EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE---T
T ss_pred CeEEEEEEECCCCCCC---CEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEEecc
Confidence 5777777665433322 5566799999999999999999999998766777764
No 74
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=30.65 E-value=49 Score=20.45 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=27.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcC---CCCceEEEEEcCCCCCcc
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKL---SAEKAIFIFVDNVLPPTG 89 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l---~~~~slflyVn~~lp~~~ 89 (122)
.+-+++..|+++++..|..+..- .....+-++||+...+.+
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~ 62 (80)
T cd00754 19 ELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLD 62 (80)
T ss_pred EEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCC
Confidence 44567789999999998876431 123567788998654444
No 75
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=30.51 E-value=67 Score=20.63 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=26.3
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCC-ceEEEE
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIF 80 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~-~slfly 80 (122)
..-.+|.++||+++...|-+..+++++ ..|+++
T Consensus 16 ~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 16 VEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 345799999999999999999999865 566665
No 76
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=30.33 E-value=1.1e+02 Score=20.79 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=39.4
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|..+.||+++...|..+-++++.+- =|+.++.....+.++++ |. - .++.-|++.-.
T Consensus 41 ~leV~~~~TV~~lK~kI~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d-y~-I-~~~stL~l~~~ 99 (103)
T cd01802 41 ELRVSPFETVISVKAKIQRLEGIPVAQQ-HLIWNNMELEDEYCLND-YN-I-SEGCTLKLVLA 99 (103)
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHH-cC-C-CCCCEEEEEEe
Confidence 3568999999999999999988887643 23345555556667755 32 1 13446776543
No 77
>COG3698 Predicted periplasmic protein [Function unknown]
Probab=30.32 E-value=48 Score=26.39 Aligned_cols=40 Identities=13% Similarity=0.383 Sum_probs=30.3
Q ss_pred ceEEecCCC-chHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhh
Q 033317 48 KKYLVPADL-TVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEE 98 (122)
Q Consensus 48 ~Kflv~~~~-tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~ 98 (122)
-.|+|+.+- .+.+|-.+.|.+|+++ ++||| |-|++.+|..
T Consensus 189 ~~FaiS~~~vnFydFA~~fRd~L~cp--naLyL---------DGtIS~ly~p 229 (250)
T COG3698 189 AVFAISQGAVNFYDFATLFRDKLGCP--NALYL---------DGTISSLYMP 229 (250)
T ss_pred EEEEEecCcchhhhHHHHHHHhcCCC--ceeEE---------cCccceeecc
Confidence 469888765 6899999999999887 67887 4455555554
No 78
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=30.29 E-value=91 Score=20.70 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=45.0
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcC
Q 033317 43 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKD 101 (122)
Q Consensus 43 p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd 101 (122)
|.|.-+..-||++.-+.-++.+--...++++..| -+.-|+-. ..+.++-|++|=+|..
T Consensus 13 p~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~Ts-AiiTndGvGINP~qtAGnvflkhgs 71 (82)
T cd01766 13 PKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 71 (82)
T ss_pred CCCcceEEeccccCchHHHHHHHHHhcCCCccce-eEEecCccccChhhcccceeeecCC
Confidence 3444566679999999999999999999998887 44456544 7788889999988863
No 79
>PRK04115 hypothetical protein; Provisional
Probab=29.31 E-value=2.1e+02 Score=20.82 Aligned_cols=55 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCC-----cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCC----CCceEEEE
Q 033317 17 AEAARIREKYPD-----RIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLS----AEKAIFIF 80 (122)
Q Consensus 17 ~e~~~i~~kyP~-----~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~----~~~slfly 80 (122)
.|.+.+.+--|. |+|+|+|..+.. ..-.|.|....-+ .+|++-|+.+ .++.+++|
T Consensus 50 ~ELe~L~~~l~~~~~~lrLPIile~~~~~-----~~g~~~VrG~~ev----k~IskiLg~~~~~~e~~~l~ly 113 (137)
T PRK04115 50 RELEFLKELLDEDACRLRLPIILEIDSSL-----GEGAIVVRGKEEV----KVISKILGKEDIFSEEDILYLY 113 (137)
T ss_pred HHHHHHHHhccchhhheeeeEEEEEecCC-----CceEEEEcCHHHH----HHHHHHhCccccccCCCEEEEe
Confidence 366666665553 589999998532 2346777777633 4455555543 45566665
No 80
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=28.57 E-value=74 Score=25.53 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 10 HDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
-|.|||.+-.+...+.-.+++|||+--..
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~ 86 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATT 86 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEecc
Confidence 46799999999999999999999997754
No 81
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.44 E-value=2.4e+02 Score=23.79 Aligned_cols=60 Identities=15% Similarity=0.136 Sum_probs=42.4
Q ss_pred EEecCCCchHHHHHHHHHhhc---CCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 50 YLVPADLTVGQFVYVIRKRIK---LSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~---l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
+-|..+.||+++...|...-+ +..++ +=|+.++++...+.+|++ |. - .++.+|++--+..
