Query 033317
Match_columns 122
No_of_seqs 107 out of 375
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rui_B Autophagy-related prote 100.0 1.2E-54 4E-59 307.1 14.0 116 2-117 3-118 (118)
2 3m95_A Autophagy related prote 100.0 1.2E-54 4.3E-59 309.6 13.0 117 2-118 9-125 (125)
3 3h9d_A ATG8, microtubule-assoc 100.0 1.7E-53 5.8E-58 301.6 12.4 114 4-117 6-119 (119)
4 1eo6_A GATE-16, golgi-associat 100.0 7.6E-52 2.6E-56 292.2 13.1 117 2-118 1-117 (117)
5 2zjd_A Microtubule-associated 100.0 4E-52 1.4E-56 298.4 9.6 118 2-120 9-128 (130)
6 2r2q_A Gamma-aminobutyric acid 100.0 2.4E-47 8.1E-52 266.6 12.4 110 3-112 1-110 (110)
7 4gdk_A Ubiquitin-like protein 100.0 1.1E-34 3.6E-39 196.8 10.4 85 32-117 6-91 (91)
8 1wz3_A Autophagy 12B, ATG12B, 100.0 2.3E-34 8E-39 196.8 9.1 85 27-117 11-96 (96)
9 3w1s_C Ubiquitin-like protein 100.0 8.9E-33 3.1E-37 187.3 9.4 85 27-117 6-91 (91)
10 2dyo_A Autophagy protein 5; ub 95.6 0.017 5.8E-07 45.7 5.5 99 10-112 183-286 (297)
11 4gdk_B Autophagy protein 5; pr 95.3 0.054 1.8E-06 42.4 7.2 81 28-112 183-271 (275)
12 3vqi_A ATG5; autophagy, E3-lik 95.0 0.02 7E-07 44.8 3.9 74 26-109 196-272 (274)
13 3goe_A DNA repair protein RAD6 93.9 0.09 3.1E-06 34.3 4.4 46 47-92 21-66 (82)
14 1vd2_A Protein kinase C, IOTA 86.2 1.2 4.2E-05 29.1 4.6 61 48-108 18-86 (89)
15 2uyz_B Small ubiquitin-related 82.5 3.2 0.00011 25.0 5.2 59 48-110 16-74 (79)
16 1oey_A P67-PHOX, neutrophil cy 81.9 4.4 0.00015 26.1 5.8 58 50-109 18-79 (83)
17 2k8h_A Small ubiquitin protein 81.5 7.8 0.00027 25.9 7.2 62 27-95 24-85 (110)
18 3a4r_A Nfatc2-interacting prot 81.2 7.5 0.00026 24.0 7.6 47 48-95 21-67 (79)
19 1wh3_A 59 kDa 2'-5'-oligoadeny 78.3 6.6 0.00022 23.9 5.7 75 27-112 5-80 (87)
20 1wy8_A NP95-like ring finger p 77.4 5.5 0.00019 24.5 5.2 60 49-112 22-82 (89)
21 1uh6_A Ubiquitin-like 5; beta- 76.4 6.5 0.00022 26.0 5.5 59 49-111 42-100 (100)
22 3mtn_B UBA80, ubcep1, ubiquiti 75.3 3.5 0.00012 24.9 3.7 59 49-111 17-75 (85)
23 2hj8_A Interferon-induced 17 k 74.9 6.2 0.00021 24.5 4.9 60 49-112 18-77 (88)
24 1wyw_B Ubiquitin-like protein 74.8 6.9 0.00024 24.9 5.2 75 27-111 19-93 (97)
25 1we6_A Splicing factor, putati 73.6 15 0.00053 23.7 6.8 81 21-111 19-103 (111)
26 3a9j_A Ubiquitin; protein comp 72.9 4.1 0.00014 23.9 3.5 58 49-111 14-72 (76)
27 4dwf_A HLA-B-associated transc 72.6 6.5 0.00022 24.2 4.6 75 27-112 3-77 (90)
28 3n3k_B Ubiquitin; hydrolase, p 72.6 3.3 0.00011 25.1 3.1 60 49-112 17-76 (85)
29 1ndd_A NEDD8, protein (ubiquit 71.4 4.9 0.00017 23.5 3.6 58 49-111 14-72 (76)
30 2dzi_A Ubiquitin-like protein 71.0 4.3 0.00015 24.3 3.3 60 28-94 6-65 (81)
31 1we7_A SF3A1 protein; structur 71.0 19 0.00064 23.5 7.5 85 22-111 18-107 (115)
32 2jxx_A Nfatc2-interacting prot 69.5 12 0.00041 24.5 5.5 64 26-95 22-85 (97)
33 1yqb_A Ubiquilin 3; structural 69.4 8.4 0.00029 24.7 4.7 74 27-112 20-94 (100)
34 4eew_A Large proline-rich prot 69.0 8.6 0.0003 23.5 4.5 62 26-94 14-75 (88)
35 3plu_A Ubiquitin-like modifier 68.5 22 0.00074 23.2 7.9 81 19-110 11-92 (93)
36 2kvr_A Ubiquitin carboxyl-term 68.1 6.6 0.00023 27.0 4.1 54 48-101 58-119 (130)
37 4dbg_A Ranbp-type and C3HC4-ty 67.6 21 0.0007 23.7 6.4 60 30-94 25-84 (105)
38 3dbh_I NEDD8; cell cycle, acti 67.6 5.6 0.00019 24.2 3.4 58 49-110 26-83 (88)
39 2kk8_A Uncharacterized protein 66.9 9 0.00031 23.8 4.3 57 49-110 24-82 (84)
40 2l7r_A Ubiquitin-like protein 66.4 14 0.00047 23.2 5.2 71 27-110 17-88 (93)
41 3phx_B Ubiquitin-like protein 66.3 8.4 0.00029 23.0 4.0 57 49-110 18-75 (79)
42 1ip9_A BEM1 protein; ubiquitin 65.8 7 0.00024 25.4 3.6 31 50-81 26-56 (85)
43 1wx7_A Ubiquilin 3; ubiquitin- 65.6 15 0.00053 23.5 5.4 59 49-112 30-89 (106)
44 3k9o_B Ubiquitin, UBB+1; E2-25 65.3 6.2 0.00021 24.6 3.3 60 49-112 15-74 (96)
45 2bwf_A Ubiquitin-like protein 64.1 8.7 0.0003 22.6 3.7 57 49-110 17-74 (77)
46 3v6c_B Ubiquitin; structural g 63.8 7.3 0.00025 24.2 3.4 56 49-109 31-87 (91)
47 1yx5_B Ubiquitin; proteasome, 63.7 7.5 0.00026 24.5 3.5 59 49-112 14-73 (98)
48 1wm3_A Ubiquitin-like protein 62.1 13 0.00045 22.3 4.3 48 47-95 13-60 (72)
49 2faz_A Ubiquitin-like containi 61.8 7.7 0.00026 23.1 3.1 56 50-110 18-75 (78)
50 4fbj_B NEDD8; effector-HOST ta 61.8 7.6 0.00026 24.1 3.2 59 49-111 14-72 (88)
51 1wx8_A Riken cDNA 4931431F19; 61.7 13 0.00044 23.2 4.3 58 49-111 30-88 (96)
52 2io0_B Small ubiquitin-related 60.7 19 0.00064 23.0 5.0 48 47-95 17-64 (91)
53 4hcn_B Polyubiquitin, ubiquiti 59.2 9 0.00031 24.3 3.3 73 27-110 20-93 (98)
54 1sif_A Ubiquitin; hydrophobic 58.3 9.9 0.00034 23.6 3.3 58 49-111 23-81 (88)
55 2kd0_A LRR repeats and ubiquit 57.7 9 0.00031 23.7 3.0 56 50-110 26-82 (85)
56 2lxa_A Ubiquitin-like protein 57.2 27 0.00091 22.0 5.3 43 52-95 20-63 (87)
57 1ttn_A DC-UBP, dendritic cell- 57.1 26 0.00089 22.4 5.3 60 49-113 37-97 (106)
58 2io1_B Small ubiquitin-related 55.9 21 0.00072 22.8 4.7 48 47-95 19-66 (94)
59 3m63_B Ubiquitin domain-contai 55.6 7.3 0.00025 25.1 2.4 61 27-95 26-86 (101)
60 2ojr_A Ubiquitin; lanthide-bin 54.1 16 0.00055 23.6 3.9 58 49-111 49-107 (111)
61 1x1m_A Ubiquitin-like protein 54.0 37 0.0013 21.7 5.7 55 55-113 44-101 (107)
62 1wgd_A Homocysteine-responsive 53.5 23 0.00077 22.0 4.5 76 28-111 6-85 (93)
63 2fnj_B Transcription elongatio 53.5 48 0.0016 22.4 6.3 64 51-117 17-86 (118)
64 1v5t_A 8430435I17RIK protein; 53.3 27 0.00091 21.7 4.8 60 51-113 23-84 (90)
65 2kan_A Uncharacterized protein 53.0 20 0.00069 22.6 4.2 74 27-112 13-88 (94)
66 1v5o_A 1700011N24RIK protein; 52.5 14 0.00048 23.6 3.4 58 50-111 26-84 (102)
67 3vdz_A Ubiquitin-40S ribosomal 52.1 15 0.00052 23.9 3.6 58 49-110 49-106 (111)
68 2klc_A Ubiquilin-1; ubiquitin- 52.0 14 0.00046 23.7 3.2 73 27-111 23-96 (101)
69 1wju_A NEDD8 ultimate buster-1 51.5 19 0.00065 23.6 3.9 46 48-94 32-77 (100)
70 3b08_A Polyubiquitin-C, ubiqui 51.5 36 0.0012 22.4 5.5 58 49-111 90-148 (152)
71 3nyi_A FAT acid-binding protei 51.5 47 0.0016 25.4 6.8 59 46-113 35-95 (297)
72 1yfb_A Transition state regula 51.1 13 0.00044 22.2 2.8 21 63-83 28-48 (59)
73 2wyq_A HHR23A, UV excision rep 49.9 39 0.0013 20.1 7.1 76 27-113 3-82 (85)
74 3rt3_B Ubiquitin-like protein 49.6 19 0.00067 24.3 3.9 60 49-111 16-76 (159)
75 3m62_B UV excision repair prot 49.3 10 0.00034 24.6 2.3 61 50-114 16-76 (106)
76 2d07_B Ubiquitin-like protein 48.1 26 0.00087 22.2 4.1 62 27-95 15-76 (93)
77 1j8c_A Ubiquitin-like protein 47.6 20 0.00068 24.0 3.6 59 49-112 45-104 (125)
78 2kc2_A Talin-1, F1; FERM, adhe 47.6 32 0.0011 23.6 4.7 41 41-82 17-57 (128)
79 1j0g_A Hypothetical protein 18 47.2 55 0.0019 21.2 6.1 58 43-101 21-79 (92)
80 3b1l_X E3 ubiquitin-protein li 52.8 4 0.00014 24.2 0.0 45 50-95 15-59 (76)
81 1wxv_A BAG-family molecular ch 46.4 30 0.001 21.3 4.1 60 49-113 20-86 (92)
82 2l66_A SSO7C4, transcriptional 46.3 18 0.0006 20.7 2.8 21 63-83 18-38 (53)
83 1wz0_A Ubiquitin-like protein 45.4 45 0.0015 21.7 5.1 48 47-95 36-83 (104)
84 2kjr_A CG11242; UBL, ubiquitin 45.0 57 0.002 20.7 7.7 64 27-94 13-81 (95)
85 2e5i_A Heterogeneous nuclear r 44.4 21 0.00072 23.9 3.4 30 72-101 21-51 (124)
86 1x5p_A Negative elongation fac 44.4 23 0.00079 21.6 3.4 34 79-113 18-59 (97)
87 1v86_A DNA segment, CHR 7, way 43.9 16 0.00056 23.0 2.6 45 49-95 30-74 (95)
88 3b08_A Polyubiquitin-C, ubiqui 43.7 17 0.00059 24.0 2.8 59 49-112 14-73 (152)
89 2kdi_A Ubiquitin, vacuolar pro 43.4 18 0.00062 23.7 2.8 59 50-113 24-83 (114)
90 1mvf_D MAZE protein, PEMI-like 43.2 13 0.00045 22.9 2.0 50 63-118 19-75 (82)
91 2i1s_A Hypothetical protein; m 42.9 53 0.0018 23.3 5.5 29 47-75 23-51 (188)
92 2kj6_A Tubulin folding cofacto 42.7 64 0.0022 20.6 8.1 63 28-94 13-81 (97)
93 2dzm_A FAS-associated factor 1 42.7 39 0.0013 21.9 4.4 61 50-114 23-84 (100)
94 1q1o_A Cell division control p 41.9 12 0.00042 24.7 1.8 25 48-72 25-49 (98)
95 1pqs_A Cell division control p 40.6 18 0.00062 22.7 2.4 23 50-72 6-28 (77)
96 2bz2_A Negative elongation fac 40.2 23 0.00079 23.1 3.0 35 79-114 42-84 (121)
97 2eke_C Ubiquitin-like protein 40.2 36 0.0012 22.4 3.9 48 47-95 42-89 (106)
98 4a3p_A Ubiquitin carboxyl-term 40.0 87 0.003 22.7 6.4 60 49-111 143-208 (217)
99 1v6e_A Cytoskeleton-associated 39.4 68 0.0023 19.9 5.8 47 28-79 6-53 (95)
100 1uel_A HHR23B, UV excision rep 39.2 30 0.001 21.6 3.3 61 49-114 14-78 (95)
101 3zzy_A Polypyrimidine tract-bi 37.0 29 0.001 23.6 3.2 33 69-101 21-54 (130)
102 3rt3_B Ubiquitin-like protein 36.7 41 0.0014 22.7 3.9 59 49-111 95-153 (159)
103 2kdb_A Homocysteine-responsive 36.7 29 0.001 22.3 3.0 65 27-97 21-88 (99)
104 2l32_A Small archaeal modifier 34.7 38 0.0013 20.7 3.2 36 50-90 15-50 (74)
105 3u5e_m 60S ribosomal protein L 34.4 8.4 0.00029 25.8 0.0 45 50-95 15-59 (128)
106 4b6w_A Tubulin-specific chaper 34.4 37 0.0013 21.2 3.1 31 50-80 19-50 (86)
107 1sjr_A Polypyrimidine tract-bi 33.8 62 0.0021 22.9 4.6 42 72-113 42-94 (164)
108 3d2w_A TAR DNA-binding protein 33.7 45 0.0016 20.2 3.5 36 79-114 14-59 (89)
109 3u30_A Ubiquitin, linear DI-ub 33.4 42 0.0014 23.1 3.6 58 49-111 34-92 (172)
110 1wjn_A Tubulin-folding protein 32.8 61 0.0021 20.2 4.1 32 50-81 27-59 (97)
111 2diu_A KIAA0430 protein; struc 31.7 66 0.0023 21.0 4.1 43 71-114 5-57 (96)
112 4efo_A Serine/threonine-protei 31.3 81 0.0028 20.4 4.5 36 48-83 26-61 (94)
113 3jr7_A Uncharacterized EGV fam 29.9 1.3E+02 0.0044 23.0 6.1 56 46-113 52-107 (298)
114 1x4c_A Splicing factor, argini 29.8 65 0.0022 20.0 3.8 25 89-113 29-60 (108)
115 2pjh_A Protein NPL4, nuclear p 29.0 30 0.001 21.3 2.0 29 51-79 19-48 (80)
116 1wf9_A NPL4 family protein; be 28.8 18 0.00061 23.4 0.9 61 49-115 20-98 (107)
117 3u5c_f 40S ribosomal protein S 28.6 12 0.00041 26.2 0.0 45 50-95 15-59 (152)
118 3fdj_A DEGV family protein; GU 28.4 89 0.0031 23.6 4.9 53 48-113 34-86 (278)
119 2ylm_A Ubiquitin carboxyl-term 27.8 55 0.0019 27.2 3.9 62 49-111 150-217 (530)
120 3tix_A Ubiquitin-like protein 27.5 35 0.0012 25.5 2.4 60 28-95 56-115 (207)
121 1pzx_A Hypothetical protein AP 27.5 80 0.0027 23.9 4.5 57 46-113 35-92 (289)
122 2daf_A FLJ35834 protein; hypot 27.1 1.2E+02 0.0041 20.5 4.9 59 49-112 30-89 (118)
123 3q3f_A Ribonuclease/ubiquitin 27.0 49 0.0017 23.9 3.1 58 49-111 119-177 (189)
124 2ylm_A Ubiquitin carboxyl-term 26.9 24 0.00081 29.5 1.5 51 47-97 353-410 (530)
125 3beg_B Splicing factor, argini 26.5 51 0.0017 20.9 2.8 36 79-114 19-62 (115)
126 2cqh_A IGF-II mRNA-binding pro 26.4 45 0.0015 19.9 2.5 16 52-67 16-31 (93)
127 4ajy_B Transcription elongatio 26.4 53 0.0018 22.2 3.0 62 52-118 18-87 (118)
128 2al3_A TUG long isoform; TUG U 26.2 72 0.0025 20.6 3.5 41 43-84 17-57 (90)
129 3l0w_B Monoubiquitinated proli 26.2 51 0.0017 23.1 3.0 60 49-112 14-73 (169)
130 3cmm_A Ubiquitin-activating en 26.1 75 0.0026 28.8 4.7 50 49-100 921-981 (1015)
131 2l76_A Nfatc2-interacting prot 26.0 90 0.0031 20.4 4.0 48 47-95 32-79 (95)
132 3kyd_D Small ubiquitin-related 25.8 1E+02 0.0034 20.6 4.3 62 27-95 38-99 (115)
133 3gs2_A E3 ubiquitin-protein li 24.6 1.6E+02 0.0056 19.7 8.4 84 29-112 3-109 (111)
134 2kzr_A Ubiquitin thioesterase 24.6 62 0.0021 19.6 2.9 58 52-112 17-78 (86)
135 2krc_A DNA-directed RNA polyme 24.6 60 0.002 21.3 2.9 49 54-117 28-76 (99)
136 1v2y_A 3300001G02RIK protein; 24.6 32 0.0011 22.6 1.6 65 50-117 22-101 (105)
137 4a20_A Ubiquitin-like protein 24.5 50 0.0017 21.2 2.5 55 52-111 38-95 (98)
138 3tuo_A DNA-binding protein SAT 24.5 1.5E+02 0.0053 19.7 4.9 69 28-98 6-93 (105)
139 1ryj_A Unknown; beta/alpha pro 24.5 63 0.0021 19.1 2.8 36 50-90 18-53 (70)
140 2rdm_A Response regulator rece 24.0 77 0.0026 19.3 3.3 54 17-72 68-124 (132)
141 3pge_A SUMO-modified prolifera 24.0 63 0.0022 23.7 3.2 39 47-85 40-78 (200)
142 2dt8_A DEGV family protein; fa 24.0 1.1E+02 0.0037 23.1 4.7 58 46-113 33-91 (280)
143 3s5o_A 4-hydroxy-2-oxoglutarat 23.5 72 0.0024 24.4 3.6 29 9-37 63-91 (307)
144 1vjk_A Molybdopterin convertin 23.5 53 0.0018 20.6 2.4 42 49-90 30-81 (98)
145 1wf0_A TDP-43, TAR DNA-binding 23.2 39 0.0013 20.0 1.7 25 90-114 20-53 (88)
146 3fys_A Protein DEGV; fatty aci 22.9 2.1E+02 0.007 22.1 6.2 59 45-113 66-125 (315)
147 3eb2_A Putative dihydrodipicol 22.5 53 0.0018 25.0 2.7 100 9-113 53-168 (300)
148 2div_A TRNA selenocysteine ass 22.5 86 0.0029 18.8 3.3 10 104-113 53-62 (99)
149 3l21_A DHDPS, dihydrodipicolin 22.1 61 0.0021 24.8 2.9 100 9-113 64-179 (304)
150 2yxg_A DHDPS, dihydrodipicolin 21.7 64 0.0022 24.3 3.0 101 9-113 49-165 (289)
151 3h5d_A DHDPS, dihydrodipicolin 21.6 84 0.0029 24.1 3.7 99 9-112 56-171 (311)
152 3po0_A Small archaeal modifier 21.4 44 0.0015 20.4 1.7 42 49-90 21-72 (89)
153 3a5f_A Dihydrodipicolinate syn 21.4 66 0.0023 24.3 3.0 30 9-38 50-79 (291)
154 2w1t_A Spovt, stage V sporulat 21.3 68 0.0023 23.2 2.9 20 63-82 20-39 (178)
155 3b4u_A Dihydrodipicolinate syn 21.3 89 0.003 23.6 3.7 102 9-113 52-173 (294)
156 3e96_A Dihydrodipicolinate syn 21.3 65 0.0022 24.7 3.0 29 9-37 61-89 (316)
157 2e5j_A Methenyltetrahydrofolat 21.2 1.1E+02 0.0037 18.4 3.6 17 52-68 27-43 (97)
158 3flu_A DHDPS, dihydrodipicolin 21.2 67 0.0023 24.3 3.0 30 9-38 56-85 (297)
159 2ehh_A DHDPS, dihydrodipicolin 21.1 66 0.0023 24.3 3.0 30 9-38 49-78 (294)
160 3qze_A DHDPS, dihydrodipicolin 21.0 68 0.0023 24.7 3.0 30 9-38 72-101 (314)
161 2cq4_A RNA binding motif prote 21.0 1.3E+02 0.0044 18.5 4.0 12 103-114 67-78 (114)
162 3tak_A DHDPS, dihydrodipicolin 20.9 69 0.0024 24.2 3.0 30 9-38 50-79 (291)
163 3fkr_A L-2-keto-3-deoxyarabona 20.9 68 0.0023 24.5 3.0 30 9-38 57-86 (309)
164 3cpr_A Dihydrodipicolinate syn 20.8 67 0.0023 24.5 2.9 30 9-38 65-94 (304)
165 2ojp_A DHDPS, dihydrodipicolin 20.7 70 0.0024 24.2 3.0 30 9-38 50-79 (292)
166 1f6k_A N-acetylneuraminate lya 20.5 69 0.0024 24.2 3.0 30 9-38 53-82 (293)
167 2wkj_A N-acetylneuraminate lya 20.4 69 0.0024 24.4 2.9 30 9-38 60-89 (303)
168 3daq_A DHDPS, dihydrodipicolin 20.2 72 0.0025 24.1 3.0 30 9-38 51-80 (292)
169 3na8_A Putative dihydrodipicol 20.2 63 0.0022 24.9 2.7 101 9-113 73-189 (315)
170 1t0y_A Tubulin folding cofacto 20.2 1.9E+02 0.0064 18.8 7.0 47 28-79 5-52 (122)
171 3rpf_C Molybdopterin convertin 20.1 41 0.0014 20.0 1.3 38 54-91 19-58 (74)
172 1mgp_A Hypothetical protein TM 20.1 1.1E+02 0.0037 23.7 4.0 58 46-113 58-119 (313)
No 1
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=100.00 E-value=1.2e-54 Score=307.14 Aligned_cols=116 Identities=74% Similarity=1.167 Sum_probs=112.3
Q ss_pred ccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 2 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
|+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++|||||
T Consensus 3 m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~V 82 (118)
T 3rui_B 3 MKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFV 82 (118)
T ss_dssp ---CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEB
T ss_pred CcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 82 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 82 n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
||++|++|++||+||++|||+||||||+||+++|||
T Consensus 83 n~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG 118 (118)
T 3rui_B 83 NDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118 (118)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence 999999999999999999999999999999999999
No 2
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=100.00 E-value=1.2e-54 Score=309.55 Aligned_cols=117 Identities=58% Similarity=1.028 Sum_probs=113.9
Q ss_pred ccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 2 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
|++.||+++|||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||
