BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033318
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 9 NSKVALFDGIEEGGIRASSSYSHEIDEHDNERAL-EGLQDRVNLLKRLSGDI 59
N KV IEEG + EI EHD E + E ++ + LL+RL +
Sbjct: 230 NRKVDFLSEIEEGVSGXKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKV 281
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR 81
E+DE+ LE + + L+ ++ D+ E+DT NR ++R+ D+++
Sbjct: 451 EMDEN-----LEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNK 495
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 9 NSKVALFDGIEEGGIRASSSYSHEIDEHDNERAL-EGLQDRVNLLKRLSGDI 59
N KV IEEG + EI EHD E + E ++ + LL+RL +
Sbjct: 229 NRKVDFLSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKV 280
>pdb|1KXH|A Chain A, Crystal Structure Of The Complex Between An Inactive
Mutant Of Psychrophilic Alpha-Amylase (D174n) And
Acarbose
Length = 448
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YRNSKVALFDGIEEG-GIRASSSYSHEIDEHDNERALEG 44
+RN +A EG G SSS +D HDN+R G
Sbjct: 233 FRNGSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHGG 271
>pdb|1G94|A Chain A, Crystal Structure Analysis Of The Ternary Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis In Complex With A Hepta-Saccharide And A
Tris Molecule
pdb|1G9H|A Chain A, Ternary Complex Between Psychrophilic Alpha-Amylase, Comii
(Pseudo Tri-Saccharide From Bayer) And Tris (2-Amino-2-
Hydroxymethyl-Propane-1,3-Diol)
pdb|1L0P|A Chain A, Crystal Structure Analysis Of The Complex Between
Psychrophilic Alpha Amylase From Pseudoalteromonas
Haloplanctis And Nitrate
Length = 448
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YRNSKVALFDGIEEG-GIRASSSYSHEIDEHDNERALEG 44
+RN +A EG G SSS +D HDN+R G
Sbjct: 233 FRNGSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHGG 271
>pdb|1JD9|A Chain A, Crystal Structure Analysis Of The Mutant K300q Of
Pseudoalteromonas Haloplanctis Alpha-amylase
Length = 453
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YRNSKVALFDGIEEG-GIRASSSYSHEIDEHDNERALEG 44
+RN +A EG G SSS +D HDN+R G
Sbjct: 233 FRNGSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHGG 271
>pdb|1B0I|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQH|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis
pdb|1AQM|A Chain A, Alpha-Amylase From Alteromonas Haloplanctis Complexed With
Tris
Length = 453
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YRNSKVALFDGIEEG-GIRASSSYSHEIDEHDNERALEG 44
+RN +A EG G SSS +D HDN+R G
Sbjct: 233 FRNGSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHGG 271
>pdb|1JD7|A Chain A, Crystal Structure Analysis Of The Mutant K300r Of
Pseudoalteromonas Haloplanctis Alpha-Amylase
Length = 453
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 7 YRNSKVALFDGIEEG-GIRASSSYSHEIDEHDNERALEG 44
+RN +A EG G SSS +D HDN+R G
Sbjct: 233 FRNGSLAWLSNFGEGWGFMPSSSAVVFVDNHDNQRGHGG 271
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein
Suggests The Mechanism Of Insertion Into Membranes
Length = 482
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 89 DKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119
D + ++ S+ M ++VA+ VV F++VY+
Sbjct: 227 DLWGAIYRGGSAPDMLSVVATIVVFFIVVYF 257
>pdb|3E57|A Chain A, Crystal Structure Of Tm1382, A Putative Nudix Hydrolase
pdb|3E57|B Chain B, Crystal Structure Of Tm1382, A Putative Nudix Hydrolase
Length = 211
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 24 RASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMG 74
R + YS I H E +G R LK L ++NEEVD R LE +G
Sbjct: 94 RLHNLYSLGIGGHVREG--DGATPREAFLKGLEREVNEEVDVSLRELEFLG 142
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 52 LKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSS 100
LK ++ +I E+D NR ++R+ + D +R + + K + ++ +S
Sbjct: 449 LKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLIDSANS 497
>pdb|4FIU|A Chain A, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|B Chain B, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
pdb|4FIU|C Chain C, The Structure Of Hemagglutinin Of H16 Subtype Influenza
Virus With V327g Mutation
Length = 515
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94
+H NE+ D+ + K INE N ++E+M + D+ RG + + M+
Sbjct: 359 QHQNEQGTGIAADKTSTQKA----INEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMI 414
>pdb|4F23|A Chain A, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|B Chain B, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
pdb|4F23|C Chain C, Influenza A Virus Hemagglutinin H16 Ha0 Structure With An
Alpha-Helix Conformation In The Cleavage Site: A
Potential Drug Target
Length = 515
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94
+H NE+ D+ + K INE N ++E+M + D+ RG + + M+
Sbjct: 359 QHQNEQGTGIAADKTSTQKA----INEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMI 414
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE
COMPLEX
Length = 66
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 27 SSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR 81
S+ +E+DE+ LE + + L+ ++ D+ E+DT NR ++R+ D+++
Sbjct: 2 SARENEMDEN-----LEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNK 51
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 66
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 27 SSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR 81
S+ +E+DE+ LE + + L+ ++ D+ E+DT NR ++R+ D+++
Sbjct: 2 SARENEMDEN-----LEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNK 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,127,644
Number of Sequences: 62578
Number of extensions: 112421
Number of successful extensions: 257
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 25
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)