T Consensus 15 IeV~~~~TV~dLK~kI~~~~g~~~ip~~~-QkLIy~GkiL~Dd~tL~d-y~-I-~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 15 IDMEPDETVKELKEKIEAEQGKDAYPVAQ-QKLIYSGKILSDDKTVRE-YK-I-KEKDFVVVMVSKP 77 (378)
T ss_pred EEeCCcChHHHHHHHHHHhhCCCCCChhH-eEEEECCEECCCCCcHHH-cC-C-CCCCEEEEEeccC
Confidence 347899999999999988876 65443 445567777777778877 32 2 2566888877653
No 82
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=28.22 E-value=1.5e+02 Score=21.25 Aligned_cols=56 Identities=27% Similarity=0.500 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCC------cccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCC----CceEEEE
Q 033317 16 RAEAARIREKYPD------RIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSA----EKAIFIF 80 (122)
Q Consensus 16 ~~e~~~i~~kyP~------~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~----~~slfly 80 (122)
+.|.+.+.+.-|. ++|+|+|..+. +..-.|.|.+..-+ .+|++-|++.. +..+++|
T Consensus 46 k~ELe~L~~~lp~~~~~~lrLPIile~~~~-----~~~g~~~V~g~~e~----k~i~~ilg~~~~~~~~~~l~i~ 111 (132)
T PF01886_consen 46 KEELERLAEILPEYEWSKLRLPIILEIDPT-----LGEGSYRVRGKEEV----KAISKILGKEREFEEEDELYIY 111 (132)
T ss_pred HHHHHHHHHhCCHHHHhceeccEEEEEecc-----CCCceEEEeCHHHH----HHHHHHhCCCcccccCCeEEEc
Confidence 4578888888774 58999998642 33456778777633 34555555543 4566654
No 83
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=28.09 E-value=1.8e+02 Score=19.17 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=41.6
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEEEc---C-CC-CCc-cchHHHHHhhhcCCCCeEE
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---N-VL-PPT-GAIMSAIYEEKKDEDGFLY 107 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn---~-~l-p~~-~~~~~~lY~~~kd~DGfLy 107 (122)
.+|....++++...|+++|.+.++..-.=|-. + .+ |-. ++.|.+.+..=++.=.-|.
T Consensus 12 ~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~~~~ltLw 74 (78)
T cd06411 12 RAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVADGPRGLQ 74 (78)
T ss_pred EccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhccCCceEEE
Confidence 47888899999999999999998765444543 2 33 544 8899999988764333333
No 84
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=27.20 E-value=1.3e+02 Score=25.69 Aligned_cols=55 Identities=20% Similarity=0.319 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCC
Q 033317 13 EKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLP 86 (122)
Q Consensus 13 e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp 86 (122)
+-..+..+.++++|...||+++ ..+..|-.+...++++.-+++.+ +++|..+.+|
T Consensus 89 dl~~~qi~~l~~~~~~~iPl~i-----------------MtS~~T~~~T~~~l~kyfg~~~~--v~~F~Q~~~P 143 (420)
T PF01704_consen 89 DLIVEQIEALNKKYGVDIPLYI-----------------MTSFNTHEDTRKFLEKYFGLDVD--VFFFKQSKLP 143 (420)
T ss_dssp HHHHHHHHHHHHHHTTT-EEEE-----------------EEETTTHHHHHHHHHHGCGSSCC--EEEEEE-EEE
T ss_pred HHHHHHHHHHhccccccceEEE-----------------ecCcccHHHHHHHHHHhcCCCcc--eEEEeecCcc
Confidence 5556667778888887888775 44566788889999997677655 6666555433
No 85
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=27.19 E-value=1.6e+02 Score=18.59 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEecCCCchHHHHHHHHHhh---cCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 50 YLVPADLTVGQFVYVIRKRI---KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L---~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
|.-....++.++..-||+.- -+.....+|+.-||.- +-=.||..+||-+..+|.
T Consensus 6 ~vp~~~~~v~d~K~~Lr~y~~~~I~~d~tGfYIvF~~~~--------Ea~rC~~~~~~~~~f~y~ 62 (66)
T PF11767_consen 6 FVPVHGVTVEDFKKRLRKYRWDRIRDDRTGFYIVFNDSK--------EAERCFRAEDGTLFFTYR 62 (66)
T ss_pred cCCCCCccHHHHHHHHhcCCcceEEecCCEEEEEECChH--------HHHHHHHhcCCCEEEEEE
Confidence 34445667888777777542 1445667888777643 777888889999988885
No 86
>PF04441 Pox_VERT_large: Poxvirus early transcription factor (VETF), large subunit ; InterPro: IPR007532 The poxvirus early transcription factor (VETF), in addition to the viral RNA polymerase, is required for efficient transcription of early genes in vitro. VETF is a heterodimeric protein that binds specifically to early gene promoters. The heterodimer is comprised of an 82 kDa (this family) subunit and a 70 kDa subunit.; GO: 0045893 positive regulation of transcription, DNA-dependent
Probab=26.77 E-value=71 Score=28.89 Aligned_cols=55 Identities=24% Similarity=0.410 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHhhcCCCCceE--------EEEEcCCC--CCc-cchHHHHHhhhcCCCCeEEEEecCC