T Consensus 9 ~~~~fK~~~s~e~R~~e~~~ir~kyP~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~V 88 (125)
T 3m95_A 9 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFV 88 (125)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEB
T ss_pred ceeeecccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033317 82 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 118 (122)
Q Consensus 82 n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (122)
||++|++|++||+||++|||+||||||+||+++|||+
T Consensus 89 nn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~e~tfG~ 125 (125)
T 3m95_A 89 NNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 125 (125)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEESSSCC--
T ss_pred CCccCCccchHHHHHHHcCCCCCeEEEEecCccccCC
Confidence 9999999999999999999999999999999999994
No 3
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=100.00 E-value=1.7e-53 Score=301.56 Aligned_cols=114 Identities=54% Similarity=0.951 Sum_probs=111.0
Q ss_pred ccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC
Q 033317 4 SYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 4 ~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~ 83 (122)
++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|++++||||||||
T Consensus 6 ~~fK~~~~~e~R~~e~~~ir~kyP~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~ 85 (119)
T 3h9d_A 6 SKYKMSHTFESRQSDAAKVRERHPDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTND 85 (119)
T ss_dssp CHHHHHSCHHHHHHHHHHHHHHSTTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETT
T ss_pred cchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 84 VLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 84 ~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
++|++|++||+||++|||+||||||+||+++|||
T Consensus 86 ~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~e~~fG 119 (119)
T 3h9d_A 86 TVLPSSAQMADIYSKYKDEDGFLYMKYSGEATFG 119 (119)
T ss_dssp EECCTTSBHHHHHHHHCCTTSCEEEEEECC-CC-
T ss_pred cCCCccchHHHHHHHcCCCCCeEEEEEecccccC
Confidence 9999999999999999999999999999999999
No 4
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=100.00 E-value=7.6e-52 Score=292.23 Aligned_cols=117 Identities=62% Similarity=1.043 Sum_probs=114.1
Q ss_pred ccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 2 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
|+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++|||||
T Consensus 1 ~~~~fk~~~~~e~R~~e~~~ir~kyP~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~v 80 (117)
T 1eo6_A 1 MKWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFV 80 (117)
T ss_dssp CCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEB
T ss_pred CCcchhccCCHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033317 82 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS 118 (122)
Q Consensus 82 n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (122)
|+++|++|++||+||++|||+||||||+||+++|||+
T Consensus 81 n~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~~~~fG~ 117 (117)
T 1eo6_A 81 DKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117 (117)
T ss_dssp TTBCCCTTSBHHHHHHHHCCTTSCEEEEEECCCCCC-
T ss_pred CCEecCccchHHHHHHHhCCCCCEEEEEEeCCccCCC
Confidence 9999999999999999999999999999999999995
No 5
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=100.00 E-value=4e-52 Score=298.40 Aligned_cols=118 Identities=37% Similarity=0.745 Sum_probs=114.3
Q ss_pred ccccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC-CCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEE-
Q 033317 2 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSD-IPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI- 79 (122)
Q Consensus 2 ~~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~-~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slfl- 79 (122)
|+ +||++||||+|++|+++||+|||+|||||||++++++ +|.|+|+||+||+++||++|+.+||++|+++++++|||
T Consensus 9 m~-~fK~~~~~e~R~~e~~~ir~kyP~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~ 87 (130)
T 2zjd_A 9 EK-TFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLL 87 (130)
T ss_dssp CC-CHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred hh-HHhhhCCHHHHHHHHHHHHHhCCCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEE
Confidence 44 8999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccCCCC
Q 033317 80 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 120 (122)
Q Consensus 80 yVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~~~ 120 (122)
|||+++|++|++||+||++|||+||||||+||+++|||+-+
T Consensus 88 ~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~e~tfG~~~ 128 (130)
T 2zjd_A 88 VNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFGMKL 128 (130)
T ss_dssp ETTTEECCTTSBHHHHHHHHCCTTSCEEEEEEEHHHHHHC-
T ss_pred EECCccCCccchHHHHHHHhCCCCCEEEEEEeCCcccCCcc
Confidence 99999999999999999999999999999999999999744
No 6
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=100.00 E-value=2.4e-47 Score=266.58 Aligned_cols=110 Identities=55% Similarity=1.017 Sum_probs=107.5
Q ss_pred cccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEc
Q 033317 3 KSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (122)
Q Consensus 3 ~~~fk~~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn 82 (122)
+++||++||||+|++|+++||++||++||||||+++++++|.|+++||+||.++||++|+.+||++|+++++++||||||
T Consensus 1 ~~~fk~~~~~e~R~~e~~~ir~k~p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn 80 (110)
T 2r2q_A 1 GFQYKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVN 80 (110)
T ss_dssp CCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBT
T ss_pred CccccccCCHHHHHHHHHHHHHhCCCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEEC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 83 NVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 83 ~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
|++|++|++||+||++|+|+||||||+||+
T Consensus 81 ~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 110 (110)
T 2r2q_A 81 NTIPPTSATMGQLYEDNHEEDYFLYVAYSD 110 (110)
T ss_dssp TBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred CEecCccChHHHHHHHcCCCCCEEEEEEeC
Confidence 999999999999999999999999999985
No 7
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=100.00 E-value=1.1e-34 Score=196.75 Aligned_cols=85 Identities=26% Similarity=0.449 Sum_probs=79.5
Q ss_pred EEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcCCCCeEEEEe
Q 033317 32 VIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 32 VIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
|+|--.+.+++|.|+++||+||+++||++|+.+||+||+++++++|||||||++ |++|++||+||++|| +||||||+|
T Consensus 6 v~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k-~DGfLyv~Y 84 (91)
T 4gdk_A 6 IDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG-SDGKLVLHY 84 (91)
T ss_dssp EEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC-BTTEEEEEE
T ss_pred EEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC-CCCEEEEEE
Confidence 555445558999999999999999999999999999999999999999999965 899999999999999 999999999
Q ss_pred cCCcccC
Q 033317 111 SGENTFG 117 (122)
Q Consensus 111 s~~~~fG 117 (122)
|+++|||
T Consensus 85 s~~~afG 91 (91)
T 4gdk_A 85 CKSQAWG 91 (91)
T ss_dssp ESSCCCC
T ss_pred eCccccC
Confidence 9999999
No 8
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=100.00 E-value=2.3e-34 Score=196.76 Aligned_cols=85 Identities=19% Similarity=0.400 Sum_probs=80.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC-CCCCccchHHHHHhhhcCCCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYEEKKDEDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~-~lp~~~~~~~~lY~~~kd~DGf 105 (122)
|+||+|++++. +++|.|+++||+||+++||++|+.+||+||+++ +||||||| .+|++|++||+||++||| |||
T Consensus 11 ~~KV~V~~~~~--~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~---alFlyvn~~~~Ps~d~~m~~LY~~~kd-DGf 84 (96)
T 1wz3_A 11 VQKIVVHLRAT--GGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD---SLFVYVNSAFSPNPDESVIDLYNNFGF-DGK 84 (96)
T ss_dssp -CEEEEEEEEC--TTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS---SCEEEEEEEECCCTTSBHHHHHHHHCB-TTB
T ss_pred CCeEEEEEEEC--CCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc---eEEEEECCcccCChhhHHHHHHHHhCC-CCE
Confidence 78999999888 679999999999999999999999999999998 99999999 679999999999999998 999
Q ss_pred EEEEecCCcccC
Q 033317 106 LYVTYSGENTFG 117 (122)
Q Consensus 106 Lyi~Ys~~~~fG 117 (122)
|||+||+++|||
T Consensus 85 Lyi~Ys~~~afG 96 (96)
T 1wz3_A 85 LVVNYACSMAWG 96 (96)
T ss_dssp EEEEEESCSCC-
T ss_pred EEEEEeCCcccC
Confidence 999999999999
No 9
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=99.98 E-value=8.9e-33 Score=187.28 Aligned_cols=85 Identities=14% Similarity=0.371 Sum_probs=67.4
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC-CCCccchHHHHHhhhcCCCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~-lp~~~~~~~~lY~~~kd~DGf 105 (122)
|.||-|.... -+++|.|+++||+||+++||++|+.+||+||++ ++|||||||+ .|++|++||+||++|| +|||
T Consensus 6 ~~Kv~vrfk~--~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l---~alFlyVNn~f~Ps~d~~~~~Ly~~fk-~dg~ 79 (91)
T 3w1s_C 6 IQKIQIKFQP--IGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM---DHVYCYINNSFAPSPQQNIGELWMQFK-TNDE 79 (91)
T ss_dssp CCEEEEEEEE--CCC-------EEEEETTSBHHHHHHHHHHHHTC---SCCEEEETTTBCCCTTSBHHHHHHHHC-BTTE
T ss_pred CCeEEEEEEe--cCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC---ceEEEEECCccCCCcccHHHHHHHHhC-CCCE
Confidence 4565555544 479999999999999999999999999999999 6999999996 5999999999999999 7999
Q ss_pred EEEEecCCcccC
Q 033317 106 LYVTYSGENTFG 117 (122)
Q Consensus 106 Lyi~Ys~~~~fG 117 (122)
|||+||+++|||
T Consensus 80 Lyv~Ys~~~afG 91 (91)
T 3w1s_C 80 LIVSYCASVAFG 91 (91)
T ss_dssp EEEEEEC---CC
T ss_pred EEEEEeCccccC
Confidence 999999999999
No 10
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A
Probab=95.65 E-value=0.017 Score=45.72 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhhCCCcccEEEEccCCC-CCCCCccceEEecC---CCchHHHHHHHHHhhc-CCCCceEEEEEcCC
Q 033317 10 HDLEKRRAEAARIREKYPDRIPVIVEKAERS-DIPNIDKKKYLVPA---DLTVGQFVYVIRKRIK-LSAEKAIFIFVDNV 84 (122)
Q Consensus 10 ~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~-~~p~L~k~Kflv~~---~~tv~~~~~~lRk~L~-l~~~~slflyVn~~ 84 (122)
+.|++=..=..++....+.+|||.|-..... ..+.+. -.++. ..|++++..- +..+. +-+..+..+++++.
T Consensus 183 ~d~~~F~~i~~kL~~~~~r~IPvRIy~~~~~~~~~~iq---p~~~~~~~~~TLgd~L~~-~~~lp~lf~~~~~~viihGI 258 (297)
T 2dyo_A 183 RNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQ---PTISMTGVNPTLKDIEGD-ILDVKEGINGNDVMVICQGI 258 (297)
T ss_dssp TCHHHHHHHHHHHCCSCCSBCCEEEECCSSSSSCCEEC---CCCBCTTCCCBTGGGHHH-HSCTTTC----CEEEEETTE
T ss_pred hhHHHHHHHHHhccCCCcceeeEEEEecCCCCceeeee---cccCCCCCCcCHHHHHhh-hhhccccCCCCCCeEEEeCc
Confidence 4444444444556655578999999765432 121111 11111 2267765410 22222 22334467888998
Q ss_pred CCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 85 LPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 85 lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
-+++++.+..||+++.-.||||||.-..
T Consensus 259 ~vpl~~pl~wl~~~l~~pDgFLhIvv~~ 286 (297)
T 2dyo_A 259 EIPWHMLLYDLYSKLRSFDGFLYITLVP 286 (297)
T ss_dssp EECTTCBHHHHHHHHCCTTSCEEEEEEE
T ss_pred cCCCCCcHHHHHHHhcCCCcEEEEEEEE
Confidence 8889999999999999999999998763
No 11
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B
Probab=95.30 E-value=0.054 Score=42.43 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=49.3
Q ss_pred CcccEEEEccCCCCCCCCccceEEe---cCCCchHHHHHHHHHhhc-C-C---CCceEEEEEcCCCCCccchHHHHHhhh
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLV---PADLTVGQFVYVIRKRIK-L-S---AEKAIFIFVDNVLPPTGAIMSAIYEEK 99 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv---~~~~tv~~~~~~lRk~L~-l-~---~~~slflyVn~~lp~~~~~~~~lY~~~ 99 (122)
.+|||.|-... ++-|.++..-=-+ ....|++++... .|. + . ......+++.+.-++.++.|.+||+++
T Consensus 183 r~IPvRiY~~~-~~~~~iQ~~v~p~~~~g~~~TLg~~L~~---~lP~lf~~~~~~~~~~viihGI~~pl~~pl~~l~~~l 258 (275)
T 4gdk_B 183 RYIPFRIYQTT-TERPFIQKLFRPVAADGQLHTLGDLLKE---VCPSAIDPEDGEKKNQVMIHGIEPMLETPLQWLSEHL 258 (275)
T ss_dssp SSCCEEEECTT-SSSSEECCCCCSBCTTSCBCBHHHHHHH---HCGGGCC------CEEEEBTTBCCCTTSBHHHHHHHS
T ss_pred ccceEEEEecC-CCCCccccCcCCcCCCCCcccHHHHHHH---hcccccCCCcccccceEEEeCCcCCCCCCHHHHHHhc
Confidence 57999996431 1222222110000 123577776554 332 1 1 113345677787799999999999999
Q ss_pred cCCCCeEEEEecC
Q 033317 100 KDEDGFLYVTYSG 112 (122)
Q Consensus 100 kd~DGfLyi~Ys~ 112 (122)
.-.||||||+-.-
T Consensus 259 ~y~DgFLhI~v~~ 271 (275)
T 4gdk_B 259 SYPDNFLHISIIP 271 (275)
T ss_dssp CCTTSCEEEEEEE
T ss_pred cCCCceEEEEEEe
Confidence 9999999997653
No 12
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus}
Probab=94.98 E-value=0.02 Score=44.79 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=47.9
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEec---CCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC
Q 033317 26 YPDRIPVIVEKAERSDIPNIDKKKYLVP---ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE 102 (122)
Q Consensus 26 yP~~ipVIvE~~~~~~~p~L~k~Kflv~---~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~ 102 (122)
-...|||.|-... + |.++. +|+ ...|++++.. ..+.-- .....+++.+.-++.++.|.+||+++.-.
T Consensus 196 ~~r~IPiRIy~~~-~--~~iQ~---~i~~~~~~~TLg~~L~---~~lp~l-~~~~~~iihGi~vp~~~pl~~l~~~~~y~ 265 (274)
T 3vqi_A 196 KAKSLPVRVWTSN-Y--AVLQP---TVPVTDKELSVAELLD---SIKLSS-DGVKSVIIQGIDVSIEDNIFELYDIFASI 265 (274)
T ss_dssp GCSBCCEEEECTT-S--CEECC---CCBCC---CBHHHHHH---TTTCCC---CCEEEETTEEEETTSBHHHHHHHHCCT
T ss_pred cccceeEEEEcCC-C--CeEec---ccCCCCccccHHHHHH---Hhcccc-ccceEEEEeCccCCCCCcHHHHHHHccCC
Confidence 4578999997643 2 22211 233 3667776554 334211 12334677787789999999999999999
Q ss_pred CCeEEEE
Q 033317 103 DGFLYVT 109 (122)
Q Consensus 103 DGfLyi~ 109 (122)
||||||.
T Consensus 266 DgFLhiv 272 (274)
T 3vqi_A 266 DGFLYLV 272 (274)
T ss_dssp TSCEEEE
T ss_pred CceEEEE
Confidence 9999986
No 13
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=93.86 E-value=0.09 Score=34.27 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.0
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIM 92 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~ 92 (122)
.-+|.|+.+.+|.+++..-|++-+++++.++.|..++.-..+++++
T Consensus 21 dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp 66 (82)
T 3goe_A 21 DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV 66 (82)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG
T ss_pred CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh
Confidence 4589999999999999999999999999999888887543333333
No 14
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=86.16 E-value=1.2 Score=29.11 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=43.4
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEE-EEcC--C--CCCccchHH---HHHhhhcCCCCeEEE
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDN--V--LPPTGAIMS---AIYEEKKDEDGFLYV 108 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slfl-yVn~--~--lp~~~~~~~---~lY~~~kd~DGfLyi 108 (122)
..+.||.+.++.++..-||.++++.+.+.+-+ |++. - ..+.|..|. ++|+-.+|..=.||+
T Consensus 18 ~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihv 86 (89)
T 1vd2_A 18 MITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV 86 (89)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEEEEE
Confidence 36779999999999999999999988887766 4542 2 247777765 466666644333443
No 15
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=82.48 E-value=3.2 Score=25.00 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=41.9
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
..+-|..+.||+++...+..+.++++++--++| ++.....+.+++++- - .++..|++..
T Consensus 16 ~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~-~G~~L~d~~tl~~~~--i-~~~~~i~l~~ 74 (79)
T 2uyz_B 16 IHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--M-EEEDVIEVYQ 74 (79)
T ss_dssp EEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--C-CTTEEEEEEE
T ss_pred EEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEeCCCCCHHHcC--C-CCCCEEEEEE
Confidence 357799999999999999999999887655544 555445677887741 1 1333666654
No 16
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.85 E-value=4.4 Score=26.14 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.7
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEc---CC-CCCccchHHHHHhhhcCCCCeEEEE
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NV-LPPTGAIMSAIYEEKKDEDGFLYVT 109 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn---~~-lp~~~~~~~~lY~~~kd~DGfLyi~ 109 (122)
.-||.+.+++++...|+++|++.+++...-|=. +. .+..|+.|...++.=+ +|-|-+.
T Consensus 18 irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~--n~~LtL~ 79 (83)
T 1oey_A 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLSEDSMKDAWGQVK--NYCLTLW 79 (83)
T ss_dssp EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECCTTTHHHHHTTCB--TTEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCeeccChHHHHHHHHhcc--CCcEEEE
Confidence 458999999999999999999987665555554 22 3678888999998765 4555443
No 17
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=81.49 E-value=7.8 Score=25.89 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=45.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+++|-|.|.-..+ ....|.|.++.+++.++....++.++++.+--|+| ++.-...+.|..++
T Consensus 24 ~~~I~IkVk~~~g------~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF-dG~~L~~~~Tp~dl 85 (110)
T 2k8h_A 24 TALVAVKVVNADG------AEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF-DGTPIDETKTPEEL 85 (110)
T ss_dssp CCCEEEEEEETTS------CCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES-SSCBCCSSSHHHHH
T ss_pred CCeEEEEEECCCC------CEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 3556666643321 23478999999999999999999999988666666 44444567888887
No 18
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=81.17 E-value=7.5 Score=24.01 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=38.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
..|.|.++.+++.++....++.++++++--|+| ++.-...+.|.+++
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f-dG~~l~~~~Tp~~l 67 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF-DGTKLSGKELPADL 67 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE-TTEECCSCCCHHHH
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 468999999999999999999999988655666 55444567788877
No 19
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.27 E-value=6.6 Score=23.94 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=49.6
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGf 105 (122)
|..+-|.|.... + +...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .- ++..
T Consensus 5 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qr-L~~~Gk~L~d~~tL~~~----~i~~g~~ 73 (87)
T 1wh3_A 5 SSGIQVFVKNPD-G-----GSYAYAINPNSFILGLKQQIEDQQGLPKKQQQ-LEFQGQVLQDWLGLGIY----GIQDSDT 73 (87)
T ss_dssp SSSEEEEEEETT-T-----EEEEEEECSSSBHHHHHHHHHHHTCCCTTTEE-EEETTEECCSSSBHHHH----TCCTTEE
T ss_pred CCCEEEEEEcCC-C-----CEEEEEeCCCChHHHHHHHHHHHhCCChHHEE-EEECCEEccCCCCHHHC----CCCCCCE
Confidence 455666665432 1 12245789999999999999999999876543 44466555667788765 22 3446
Q ss_pred EEEEecC
Q 033317 106 LYVTYSG 112 (122)
Q Consensus 106 Lyi~Ys~ 112 (122)
|++....
T Consensus 74 i~l~~~~ 80 (87)
T 1wh3_A 74 LILSKKK 80 (87)
T ss_dssp EEEEECS
T ss_pred EEEEEec
Confidence 7776643
No 20
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.41 E-value=5.5 Score=24.47 Aligned_cols=60 Identities=8% Similarity=0.039 Sum_probs=42.0
Q ss_pred eE-EecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kf-lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+ -|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- .++..|++....
T Consensus 22 ~l~~v~~~~tV~~lK~~i~~~~gip~~~qr-L~~~gk~L~d~~tL~~~--~i-~~g~~i~l~~~~ 82 (89)
T 1wy8_A 22 TIEDVSRKATIEELRERVWALFDVRPECQR-LFYRGKQLENGYTLFDY--DV-GLNDIIQLLVRP 82 (89)
T ss_dssp EEEEECTTCBHHHHHHHHHHHSCCCTTTEE-EEETTEECCSSSBHHHH--TC-CTTCEEEEEECC
T ss_pred EEEecCCCCCHHHHHHHHHHHHCcChhhEE-EEECCeECCCCCCHHHC--CC-CCCCEEEEEEeC
Confidence 35 389999999999999999999876543 44466555667788764 11 134577777643
No 21
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=76.41 E-value=6.5 Score=25.98 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=42.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|..+.||+++...|..+-++++++-- |..+++....+.+|++ |.-. ++..|+|.|.
T Consensus 42 ~lev~p~dTV~~lK~~Ia~k~Gip~~qQr-Li~~Gk~L~D~~TL~d-ygI~--~gstlhL~~~ 100 (100)
T 1uh6_A 42 RVKCNTDDTIGDLKKLIAAQTGTRWNKIV-LKKWYTIFKDHVSLGD-YEIH--DGMNLELYYQ 100 (100)
T ss_dssp EEEEETTSBHHHHHHHHHHHHCCCGGGCE-EEETTEECCSSCBHHH-HTCC--TTEEEEEECC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCCHHH-cCCC--CCCEEEEEeC
Confidence 45689999999999999999999876543 3345555567788887 3322 3447888883
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=75.32 E-value=3.5 Score=24.91 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=41.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|.++.++++++- -|+.++.....+.++++. .- .++..|++...
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~l~l~~r 75 (85)
T 3mtn_B 17 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKWSTLFLLLR 75 (85)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBTGGG--TC-CTTCEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCCHHHc--CC-CCCCEEEEEEE
Confidence 4678999999999999999999987654 344576655667777663 11 23557777654
No 23
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=74.87 E-value=6.2 Score=24.51 Aligned_cols=60 Identities=8% Similarity=-0.030 Sum_probs=42.6
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+-|+.+.||+++...|..+.++++++--.+ .++.....+.++++.= -+ ++..|++....
T Consensus 18 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~~--I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGKPLEDQLPLGEYG--LK-PLSTVFMNLRL 77 (88)
T ss_dssp EEEEESSSBHHHHHHHHHHHTCSCTTTEEEE-SSSSCCCTTSBHHHHH--CS-TTCEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEECCCCCcHHHcC--CC-CCCEEEEEEEc
Confidence 4568999999999999999999987754444 4555556677887752 22 34478887654
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=74.76 E-value=6.9 Score=24.87 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeE
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 106 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfL 106 (122)
+..+-|.|.-.. + +...+-|..+.||+++...+..+.++++.+--++| ++.....+.+++++- -+ ++..|
T Consensus 19 ~~~m~I~Vk~~~-g-----~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif-~Gk~L~d~~tl~dy~--i~-~g~~I 88 (97)
T 1wyw_B 19 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF-EGQRIADNHTPKELG--ME-EEDVI 88 (97)
T ss_dssp CCEEEEEEECTT-C-----CEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTCCHHHHT--CC-TTCEE
T ss_pred CCcEEEEEEeCC-C-----CEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE-CCeEcCCCCCHHHCC--CC-CCCEE
Confidence 456667775432 1 12357799999999999999999999887655554 555445677888741 11 34477
Q ss_pred EEEec
Q 033317 107 YVTYS 111 (122)
Q Consensus 107 yi~Ys 111 (122)
++...
T Consensus 89 ~l~~~ 93 (97)
T 1wyw_B 89 EVYQE 93 (97)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77654
No 25
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=73.63 E-value=15 Score=23.71 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHhhCCCcccEEEEccC--CCCCCCCccceEEecC-CCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHh
Q 033317 21 RIREKYPDRIPVIVEKAE--RSDIPNIDKKKYLVPA-DLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYE 97 (122)
Q Consensus 21 ~i~~kyP~~ipVIvE~~~--~~~~p~L~k~Kflv~~-~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~ 97 (122)
....++|.-|.|.|.... ++ +...+-|+. +.||+++...|....++++++-- |+.++.....+.+|++.
T Consensus 19 ~~l~~~~~~i~i~Vk~~~~~~g-----~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 90 (111)
T 1we6_A 19 QFLAQHPGPATIRVSKPNENDG-----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQK-LSGKAGFLKDNMSLAHY-- 90 (111)
T ss_dssp HHHHHCCSCEEEEECCTTCSSS-----CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSE-EECSSSBCCTTSBTTTT--
T ss_pred HHHHhCCCcEEEEEEecccCCC-----cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeE-EEECCEECCCCCcHHHC--
Confidence 344678888888885431 12 123467897 99999999999999999866433 33466655556666543
Q ss_pred hhcC-CCCeEEEEec
Q 033317 98 EKKD-EDGFLYVTYS 111 (122)
Q Consensus 98 ~~kd-~DGfLyi~Ys 111 (122)
.- ++..|+|...
T Consensus 91 --~I~~g~~l~l~~r 103 (111)
T 1we6_A 91 --NVGAGEILTLSLR 103 (111)
T ss_dssp --TCSSSCEEEEECS
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3446777653
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=72.90 E-value=4.1 Score=23.89 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=39.9
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~i~v~~~~tv~~lK~~i~~~~~i~~~~q-~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQRESTLHLVLR 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHe-EEEECCeECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568999999999999999999987644 444566544556666543 22 3446776653
No 27
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=72.63 E-value=6.5 Score=24.23 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeE
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFL 106 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfL 106 (122)
|..+-|.|.... + +...+-|+.+.||+++...|..+.++.+++--.+ .++.....+.+|++. .-++..|
T Consensus 3 ~~~m~i~Vk~~~-g-----~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~L~d~~tL~~~----~i~g~~i 71 (90)
T 4dwf_A 3 PDSLEVLVKTLD-S-----QTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRVLQDDKKLQEY----NVGGKVI 71 (90)
T ss_dssp CCEEEEEEEETT-C-----CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEECCTTSBGGGG----TCTTEEE
T ss_pred CcEEEEEEEcCC-C-----CEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCeECCCCCCHHHc----CCCCcEE
Confidence 455566664432 1 1234568999999999999999999987654333 466655667777763 2224467
Q ss_pred EEEecC
Q 033317 107 YVTYSG 112 (122)
Q Consensus 107 yi~Ys~ 112 (122)
++....
T Consensus 72 ~l~~~~ 77 (90)
T 4dwf_A 72 HLVERA 77 (90)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 776653
No 28
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=72.60 E-value=3.3 Score=25.09 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .- .++..|++....
T Consensus 17 ~~~v~~~~tV~~lK~~i~~~~~ip~~~q-rL~~~g~~L~d~~tL~~~--~i-~~~~~i~l~~rl 76 (85)
T 3n3k_B 17 ILEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-HNHSALYLLLKL 76 (85)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETBEECCTTCBTTTT--TC-CTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCCCHHHE-EEEECCeECCCCCCHHHC--CC-CCCCEEEEEEec
Confidence 4568899999999999999999987754 444566655666677653 11 235577776643
No 29
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=71.44 E-value=4.9 Score=23.54 Aligned_cols=58 Identities=5% Similarity=-0.010 Sum_probs=40.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|.++.+++++. .-|+.++.....+.++++. .- ++..|++...
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~~i~~~~-q~L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 14 EIDIEPTDKVERIKERVEEKEGIPPQQ-QRLIYSGKQMNDEKTAADY----KILGGSVLHLVLA 72 (76)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBGGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHH-EEEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 456899999999999999999998765 4445566554556666543 33 3446776653
No 30
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.05 E-value=4.3 Score=24.30 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=39.6
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
..+-|.|.... ++ ...+-|+.+.||+++...|.++.+++++.-- |+.++.....+.++++
T Consensus 6 ~~m~i~vk~~~-g~-----~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qr-L~~~gk~L~d~~tL~~ 65 (81)
T 2dzi_A 6 SGMQLTVKALQ-GR-----ECSLQVPEDELVSTLKQLVSEKLNVPVRQQR-LLFKGKALADGKRLSD 65 (81)
T ss_dssp SSEEEEEEETT-SC-----EEEEEECSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEECCTTSBGGG
T ss_pred CcEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHHCcCHHHEE-EEECCeECCCCCcHHH
Confidence 44556665322 21 2245689999999999999999999876443 3446654455666655
No 31
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=71.05 E-value=19 Score=23.49 Aligned_cols=85 Identities=8% Similarity=0.140 Sum_probs=55.0
Q ss_pred HHhhCCCcccEEEEccCCCCCC--CCccc--eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHh
Q 033317 22 IREKYPDRIPVIVEKAERSDIP--NIDKK--KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYE 97 (122)
Q Consensus 22 i~~kyP~~ipVIvE~~~~~~~p--~L~k~--Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~ 97 (122)
..+.+|..|.|.|.......-| .|..+ .+-|+.+.||+++...|....++.+++-- |+.++.....+.+|++.
T Consensus 18 ~l~~~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-L~~~Gk~L~D~~tL~~y-- 94 (115)
T 1we7_A 18 FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK-LQYEGIFIKDSNSLAYY-- 94 (115)
T ss_dssp HHHHCCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEE-EEETTEEECTTSBHHHH--
T ss_pred HHHhCCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEE-EEECCEECCCCCCHHHC--
Confidence 5667899898888654211100 13333 35689999999999999999999876543 33466554667778763
Q ss_pred hhcC-CCCeEEEEec
Q 033317 98 EKKD-EDGFLYVTYS 111 (122)
Q Consensus 98 ~~kd-~DGfLyi~Ys 111 (122)
.- ++..|+|...
T Consensus 95 --~i~~g~~i~lv~r 107 (115)
T 1we7_A 95 --NMASGAVIHLALK 107 (115)
T ss_dssp --TCCSSCEEEEEEC
T ss_pred --CCCCCCEEEEEEE
Confidence 22 3446777654
No 32
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=69.54 E-value=12 Score=24.47 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 26 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 26 yP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
-+++|-|.|.-..+. ....|.|.++.+++.++..-.++.+++.+.--|+| ++.-..+++|..+|
T Consensus 22 ~~~~I~LkV~~~dg~-----~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F-DG~rI~~~~TP~dL 85 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKH-----QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF-DGTKLSGRELPADL 85 (97)
T ss_dssp SCSEEEEEEEESSSS-----CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE-TTEECCSCSCHHHH
T ss_pred CCCeEEEEEEcCCCC-----EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE-CCEEcCCCCCHHHc
Confidence 345565665432111 13478999999999999999999999988655665 55445667788777
No 33
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=69.43 E-value=8.4 Score=24.74 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=49.2
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGf 105 (122)
++.+-|.|.... + +..+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..
T Consensus 20 ~~~m~I~Vk~~~-g------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~y----gI~~gst 87 (100)
T 1yqb_A 20 PHLIKVTVKTPK-D------KEDFSVTDTCTIQQLKEEISQRFKAHPDQL-VLIFAGKILKDPDSLAQC----GVRDGLT 87 (100)
T ss_dssp TTEEEEEEECSS-C------EEEEEEETTCBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBHHHH----TCCTTCE
T ss_pred CCeEEEEEEcCC-C------cEEEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHC----CCCCCCE
Confidence 345566664432 1 235678999999999999999999987644 444566655667788764 22 3446
Q ss_pred EEEEecC
Q 033317 106 LYVTYSG 112 (122)
Q Consensus 106 Lyi~Ys~ 112 (122)
|++....
T Consensus 88 I~l~~r~ 94 (100)
T 1yqb_A 88 VHLVIKR 94 (100)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 7776654
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=68.95 E-value=8.6 Score=23.53 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=42.5
Q ss_pred CCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 26 YPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 26 yP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
-|..+.|.|.... ++ ...+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++
T Consensus 14 ~~~~m~i~Vk~~~-g~-----~~~~~v~~~~tV~~lK~~i~~~~gip~~~qr-Li~~Gk~L~D~~tL~~ 75 (88)
T 4eew_A 14 EPDSLEVLVKTLD-SQ-----TRTFIVGAQMNVKEFKEHIAASVSIPSEKQR-LIYQGRVLQDDKKLQE 75 (88)
T ss_dssp -CCEEEEEEEETT-SC-----EEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGG
T ss_pred CCCeEEEEEEcCC-CC-----EEEEEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEECCCCCcHHH
Confidence 4566777775432 11 2245689999999999999999999876543 3446666566777765
No 35
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=68.54 E-value=22 Score=23.21 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=50.4
Q ss_pred HHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhh
Q 033317 19 AARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEE 98 (122)
Q Consensus 19 ~~~i~~kyP~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~ 98 (122)
+..+....|.+|-|.|.-.. + ++..+-|.++.||++|...|..+.++++++-.-.| ++.....+.+|+ .
T Consensus 11 ~~~~~~~~~~mIqI~Vk~~~-G-----kk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif-~Gk~LkD~~TL~----d 79 (93)
T 3plu_A 11 SSGLVPRGSHMIEVVVNDRL-G-----KKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK-GGSVLKDHISLE----D 79 (93)
T ss_dssp ---------CEEEEEEECTT-S-----CEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE-TTEECCTTSBTG----G
T ss_pred cccccCCCCceEEEEEECCC-C-----CEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe-CCEEccCcCCHH----H
Confidence 44455667788888885432 1 24457899999999999999999999987655455 556566666774 4
Q ss_pred hcCCCC-eEEEEe
Q 033317 99 KKDEDG-FLYVTY 110 (122)
Q Consensus 99 ~kd~DG-fLyi~Y 110 (122)
|.=.|| -|.+-|
T Consensus 80 Y~I~dgstLhL~~ 92 (93)
T 3plu_A 80 YEVHDQTNLELYY 92 (93)
T ss_dssp GTCCTTCEEEEEE
T ss_pred cCCCCCCEEEEEe
Confidence 443333 566655
No 36
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=68.12 E-value=6.6 Score=26.99 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=40.2
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCC-ceEEEEEc--C-C----CCCccchHHHHHhhhcC
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFVD--N-V----LPPTGAIMSAIYEEKKD 101 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~-~slflyVn--~-~----lp~~~~~~~~lY~~~kd 101 (122)
.-|.|.+++++++|...|-+.++++++ ..|+..++ | + ++.++.+|+..+....+
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~d~~~t~~~~~~~~~~ 119 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD 119 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCCBTTBCCCCCCCTTGGGTSBTHHHHT
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecCCCCCCCCCCCCccccHHHHHHHhhc
Confidence 358999999999999999999999754 66777776 3 2 34555667766666543
No 37
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=67.64 E-value=21 Score=23.71 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=42.2
Q ss_pred ccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 30 IPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 30 ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
+-|.||-...+. ....+-|.++.||+++...|-.+.++++..-= ++.++.+...+.+|++
T Consensus 25 l~v~v~d~~s~~----~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggkll~D~~TL~~ 84 (105)
T 4dbg_A 25 LWVSVEDAQMHT----VTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQRLARDQETLHS 84 (105)
T ss_dssp EEEEEEESSSCC----EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEEECTTCBTGG
T ss_pred EEEEEEccCCCC----ceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCeEccCcCcHHH
Confidence 446665543222 23456789999999999999999999986544 4456677666777764
No 38
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=67.63 E-value=5.6 Score=24.22 Aligned_cols=58 Identities=3% Similarity=-0.031 Sum_probs=40.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- .++..|++..
T Consensus 26 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~--~i-~~~~~i~l~~ 83 (88)
T 3dbh_I 26 EIDIEPTDKVERIKERVEEKEGIPPQQQ-RLIYSGKQMNDEKTAADY--KI-LGGSVLHLVL 83 (88)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-CEEETTEECCTTSBGGGG--TC-CTTCEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcCHHHE-EEEECCeECCCCCcHHHc--CC-CCCCEEEEEE
Confidence 4679999999999999999999987644 334466655667777764 12 1344666654
No 39
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=66.88 E-value=9 Score=23.77 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=39.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
.+-|+.+.||+++...|..+.++++++- -|+.++.. ...+.+|++. .- ++..|++..