Q 033317 54 ADLTVGQFVYVIRKRIKLSAEKAI--------FIFVDNVL--PPT-GAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~~sl--------flyVn~~l--p~~-~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
=++++.|+.-.|+.-|+++.+--+ |=||+|+. |=. .+..-- =..|||||..|.+-
T Consensus 58 LTlki~QlkGYl~nlL~i~edIIiyShkNNLeYsYvdNtIFnPf~~tQkktL-----Iksd~fLYNiY~~a 123 (700)
T PF04441_consen 58 LTLKISQLKGYLCNLLNINEDIIIYSHKNNLEYSYVDNTIFNPFTHTQKKTL-----IKSDSFLYNIYPDA 123 (700)
T ss_pred EEEEHHHhhhHHHHhhCCCccEEEEEeccCceEEeecCcccCCcchhhhceE-----eccCceEEEecccc
Confidence 357889999999999999865333 44888864 422 221110 12578888888654
No 87
>PF10336 DUF2420: Protein of unknown function (DUF2420); InterPro: IPR018822 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=26.48 E-value=2.2e+02 Score=19.64 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHhhc------CCCCceEEEEEcC--------CCCCccchHHHH---HhhhcCCC---------CeEEE
Q 033317 55 DLTVGQFVYVIRKRIK------LSAEKAIFIFVDN--------VLPPTGAIMSAI---YEEKKDED---------GFLYV 108 (122)
Q Consensus 55 ~~tv~~~~~~lRk~L~------l~~~~slflyVn~--------~lp~~~~~~~~l---Y~~~kd~D---------GfLyi 108 (122)
+.++++|...+|+.+. +..++-|.|-+.. .+-..+-|+.+| |+..+..| +-||+
T Consensus 10 ~~~l~~lf~~lR~~le~~~g~~~~~~~ELvl~i~~L~L~i~EDn~y~~~iTl~di~~lf~~L~~n~~~~~~~~~p~~L~i 89 (113)
T PF10336_consen 10 NEPLEELFAALRQFLENEEGELFSAEDELVLDIPELGLEISEDNVYCSDITLSDIVDLFDILCENDGKNEEPDLPEPLYI 89 (113)
T ss_pred hCCHHHHHHHHHHHHHhccccccCCCCEEEEEeccCCcEEeccccccccCcHHHHHHHHHHHHhccCccccCCCCCcEEE
Confidence 3468999999999984 4556666665542 233455566554 55543222 38999
Q ss_pred EecCCcccC
Q 033317 109 TYSGENTFG 117 (122)
Q Consensus 109 ~Ys~~~~fG 117 (122)
+-+.++.|-
T Consensus 90 ~LstrPRFi 98 (113)
T PF10336_consen 90 TLSTRPRFI 98 (113)
T ss_pred EEecCccHH
Confidence 999998873
No 88
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=25.85 E-value=1.6e+02 Score=20.29 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=28.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCC--ceEEEEEcC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVDN 83 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~--~slflyVn~ 83 (122)
.+.+|-+.||++++..|.++..+.++ -.|++.+++
T Consensus 16 Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~ 52 (97)
T cd01775 16 TLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHD 52 (97)
T ss_pred EEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECC
Confidence 46788999999999999999988764 456777776
No 89
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=25.84 E-value=95 Score=21.42 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=22.3
Q ss_pred ccchHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033317 88 TGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 118 (122)
Q Consensus 88 ~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (122)
.=..|.+||++|+ ++|+..|.+-..+ ||.
T Consensus 38 qy~~L~~L~~ky~-~~gl~ILaFPcnq-Fg~ 66 (108)
T PF00255_consen 38 QYKQLNELYEKYK-DKGLEILAFPCNQ-FGN 66 (108)
T ss_dssp HHHHHHHHHHHHG-GGTEEEEEEEBST-TTT
T ss_pred ccHHHHHHHHHHh-cCCeEEEeeehHH-hcc
Confidence 3357899999997 5789999988654 553
No 90
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.52 E-value=79 Score=24.37 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=13.5
Q ss_pred cCCCCeEEEEecCCcccCC
Q 033317 100 KDEDGFLYVTYSGENTFGS 118 (122)
Q Consensus 100 kd~DGfLyi~Ys~~~~fG~ 118 (122)
+..|||||| +..+.+|.
T Consensus 150 ~~~~~~l~m--sv~~~~g~ 166 (244)
T PRK13125 150 KLSPLFIYY--GLRPATGV 166 (244)
T ss_pred HhCCCEEEE--EeCCCCCC
Confidence 347999999 67888885
No 91
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.38 E-value=90 Score=24.65 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=53.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCcc-------c-eEEecCCC---chHHHHHHHHHhhcCCCCce
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERS-DIPNIDK-------K-KYLVPADL---TVGQFVYVIRKRIKLSAEKA 76 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~-~~p~L~k-------~-Kflv~~~~---tv~~~~~~lRk~L~l~~~~s 76 (122)
.-|.|||.+-.+...+.-.+++|||+--..+. .+-.+-+ . -.++|+-. +-..+..+.+.=..-. +-.
T Consensus 49 ~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~-~~p 127 (289)
T cd00951 49 SLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST-DLG 127 (289)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC-CCC
Confidence 35779999999998888889999999664310 0000000 1 12222222 2244555554433322 356
Q ss_pred EEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 77 IFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 77 lflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
+++|=+....-+.+.+.+|-+.+ +.+..|.+|+.