T Consensus 24 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~lL~D~~tL~~y----~I~~gs~i~lv~ 82 (84)
T 2kk8_A 24 ELEVDYRDTLLVVKQKIERSQHIPVSKQ-TLIVDGIVILREDLTVEQC----QIVPTSDIQLEV 82 (84)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCCSSSBHHHH----TCCTTSCEEEEE
T ss_pred EEEECCCChHHHHHHHHHHHHCcChHHE-EEEECCEEecCCcCCHHHc----CCCCCCEEEEEE
Confidence 3468999999999999999999987653 34445654 6677788764 22 344566643
No 40
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=66.39 E-value=14 Score=23.23 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGf 105 (122)
+..+-|.|.. + +...+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .- ++..
T Consensus 17 ~~~m~I~Vk~---g-----~~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----~I~~gst 83 (93)
T 2l7r_A 17 RGSMQLFVRA---Q-----ELHTFEVTGQETVAQIKAHVASLEGIAPEDQ-VVLLAGAPLEDEATLGQC----GVEALTT 83 (93)
T ss_dssp ---CEEEEES---S-----SEEEEECCSSCBHHHHHHHHHHHHTCCGGGC-EEEETTEECCTTSBHHHH----TCCSSCE
T ss_pred CCcEEEEEEC---C-----CEEEEEeCCCCcHHHHHHHHHHHhCcChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 3456677754 1 2335678999999999999999999987654 344466555667788765 22 3446
Q ss_pred EEEEe
Q 033317 106 LYVTY 110 (122)
Q Consensus 106 Lyi~Y 110 (122)
|++..
T Consensus 84 I~lv~ 88 (93)
T 2l7r_A 84 LEVAG 88 (93)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 76654
No 41
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=66.29 E-value=8.4 Score=23.02 Aligned_cols=57 Identities=7% Similarity=0.009 Sum_probs=40.6
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
.+-|+.+.||+++...|..+.++++++- -|+.++.....+.++++. .= ++..|++..
T Consensus 18 ~~~v~~~~tV~~lK~~i~~~~gip~~~q-rL~~~G~~L~d~~tL~~~----~i~~~~~l~l~~ 75 (79)
T 3phx_B 18 TYEVRLTQTVAHLKQQVSGLEGVQDDLF-WLTFEGKPLEDQLPLGEY----GLKPLSTVFMNL 75 (79)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGE-EEEETTEECCTTSBGGGG----TCCTTCEEEEEE
T ss_pred EEEECCcChHHHHHHHHHhhcCCCHHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEE
Confidence 4579999999999999999999987754 444566555567777663 22 344677654
No 42
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=65.78 E-value=7 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=24.6
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEE
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV 81 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyV 81 (122)
-.||.+.+++++..-|+.||+++ +.-++.|-
T Consensus 26 IrvP~di~~~~L~dKi~~RLk~~-~~~l~~yk 56 (85)
T 1ip9_A 26 LMLKGDTTYKELRSKIAPRIDTD-NFKLQTKL 56 (85)
T ss_dssp EEECSCCCHHHHHHHHHHHHTSS-CEEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHhccc-ceEEEEec
Confidence 36999999999999999999994 33444443
No 43
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.61 E-value=15 Score=23.46 Aligned_cols=59 Identities=10% Similarity=0.124 Sum_probs=42.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~ 112 (122)
.+-|+.+.||++|...|..+.++.+++ .-|+.++.....+.+|+++ .- ++..|+|....
T Consensus 30 ~l~v~~~~TV~~LK~~I~~~~gip~~~-qrLi~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 30 DFSVTDTCTIQQLKEEISQRFKAHPDQ-LVLIFAGKILKDPDSLAQC----GVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEETTCCHHHHHHHHHHHHTCCTTT-EEEEETTEECCTTSCHHHH----TCCTTEEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhh-EEEEECCEECCCcCcHHHc----CCCCCCEEEEEEcC
Confidence 467899999999999999999998664 3445566655667788765 22 33467776643
No 44
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=65.34 E-value=6.2 Score=24.57 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=42.9
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+-|+.+.||+++...|..+.+++++. .-|+.++.....+.+|+++ .- .++..|++....
T Consensus 15 ~~~v~~~~TV~~LK~~i~~~~gip~~~-qrL~~~G~~L~d~~tL~~~--~i-~~~~~i~l~~r~ 74 (96)
T 3k9o_B 15 TLEVEPSDTIENVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLSDY--NI-QKESTLHLVLRL 74 (96)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGG-EEEEETTEECCTTSBTGGG--TC-CTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhH-EEEEECCEECCCCCcHHHc--CC-CCCCEEEEEEEc
Confidence 456899999999999999999998765 3444576655667777763 11 234578877654
No 45
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=64.14 E-value=8.7 Score=22.60 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
.+-|+.+.||+++...|....+++++.- -|+.++.....+.++++. +- ++..|++.-
T Consensus 17 ~~~v~~~~tV~~LK~~i~~~~~i~~~~q-rL~~~gk~L~d~~tL~~~----~i~~g~~i~l~~ 74 (77)
T 2bwf_A 17 EVNVAPESTVLQFKEAINKANGIPVANQ-RLIYSGKILKDDQTVESY----HIQDGHSVHLVK 74 (77)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEE
T ss_pred EEEECCCCcHHHHHHHHHHHhCCCHHHE-EEEECCeEcCCCCCHHHc----CCCCCCEEEEEE
Confidence 4578999999999999999999987654 344566554556666543 22 344666654
No 46
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=63.78 E-value=7.3 Score=24.20 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEE
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVT 109 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~ 109 (122)
.+-|+.+.||+++...|.++.++.++.- -|+.++.....+.++++. .= ++..|++.
T Consensus 31 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~ 87 (91)
T 3v6c_B 31 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLV 87 (91)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBTGGG----TCCTTCEEEEE
T ss_pred EEEECCCCCHHHHHHHHHhhhCCChhhE-EEEECCeECCCcCcHHHC----CCCCCCEEEEE
Confidence 4568999999999999999999987654 334466655666777663 22 33456654
No 47
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=63.66 E-value=7.5 Score=24.49 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=41.7
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~ 112 (122)
.+-|+.+.||+++...|.++.+++++.- -|+.++.....+.++++. .- ++..|++....
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~gi~~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (98)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCGGGE-EEEETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCCHHHc----CCCCCCEEEEEEeC
Confidence 4568899999999999999999987654 444466544556676653 22 45577777654
No 48
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=62.06 E-value=13 Score=22.27 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.4
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|.++.+++.++....++.++++++--|+|=+..+ .++.|.+++
T Consensus 13 ~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~~l 60 (72)
T 1wm3_A 13 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 60 (72)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 346899999999999999999999998776677755454 334454443
No 49
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=61.82 E-value=7.7 Score=23.09 Aligned_cols=56 Identities=7% Similarity=-0.010 Sum_probs=37.9
Q ss_pred EE-ecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 50 YL-VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 50 fl-v~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
+- |+.+.||+++...|..+.++++++-- |+.++.....+.++++. .- ++..|++..
T Consensus 18 l~~v~~~~tv~~lK~~i~~~~gip~~~qr-L~~~g~~L~d~~tL~~~----~i~~g~~i~l~~ 75 (78)
T 2faz_A 18 VDSLSRLTKVEELRRKIQELFHVEPGLQR-LFYRGKQMEDGHTLFDY----EVRLNDTIQLLV 75 (78)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTTTT----TCCTTCEEEEEE
T ss_pred EeccCCCCCHHHHHHHHHHHHCcChhhEE-EEECCEECCCCCCHHHc----CCCCCCEEEEEE
Confidence 45 88999999999999999999876543 33465544556666542 22 344666654
No 50
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=61.79 E-value=7.6 Score=24.12 Aligned_cols=59 Identities=3% Similarity=-0.019 Sum_probs=41.4
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .- .++..|++...
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~--~i-~~g~~l~l~~r 72 (88)
T 4fbj_B 14 EIDIEPTDKVERIKERVEEKEGIPPQQQR-LIYSGKQMNDEKTAADY--KI-LGGSVLHLVLA 72 (88)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGCE-EEETTEECCTTSBTTTT--TC-CTTCEEEEECB
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChhHEE-EEECCeECCCCCcHHHc--CC-CCCCEEEEEEE
Confidence 45688999999999999999999876543 34466655667777763 11 13447777654
No 51
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.66 E-value=13 Score=23.21 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=40.0
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCC-eEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDG-FLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DG-fLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.++.+++--.+ .++.....+.+|++. .-.|| .|+|...
T Consensus 30 ~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk~L~D~~tL~~~----gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 30 EFFLAENSNVRRFKKQISKYLHCNADRLVLI-FTGKILRDQDILSQR----GILDGSTVHVVVR 88 (96)
T ss_dssp EEEEETTCCHHHHHHHHHHHTCSCTTTBCCE-ETTEECCTTSCHHHH----TCCTTEEEECCBC
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEECCCcCCHHHC----CCCCCCEEEEEEe
Confidence 4678999999999999999999987654333 355555667788763 33344 5655443
No 52
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=60.68 E-value=19 Score=22.97 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.7
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|.++.+++.++....++.++++++--|+|=+..+ ..+.|.+++
T Consensus 17 ~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 64 (91)
T 2io0_B 17 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 64 (91)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 457899999999999999999999998766666644444 445565554
No 53
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=59.16 E-value=9 Score=24.25 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=46.1
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGf 105 (122)
+..+-|.|.... ++ ...+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .= ++..
T Consensus 20 ~~~m~I~Vk~~~-g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----~i~~g~~ 88 (98)
T 4hcn_B 20 GRPMQIFVKTLT-GK-----TITLEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKEST 88 (98)
T ss_dssp --CCEEEEEETT-CC-----EEEEECCTTCBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTCBSGGG----TCCTTEE
T ss_pred CCeEEEEEEeCC-CC-----EEEEEECCCCcHHHHHHHHHHHhCCChhHE-EEEECCEECCCCCcHHHC----CCCCCCE
Confidence 345666665432 11 234568999999999999999999987654 344466655666677653 22 3335
Q ss_pred EEEEe
Q 033317 106 LYVTY 110 (122)
Q Consensus 106 Lyi~Y 110 (122)
|++..
T Consensus 89 i~l~~ 93 (98)
T 4hcn_B 89 LHLVL 93 (98)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66553
No 54
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=58.35 E-value=9.9 Score=23.57 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=38.7
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.++++. .- ++..|++...
T Consensus 23 ~l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~i~l~~r 81 (88)
T 1sif_A 23 TVEMEPSDTIENLKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 81 (88)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGC-EEEETTEECCTTSBSGGG----TCCTTCEEEEEC-
T ss_pred EEEECCCChHHHHHHHHHHHHCcChhhE-EEEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999987643 344466544556666543 33 3346666543
No 55
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.74 E-value=9 Score=23.74 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=37.4
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEe
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTY 110 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~-DGfLyi~Y 110 (122)
+-|+.+.||+++...|....+++++.- -|+.++.....+.+|+++ .-. +..|++..
T Consensus 26 l~v~~~~TV~~LK~~I~~~~gip~~~q-rL~~~Gk~L~D~~tL~~~----gi~~g~~l~l~~ 82 (85)
T 2kd0_A 26 LSVSPDCTVKDLKSQLQPITNVLPRGQ-KLIFKGKVLVETSTLKQS----DVGSGAKLMLMA 82 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHHCCCTTTC-EEEETTEECCTTCBTTTT----TCCTTEEEEEEC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCeECCCcCCHHHC----CCCCCCEEEEEE
Confidence 468899999999999999999986543 333466554556666543 223 33566543
No 56
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=57.19 E-value=27 Score=21.99 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=31.6
Q ss_pred ecCCCchHHHHHHH-HHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 52 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 52 v~~~~tv~~~~~~l-Rk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
++++.||+++...| ..+-++++++-- |+.++.....+.+|++.
T Consensus 20 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y 63 (87)
T 2lxa_A 20 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSDL 63 (87)
T ss_dssp CCTTCBHHHHHHHHHHTTSCSSSTTEE-EEETTEECCTTCBHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcCCChHHEE-EEECCEECcCcCCHHHc
Confidence 34899999999999 777788776543 33466666777888854
No 57
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.05 E-value=26 Score=22.41 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=42.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 113 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (122)
.+-|+.+.||+++...|..+.++.++.--.+ .++.....+.+|++. .- ++..|+|.....
T Consensus 37 ~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~~tL~~y----gI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 37 KLVVRSTDTVFHMKRRLHAAEGVEPGSQRWF-FSGRPLTDKMKFEEL----KIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEECTTSHHHHHHHHHHHTTCCCSTTCEEE-ETTEECCTTSHHHHC----CCSSSCEEEEECCCS
T ss_pred EEEeCCCCcHHHHHHHHHHHHCcCcccEEEE-ECCEECCCCCcHHHc----CCCCCCEEEEEEeCC
Confidence 4679999999999999999999987654333 466555666777653 22 345778776544
No 58
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=55.91 E-value=21 Score=22.79 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.5
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|.++.+++.++...+++.++++++--|+|-+..+ ..+.|..++
T Consensus 19 ~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l-~~~~Tp~dl 66 (94)
T 2io1_B 19 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 66 (94)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEc-CCCCCHHHc
Confidence 346889999999999999999999998766666654444 344555554
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=55.64 E-value=7.3 Score=25.15 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
.-.|-|.|.. .+... .+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 26 ~m~i~I~Vk~-~g~~~------~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 26 AMSLNIHIKS-GQDKW------EVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGKILKDDQTVESY 86 (101)
T ss_dssp ---CCEEEEC-SSCCC------CBCCCTTSBHHHHHHHHHHHHSCCSTTCCEE-ETTEECCTTSBTTTT
T ss_pred CcEEEEEEEE-CCEEE------EEEeCCCCCHHHHHHHHHHHHCcChHHEEEE-ECCEECCCcCcHHHC
Confidence 3456677764 22222 2457899999999999999999987644333 366655666677653
No 60
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=54.10 E-value=16 Score=23.65 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=39.9
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.+++++.-- |+.++.....+.+|++. .- ++..|++...
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~L~D~~tL~~~----gI~~gs~I~l~~r 107 (111)
T 2ojr_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 107 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCSSCBTTTT----TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCcccEE-EEECCEECCCCCcHHHc----CCCCCCEEEEEEe
Confidence 45689999999999999999999876543 44466544556666553 22 3446776553
No 61
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.03 E-value=37 Score=21.73 Aligned_cols=55 Identities=5% Similarity=-0.039 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHhh--cCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033317 55 DLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 113 (122)
Q Consensus 55 ~~tv~~~~~~lRk~L--~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (122)
+.||+++...|..+. ++.+.+..=|+.++.....+.+|++. .- ++-.|+|.-...
T Consensus 44 ~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y----~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 44 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFY----GIQPGSTVHVLRKSW 101 (107)
T ss_dssp CCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHH----TCCTTCEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHc----CCCCCCEEEEEeCCC
Confidence 599999999999999 88877612233455544667788764 22 233677665443
No 62
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.53 E-value=23 Score=21.96 Aligned_cols=76 Identities=8% Similarity=0.152 Sum_probs=46.3
Q ss_pred CcccEEEEccCCCCCCCCccceEE--ecCCCchHHHHHHHHHhh--cCCCCceEEEEEcCCCCCccchHHHHHhhhcCCC
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYL--VPADLTVGQFVYVIRKRI--KLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED 103 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kfl--v~~~~tv~~~~~~lRk~L--~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~D 103 (122)
..+.|.|....+ . ...+- |+.+.||+++...|.... ++++++-- |+.++.....+.+|++....-+ ++
T Consensus 6 ~~m~i~Vk~~~~-~-----~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~Qr-Li~~Gk~L~D~~tL~~~~~~i~-~~ 77 (93)
T 1wgd_A 6 SGVTLLVKSPNQ-R-----HRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQR-LIYSGKLLLDHQCLRDLLPKQE-KR 77 (93)
T ss_dssp CCCEEEEECSSS-S-----CCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCE-EEETTEECCSSSCHHHHSCSSS-CS
T ss_pred cEEEEEEEeCCC-C-----eEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeE-EEECCEECcCcCCHHHHhcCCC-CC
Confidence 446677754321 1 11344 459999999999999998 88765433 3345665566778887542222 34
Q ss_pred CeEEEEec
Q 033317 104 GFLYVTYS 111 (122)
Q Consensus 104 GfLyi~Ys 111 (122)
..|+|...
T Consensus 78 ~~i~lv~~ 85 (93)
T 1wgd_A 78 HVLHLVCN 85 (93)
T ss_dssp EEEEEECC
T ss_pred CEEEEEeC
Confidence 46666543
No 63
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=53.52 E-value=48 Score=22.36 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC------CCCeEEEEecCCcccC
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD------EDGFLYVTYSGENTFG 117 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd------~DGfLyi~Ys~~~~fG 117 (122)
-|..+.||+++...|..+.++.+.+-- |+.++.....+.+|++ |.-. + .+--|++......+|-
T Consensus 17 ev~~sdTV~~lK~kI~~~egIP~~qQr-Li~~Gk~LeD~~TLsd-y~I~-~~~a~~q~~stL~L~lr~~g~fe 86 (118)
T 2fnj_B 17 DAKESSTVFELKRIVEGILKRPPEEQR-LYKDDQLLDDGKTLGE-CGFT-SQTARPQAPATVGLAFRADDTFE 86 (118)
T ss_dssp EEETTSBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTSBHHH-HTCC-TTTSBTTBCEEEEEEEBSSSCBC
T ss_pred EeCCcChHHHHHHHHHHHhCCCHHHeE-EEECCeECCCCCCHHH-cCcc-cccccCCCCCEEEEEecCCCcee
Confidence 489999999999999999999876543 3356666677888987 3322 2 2457888888555554
No 64
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=53.30 E-value=27 Score=21.66 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred EecCCCchHHHHHHHHHhhcCCCCceEEEE--EcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSAEKAIFIF--VDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~~~slfly--Vn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
-|+.+.||++|...|..+.++.++.--.+. .++.....+.+++++ .-+ ++..|+|--+.+
T Consensus 23 ~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~--~i~-~g~~l~l~~~~~ 84 (90)
T 1v5t_A 23 TLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL--KLK-PNTKIMMMGTRE 84 (90)
T ss_dssp SCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHH--TCC-TTEEEEEECCCS
T ss_pred EeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHc--CCC-CCCEEEEEecCc
Confidence 468899999999999999999866433330 455555666778773 112 344677765544
No 65
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=53.01 E-value=20 Score=22.58 Aligned_cols=74 Identities=12% Similarity=0.009 Sum_probs=47.8
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCcc-chHHHHHhhhcC-CCC
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKD-EDG 104 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~-~~~~~lY~~~kd-~DG 104 (122)
+..+.|.|.... + ....-|+.+.||+++...|..+.++++++- -|+.++.....+ .+|++. .- ++.
T Consensus 13 ~~~~~I~Vk~~~-~------~~~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~~tL~~y----gI~~gs 80 (94)
T 2kan_A 13 VRKIHVTVKFPS-K------QFTVEVDRTETVSSLKDKIHIVENTPIKRM-QLYYSGIELADDYRNLNEY----GITEFS 80 (94)
T ss_dssp SCCEEEEEECSS-C------EEEEEECTTCBHHHHHHHHHHHSSSCTTTE-EEEETTEEECCTTSBHHHH----TCCTTE
T ss_pred CCCEEEEEEcCC-c------EEEEEECCCCcHHHHHHHHHHHHCcCHHHE-EEEECCEECCCCcccHHHC----CCCCCC
Confidence 455666665431 1 234568999999999999999999986643 344455544555 777764 22 344
Q ss_pred eEEEEecC
Q 033317 105 FLYVTYSG 112 (122)
Q Consensus 105 fLyi~Ys~ 112 (122)
.|+|....