T Consensus 128 i~lYn~~g~~l~~~~l~~L~~~~---pnivgiKds~~ 161 (289)
T cd00951 128 VIVYNRANAVLTADSLARLAERC---PNLVGFKDGVG 161 (289)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC---CCEEEEEeCCC
Confidence 78884322222234566665323 45777777643
No 92
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=25.00 E-value=1.9e+02 Score=18.43 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=38.8
Q ss_pred ccceEEecCC--CchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033317 46 DKKKYLVPAD--LTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 114 (122)
Q Consensus 46 ~k~Kflv~~~--~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~ 114 (122)
...+++|++. .|+.++...|.+.+++.+.-.=-||- |... ..-...+.. +||--||+.+.|.
T Consensus 14 ~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt----~~g~-~~v~~~~~l--~~g~~yVa~g~e~ 77 (80)
T cd01617 14 KGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYT----LDGG-HRVSLLDEL--EDGGVYVASGREP 77 (80)
T ss_pred CCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEc----CCCC-eEeccHHHh--cCCCEEEEECCCC
Confidence 5678999986 48999999999999985443222322 1110 111122223 5889999886654
No 93
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=24.99 E-value=93 Score=24.73 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCc-cceEEecCCC---chHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNID-KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~-------p~L~-k~Kflv~~~~---tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.|||.+-.+...+...+++|||+--...+. + -.+. .--.++|+-. +-.+++.+.+.=..-.+.-
T Consensus 49 ~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~l 128 (294)
T TIGR02313 49 SLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDF 128 (294)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCC
Confidence 347799999999999989999999986653210 0 0000 0112222211 1244444444333222245
Q ss_pred eEEEEEcCC---CCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDNV---LPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~~---lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.+++|=+-. ..-+...+.+|-+++ ..+..+..|+.
T Consensus 129 pv~iYn~P~~tg~~l~~~~l~~L~~~~---pnv~giK~ss~ 166 (294)
T TIGR02313 129 PIIIYNIPGRAAQEIAPKTMARLRKDC---PNIVGAKESNK 166 (294)
T ss_pred CEEEEeCchhcCcCCCHHHHHHHHhhC---CCEEEEEeCCC
Confidence 688884321 122234566666544 45777777653
No 94
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=24.96 E-value=32 Score=21.11 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=30.2
Q ss_pred cceEEecCCCchHHHHHHHHHhhc-CCCCceEEEEEcCCCCC
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIK-LSAEKAIFIFVDNVLPP 87 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~-l~~~~slflyVn~~lp~ 87 (122)
.....++...|+++++..|..+.. +...+.+-+.||+....
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~ 54 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVP 54 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEG
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcC
Confidence 345678899999999999987752 22336788899987643
No 95
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=24.57 E-value=3.1e+02 Score=20.57 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEcc-CCCCCCCCccceEEe--cCCCchHHHHHHHHHhhcCCCCc
Q 033317 10 HDLEKRRAEAARIREKYPDRIPVIVEKA-ERSDIPNIDKKKYLV--PADLTVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ipVIvE~~-~~~~~p~L~k~Kflv--~~~~tv~~~~~~lRk~L~l~~~~ 75 (122)
.+|+.|.+.+.+....--....+|+... +.+.++.-..--.+| |++.+.+.-++-+|.+.+++|=+
T Consensus 54 ~p~~~R~~~l~~fl~~~~~~~~~iv~i~Dp~G~t~~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~ 122 (158)
T COG1019 54 EPYEVRLRNLRNFLESIKADYEEIVPIDDPYGPTVEDPDFEAIVVSPETYPGALKINEIREKRGLPPLE 122 (158)
T ss_pred CcHHHHHHHHHHHHHHhcCCcceEEEecCCCCCCCCcCceeEEEEccccchhHHHHHHHHHHCCCCCeE
Confidence 4789999999888776655555677665 334444333333443 45567788899999999998754
No 96
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=24.50 E-value=75 Score=19.80 Aligned_cols=38 Identities=5% Similarity=0.065 Sum_probs=25.6
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccch
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAI 91 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~ 91 (122)
.+-+++..|++++.. .|++++ +.+.+.+|+.+.+.+..
T Consensus 17 ~~~~~~~~tv~~ll~----~l~~~~-~~v~v~vNg~iv~~~~~ 54 (70)
T PRK08364 17 EIEWRKGMKVADILR----AVGFNT-ESAIAKVNGKVALEDDP 54 (70)
T ss_pred EEEcCCCCcHHHHHH----HcCCCC-ccEEEEECCEECCCCcC
Confidence 344678889988765 446665 56888899876544433
No 97
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=23.93 E-value=97 Score=21.84 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=31.9
Q ss_pred CCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHH
Q 033317 54 ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAI 95 (122)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~l 95 (122)
...++.+++..|++-|.-.+++.+.|-+++.. +.....|.++
T Consensus 67 ~~~~~~dvL~~i~~fl~~~p~e~VIl~l~~~~~~~~~~~l~~~ 109 (135)
T smart00148 67 LPIKLSEVLEAIKDFAFVTSPYPVILSLENHCSPDQQAKMAQM 109 (135)
T ss_pred ccEEHHHHHHHHHHHHHhCCCCcEEEeehhhCCHHHHHHHHHH
Confidence 45689999999999999999999999998754 3333344433
No 98
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=23.59 E-value=99 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.5
Q ss_pred ccchHHHHHhhhcCCCCeEEEEec
Q 033317 88 TGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 88 ~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
....+..+|++|++.+|+.+++-+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~v~i~ 43 (155)
T PF14060_consen 20 QGQSLQKYFDKYSENKGVTSVNIS 43 (155)
T ss_pred cchhHHHHHHHhCCCCCeEEEEEC
Confidence 347789999999999999998865
No 99
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=23.53 E-value=1e+02 Score=24.44 Aligned_cols=99 Identities=10% Similarity=0.093 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCC---CchHHHHHHHHHhhcCCCCce
Q 033317 10 HDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNIDK--------KKYLVPAD---LTVGQFVYVIRKRIKLSAEKA 76 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p~L~k--------~Kflv~~~---~tv~~~~~~lRk~L~l~~~~s 76 (122)
-|.|||++-.+...+.-.+++|||+--...+. +-.+-+ --.++|.. .+-.+++.+.+.=..-.++-.
T Consensus 51 Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lp 130 (290)
T TIGR00683 51 LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLN 130 (290)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 47799999999899888899999997653211 000000 11222321 123556665554433223457
Q ss_pred EEEEEcCC---CCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 77 IFIFVDNV---LPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 77 lflyVn~~---lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
+++|=+-. .+=..+++.+|-+ .+.+..|.+|+
T Consensus 131 v~lYn~P~~tg~~l~~~~i~~L~~----~pnv~giK~s~ 165 (290)
T TIGR00683 131 MIVYSIPFLTGVNMGIEQFGELYK----NPKVLGVKFTA 165 (290)
T ss_pred EEEEeCccccccCcCHHHHHHHhc----CCCEEEEEeCC
Confidence 88884422 1222234555542 24566676654
No 100
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=23.38 E-value=1.5e+02 Score=18.87 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=39.5
Q ss_pred ecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
+..+.||+++...|..+.++++.+- =|+.++.....+.++++ |. -+ ++.++++.-...
T Consensus 19 v~~~~TV~~lK~~i~~~~gi~~~~Q-rLi~~Gk~L~D~~tL~~-y~-i~-~~~~i~l~~~~~ 76 (78)
T cd01797 19 LSRLTKVEELREKIQELFNVEPECQ-RLFYRGKQMEDGHTLFD-YN-VG-LNDIIQLLVRQD 76 (78)
T ss_pred cCCcCcHHHHHHHHHHHhCCCHHHe-EEEeCCEECCCCCCHHH-cC-CC-CCCEEEEEEecC
Confidence 5788999999999999888876533 23346666677778866 32 22 455887765443
No 101
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=22.81 E-value=80 Score=19.97 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.3
Q ss_pred HHHHhhCCCcccEEEEcc
Q 033317 20 ARIREKYPDRIPVIVEKA 37 (122)
Q Consensus 20 ~~i~~kyP~~ipVIvE~~ 37 (122)
..+.++|..+|||+.-..
T Consensus 40 ~~l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 40 PELFEKYGYRIPVLHIDG 57 (81)
T ss_dssp HHHHHHSCTSTSEEEETT
T ss_pred HHHHHHhcCCCCEEEEcC
Confidence 347889999999987544
No 102
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=22.78 E-value=2.1e+02 Score=18.10 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhcCCCC---ceEEEEE
Q 033317 43 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAE---KAIFIFV 81 (122)
Q Consensus 43 p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~---~slflyV 81 (122)
|.-.-+-..|+.+.|.++++..+-++.+++.+ =+||..+
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~ 54 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL 54 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe
Confidence 44455667899999999999999999999763 4555555
No 103
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=22.73 E-value=88 Score=21.73 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=19.2
Q ss_pred CceEEEEEcCCC---CCccchHHHHHhhh
Q 033317 74 EKAIFIFVDNVL---PPTGAIMSAIYEEK 99 (122)
Q Consensus 74 ~~slflyVn~~l---p~~~~~~~~lY~~~ 99 (122)
.+..|+|||+.. +.....+.+.|..+
T Consensus 47 ~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~ 75 (127)
T cd03483 47 KIIFILFINNRLVECSALRRAIENVYANY 75 (127)
T ss_pred CceEEEEEcCCEecCHHHHHHHHHHHHHh
Confidence 467899999964 45566677777776
No 104
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=22.51 E-value=88 Score=21.30 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhCCCcccE
Q 033317 13 EKRRAEAARIREKYPDRIPV 32 (122)
Q Consensus 13 e~R~~e~~~i~~kyP~~ipV 32 (122)
.++++..+.|++|+.+.|||
T Consensus 35 q~~q~Wl~sI~ekd~nlvPI 54 (92)
T PF15243_consen 35 QQHQAWLQSIAEKDNNLVPI 54 (92)
T ss_pred HHHHHHHHHHHHhccCcCcc
Confidence 56788999999999999886
No 105
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=22.49 E-value=95 Score=19.74 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCchHHHHHHHHHhhc-----CCCCceEEEEEcCCCCCccch
Q 033317 55 DLTVGQFVYVIRKRIK-----LSAEKAIFIFVDNVLPPTGAI 91 (122)
Q Consensus 55 ~~tv~~~~~~lRk~L~-----l~~~~slflyVn~~lp~~~~~ 91 (122)
..|++++...|..+.. +. ...+-++||..+-+.++.
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~-~~~~~~aVN~~~~~~~~~ 65 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALE-DGKLLAAVNQTLVSFDHP 65 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhc-CCCEEEEECCEEcCCCCC
Confidence 4799999999987642 22 334568888865444443
No 106
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=22.37 E-value=1.1e+02 Score=26.31 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=32.2
Q ss_pred CccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 1 MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 1 ~~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
||+..|......++|.+++.+.....|+++||=+|-+.