T Consensus 81 tl~lv~r~ 88 (94)
T 2kan_A 81 EIVVFLKS 88 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEEeC
Confidence 67776543
No 66
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.48 E-value=14 Score=23.57 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCcc-chHHHHHhhhcCCCCeEEEEec
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTG-AIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~-~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.-|+.+.||++|...|..+.++.+++-- |+.++.....+ .+|++. .-+ ++..|+|.-.
T Consensus 26 i~v~~~~TV~~LK~~I~~~~gip~~~qr-L~~~gk~L~D~~~tL~~y--gI~-~g~~l~l~~~ 84 (102)
T 1v5o_A 26 LQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQLLTDDHCSLGSY--GLK-DGDMVVLLQK 84 (102)
T ss_dssp EEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEEECCSSSBHHHH--TCC-TTEEEEECBC
T ss_pred EEcCCCCCHHHHHHHHHHHHCcChHHeE-EEECCEECCCCcccHHHC--CCC-CCCEEEEEEC
Confidence 4589999999999999999999866433 33455443444 567664 122 2336666543
No 67
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=52.07 E-value=15 Score=23.86 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=40.0
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEe
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTY 110 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Y 110 (122)
.+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|+++ .- .++..|++..
T Consensus 49 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--gI-~~gs~I~l~~ 106 (111)
T 3vdz_A 49 TLEVEPSDTIENVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLSDY--NI-QKESTLHLVL 106 (111)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTSBTTTT--TC-CTTCEEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCChHHE-EEEECCEECCCCCcHHHC--CC-CCCCEEEEEE
Confidence 4678999999999999999999987654 344566655566677653 11 1344666654
No 68
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=52.01 E-value=14 Score=23.72 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=48.7
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCe
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGF 105 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGf 105 (122)
+..+-|.|... ++ ...+-|+.+.||+++...|..+.+++++.- -|+.++.....+.+|++. .- ++..
T Consensus 23 ~~~m~I~Vk~~--g~-----~~~l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~~----gI~~g~~ 90 (101)
T 2klc_A 23 PKIMKVTVKTP--KE-----KEEFAVPENSSVQQFKEEISKRFKSHTDQL-VLIFAGKILKDQDTLSQH----GIHDGLT 90 (101)
T ss_dssp CCCEEEEEECS--SC-----EEEEEECSCCCHHHHHHHHHHHHTCCGGGE-EEEETTEEECTTCCTGGG----TCCTTCE
T ss_pred CCeEEEEEEeC--Cc-----EEEEEECCCCCHHHHHHHHHHHHCcChhhE-EEEECCEECCCcCcHHHc----CCCCCCE
Confidence 56777888554 21 235679999999999999999999987654 344466544556666553 33 3446
Q ss_pred EEEEec
Q 033317 106 LYVTYS 111 (122)
Q Consensus 106 Lyi~Ys 111 (122)
|+|...
T Consensus 91 I~l~~~ 96 (101)
T 2klc_A 91 VHLVIK 96 (101)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 776654
No 69
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.55 E-value=19 Score=23.65 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=36.0
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHH
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSA 94 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~ 94 (122)
...-|+.+.||+++...|..+.++++.+- -|..++.....+.+|++
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip~~qQ-rLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQENYI-KIVINKKQLQLGKTLEE 77 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCCSTTC-EEEETTEECCTTSBHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcCHHHe-EEEeCCeECCCCCcHHH
Confidence 34558999999999999999999987654 34456766677888876
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=51.52 E-value=36 Score=22.37 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=39.9
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|.++.+++++.--++ .++.....+.++++. .- ++..|++...
T Consensus 90 ~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~~L~d~~tL~~~----~i~~~~~i~l~~r 148 (152)
T 3b08_A 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLR 148 (152)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCEECCCCCCHHHc----CCCCCCEEEEEEe
Confidence 4568899999999999999999987654444 465544556666553 22 3446777654
No 71
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=51.51 E-value=47 Score=25.39 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=39.1
Q ss_pred ccceE-EecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEecCC
Q 033317 46 DKKKY-LVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~Kf-lv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~-DGfLyi~Ys~~ 113 (122)
+..-| .-..+++..+|...++..-+-.++.| .|++. .+.++|++..++ |..|+|+.|+.
T Consensus 35 ~~~~y~~D~~di~~~efy~~~~~~~~~~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 95 (297)
T 3nyi_A 35 DGETYYRDGVDITRDECYQRMVDDPKLFPKTS--------LPSVE-SYADVFRSFVEQGFPVVCFTITTL 95 (297)
T ss_dssp SSSCEEEBTTTBCHHHHHHHHHHCTTCCCEEE--------CCCHH-HHHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCEEEecCCCCCCHHHHHHHHHhCCCCCceec--------CCCHH-HHHHHHHHHHHCCCeEEEEECCCc
Confidence 44556 55568899999999976411223322 45544 677888887653 77999998874
No 72
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=51.11 E-value=13 Score=22.17 Aligned_cols=21 Identities=24% Similarity=0.562 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCCceEEEEEcC
Q 033317 63 YVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 63 ~~lRk~L~l~~~~slflyVn~ 83 (122)
.-+|++|++.+++.|.+.+.+
T Consensus 28 keiR~~Lgi~~Gd~l~i~~~~ 48 (59)
T 1yfb_A 28 IELRRTLGIAEKDALEIYVDD 48 (59)
T ss_dssp HHHHHHTTCCTTCEEEEEEET
T ss_pred HHHHHHcCCCCCCEEEEEEEC
Confidence 458999999999999998864
No 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=49.86 E-value=39 Score=20.10 Aligned_cols=76 Identities=12% Similarity=0.113 Sum_probs=47.1
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHh---hcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-C
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-E 102 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~---L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~ 102 (122)
|..+-|.|....+. ...+-|+.+.||+++...|..+ -++.+++- -|+.++.....+.+|++ |.- +
T Consensus 3 ~~~m~i~vk~~~g~------~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----~~i~~ 71 (85)
T 2wyq_A 3 PMAVTITLKTLQQQ------TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQ-KLIYAGKILSDDVPIRD----YRIDE 71 (85)
T ss_dssp -CCEEEEEEETTSC------EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGE-EEEETTEECCTTSBGGG----GCCCT
T ss_pred CceEEEEEEECCCC------EEEEEECCCCCHHHHHHHHHhhccccCCCHHHe-EEEECCEECcCCCCHHH----cCCCC
Confidence 55667777554221 2245689999999999999998 45665543 34446655556667765 333 4
Q ss_pred CCeEEEEecCC
Q 033317 103 DGFLYVTYSGE 113 (122)
Q Consensus 103 DGfLyi~Ys~~ 113 (122)
+..|++..+..
T Consensus 72 g~~i~l~~~~~ 82 (85)
T 2wyq_A 72 KNFVVVMVTKT 82 (85)
T ss_dssp TSEEEEEEC--
T ss_pred CCEEEEEEcCC
Confidence 55788776544
No 74
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=49.55 E-value=19 Score=24.35 Aligned_cols=60 Identities=8% Similarity=0.091 Sum_probs=41.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEE-EEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFI-FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slfl-yVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|....++++++--.+ |-++.....+.++++. .- .++..|++...
T Consensus 16 ~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y--~i-~~~~~l~l~~~ 76 (159)
T 3rt3_B 16 QVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ--GL-GPGSTVLLVVD 76 (159)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGG--TC-CTTCEEEEEEC
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHc--CC-CCCCEEEEEcc
Confidence 3468899999999999999999988654444 5255544667777653 11 13557777665
No 75
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=49.35 E-value=10 Score=24.59 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=41.8
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 114 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~ 114 (122)
+-|+.+.||++|...|..+.++.+++- -|+.++.....+.+|+++ .-+ ++..|++..+...
T Consensus 16 l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~~~--~i~-~g~~i~lv~~~~~ 76 (106)
T 3m62_B 16 LDLEPSNTILETKTKLAQSISCEESQI-KLIYSGKVLQDSKTVSEC--GLK-DGDQVVFMVSQKK 76 (106)
T ss_dssp ECCCTTSBHHHHHHHHHHTTTSCGGGC-EEEETTEECCTTSBTTTT--TCC-TTCEEEEECCC--
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhhE-EEEECCEECCCcCCHHHc--CCC-CCCEEEEEEcCCC
Confidence 458899999999999999999986654 344466655667777764 122 3457888765443
No 76
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=48.14 E-value=26 Score=22.24 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=42.3
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+++|-|.|.-.. + ....|.|.++.+++.++....++.+++++.--|+|=+..+ ..+.|..++
T Consensus 15 ~~~i~ikV~~~~-g-----~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l-~~~~Tp~dl 76 (93)
T 2d07_B 15 NDHINLKVAGQD-G-----SVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 76 (93)
T ss_dssp CCEEEEEEECTT-S-----CEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEECCC-C-----CEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEc-CCCCCHHHc
Confidence 456666664321 1 2346899999999999999999999998865566644444 344555443
No 77
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.63 E-value=20 Score=24.02 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=40.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCC-CeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDED-GFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~D-GfLyi~Ys~ 112 (122)
.+-|+.+.||++|...|..+.++.+++- -|+.++.....+.+|++ |.-.| ..|+|....
T Consensus 45 ~l~v~~~~TV~~LK~~I~~~~gip~~~Q-rLi~~Gk~L~D~~tL~d----ygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 45 EFAVPENSSVQQFKEAISKRFKSQTDQL-VLIFAGKILKDQDTLIQ----HGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCSCSSSE-EEEETTEEESTTSCGGG----TTCSSSEEEEEEEC-
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCcceE-EEEECCEEcCCCCCHHH----cCCCCCCEEEEEecc
Confidence 4568999999999999999999987654 34446654456666655 33333 467776543
No 78
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=47.59 E-value=32 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEc
Q 033317 41 DIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD 82 (122)
Q Consensus 41 ~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn 82 (122)
.+|+..-....|..+.+|++++..|.+++++...+- |-++.
T Consensus 17 ~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~e-y~L~~ 57 (128)
T 2kc2_A 17 RMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDE-YSLVR 57 (128)
T ss_dssp ECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSS-EEEEE
T ss_pred EcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCccc-ccccc
Confidence 356667778899999999999999999999986654 54453
No 79
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=47.21 E-value=55 Score=21.15 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=46.2
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC-CCccchHHHHHhhhcC
Q 033317 43 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL-PPTGAIMSAIYEEKKD 101 (122)
Q Consensus 43 p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l-p~~~~~~~~lY~~~kd 101 (122)
|.|.-+..-||++.-+..++.+--...++++..+ -+.-|+-+ ..++++-|++|=+|..
T Consensus 21 pklpfkvlsVPE~~PftAVlkfaaEeF~vp~~Ts-AiiT~dGiGInP~QtAGnvFlKhGs 79 (92)
T 1j0g_A 21 PRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATS-AIITNDGIGINPAQTAGNVFLKHGS 79 (92)
T ss_dssp TTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSE-EEECTTSCCCCCSSBHHHHHHHTCS
T ss_pred CCCCceEEecCccCchHHHHHHHHHHcCCCccce-EEEecCCcccChhhccchhhhhcCc
Confidence 4455667789999999999999999999988766 44455544 7888999999999964
No 80
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=52.75 E-value=4 Score=24.22 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=31.2
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+-|+.+.||+++...|....++++++--.+| ++.....+.++++.
T Consensus 15 ~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~-~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIF-AGKELPNHLTVQNC 59 (76)
Confidence 4578899999999999999888866543333 44444455666553
No 81
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=46.37 E-value=30 Score=21.28 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=38.1
Q ss_pred eEEecCC-----CchHHHHHHHHHhhcCCCCceEEEEEcCC-CCCccchHHHHHhhhcCCC-CeEEEEecCC
Q 033317 49 KYLVPAD-----LTVGQFVYVIRKRIKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDED-GFLYVTYSGE 113 (122)
Q Consensus 49 Kflv~~~-----~tv~~~~~~lRk~L~l~~~~slflyVn~~-lp~~~~~~~~lY~~~kd~D-GfLyi~Ys~~ 113 (122)
.+-|+.+ .||++|...|..+.++.++.-- |+.++. |...+.+|+++ .=.| ..|+|.-+..
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qr-L~~~Gk~L~D~~~~L~~~----~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQK-LIFKGKSLKEMETPLSAL----GIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCE-EEETTEEECCSSSBHHHH----TCCSSEEEEEESCCS
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEE-EEECCeecCCCcccHHHC----CCCCCCEEEEEecCC
Confidence 3457774 9999999999999998865433 334554 43335578764 2223 3666655443
No 82
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=46.32 E-value=18 Score=20.67 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCCceEEEEEcC
Q 033317 63 YVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 63 ~~lRk~L~l~~~~slflyVn~ 83 (122)
.-+|++|++.+++.+.+.+.+
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECS
T ss_pred HHHHHHcCcCCCCEEEEEEEC
Confidence 568999999999999988864
No 83
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.45 E-value=45 Score=21.71 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=36.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|.++.++..++....++.++++..--|+|=+..+ ..+.|..++
T Consensus 36 ~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l-~~~~Tp~dl 83 (104)
T 1wz0_A 36 VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPI-NETDTPAQL 83 (104)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBC-CTTSCTTTT
T ss_pred EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEc-CCCCCHHHc
Confidence 346899999999999999999999998866677655554 444555544
No 84
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.00 E-value=57 Score=20.68 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=41.0
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCc-eEEEEEcCC----CCCccchHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEK-AIFIFVDNV----LPPTGAIMSA 94 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~-slflyVn~~----lp~~~~~~~~ 94 (122)
++.|.|.|....... .....-|+.+.||+++...|..+.++++.+ .|++.-++. +-..+.+|++
T Consensus 13 ~~~v~l~It~s~~~~----~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~ 81 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDA----VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGY 81 (95)
T ss_dssp CCEEEEEEEESSCSC----EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHH
T ss_pred CCeEEEEEEECCCCc----eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhH
Confidence 466777775432111 123457999999999999999999998764 444432232 3355667765
No 85
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=44.44 E-value=21 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhhhcC
Q 033317 72 SAEKAIFIFVDNV-LPPTGAIMSAIYEEKKD 101 (122)
Q Consensus 72 ~~~~slflyVn~~-lp~~~~~~~~lY~~~kd 101 (122)
.++..|+|||+|- .+-....|.++|..|..
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~ 51 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGK 51 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCC
Confidence 4678899999984 35556678888888865
No 86
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.41 E-value=23 Score=21.62 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=18.6
Q ss_pred EEEcCCCCCccchHHHHHhhhcC--------CCCeEEEEecCC
Q 033317 79 IFVDNVLPPTGAIMSAIYEEKKD--------EDGFLYVTYSGE 113 (122)
Q Consensus 79 lyVn~~lp~~~~~~~~lY~~~kd--------~DGfLyi~Ys~~ 113 (122)
|||.| +.-.++.|.+++..|.. ..||-+|.|.+.
T Consensus 18 l~V~n-~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~ 59 (97)
T 1x5p_A 18 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKM 59 (97)
T ss_dssp EEEEC-SSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSH
T ss_pred EEEcC-CCCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCH
Confidence 44555 43444456666666642 356777777554
No 87
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=43.93 E-value=16 Score=23.02 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=31.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
.+-|+.+.||++|...|..+.++.+++--.+ .++... .|.+|++.
T Consensus 30 ~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~-~~Gk~L-dd~tL~~~ 74 (95)
T 1v86_A 30 DVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKGLVP-EDKTLREI 74 (95)
T ss_dssp EEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSSBCC-SSSBHHHH
T ss_pred EEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCeeC-CcCcHHHC
Confidence 3568999999999999999999986543223 344433 45566653
No 88
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=43.75 E-value=17 Score=24.04 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=39.7
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~ 112 (122)
.+-|+.+.|++++...|..+.+++++.--.+ .++.....+.++++. .- ++..|++....
T Consensus 14 ~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~~L~d~~tL~~~----~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 14 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY----NIQKESTLHLVLRL 73 (152)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTGGG----TCCTTCEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCeECcCcccHHHh----ccCCCCeeEEEeec
Confidence 4568899999999999999999987654433 455444556666543 22 34466666543
No 89
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=43.42 E-value=18 Score=23.71 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=40.8
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 113 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (122)
+-|+.+.||+++...|..+.++++++- -|+.++.....+.+|++. .- ++..|+|.....
T Consensus 24 l~v~~~~TV~~LK~~I~~~~gip~~~q-rLi~~Gk~L~D~~tL~~y----gI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 24 LEVESSDTIDNVKSKIQDKEGIPPDQQ-RLIWAGKQLEDGRTLSDY----NIQRESTLHLVLRLR 83 (114)
T ss_dssp EECCTTCBHHHHHHHHHHHHCCCGGGE-EEEETTEECCTTCBTTTT----TCCSSCEEEEEECCC
T ss_pred EEECCCCcHHHHHHHHHHHHCcChHHE-EEEECCEECCCCCcHHHC----CCCCCCEEEEEEEcC
Confidence 458899999999999999999987654 344466544556666543 22 345777776544
No 90
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=43.19 E-value=13 Score=22.92 Aligned_cols=50 Identities=8% Similarity=0.185 Sum_probs=19.4
Q ss_pred HHHHHhhcCCCCceEEEEEcC-C--C-CCcc---chHHHHHhhhcCCCCeEEEEecCCcccCC
Q 033317 63 YVIRKRIKLSAEKAIFIFVDN-V--L-PPTG---AIMSAIYEEKKDEDGFLYVTYSGENTFGS 118 (122)
Q Consensus 63 ~~lRk~L~l~~~~slflyVn~-~--l-p~~~---~~~~~lY~~~kd~DGfLyi~Ys~~~~fG~ 118 (122)
.-+|+.|++.+++.+.+.+.+ . + |... .++.++...+.+ | + +..+..||.
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~iii~p~~~~~~~~l~~ll~~~~~-~-~----~~~e~~wg~ 75 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITP-E-N----LHENIDWGE 75 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTEEEEEEC----------------------------------
T ss_pred HHHHHHcCCCCCCEEEEEEECCEEEEEECCCCCcCCHHHHHhhccc-c-c----cccccccCC
Confidence 457899999999999998864 3 2 5443 478899988853 3 3 234556763
No 91
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=42.85 E-value=53 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCc
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~ 75 (122)
...+.||.+.|+.+|=.+|+.-++.....
T Consensus 23 WRri~Vp~~~TL~~LH~vIq~afgw~~~H 51 (188)
T 2i1s_A 23 WRRIQVPENYTFLDLHKAIQAVMDWEDYH 51 (188)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHTTCCCCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCE
Confidence 57789999999999999999999987543
No 92
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=42.70 E-value=64 Score=20.59 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=40.4
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC--CC----CCccchHHH
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN--VL----PPTGAIMSA 94 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~--~l----p~~~~~~~~ 94 (122)
+-|+|.|....... .....-|+.+.||+++...|..+.++++.+---+|.+. .. -..+.+|++
T Consensus 13 ~~v~l~It~s~~~~----~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~ 81 (97)
T 2kj6_A 13 DSVHLHITHANLKS----FSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGF 81 (97)
T ss_dssp CCEEEEEEETTSSC----CCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHH
T ss_pred ceEEEEEEECCCCc----eEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHH
Confidence 56777775532111 22345799999999999999999999876543334431 22 244556665
No 93
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.68 E-value=39 Score=21.92 Aligned_cols=61 Identities=11% Similarity=0.211 Sum_probs=40.8
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEE-cCCCCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV-DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 114 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyV-n~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~ 114 (122)
+-|+.+.|+++|...|..+-++.+.+--.++. .+. ...+.+++++ .-+ .+..|+|......