T Consensus 216 mm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As 253 (445)
T cd01938 216 MMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS 253 (445)
T ss_pred hhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc
Confidence 56655666777899999999999999999999999874
No 107
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=22.16 E-value=2.5e+02 Score=20.03 Aligned_cols=51 Identities=4% Similarity=0.036 Sum_probs=35.3
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCc--eEEEEEcC----CCCCccchHHHHHh
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEK--AIFIFVDN----VLPPTGAIMSAIYE 97 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~--slflyVn~----~lp~~~~~~~~lY~ 97 (122)
...+.+.+..|+.+++..+.+++++...+ +||....+ ..+.++.+|.+.-.
T Consensus 15 ~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 15 TLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcC
Confidence 45688999999999999999999996544 33443332 23556666665543
No 108
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=22.14 E-value=2.6e+02 Score=22.00 Aligned_cols=48 Identities=27% Similarity=0.478 Sum_probs=32.8
Q ss_pred HHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHH-------HHHHHHhhcCCCCceEEEEEcCC
Q 033317 20 ARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQF-------VYVIRKRIKLSAEKAIFIFVDNV 84 (122)
Q Consensus 20 ~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~-------~~~lRk~L~l~~~~slflyVn~~ 84 (122)
++..+++|+++.+|- . .. ..+|.+++ -..|+ ++++++++.+-++++|.
T Consensus 2 ~~~a~~~pd~~a~~~--~--~~------------~~~Ty~~l~~~v~~la~~L~-~~g~~~~~~V~i~~~n~ 56 (417)
T PF00501_consen 2 ERQAQRYPDRIALID--D--EG------------RSLTYKQLYERVRKLAAALR-KLGVKKGDRVAILLPNS 56 (417)
T ss_dssp HHHHHHSTTSEEEEE--T--TT------------EEEEHHHHHHHHHHHHHHHH-HTTSSTTSEEEEEESSS
T ss_pred hhHHhhCCCceEEEE--C--CC------------EEEEHHHHHHHHHHHhhHHH-HhCCCccccccccCCcc
Confidence 345678999999987 1 11 23344444 45555 67899999999998875
No 109
>COG2002 AbrB Regulators of stationary/sporulation gene expression [Transcription]
Probab=22.10 E-value=1e+02 Score=20.16 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.7
Q ss_pred HHHHHhhcCCCCceEEEEEcC
Q 033317 63 YVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 63 ~~lRk~L~l~~~~slflyVn~ 83 (122)
.-+|++|++++.+.|-++++.
T Consensus 20 keiR~~lgi~~Gd~lei~~~~ 40 (89)
T COG2002 20 KEIREALGIKEGDVLEIIVDG 40 (89)
T ss_pred HHHHHHhCCCCCCEEEEEEeC
Confidence 558999999999999999874
No 110
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=22.05 E-value=62 Score=21.89 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=17.8
Q ss_pred CchHHHHHHHHHhhcCCCCceEEE
Q 033317 56 LTVGQFVYVIRKRIKLSAEKAIFI 79 (122)
Q Consensus 56 ~tv~~~~~~lRk~L~l~~~~slfl 79 (122)
..+.+|+...++.|+++.++ +|.
T Consensus 44 ~ai~~Fi~ack~~L~~~~~e-~Ft 66 (89)
T PF06395_consen 44 KAIYKFIQACKQELGFPDEE-LFT 66 (89)
T ss_pred HHHHHHHHHHHHhcCCCccc-eee
Confidence 45789999999999997654 453
No 111
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.01 E-value=93 Score=24.33 Aligned_cols=100 Identities=13% Similarity=0.152 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCcc-ceEEecCC---CchHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNIDK-KKYLVPAD---LTVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~-------p~L~k-~Kflv~~~---~tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.+||+.-.+...+.-+.++|||+--...+- + -.+.= --.++|+- .+-.++..+.+.=.. ..+-
T Consensus 50 ~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~-~~~~ 128 (289)
T PF00701_consen 50 SLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD-ATDL 128 (289)
T ss_dssp GS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH-HSSS
T ss_pred cCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh-hcCC
Confidence 457799999999988888999999997654321 0 00000 12233332 244555555554432 2345
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~---~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.+++|-+- ...-...++.+|.+ + +.+-.+.+++-
T Consensus 129 pi~iYn~P~~tg~~ls~~~l~~L~~-~---~nv~giK~s~~ 165 (289)
T PF00701_consen 129 PIIIYNNPARTGNDLSPETLARLAK-I---PNVVGIKDSSG 165 (289)
T ss_dssp EEEEEEBHHHHSSTSHHHHHHHHHT-S---TTEEEEEESSS
T ss_pred CEEEEECCCccccCCCHHHHHHHhc-C---CcEEEEEcCch
Confidence 68887763 12223334555555 3 44666665543
No 112
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.99 E-value=1.8e+02 Score=17.45 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=24.8
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l 85 (122)
..+.+-+++..|+.++... |++++ +.+-+-+|+.+
T Consensus 4 Ng~~~~~~~~~tv~~ll~~----l~~~~-~~v~v~vN~~i 38 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLES----LGLDP-RRVAVAVNGEI 38 (64)
T ss_pred CCeEEEcCCCCcHHHHHHH----cCCCC-CeEEEEECCEE
Confidence 3455667888898887664 45664 56778899875
No 113
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=21.98 E-value=1.9e+02 Score=20.46 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=27.3
Q ss_pred eEEecCCCchHHHHHHHHHhhcCC------CCceEEEEEcC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLS------AEKAIFIFVDN 83 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~------~~~slflyVn~ 83 (122)
..-|++++|..+++..|-++...+ ++-|||....+
T Consensus 39 ~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh~n 79 (112)
T cd01782 39 CIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVHEN 79 (112)
T ss_pred EEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEecC
Confidence 345999999999999999888733 56777876643
No 114
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.97 E-value=1.1e+02 Score=23.91 Aligned_cols=100 Identities=11% Similarity=0.100 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--C-------CCCcc-ceEEecCCC---chHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--I-------PNIDK-KKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~-------p~L~k-~Kflv~~~~---tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.+||++-.+..++..++++|||+--...+- + -.+.= --.++|+.. +-.++..+.+.=..-. .-
T Consensus 50 ~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~-~~ 128 (292)
T PRK03170 50 TLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT-DL 128 (292)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CC
Confidence 457899999999999999999999986654211 0 00000 122333322 2245555554433222 35
Q ss_pred eEEEEEcCC---CCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDNV---LPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~~---lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.+++|=+-. ..-....+.+| .++ ..+..+.+++.
T Consensus 129 pv~lYn~P~~~g~~l~~~~~~~L-~~~---p~v~giK~s~~ 165 (292)
T PRK03170 129 PIILYNVPGRTGVDILPETVARL-AEH---PNIVGIKEATG 165 (292)
T ss_pred CEEEEECccccCCCCCHHHHHHH-HcC---CCEEEEEECCC
Confidence 678884311 12123456666 333 45777777654
No 115
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.93 E-value=1.1e+02 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 10 HDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
-|.|||..-.+...+.-++++|||+--..
T Consensus 54 Ls~eEr~~~~~~~~~~~~~~~~viagvg~ 82 (293)
T PRK04147 54 LSTEEKKQVLEIVAEEAKGKVKLIAQVGS 82 (293)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEecCCC
Confidence 46799999999999999999999997643
No 116
>PRK13669 hypothetical protein; Provisional
Probab=21.77 E-value=81 Score=20.87 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=21.9
Q ss_pred ceEEEEEcCCC---CCccchHHHHHhhhcC
Q 033317 75 KAIFIFVDNVL---PPTGAIMSAIYEEKKD 101 (122)
Q Consensus 75 ~slflyVn~~l---p~~~~~~~~lY~~~kd 101 (122)
...|.+||+.. +.+++.+..||+.-++
T Consensus 45 ~~~FAlVng~~V~a~t~eeL~~kI~~~i~e 74 (78)
T PRK13669 45 EGLFALVNGEVVEGETPEELVENIYAHLEE 74 (78)
T ss_pred cCceEEECCeEeecCCHHHHHHHHHHHHhh
Confidence 56799999853 7888999999988753
No 117
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=21.54 E-value=2.5e+02 Score=18.67 Aligned_cols=21 Identities=10% Similarity=0.369 Sum_probs=15.9
Q ss_pred EEecC-CCchHHHHHHHHHhhc
Q 033317 50 YLVPA-DLTVGQFVYVIRKRIK 70 (122)
Q Consensus 50 flv~~-~~tv~~~~~~lRk~L~ 70 (122)
+-+|. +.|+.++...+++..+
T Consensus 14 ~~~~~~~~t~~~L~~~v~~~F~ 35 (81)
T cd06401 14 IPIHNEDITYDELLLMMQRVFR 35 (81)
T ss_pred EeccCccccHHHHHHHHHHHhc
Confidence 56665 4699999999976654
No 118
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=21.51 E-value=1.2e+02 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKA 37 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~ 37 (122)
.-|.|||++-.+...+.-.+++|||+--.
T Consensus 56 ~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 56 SLTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 34679999999989888899999998654
No 119
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.48 E-value=1.2e+02 Score=20.80 Aligned_cols=27 Identities=15% Similarity=0.493 Sum_probs=22.3
Q ss_pred chHHHHHHHHHhhcCCC-CceEEEEEcC
Q 033317 57 TVGQFVYVIRKRIKLSA-EKAIFIFVDN 83 (122)
Q Consensus 57 tv~~~~~~lRk~L~l~~-~~slflyVn~ 83 (122)
.+.-+...++..++.+| +.++|+|+|.
T Consensus 16 g~dgL~~lV~~~~~~dp~~g~~fvF~nr 43 (107)
T PF05717_consen 16 GIDGLAALVREELGLDPFSGDLFVFCNR 43 (107)
T ss_pred ChhHHHHHHHHhhcCCCCcceEEEEEec
Confidence 46778899999999874 5789999995
No 120
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.29 E-value=91 Score=21.83 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 033317 10 HDLEKRRAEAARIREKYPDR 29 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ 29 (122)
..||.|...-+..|-|||+.