T Consensus 23 v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~--~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 23 VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSL--HLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHH--CCC-SEEEEEECCSSSC
T ss_pred EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHc--CCC-CCCEEEEEecCCC
Confidence 45889999999999999999998765443432 334 4556678776 122 2347777665544
No 94
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=41.86 E-value=12 Score=24.73 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=22.4
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCC
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLS 72 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~ 72 (122)
...+||.+.++.+|+.-|++++++.
T Consensus 25 ~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 25 FTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4567999999999999999999876
No 95
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=40.64 E-value=18 Score=22.71 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEecCCCchHHHHHHHHHhhcCC
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLS 72 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~ 72 (122)
..||.+.++.+|..-|++++++.
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEeCCCCCHHHHHHHHHHHHccc
Confidence 46899999999999999999864
No 96
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=40.18 E-value=23 Score=23.10 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=22.2
Q ss_pred EEEcCCCCCccchHHHHHhhhcCC--------CCeEEEEecCCc
Q 033317 79 IFVDNVLPPTGAIMSAIYEEKKDE--------DGFLYVTYSGEN 114 (122)
Q Consensus 79 lyVn~~lp~~~~~~~~lY~~~kd~--------DGfLyi~Ys~~~ 114 (122)
|||+| +.-..+.|.+++..|... -||-+|.|.+.+
T Consensus 42 lfVgn-l~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~ 84 (121)
T 2bz2_A 42 LYVYG-EDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKME 84 (121)
T ss_dssp EEEEC-SSCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHH
T ss_pred EEEcC-CCCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHH
Confidence 55666 555556677777777542 477777776543
No 97
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=40.16 E-value=36 Score=22.41 Aligned_cols=48 Identities=6% Similarity=0.106 Sum_probs=36.4
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
...|.|.++.++..++....++.+++++.--|+|-+..+ ..+.|..+|
T Consensus 42 ~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl-~~~~Tp~dl 89 (106)
T 2eke_C 42 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDL 89 (106)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEEC-CTTCCTTTT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEc-CCCCCHHHc
Confidence 346889999999999999999999998866677644444 344555554
No 98
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=39.98 E-value=87 Score=22.71 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=42.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCC--ceEEEEEc-CC---CCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAE--KAIFIFVD-NV---LPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~--~slflyVn-~~---lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
...+++..|+.++...+++.++++++ -.|+.+-+ ++ +-..+.+|.++ .-.+|.-|.|-.-
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~---~l~~~Q~illE~r 208 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDA---GLYQGQVLVIEQK 208 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHH---TCCTTCEEEEEEC
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHh---CCCCCCEEEEEEe
Confidence 46789999999999999999999875 56666554 43 34556778775 2334556666554
No 99
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.41 E-value=68 Score=19.91 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=33.2
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCC-ceEEE
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAE-KAIFI 79 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~-~slfl 79 (122)
..|.|.|.... .+ .....-|+.+.||+++...|..+.+++++ +.|++
T Consensus 6 ~~v~l~I~~~~---~~--~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 6 SGVMVFISSSL---NS--FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp CCEEEEEEETT---SS--SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred cEEEEEEEECC---CC--eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 45777775432 11 23445799999999999999999999865 44544
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.17 E-value=30 Score=21.56 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=40.4
Q ss_pred eEEecCCCchHHHHHHHHHh---hcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCCc
Q 033317 49 KYLVPADLTVGQFVYVIRKR---IKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGEN 114 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~---L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~~ 114 (122)
.+-|+.+.||+++...|..+ -++++++- -|+.++.....+.+|++ |+- ++..|++......
T Consensus 14 ~~~v~~~~TV~~LK~~I~~~~~~~gip~~~q-rLi~~Gk~L~D~~tL~~----ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 14 KIDIDPEETVKALKEKIESEKGKDAFPVAGQ-KLIYAGKILNDDTALKE----YKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCTTTCCTTTE-EEEETTEECCTTSBGGG----GTCCSSSEEEEEESSCC
T ss_pred EEEECCCCHHHHHHHHHHhhcccCCCChhhE-EEEECCEECCCcCcHHH----CCCCCCCEEEEEEeCCC
Confidence 45688999999999999998 45765543 33446655556667754 333 3457777765443
No 101
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=36.98 E-value=29 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=23.6
Q ss_pred hcCCCCceEEEEEcCC-CCCccchHHHHHhhhcC
Q 033317 69 IKLSAEKAIFIFVDNV-LPPTGAIMSAIYEEKKD 101 (122)
Q Consensus 69 L~l~~~~slflyVn~~-lp~~~~~~~~lY~~~kd 101 (122)
+.-.++.-|.|||+|- .+-..+.|.+++..|..
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~ 54 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGT 54 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSC
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCC
Confidence 3445788899999994 56677778999998865
No 102
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=36.75 E-value=41 Score=22.66 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=40.7
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.++++. .=.++..|++...
T Consensus 95 ~~~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~~G~~L~d~~tL~~y---~i~~g~~l~l~~r 153 (159)
T 3rt3_B 95 TYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKPLEDQLPLGEY---GLKPLSTVFMNLR 153 (159)
T ss_dssp EEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEECCTTSBGGGG---TCCTTCEEEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCHHHEE-EEECCeecCCCCCHHHc---CCCCCCEEEEEEe
Confidence 45689999999999999999999877543 44466555556676653 1123457777654
No 103
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=36.68 E-value=29 Score=22.34 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=38.9
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhh--cCC-CCceEEEEEcCCCCCccchHHHHHh
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRI--KLS-AEKAIFIFVDNVLPPTGAIMSAIYE 97 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L--~l~-~~~slflyVn~~lp~~~~~~~~lY~ 97 (122)
+..+.|.|.-. ++... ...+-|+.+.||+++...|..++ ... ..+.| +.++.....+.+|++...
T Consensus 21 ~~~m~I~VK~~-~g~~~---~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrL--Iy~Gk~L~D~~tL~~y~~ 88 (99)
T 2kdb_A 21 GHPVTLIIKAP-NQKYS---DQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRL--VYSGRLLPDHLQLKDILR 88 (99)
T ss_dssp --CEEEEEECT-TSSSC---CEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCE--EETTEEECTTSBTHHHHT
T ss_pred CCeEEEEEEcC-CCCEE---EEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEE--EECCEECCCCCCHHHHhc
Confidence 35567777432 22110 11345799999999999999876 333 33333 345655567788887643
No 104
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=34.71 E-value=38 Score=20.66 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.6
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccc
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 90 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~ 90 (122)
.=+|+..|+++++ +.|++++++. -+.+|+...+.|.
T Consensus 15 ~ev~~g~Tv~dLL----~~Lgl~~~~V-vV~vNG~~v~~d~ 50 (74)
T 2l32_A 15 VAVDDDGTYADLV----RAVDLSPHEV-TVLVDGRPVPEDQ 50 (74)
T ss_dssp EECSTTCSHHHHH----HTTCCCSSCC-CEECCCCCCCTTS
T ss_pred EEcCCCCcHHHHH----HHcCCCcceE-EEEECCEECCHHH
Confidence 5688999999855 5779999887 4888987655554
No 105
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.35 E-value=8.4 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+-|+.+.||+++...|..+.++++++--.+ .++.....+.+|++.
T Consensus 15 l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~L~D~~tL~~~ 59 (128)
T 3u5e_m 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQLEDGRTLSDY 59 (128)
T ss_dssp ----------------------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHhCcChHHEEEE-ECCEECCCCCchhhh
Confidence 457888999999999998888876643333 355444556666653
No 106
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=34.35 E-value=37 Score=21.15 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=25.2
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCc-eEEEE
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEK-AIFIF 80 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~-slfly 80 (122)
--++.+.|++++...|..+-++++.+ .|.++
T Consensus 19 ~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 19 KRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 35899999999999999999998754 44443
No 107
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=33.85 E-value=62 Score=22.87 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred CCCceEEEEEcCC-CCCccchHHHHHhhhcCC----------CCeEEEEecCC
Q 033317 72 SAEKAIFIFVDNV-LPPTGAIMSAIYEEKKDE----------DGFLYVTYSGE 113 (122)
Q Consensus 72 ~~~~slflyVn~~-lp~~~~~~~~lY~~~kd~----------DGfLyi~Ys~~ 113 (122)
.++..+.|||+|- .+-....|.++|..|.+. .||=+|.|.+.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~ 94 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADP 94 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCH
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCH
Confidence 4667788999984 355666789999998642 34566666543
No 108
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=33.68 E-value=45 Score=20.20 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=24.0
Q ss_pred EEEcCCCC-CccchHHHHHhhhcC---------CCCeEEEEecCCc
Q 033317 79 IFVDNVLP-PTGAIMSAIYEEKKD---------EDGFLYVTYSGEN 114 (122)
Q Consensus 79 lyVn~~lp-~~~~~~~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (122)
|||+|--+ -.++.|.+++.+|.. .-||-+|.|.+.+
T Consensus 14 l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDK 59 (89)
T ss_dssp EEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHH
T ss_pred EEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHH
Confidence 55666332 344568888888864 2589999987654
No 109
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=33.37 E-value=42 Score=23.07 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=40.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||+++...|..+.++.+++-- |+.++.....+.+|++. .- ++..|++...
T Consensus 34 ~l~v~~~~tV~~lK~~I~~~~gip~~~Qr-L~~~g~~L~d~~tL~~~----~i~~~~~l~l~~~ 92 (172)
T 3u30_A 34 TLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY----NIQKESTLHLVLR 92 (172)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECCTTCBTGGG----TCCTTCEEEEEEC
T ss_pred EEEECCCCcHHHHHHHHHHHHCcChHHEE-EEECCccccccCCHhHc----CCcccceeeeeec
Confidence 45699999999999999999999876543 33466555667777663 22 3446666654
No 110
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.82 E-value=61 Score=20.15 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=26.1
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCC-ceEEEEE
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAE-KAIFIFV 81 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~-~slflyV 81 (122)
.-++.++||+++...|.+..++++. +.|+++-
T Consensus 27 ~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4689999999999999999999764 5566553
No 111
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.73 E-value=66 Score=20.98 Aligned_cols=43 Identities=7% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCCCceEEEEEcCC-C-CCcc---chHHHHHhhhc-C----CCCeEEEEecCCc
Q 033317 71 LSAEKAIFIFVDNV-L-PPTG---AIMSAIYEEKK-D----EDGFLYVTYSGEN 114 (122)
Q Consensus 71 l~~~~slflyVn~~-l-p~~~---~~~~~lY~~~k-d----~DGfLyi~Ys~~~ 114 (122)
.+|.+++ |||+|- . ...+ ..|.+|+..|. . ..||=||.|.+.+
T Consensus 5 ~~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~VtgG~AfV~F~~~e 57 (96)
T 2diu_A 5 SSGCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSITGCSAILRFINQD 57 (96)
T ss_dssp CCCSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECCTTCEEEEESSHH
T ss_pred CCCcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEecCEEEEEECCHH
Confidence 4566665 778872 1 2222 24778999995 2 4689999887754
No 112
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=31.27 E-value=81 Score=20.42 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=32.1
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcC
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDN 83 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~ 83 (122)
-++.|..+.|+..|...|.++-++.+.+-..||-+.
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~ 61 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGR 61 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 468899999999999999999999998888888774
No 113
>3jr7_A Uncharacterized EGV family protein COG1307; structural genomics, PSI2, MCSG, protein struct initiative; HET: PG6; 2.00A {Ruminococcus gnavus}
Probab=29.92 E-value=1.3e+02 Score=22.97 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
+.+-|.-..+++..+|...++..=.+ |+.| .|++. .+-++|++ +-|..|+|+.|+.
T Consensus 52 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~--~~~~Ii~i~iSs~ 107 (298)
T 3jr7_A 52 EDTQWTDDDSLKQEELLLKIAESTSC-AKTS--------CPSPE-RYMESYHC--DAERIYVVTLSAE 107 (298)
T ss_dssp TTEEEECSTTSCHHHHHHHHHHCSSC-CEEE--------CCCHH-HHHHHHCS--SCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-ceeC--------CCCHH-HHHHHHHh--cCCeEEEEECCcc
Confidence 44556655688999999988754211 2222 34443 35566663 4577999998874
No 114
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.80 E-value=65 Score=19.98 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=13.7
Q ss_pred cchHHHHHhhhcC-------CCCeEEEEecCC
Q 033317 89 GAIMSAIYEEKKD-------EDGFLYVTYSGE 113 (122)
Q Consensus 89 ~~~~~~lY~~~kd-------~DGfLyi~Ys~~ 113 (122)
.+.|.+++..|.+ .|||-+|.|.+.
T Consensus 29 ~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~ 60 (108)
T 1x4c_A 29 WQDLKDHMREAGDVCYADVYRDGTGVVEFVRK 60 (108)
T ss_dssp HHHHHHHHGGGSCEEEEEEETTTEEEEEESSH
T ss_pred HHHHHHHHHhcCCEeEEEEecCCEEEEEECCH
Confidence 3345556665542 136777776654
No 115
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=28.99 E-value=30 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=22.5
Q ss_pred EecCCCchHHHHHHHHHhhcCCC-CceEEE
Q 033317 51 LVPADLTVGQFVYVIRKRIKLSA-EKAIFI 79 (122)
Q Consensus 51 lv~~~~tv~~~~~~lRk~L~l~~-~~slfl 79 (122)
-|+.+.|++++...|.+.++++. ..++++
T Consensus 19 ~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~ 48 (80)
T 2pjh_A 19 TATKRETAATFLKKVAKEFGFQNNGFSVYI 48 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHTCCCTTTCCCCC
T ss_pred EcCCcChHHHHHHHHHHHcCCCCCcceEEe
Confidence 36788899999999999998863 345443
No 116
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=28.81 E-value=18 Score=23.39 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=39.9
Q ss_pred eEEec-CCCchHHHHHHHHHhhcCCCC-ceEEEEEcCC------------C---CCccchHHHHHhhhcC-CCCeEEEEe
Q 033317 49 KYLVP-ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNV------------L---PPTGAIMSAIYEEKKD-EDGFLYVTY 110 (122)
Q Consensus 49 Kflv~-~~~tv~~~~~~lRk~L~l~~~-~slflyVn~~------------l---p~~~~~~~~lY~~~kd-~DGfLyi~Y 110 (122)
..-|. .+.||++|...|..+.++.+. +.|++ ++. + ...+.+|+++ .- .+..|||.|
T Consensus 20 ~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~----gi~~G~~L~l~~ 93 (107)
T 1wf9_A 20 RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSL----NLAHGSMVYLAY 93 (107)
T ss_dssp EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGT----CCCTTCEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHC----CCCCCCEEEEEe
Confidence 34578 899999999999999998754 44433 322 2 2444556543 22 244799998
Q ss_pred cCCcc
Q 033317 111 SGENT 115 (122)
Q Consensus 111 s~~~~ 115 (122)
..+..
T Consensus 94 ~~~~~ 98 (107)
T 1wf9_A 94 EGERT 98 (107)
T ss_dssp SSCCC
T ss_pred CCCCc
Confidence 86643
No 117
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=28.59 E-value=12 Score=26.24 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=0.0
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+-|+.+.||++|...|..+.++++++-- |+.++.....+.+|++.
T Consensus 15 l~V~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~dy 59 (152)
T 3u5c_f 15 LEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY 59 (152)
T ss_dssp ----------------------------------------------
T ss_pred EEECCCCCHHHHHHHHHHHhCCCHHHEE-EEECCEEccccCcHHHc
Confidence 4578899999999999999998876543 33455555666777764
No 118
>3fdj_A DEGV family protein; GUT microbiome, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE P6G PG4; 1.80A {Eubacterium eligens} SCOP: c.119.1.0
Probab=28.36 E-value=89 Score=23.55 Aligned_cols=53 Identities=19% Similarity=0.279 Sum_probs=31.5
Q ss_pred ceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 48 KKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 48 ~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
+-|.-..+++..+|...+++.=.+ |+.| .|+ +++..+.|.+-|..|+|+.|+.
T Consensus 34 ~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps----~~~~~~~f~~~~~ii~i~iSs~ 86 (278)
T 3fdj_A 34 EEFCDDGQLDIHRMLDILEKHKGR-SYTA--------CPG----IDAWLEAFGDDDEIFVVTITAG 86 (278)
T ss_dssp CEEECSTTCCHHHHHHHHHTCCSC-CEEE--------CCC----HHHHHHHHTTCSEEEEEESCTT
T ss_pred EEEecCCCCCHHHHHHHHHhCCCC-ceec--------CCC----HHHHHHHHhcCCcEEEEECCCc
Confidence 345555678888998888753111 2221 343 4444444445577999998874
No 119
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.76 E-value=55 Score=27.23 Aligned_cols=62 Identities=10% Similarity=0.227 Sum_probs=44.3
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEc---CCC--CC-ccchHHHHHhhhcCCCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVD---NVL--PP-TGAIMSAIYEEKKDEDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn---~~l--p~-~~~~~~~lY~~~kd~DGfLyi~Ys 111 (122)
...|+.+.+++++...|+++++++++..|=||=. +.. .. ++.|+.+.+++-.| ...|+.+=.
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~-GdII~fQ~~ 217 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMD-GDIIVFQKD 217 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCT-TEEEEEEEC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccC-CCEEEEEec
Confidence 3679999999999999999999999988877743 212 24 66787777755542 225555543
No 120
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=27.52 E-value=35 Score=25.50 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=42.2
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
++|-|-|. . .+ ....|.|..+.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 56 e~InLKVk-~-dG-----~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI-~~ddTPeDL 115 (207)
T 3tix_A 56 THINLKVS-D-GS-----SEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEI-QADQTPEDL 115 (207)
T ss_dssp CEEEEEEE-C-SS-----CEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEEC-CSSCCTTTT
T ss_pred CcEEEEEe-c-CC-----CEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeec-CCCCCHHHc
Confidence 45666663 2 12 3467999999999999999999999998776687743333 334555444
No 121
>1pzx_A Hypothetical protein APC36103; structural genomics, two domains containing mixed alpha/beta structures, PSI; HET: PLM; 2.00A {Geobacillus stearothermophilus} SCOP: c.119.1.1
Probab=27.48 E-value=80 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=36.9
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (122)
+..-|.-..+++..+|...+++. + -|+.| .|++. .+-++|++..+ .|..|+|+.|+.
T Consensus 35 ~~~~y~D~~di~~~efy~~~~~~-~-~p~TS--------qps~~-~~~~~f~~l~~~g~~ii~i~iSs~ 92 (289)
T 1pzx_A 35 NGQDYKDGITIEPKQVYDAMRQG-H-TVKTA--------QPSPL-AMKELFLPYAKENRPCLYIAFSSK 92 (289)
T ss_dssp TTEEEEBTTTBCHHHHHHHHTTT-C-CCEEE--------CCCHH-HHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhC-C-CCeeC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 34455555678899999888753 2 23332 45554 47778877743 367999998874
No 122
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.06 E-value=1.2e+02 Score=20.50 Aligned_cols=59 Identities=3% Similarity=-0.027 Sum_probs=40.8
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~-DGfLyi~Ys~ 112 (122)
-.-++.+.||++|...|-...+++++.--.+| ++.....++||.+ |+=. ++-++|.-.+
T Consensus 30 tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy-~GKiLKD~eTL~~----~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 30 VIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY-SGKILKNNETLVQ----HGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE-TTEEECSSCCHHH----HSCCSSCEEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE-CCeEcCCcchHHH----cCCCCCCEEEEEEec
Confidence 34589999999999999999998877654444 5555567888875 4543 4445554433
No 123
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=26.95 E-value=49 Score=23.94 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=40.3
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEec
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYS 111 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys 111 (122)
.+-|+.+.||++|...|..+.++++++--. +.++.....+.+|++. .- ++..|+|...
T Consensus 119 ~l~V~~s~TV~~LK~kI~~~~gIp~~~QrL-i~~Gk~L~D~~tL~dy----gI~~gstI~Lvlr 177 (189)
T 3q3f_A 119 TLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLSDY----NIQKESTLHLVLR 177 (189)
T ss_dssp EEEECTTCBHHHHHHHHHHHHCCCGGGCCE-EETTEECCTTCBGGGG----TCCTTCEEEECCC
T ss_pred EEEeCCCCcHHHHHHHHHhccCCCHHHEEE-EECCEECCCCCCHHHC----CCCCCCEEEEEEE
Confidence 356899999999999999999998764333 3466555667777763 22 3446666554
No 124
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=26.87 E-value=24 Score=29.46 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=37.3
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCC--CceEEE--EEcCC---CCCccchHHHHHh
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSA--EKAIFI--FVDNV---LPPTGAIMSAIYE 97 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~--~~slfl--yVn~~---lp~~~~~~~~lY~ 97 (122)
.-.++||++-||+++..-++++.+++. ...|-| ..|++ ..+.+.++..|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d 410 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSP 410 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccc
Confidence 456789999999999999999999864 333433 23444 3577778877766
No 125
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=26.52 E-value=51 Score=20.91 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=22.4
Q ss_pred EEEcCCC-CCccchHHHHHhhhcC-------CCCeEEEEecCCc
Q 033317 79 IFVDNVL-PPTGAIMSAIYEEKKD-------EDGFLYVTYSGEN 114 (122)
Q Consensus 79 lyVn~~l-p~~~~~~~~lY~~~kd-------~DGfLyi~Ys~~~ 114 (122)
|||.|-- -...+.|.+++..|.+ .|||-+|.|.+.+
T Consensus 19 l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~ 62 (115)
T 3beg_B 19 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKE 62 (115)
T ss_dssp EEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHH
Confidence 4555522 2345567888888754 2388888887654
No 126
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.43 E-value=45 Score=19.95 Aligned_cols=16 Identities=6% Similarity=0.173 Sum_probs=8.9
Q ss_pred ecCCCchHHHHHHHHH
Q 033317 52 VPADLTVGQFVYVIRK 67 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk 67 (122)
+|.+.|-.++..++.+
T Consensus 16 Lp~~~t~~~l~~~F~~ 31 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGD 31 (93)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 4555565665555544
No 127
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=26.38 E-value=53 Score=22.21 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=46.4
Q ss_pred ecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhc-CC-------CCeEEEEecCCcccCC
Q 033317 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKK-DE-------DGFLYVTYSGENTFGS 118 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~k-d~-------DGfLyi~Ys~~~~fG~ 118 (122)
|..+.||+++...|..+.++.+.+--.+ -++.....+.||++ |+ .. +--|++.+....+|..
T Consensus 18 ve~sdTV~~lK~kI~~~~giPp~qQrLI-~~Gk~LeD~kTL~d----y~I~~~ta~~q~~atl~Lvlr~~~~fE~ 87 (118)
T 4ajy_B 18 AKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE----CGFTSQTARPQAPATVGLAFRADDTFEA 87 (118)
T ss_dssp EETTSBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTTSBTTT----TTCCGGGSBTTBCEEEEEEECCSSCCCC
T ss_pred cCCCChHHHHHHHHHHHHCCCHHHeEEE-eCCeECCCcCCHHH----cCCCcCcccCCCCCEEEEEEecCCCccc
Confidence 7899999999999999999988654333 35566666777765 22 12 5589999988777764
No 128
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=26.23 E-value=72 Score=20.63 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=31.6
Q ss_pred CCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCC
Q 033317 43 PNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNV 84 (122)
Q Consensus 43 p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~ 84 (122)
|...+.+..|.++.++.|+...-.+++++++++- -|.-|++
T Consensus 17 ~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~-~Lkh~~k 57 (90)
T 2al3_A 17 PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEY-DLKFQRT 57 (90)
T ss_dssp TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGC-EEEETTE
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhC-eEEeCCE
Confidence 4456788999999999999999999999987643 3333443
No 129
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=26.23 E-value=51 Score=23.06 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=41.5
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+-|+.+.||+++...|..+.++++++-- |+.++.....+.+|++. .- .++..|++....
T Consensus 14 ~l~v~~~~TV~~LK~~I~~~~gip~~~Qr-Li~~Gk~L~D~~tL~~y--~I-~~gstI~Lvlrl 73 (169)
T 3l0w_B 14 TLEVESSDTIDNVKSKIQDKEGIPPDQQR-LIFAGKQLEDGRTLSDY--NI-QKESTLHLVLRL 73 (169)
T ss_dssp EEECCTTCBHHHHHHHHHHHHCCCTTTEE-EEETTEECCTTSBGGGG--TC-CTTCEEEEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHCcCHHHEE-EEECCccccCcCcHHHc--CC-CCCCEEEEEEEe
Confidence 35688999999999999999999877653 44466555667777763 11 234467776543
No 130
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=26.13 E-value=75 Score=28.80 Aligned_cols=50 Identities=8% Similarity=0.258 Sum_probs=35.1
Q ss_pred eEEecCCCchHHHHHHHHHhhcCCCC-----ceEEEEEcCCCC------CccchHHHHHhhhc
Q 033317 49 KYLVPADLTVGQFVYVIRKRIKLSAE-----KAIFIFVDNVLP------PTGAIMSAIYEEKK 100 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~l~~~-----~slflyVn~~lp------~~~~~~~~lY~~~k 100 (122)
+|-|+.++|+.+|+..+++++++... .+ -||. ..+| ..+.+|.+|++.-.
T Consensus 921 ~~~v~~~~Tl~~li~~~~~~~~~~~~~i~~~~~-~ly~-~~~~~~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 921 RFDIKGDIKLSDLIEHFEKDEGLEITMLSYGVS-LLYA-SFFPPKKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EEEEESCCBHHHHHHHHHHTTCCEEEEEEETTE-EEEE-TTCCHHHHHHHTTSBHHHHHHHHS
T ss_pred EEEECCCCcHHHHHHHHHHHhCCcceeeccCCc-EEEe-cCCCchhhHHhccCCHHHHHHhhc
Confidence 67788899999999999999887532 11 1222 2234 35778999998753
No 131
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=25.97 E-value=90 Score=20.37 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=38.8
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
-..|.|..+..+.-++...-+|.+++.+.-.|||=+..+ ++++|-.+|
T Consensus 32 ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI-~~~~TP~~L 79 (95)
T 2l76_A 32 LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETEL-SPTATPRTL 79 (95)
T ss_dssp EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEEC-CTTSCHHHH
T ss_pred EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCC-CCCCCHhHc
Confidence 457899999999999999999999999988888766555 445555555
No 132
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=25.82 E-value=1e+02 Score=20.64 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHH
Q 033317 27 PDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAI 95 (122)
Q Consensus 27 P~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~l 95 (122)
+++|-|.|.-.. + ....|.|.++.++..++....++.+++...--|+|=+..+ ..+.|..+|
T Consensus 38 ~~~I~LKV~~qd-g-----~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI-~~~~TP~dL 99 (115)
T 3kyd_D 38 GEYIKLKVIGQD-S-----SEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI-ADNHTPKEL 99 (115)
T ss_dssp -CEEEEEEECTT-S-----CEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEEC-CTTCCTTTT
T ss_pred CCeEEEEEEcCC-C-----CEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeEC-CCCCCHHHc
Confidence 367777774322 1 1247899999999999999999999998876677744444 334444443
No 133
>3gs2_A E3 ubiquitin-protein ligase RING2; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens} PDB: 3ixs_A* 3h8h_A*
Probab=24.65 E-value=1.6e+02 Score=19.75 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=56.4
Q ss_pred cccEEEEccCCCCCC-CCccceE-EecCCCchHHHHHHHHHhhcCCC------------------CceEEEEEc-CC--C
Q 033317 29 RIPVIVEKAERSDIP-NIDKKKY-LVPADLTVGQFVYVIRKRIKLSA------------------EKAIFIFVD-NV--L 85 (122)
Q Consensus 29 ~ipVIvE~~~~~~~p-~L~k~Kf-lv~~~~tv~~~~~~lRk~L~l~~------------------~~slflyVn-~~--l 85 (122)
-|-++..++|..-.. .....+| +-+.+.||.++-..|.-||.|+. +-.||+.-+ +. .
T Consensus 3 EiELVFrPHPt~~~~d~~~~~RYIKTt~nATVDHLsKYLA~Rl~Le~~~~~~e~~~~~~~~~~~~~~~IYia~~~gq~~~ 82 (111)
T 3gs2_A 3 EIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTV 82 (111)
T ss_dssp EEEEEEEECTTTSCCCTTCCCEEEEEETTCBHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC--CCCEEEEEECTTSCEEE
T ss_pred ceEEEecCCcccccccchhceEEEEcCCCccHHHHHHHHHHHHhHHHhhccccccccCccccceeeeEEEEccCCCeEEE
Confidence 355667776643111 2234566 47889999999999988876651 223444433 33 3
Q ss_pred CCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 86 PPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 86 p~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
.+.++++.++-++|=-.+-=|-|-||-
T Consensus 83 L~gs~tLe~VneKywkvnkplelYYa~ 109 (111)
T 3gs2_A 83 LDGSFSLELVSEKYWKVNKPMELYYAP 109 (111)
T ss_dssp CCTTSBHHHHHHHHTCSSSCEEEEEEE
T ss_pred ccCcccHHHHhhhhccCCCCeeEEecc
Confidence 799999999999995567888888874
No 134
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=24.64 E-value=62 Score=19.64 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=35.3
Q ss_pred ecCCCchHHHHHHHHHhhcCCCCceEEEEEc--CCCC-C-ccchHHHHHhhhcCCCCeEEEEecC
Q 033317 52 VPADLTVGQFVYVIRKRIKLSAEKAIFIFVD--NVLP-P-TGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk~L~l~~~~slflyVn--~~lp-~-~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
++.+.||+++...|..+.++.+..--.+|-. ..+. + .+.+++++= -+ ...-|++....
T Consensus 17 l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~g--l~-~g~~l~v~~~~ 78 (86)
T 2kzr_A 17 LSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLP--IQ-SGDMLIVEEDQ 78 (86)
T ss_dssp CCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSS--CC-TTCEEECCCCS
T ss_pred cCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcC--CC-CCCEEEEEeCC
Confidence 6789999999999999999875432223321 1232 2 455666531 11 24467777654
No 135
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=24.61 E-value=60 Score=21.25 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033317 54 ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 117 (122)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~~fG 117 (122)
..+++.+++..+.+.++++.++ ....++++|..- ..||-- .+..++.||
T Consensus 28 ~~~~F~dL~~eV~~~~~~s~ee------------~~~~iaqfYTdL-n~DGRF--i~lGen~Wg 76 (99)
T 2krc_A 28 KPVPFQELLNEIASLLGVKKEE------------LGDRIAQFYTDL-NIDGRF--LALSDQTWG 76 (99)
T ss_dssp SCEEHHHHHHHHHHHHTSCGGG------------GTHHHHHHHHHH-HTCSSC--EESSSSEEE
T ss_pred CcccHHHHHHHHHHHhCCCHHH------------HHHHHHHHHHHH-hccCCe--eECCCCcee
Confidence 5678889998888888776443 136799999988 567742 245777787
No 136
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.57 E-value=32 Score=22.57 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=43.0
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCC--------------ceEEEEEcCC-CCCccchHHHHHhhhcCCCCeEEEEecCCc
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAE--------------KAIFIFVDNV-LPPTGAIMSAIYEEKKDEDGFLYVTYSGEN 114 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~--------------~slflyVn~~-lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~~ 114 (122)
.-|+.+.||+++...|..+.++.+. ...-|..++. |-..+.+|++ |. =+ ++.+|++.-....
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~d-yg-I~-~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD-YG-IR-NRDEVSFIKKLGQ 98 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHH-HT-CC-SSEEEEEEECSCS
T ss_pred EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHH-cC-CC-CCCEEEEEehhcc
Confidence 3488999999999999999877542 1334444554 4445578887 22 11 4557888776665
Q ss_pred ccC
Q 033317 115 TFG 117 (122)
Q Consensus 115 ~fG 117 (122)
..|
T Consensus 99 ~~~ 101 (105)
T 1v2y_A 99 KSG 101 (105)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 137
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=24.51 E-value=50 Score=21.17 Aligned_cols=55 Identities=9% Similarity=0.031 Sum_probs=36.7
Q ss_pred ecCCCchHHHHHHH-HHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC--CCCeEEEEec
Q 033317 52 VPADLTVGQFVYVI-RKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD--EDGFLYVTYS 111 (122)
Q Consensus 52 v~~~~tv~~~~~~l-Rk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd--~DGfLyi~Ys 111 (122)
|+.+.||+++...| ..+-++++++-- |..++.....+.+|++ |+- ++.+|++--+
T Consensus 38 v~~~~TV~~lK~~I~~~~~gip~~~Qr-Li~~Gk~L~D~~tL~d----y~I~~~g~ti~lmvs 95 (98)
T 4a20_A 38 FSPSDTILQIKQHLISEEKASHISEIK-LLLKGKVLHDNLFLSD----LKVTPANSTITVMIK 95 (98)
T ss_dssp ECTTCBHHHHHHHHHHTTSCSCGGGEE-EEETTEEECTTCBGGG----SCCBTTBCEEEEEEC
T ss_pred cCCCChHHHHHHHHHHHhcCCChhhEE-EEECCEECcCcCCHHH----cCcCCCCCEEEEEEe
Confidence 46999999999999 777677766543 3446655566677776 332 3557766543
No 138
>3tuo_A DNA-binding protein SATB1; 1.70A {Homo sapiens}
Probab=24.50 E-value=1.5e+02 Score=19.70 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=46.1
Q ss_pred Cccc--EEEEccCCCCCCCCcc-----ceEEecCCCchHHHHHHHHHhhcCCCC----ceEEEEEcC-C------C-CCc
Q 033317 28 DRIP--VIVEKAERSDIPNIDK-----KKYLVPADLTVGQFVYVIRKRIKLSAE----KAIFIFVDN-V------L-PPT 88 (122)
Q Consensus 28 ~~ip--VIvE~~~~~~~p~L~k-----~Kflv~~~~tv~~~~~~lRk~L~l~~~----~slflyVn~-~------l-p~~ 88 (122)
..+| .+||..... ...+. .--+||++..+.|++...=.+|+.+.+ ..=-+-|+| + + ..+
T Consensus 6 ~mlPV~CVVE~~~~~--~~~~~~~E~~syviI~~~t~f~qLV~taL~~LGYs~~~a~~A~G~I~v~nWkPLp~~~itd~p 83 (105)
T 3tuo_A 6 TMLPVFCVVEHYENA--IEYDCKEEHAEFVLVRKDMLFNQLIEMALLSLGYSHSSAAQAKGLIQVGKWNPVPLSYVTDAP 83 (105)
T ss_dssp SEEEEEEEEEEECCC--SSCCCEEEEEEEEEEETTSBGGGHHHHHHHHTTCCHHHHHHCEEEEEETTSCCBCGGGTCCCT
T ss_pred cceeeEEEEEecccc--cccccccceeeEEEEeccchHHHHHHHHHHHcCCCchhhhhccceEEEccccCcCHHHcCCCc
Confidence 3566 477877432 12221 224899999999999999999998743 222456776 2 2 578
Q ss_pred cchHHHHHhh
Q 033317 89 GAIMSAIYEE 98 (122)
Q Consensus 89 ~~~~~~lY~~ 98 (122)
+.|+|++-.+
T Consensus 84 ~~TV~d~L~e 93 (105)
T 3tuo_A 84 DATVADMLQD 93 (105)
T ss_dssp TCBHHHHHTT
T ss_pred hhhHHHHHHH
Confidence 8999988654
No 139
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=24.45 E-value=63 Score=19.10 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=24.6
Q ss_pred EEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccc
Q 033317 50 YLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGA 90 (122)
Q Consensus 50 flv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~ 90 (122)
+-++...|++++... |++++. .+.+.+|+.+.+.++
T Consensus 18 ~~~~~~~tv~~Ll~~----l~~~~~-~v~vavN~~~v~~~~ 53 (70)
T 1ryj_A 18 LESGAPRRIKDVLGE----LEIPIE-TVVVKKNGQIVIDEE 53 (70)
T ss_dssp EEESSCCBHHHHHHH----TTCCTT-TEEEEETTEECCTTS
T ss_pred EECCCCCcHHHHHHH----hCCCCC-CEEEEECCEECCCcc
Confidence 567788899987664 466654 456889987654444
No 140
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=24.01 E-value=77 Score=19.26 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=31.6
Q ss_pred HHHHHHHhhCCCcccEEEEccCCCC---CCCCccceEEecCCCchHHHHHHHHHhhcCC
Q 033317 17 AEAARIREKYPDRIPVIVEKAERSD---IPNIDKKKYLVPADLTVGQFVYVIRKRIKLS 72 (122)
Q Consensus 17 ~e~~~i~~kyP~~ipVIvE~~~~~~---~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~ 72 (122)
.-...+++.+| .+|||+=...... ...++.. -.+.+..+..++...|++-+.-.
T Consensus 68 ~~~~~l~~~~~-~~~ii~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 68 QVARVAREIDP-NMPIVYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp HHHHHHHHHCT-TCCEEEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC-CCCEEEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhcC
Confidence 34566777766 6887775432211 0011111 25667788889998888877544
No 141
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=24.00 E-value=63 Score=23.70 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=32.4
Q ss_pred cceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCC
Q 033317 47 KKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVL 85 (122)
Q Consensus 47 k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~l 85 (122)
...|.|.++.++..++.....+.+++..+--|+|=+..+
T Consensus 40 ~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI 78 (200)
T 3pge_A 40 EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI 78 (200)
T ss_dssp EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEEC
T ss_pred EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEc
Confidence 457999999999999999999999998776677744343
No 142
>2dt8_A DEGV family protein; fatty acid binding, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: PLM; 1.48A {Thermus thermophilus}
Probab=23.96 E-value=1.1e+02 Score=23.06 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=37.4
Q ss_pred ccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC-CCeEEEEecCC
Q 033317 46 DKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE-DGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~-DGfLyi~Ys~~ 113 (122)
+..-|.-..+++..+|...+++.=.+ |+.| .|++. .+-++|++..++ |..|+|+.|+.
T Consensus 33 ~~~~y~D~~di~~~efy~~~~~~~~~-p~TS--------qps~~-~~~~~f~~l~~~~~~ii~i~lSs~ 91 (280)
T 2dt8_A 33 SGAIYRDWEEITPTEIFQKVREGAAF-PTTS--------QPSPE-DFARVYREALEEADHVLSLHISGK 91 (280)
T ss_dssp TTEEEETTTTCCHHHHHHHHHTTCCC-CEEE--------CCCHH-HHHHHHHHHTTSCSEEEEEESCTT
T ss_pred CCEEEecCCCCCHHHHHHHHHhCCCC-cccC--------CCCHH-HHHHHHHHHHhCCCeEEEEECCCc
Confidence 33445545678999999988753122 2222 35443 577888887554 67999998874
No 143
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.50 E-value=72 Score=24.35 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKA 37 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~ 37 (122)
.-|.|||.+-.+...+.-..++|||+--.
T Consensus 63 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg 91 (307)
T 3s5o_A 63 FLTSSERLEVVSRVRQAMPKNRLLLAGSG 91 (307)
T ss_dssp GSCHHHHHHHHHHHHHTSCTTSEEEEECC
T ss_pred hCCHHHHHHHHHHHHHHcCCCCcEEEecC
Confidence 35779999999999998899999999654
No 144
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=23.49 E-value=53 Score=20.64 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=27.9
Q ss_pred eEEecCCCchHHHHHHHHHhhc-CC---------CCceEEEEEcCCCCCccc
Q 033317 49 KYLVPADLTVGQFVYVIRKRIK-LS---------AEKAIFIFVDNVLPPTGA 90 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~-l~---------~~~slflyVn~~lp~~~~ 90 (122)
.+-++...|+++++..|..+.. +. ....+-++||+.....+.