T Consensus 33 l~fek~i~kN~e~R~K~~dd 52 (108)
T PF08216_consen 33 LSFEKRINKNQEMRIKYPDD 52 (108)
T ss_pred HHHHHHHHHhHHHHHhCCCC
Confidence 46899999999999999974
No 121
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=21.23 E-value=66 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=19.3
Q ss_pred CCccchHHHHHhhhcCCCCeEE
Q 033317 86 PPTGAIMSAIYEEKKDEDGFLY 107 (122)
Q Consensus 86 p~~~~~~~~lY~~~kd~DGfLy 107 (122)
=+.+..|..++..|+..||.+|
T Consensus 101 Ys~s~~l~tI~kGfk~~dg~iy 122 (148)
T PF08469_consen 101 YSFSSRLVTIHKGFKTKDGRIY 122 (148)
T ss_pred EEccchhHHHHhcccCCCCcEe
Confidence 3677889999999999999886
No 122
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.17 E-value=1.6e+02 Score=18.26 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=13.3
Q ss_pred chHHHHHhhhcCCCCeEEEEecC
Q 033317 90 AIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 90 ~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
..|.++|++|++.+++=.|..+.
T Consensus 21 ~~l~~l~~~~~~~~~v~~v~Vs~ 43 (95)
T PF13905_consen 21 PKLKELYKKYKKKDDVEFVFVSL 43 (95)
T ss_dssp HHHHHHHHHHTTTTTEEEEEEE-
T ss_pred HHHHHHHHHhCCCCCEEEEEEEe
Confidence 35788888887555544444433
No 123
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=20.49 E-value=6.1e+02 Score=22.55 Aligned_cols=88 Identities=11% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCCcccEEEEccCCCCCCC-CccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC
Q 033317 26 YPDRIPVIVEKAERSDIPN-IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG 104 (122)
Q Consensus 26 yP~~ipVIvE~~~~~~~p~-L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DG 104 (122)
-.+.|+|-+.+.+.=.+|. -++.-.+|-.-.=++-|..+|+.+......-.+.||.+..-...|-.-.+=.+.+. .+|
T Consensus 432 ~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~LffG~R~~~~D~lY~~El~~~~-~~g 510 (600)
T PRK10953 432 EEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYV-KEG 510 (600)
T ss_pred CCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcCCCCCeEEEeeccCCccchhHHHHHHHHH-HcC
Confidence 3577787775543335663 34455678888889999999998886655445677777766666655555555553 345
Q ss_pred e---EEEEecCCc
Q 033317 105 F---LYVTYSGEN 114 (122)
Q Consensus 105 f---Lyi~Ys~~~ 114 (122)
. |.+.||.++
T Consensus 511 ~l~~l~~afSRd~ 523 (600)
T PRK10953 511 LLTRIDLAWSRDQ 523 (600)
T ss_pred CcceEEEEECCCC
Confidence 3 567777543
No 124
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=20.48 E-value=1.4e+02 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHhhcCCCCceEEEEEcCCC-C--CccchHHHHHhhhcCCCCeEEE
Q 033317 55 DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-P--PTGAIMSAIYEEKKDEDGFLYV 108 (122)
Q Consensus 55 ~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p--~~~~~~~~lY~~~kd~DGfLyi 108 (122)
..++.+++..|++-|.-.+++.|.|-+++.- + .....|.+.+.... +.+||.
T Consensus 73 ~~~f~dvl~~i~~fl~~~p~e~vIlsl~~~~~~~~~~q~~~~~~~~~~~--g~~l~~ 127 (274)
T cd00137 73 DIFLKEVIEAIAQFLKKNPPETIIMSLKNEVDSMDSFQAKMAEYCRTIF--GDMLLT 127 (274)
T ss_pred CcCHHHHHHHHHHHHHHCCCCeEEEEEEecCCCcHHHHHHHHHHHHHhh--hhhhcc
Confidence 6789999999999999999999999998743 3 56667777777663 335554
No 125
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.41 E-value=2.5e+02 Score=17.94 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=39.3
Q ss_pred CCCCccceEEecCCCchHHHHHHHHHhhcCCCCc-eEEEEEcC--CCCCccchHHHH
Q 033317 42 IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEK-AIFIFVDN--VLPPTGAIMSAI 95 (122)
Q Consensus 42 ~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~-slflyVn~--~lp~~~~~~~~l 95 (122)
+|+=....-.|.+.+|+.++..-+-++-+++++. .+|+..++ ..+..++.++.|
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~~d~~~L 62 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLDTDSSSL 62 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCchhhhhhh
Confidence 5666677888999999999999999999998764 33444344 446777666555
No 126
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=20.01 E-value=1.5e+02 Score=23.12 Aligned_cols=58 Identities=19% Similarity=0.297 Sum_probs=35.0
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC--CCCeEEEEecCC
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD--EDGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd--~DGfLyi~Ys~~ 113 (122)
+..-|.-..+++..+|...+++.=.+. + +.++.-..+.++|+++.+ -|..|+++.|+.
T Consensus 32 ~~~~y~D~~~i~~~efy~~l~~~~~~p-~---------TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~ 91 (280)
T PF02645_consen 32 DGKEYRDGVDISPEEFYEKLRESGEIP-K---------TSQPSPGEFEEAFEKLLEEGYDEIIVITISSG 91 (280)
T ss_dssp TTEEEETTTTSCHHHHHHHHHHTTSEE-E---------EE---HHHHHHHHHHHHHTTTSEEEEEES-TT
T ss_pred CCeEEecCCCCCHHHHHHHHHhcCCCc-e---------ecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence 334555555899999999887652221 1 123444567888887332 466999998875
Done!