T Consensus 30 ~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~ 81 (98)
T 1vjk_A 30 EIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE 81 (98)
T ss_dssp EEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC
T ss_pred EEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC
Confidence 4456788999999999876631 11 124567899987644443
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.18 E-value=39 Score=20.03 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=13.9
Q ss_pred chHHHHHhhhcC---------CCCeEEEEecCCc
Q 033317 90 AIMSAIYEEKKD---------EDGFLYVTYSGEN 114 (122)
Q Consensus 90 ~~~~~lY~~~kd---------~DGfLyi~Ys~~~ 114 (122)
+.|.+++..|.. .-||-+|.|.+.+
T Consensus 20 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 20 DELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQ 53 (88)
T ss_dssp HHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHH
T ss_pred HHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHH
Confidence 345666666632 2466677766543
No 146
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.91 E-value=2.1e+02 Score=22.07 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=38.9
Q ss_pred CccceEEecCCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcC-CCCeEEEEecCC
Q 033317 45 IDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKD-EDGFLYVTYSGE 113 (122)
Q Consensus 45 L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd-~DGfLyi~Ys~~ 113 (122)
++.+-|.-..+++..+|...+++.=.+ |+.| .|++ ..+-++|++..+ -|..|+|+.|+.
T Consensus 66 ~~~~~Y~D~~di~~~efy~~m~~~~~~-p~TS--------qPs~-~~~~~~fe~l~~~~~~Ii~I~iSS~ 125 (315)
T 3fys_A 66 FREETYREEIELDWKSFYEEVKKHNEL-PTTS--------QPPI-GELVALYEELGKSYDAVISIHLSSG 125 (315)
T ss_dssp CSSCEEEBTTTBCHHHHHHHHHTTTCC-CEEE--------CCCH-HHHHHHHHHHTTTCSEEEEEESCTT
T ss_pred ECCEEEECCCCCCHHHHHHHHHhCCCC-cccC--------CCCH-HHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 355566666688999999988753112 2222 3444 457788888766 477999998864
No 147
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.51 E-value=53 Score=25.02 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEEecCCC---chHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNID--------KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p~L~--------k~Kflv~~~~---tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.|||.+-.+...+.-..++|||+--...+. +-.+- .--.++|+-. +-..++.+.+.=..-. .-
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~-~l 131 (300)
T 3eb2_A 53 YLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAV-EI 131 (300)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred ccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC-CC
Confidence 347799999999998888899999996653221 00000 0112333221 3445555554322211 24
Q ss_pred eEEEEEcCC---CCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDNV---LPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~~---lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.++||=+-. ..-..+++.+|- + .+.+.-|.+++-
T Consensus 132 PiilYn~P~~tg~~l~~~~~~~La-~---~pnIvgiKdssg 168 (300)
T 3eb2_A 132 PVVIYTNPQFQRSDLTLDVIARLA-E---HPRIRYIKDAST 168 (300)
T ss_dssp CEEEEECTTTCSSCCCHHHHHHHH-T---STTEEEEEECSS
T ss_pred CEEEEECccccCCCCCHHHHHHHH-c---CCCEEEEEcCCC
Confidence 578876521 222234677772 2 356777887764
No 148
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.48 E-value=86 Score=18.76 Aligned_cols=10 Identities=20% Similarity=0.737 Sum_probs=5.1
Q ss_pred CeEEEEecCC
Q 033317 104 GFLYVTYSGE 113 (122)
Q Consensus 104 GfLyi~Ys~~ 113 (122)
||-+|.|.+.
T Consensus 53 g~afV~f~~~ 62 (99)
T 2div_A 53 GYCFVEFADL 62 (99)
T ss_dssp EEEEEECSCH
T ss_pred CEEEEEeCCH
Confidence 4555555443
No 149
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=22.15 E-value=61 Score=24.78 Aligned_cols=100 Identities=10% Similarity=0.029 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCc--------cceEEecCCC---chHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNID--------KKKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p~L~--------k~Kflv~~~~---tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.|||.+-.+...+.-..++|||+--...+. +-.+- .--.++|.-. +-..+..+.+.=..-. .-
T Consensus 64 ~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 142 (304)
T 3l21_A 64 TTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT-EL 142 (304)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSC-SS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc-CC
Confidence 347799999999999888899999997643221 00000 0112333221 3445555554433222 44
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~---~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.++||=+- ...-..+++.+|- ++ +.+.-|.+++-
T Consensus 143 PiilYn~P~~tg~~l~~~~~~~La-~~---pnIvgiKdssg 179 (304)
T 3l21_A 143 PMLLYDIPGRSAVPIEPDTIRALA-SH---PNIVGVXDAKA 179 (304)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHH-TS---TTEEEEEECSC
T ss_pred CEEEEeCccccCCCCCHHHHHHHh-cC---CCEEEEECCCC
Confidence 67777541 1222334566665 22 45777777653
No 150
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.67 E-value=64 Score=24.34 Aligned_cols=101 Identities=10% Similarity=0.054 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCCC---chHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNIDK--------KKYLVPADL---TVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p~L~k--------~Kflv~~~~---tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.|||.+-.+...+.-..++|||+--...+. +-.+-+ --.++|+-. +-..+..+.+.=..- ..-
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~l 127 (289)
T 2yxg_A 49 TLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INL 127 (289)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCC
Confidence 357799999888888888889999987654321 000000 112233322 334444444432211 123
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~---~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.+++|=+- ...-..+++.+|-+++ +.+.-|..|+-
T Consensus 128 PiilYn~P~~tg~~l~~~~~~~La~~~---pnivgiK~s~g 165 (289)
T 2yxg_A 128 PIVLYNVPSRTAVNLEPKTVKLLAEEY---SNISAVKEANP 165 (289)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHC---TTEEEEEECCS
T ss_pred CEEEEeCccccCcCCCHHHHHHHHHhC---CCEEEEEeCCC
Confidence 57777642 1232345677886444 45666776653
No 151
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=21.61 E-value=84 Score=24.07 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC---------CCCCc--cceEEecCCC---chHHHHHHHHHhhcCCCC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD---------IPNID--KKKYLVPADL---TVGQFVYVIRKRIKLSAE 74 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~---------~p~L~--k~Kflv~~~~---tv~~~~~~lRk~L~l~~~ 74 (122)
.-|.|||++-.+...+.-..++|||+--...+- +-.+. .--.++|+-. +-..+..+.+.=..-. .
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~-~ 134 (311)
T 3h5d_A 56 TLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADAS-D 134 (311)
T ss_dssp GSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSC-S
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhC-C
Confidence 357799999999999998999999996643210 01111 1123343321 3345555554332211 3
Q ss_pred ceEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecC
Q 033317 75 KAIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSG 112 (122)
Q Consensus 75 ~slflyVn~---~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~ 112 (122)
-.+++|=+- ...-..+++.+|-+ .+.+.-|.+|+
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~----~pnIvgiKdss 171 (311)
T 3h5d_A 135 LPIIIYNIPGRVVVELTPETMLRLAD----HPNIIGVKECT 171 (311)
T ss_dssp SCEEEEECHHHHSSCCCHHHHHHHHT----STTEEEEEECS
T ss_pred CCEEEEecccccCCCCCHHHHHHHhc----CCCEEEEEeCC
Confidence 467777541 12222345666653 25577777766
No 152
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=21.43 E-value=44 Score=20.44 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=27.5
Q ss_pred eEEecCCCchHHHHHHHHHhhc------CCCC----ceEEEEEcCCCCCccc
Q 033317 49 KYLVPADLTVGQFVYVIRKRIK------LSAE----KAIFIFVDNVLPPTGA 90 (122)
Q Consensus 49 Kflv~~~~tv~~~~~~lRk~L~------l~~~----~slflyVn~~lp~~~~ 90 (122)
.+-+|...|+++++..|..+.. ++.+ ..+-++||+.....+.
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~ 72 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGE 72 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTS
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCc
Confidence 3456778899999999987642 2211 2367889986544443
No 153
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=21.40 E-value=66 Score=24.27 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~ 79 (291)
T 3a5f_A 50 TMTETERKETIKFVIDKVNKRIPVIAGTGS 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 357799999888888888889999987654
No 154
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=21.34 E-value=68 Score=23.22 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCCceEEEEEc
Q 033317 63 YVIRKRIKLSAEKAIFIFVD 82 (122)
Q Consensus 63 ~~lRk~L~l~~~~slflyVn 82 (122)
.-+|++|++.+++.|.+++.
T Consensus 20 keiR~~LgI~~GD~l~~~~~ 39 (178)
T 2w1t_A 20 KEIRRTLRIREGDPLEIFVD 39 (178)
T ss_dssp HHHHHHTTCCTTCEEEEEEC
T ss_pred HHHHHHcCcCCCCEEEEEEe
Confidence 45899999999999999997
No 155
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=21.34 E-value=89 Score=23.62 Aligned_cols=102 Identities=9% Similarity=0.028 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CCCCcc--------ceEEecCC----CchHHHHHHHHHhhcCCC-
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IPNIDK--------KKYLVPAD----LTVGQFVYVIRKRIKLSA- 73 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p~L~k--------~Kflv~~~----~tv~~~~~~lRk~L~l~~- 73 (122)
.-|.|||.+-.+...+.-..++|||+--...+. +-.+-+ --.++|.- .+-..+..+.+.=..-.+
T Consensus 52 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~ 131 (294)
T 3b4u_A 52 SVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGK 131 (294)
T ss_dssp GSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCT
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 357799999999999888899999987654321 000000 11222221 133445444443221111
Q ss_pred -CceEEEEEcC---CCCCccchHHHHHhhhcCCCC-eEEEEecCC
Q 033317 74 -EKAIFIFVDN---VLPPTGAIMSAIYEEKKDEDG-FLYVTYSGE 113 (122)
Q Consensus 74 -~~slflyVn~---~lp~~~~~~~~lY~~~kd~DG-fLyi~Ys~~ 113 (122)
.-.+++|=+- ...-..+++.+|-+++ +. +.-|.+++-
T Consensus 132 ~~lPiilYn~P~~tg~~l~~~~~~~La~~~---pn~ivgiKds~g 173 (294)
T 3b4u_A 132 DARDILVYNIPSVTMVTLSVELVGRLKAAF---PGIVTGVKDSSG 173 (294)
T ss_dssp TCCCEEEEECHHHHSCCCCHHHHHHHHHHC---TTTEEEEEECCC
T ss_pred CCCcEEEEECcchhCcCCCHHHHHHHHHhC---CCcEEEEEECCC
Confidence 2357777641 1222345677886444 44 777777653
No 156
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=21.26 E-value=65 Score=24.71 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEcc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKA 37 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~ 37 (122)
.-|.|||.+-.+...+.-..++|||+--.
T Consensus 61 ~Ls~eEr~~v~~~~v~~~~grvpViaGvg 89 (316)
T 3e96_A 61 ALSLEEAKEEVRRTVEYVHGRALVVAGIG 89 (316)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 34779999999999988889999999764
No 157
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.20 E-value=1.1e+02 Score=18.35 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=9.1
Q ss_pred ecCCCchHHHHHHHHHh
Q 033317 52 VPADLTVGQFVYVIRKR 68 (122)
Q Consensus 52 v~~~~tv~~~~~~lRk~ 68 (122)
+|.+.|-.++..++.+.
T Consensus 27 L~~~~t~~~l~~~F~~~ 43 (97)
T 2e5j_A 27 LPRDARVSDLKRALREL 43 (97)
T ss_dssp CCTTCCHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhc
Confidence 45555555555555443
No 158
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=21.16 E-value=67 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 56 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 85 (297)
T 3flu_A 56 TLSVEEHTAVIEAVVKHVAKRVPVIAGTGA 85 (297)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 357799999999988888899999996653
No 159
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.13 E-value=66 Score=24.31 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 49 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 78 (294)
T 2ehh_A 49 TLTFEEHEKVIEFAVKRAAGRIKVIAGTGG 78 (294)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 357799999888888888889999987654
No 160
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.99 E-value=68 Score=24.66 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 72 ~Ls~~Er~~v~~~~v~~~~grvpViaGvg~ 101 (314)
T 3qze_A 72 TLDVEEHIQVIRRVVDQVKGRIPVIAGTGA 101 (314)
T ss_dssp GCCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEeCCC
Confidence 346799999999888888899999996653
No 161
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.96 E-value=1.3e+02 Score=18.54 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=7.1
Q ss_pred CCeEEEEecCCc
Q 033317 103 DGFLYVTYSGEN 114 (122)
Q Consensus 103 DGfLyi~Ys~~~ 114 (122)
-||-+|.|.+.+
T Consensus 67 ~g~afV~f~~~~ 78 (114)
T 2cq4_A 67 KGIAYVEFCEIQ 78 (114)
T ss_dssp CCCEEEEESCGG
T ss_pred CcEEEEEeCcHH
Confidence 356666666543
No 162
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=20.93 E-value=69 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (291)
T 3tak_A 50 TLSMEEHTQVIKEIIRVANKRIPIIAGTGA 79 (291)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCeEEEeCCC
Confidence 357799999999998888899999996653
No 163
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=20.86 E-value=68 Score=24.53 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 57 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 86 (309)
T 3fkr_A 57 AITDDERDVLTRTILEHVAGRVPVIVTTSH 86 (309)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 346799999999888888899999997654
No 164
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=20.83 E-value=67 Score=24.49 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 65 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 94 (304)
T 3cpr_A 65 TTTAAEKLELLKAVREEVGDRAKLIAGVGT 94 (304)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEecCCC
Confidence 357799999888888888899999987654
No 165
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.72 E-value=70 Score=24.15 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 50 ~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~ 79 (292)
T 2ojp_A 50 TLNHDEHADVVMMTLDLADGRIPVIAGTGA 79 (292)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 357799999888888888889999987654
No 166
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.53 E-value=69 Score=24.18 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 53 ~Ls~~Er~~v~~~~~~~~~grvpviaGvg~ 82 (293)
T 1f6k_A 53 MLSTEEKKEIFRIAKDEAKDQIALIAQVGS 82 (293)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCeEEEecCC
Confidence 357799999888888888889999987654
No 167
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.38 E-value=69 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 60 ~Ls~eEr~~v~~~~~~~~~grvpViaGvg~ 89 (303)
T 2wkj_A 60 VQSLSEREQVLEIVAEEAKGKIKLIAHVGC 89 (303)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 357799999888888888889999996654
No 168
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.24 E-value=72 Score=24.10 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccC
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAE 38 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~ 38 (122)
.-|.|||.+-.+...+.-..++|||+--..
T Consensus 51 ~Lt~~Er~~v~~~~~~~~~grvpviaGvg~ 80 (292)
T 3daq_A 51 TLTTDEKELILKTVIDLVDKRVPVIAGTGT 80 (292)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCEEEECCC
T ss_pred cCCHHHHHHHHHHHHHHhCCCCcEEEeCCc
Confidence 346799999888888888899999996643
No 169
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=20.20 E-value=63 Score=24.85 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCcccEEEEccCCCC--CC-------CCc-cceEEecCC---CchHHHHHHHHHhhcCCCCc
Q 033317 9 EHDLEKRRAEAARIREKYPDRIPVIVEKAERSD--IP-------NID-KKKYLVPAD---LTVGQFVYVIRKRIKLSAEK 75 (122)
Q Consensus 9 ~~~~e~R~~e~~~i~~kyP~~ipVIvE~~~~~~--~p-------~L~-k~Kflv~~~---~tv~~~~~~lRk~L~l~~~~ 75 (122)
.-|.|||++-.+...+.-..++|||+--...+. +- .+. .--.++|+- .+-.+++.+.+.=..-. .-
T Consensus 73 ~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-~l 151 (315)
T 3na8_A 73 YLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI-GV 151 (315)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC-SS
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC-CC
Confidence 346799999999999888899999996643210 00 000 011222222 13344444444322111 24
Q ss_pred eEEEEEcC---CCCCccchHHHHHhhhcCCCCeEEEEecCC
Q 033317 76 AIFIFVDN---VLPPTGAIMSAIYEEKKDEDGFLYVTYSGE 113 (122)
Q Consensus 76 slflyVn~---~lp~~~~~~~~lY~~~kd~DGfLyi~Ys~~ 113 (122)
.++||=+- ...-..+++.+|-.++ +.+.-|.+++-
T Consensus 152 PiilYn~P~~tg~~l~~~~~~~L~a~~---pnIvgiKdssg 189 (315)
T 3na8_A 152 PVMLYNNPGTSGIDMSVELILRIVREV---DNVTMVKESTG 189 (315)
T ss_dssp CEEEEECHHHHSCCCCHHHHHHHHHHS---TTEEEEEECSS
T ss_pred cEEEEeCcchhCcCCCHHHHHHHHhcC---CCEEEEECCCC
Confidence 67777641 1222235777775554 45777777754
No 170
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=20.16 E-value=1.9e+02 Score=18.78 Aligned_cols=47 Identities=6% Similarity=0.084 Sum_probs=33.0
Q ss_pred CcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhcCCCCc-eEEE
Q 033317 28 DRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEK-AIFI 79 (122)
Q Consensus 28 ~~ipVIvE~~~~~~~p~L~k~Kflv~~~~tv~~~~~~lRk~L~l~~~~-slfl 79 (122)
+.|.|.|..... + ...-.-|+.+.||+++...|..+.+++++. .|++
T Consensus 5 ~~v~l~V~~~~~---~--~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~ 52 (122)
T 1t0y_A 5 EVYDLEITTNAT---D--FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQL 52 (122)
T ss_dssp CEEEEEEEESSC---C--SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred CEEEEEEEECCC---C--ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEE
Confidence 456777754321 1 223457999999999999999999998764 4443
No 171
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=20.13 E-value=41 Score=20.02 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=25.6
Q ss_pred CCCchHHHHHHHHHhhcCCCC-ceEEEEEcCCC-CCccch
Q 033317 54 ADLTVGQFVYVIRKRIKLSAE-KAIFIFVDNVL-PPTGAI 91 (122)
Q Consensus 54 ~~~tv~~~~~~lRk~L~l~~~-~slflyVn~~l-p~~~~~ 91 (122)
...|+++++..|..+-.+... +.+-+.||+.. +..+..
T Consensus 19 ~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~ 58 (74)
T 3rpf_C 19 KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP 58 (74)
T ss_dssp ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC
T ss_pred CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC
Confidence 567999999988765333321 45778899876 655544
No 172
>1mgp_A Hypothetical protein TM841; two domain structure with mixed alpha/beta structures in BOTH domains, structural genomics; HET: PLM; 2.00A {Thermotoga maritima} SCOP: c.119.1.1 PDB: 1vpv_A*
Probab=20.07 E-value=1.1e+02 Score=23.70 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=35.0
Q ss_pred ccc-eEEec-CCCchHHHHHHHHHhhcCCCCceEEEEEcCCCCCccchHHHHHhhhcCC--CCeEEEEecCC
Q 033317 46 DKK-KYLVP-ADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDE--DGFLYVTYSGE 113 (122)
Q Consensus 46 ~k~-Kflv~-~~~tv~~~~~~lRk~L~l~~~~slflyVn~~lp~~~~~~~~lY~~~kd~--DGfLyi~Ys~~ 113 (122)
+.. -|.-. -+++..+|...+++.-.+ |+.| .|++. .+-++|++..++ |..|+|+.|+.
T Consensus 58 ~~~~~Y~D~~~di~~~efy~~m~~~~~~-pkTS--------qPs~~-~~~e~f~~l~~~g~d~Ii~I~iSs~ 119 (313)
T 1mgp_A 58 EDGRSEPDEREPEEIMNFYKRIREAGSV-PKTS--------QPSVE-DFKKRYLKYKEEDYDVVLVLTLSSK 119 (313)
T ss_dssp TTSCEEECCCCHHHHHHHHHHHHHCSSC-CEEE--------CCCHH-HHHHHHHHHHHTTCSEEEEEESCTT
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHhCCCC-cccC--------CcCHH-HHHHHHHHHHHcCCCeEEEEECCcc
Confidence 444 45433 467778888888753222 2222 34443 577788877443 46999998874
Done!